dps_2360

Name	Class	Family	Strand
DMCR1A	LINE	CR1	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGATCGAACTGAAGCAGACTTTACTCCAGCTTCAGTGCAAGGATGAGCCGGTAAGTCCGTTGTGCATTTCGTTGAGGAGATACTCATGACCCTTTTAGGGTTTAGAGATGTATCCTCCTGAGATGAATTTTTAGCTACCCTTGTTCCAGGTCTCAATTAGTCCTCTTCTAAAACTCCCTTCCTTCACCAGTCAAGGTTAATTCTGGAGCACCTTACTTTTTACTCTTCATTAATTCATTCATTCCTTCGGT **********************************************************************.(((((.((((((..((((((...))))))..))).))).)))))((((((.....))))))....(((......)))***************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902010 ovaries	M062 head	GSM343916 embryo
..........................................................................................................................................................................AACCTCGCATCCTTCACCA..............................................................	19	3	14	1.00	14	12	0	1	1
.................................................................................................................................TTTAGCTACCCTTGTTCCAGG.....................................................................................................	21	0	1	1.00	1	1	0	0	0
........................................................................TGAGGAGATACTCATGACCCT..............................................................................................................................................................	21	0	2	0.50	1	1	0	0	0
...................................................................TTCGTTGAGGAGATACTCATG...................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0
................................................................CATTTCGTTGAGGAGATACTC......................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0
................................................CGGTAAGTCACTTGGGCATTT......................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0
.................................................GGTAAGTCACTTGGGCATTT......................................................................................................................................................................................	20	3	10	0.30	3	3	0	0	0
..............................................................................................................................................................................................TCAATGTTTATTCTGGAG...........................................	18	2	7	0.14	1	0	1	0	0
..ATCGAACTGAAGCAGGGT.......................................................................................................................................................................................................................................	18	2	13	0.08	1	1	0	0	0

TCTAGCTTGACTTCGTCTGAAATGAGGTCGAAGTCACGTTCCTACTCGGCCATTCAGGCAACACGTAAAGCAACTCCTCTATGAGTACTGGGAAAATCCCAAATCTCTACATAGGAGGACTCTACTTAAAAATCGATGGGAACAAGGTCCAGAGTTAATCAGGAGAAGATTTTGAGGGAAGGAAGTGGTCAGTTCCAATTAAGACCTCGTGGAATGAAAAATGAGAAGTAATTAAGTAAGTAAGGAAGCCA ***************************************************************************************************.(((((.((((((..((((((...))))))..))).))).)))))((((((.....))))))....(((......)))**********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM343916 embryo	SRR902011 testis	GSM444067 head
...........................................................................................................................................GAATAAGGTCCAGCGTTAA.............................................................................................	19	2	1	1.00	1	1	0	0	0	0
...................................................................................................................................................TCCAGAGTTAATCAGGAGAAG...................................................................................	21	0	2	0.50	1	1	0	0	0	0
......................................................CAGGCAACACGTAAAGCAACT................................................................................................................................................................................	21	0	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................TGAGGAGAAGATTTTGCGG..........................................................................	19	2	2	0.50	1	1	0	0	0	0
..................................CACGTTCCTACTCGGCCATTC....................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
....................................................................................................................GGAGTCTACTTAAAAATCTTT..................................................................................................................	21	3	8	0.13	1	0	0	0	1	0
..............................................................................................................................................................................................................................CAGAAGTAATAAAGTAAGT..........	19	2	10	0.10	1	1	0	0	0	0
..........................................................................................................................................................................................GGTGAGTTACAATTAAGATC.............................................	20	3	11	0.09	1	1	0	0	0	0
........................................................................................................................................................................................................AAGACTTCGTGGTATGAAG................................	19	3	15	0.07	1	0	0	1	0	0
........................................................................................................................................................................................................ACGAACTAGTGGAATGAAA................................	19	3	20	0.05	1	0	0	1	0	0
........................................................................................................................................................................................................CTGACCTCGTGGTATGAAA................................	19	3	20	0.05	1	0	0	1	0	0
........................................................................................................................................................................................................AGGACCTCGTGGTATGAAG................................	19	3	20	0.05	1	0	0	1	0	0
........................................................................................................................................................................................................ATTAACTCGTGGAATGAAA................................	19	3	20	0.05	1	0	0	0	0	1
............................................................................................AAAATCGCAAAACTCAACAT...........................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
dp5	Unknown_singleton_3347:6548-6798 +	dps_2360	AG---ATCGAACTGAAGCAG----ACTTTACTCCAGCTTCAGTGCAAGGA--TGAGCCGGTAAGTCCGTTGTGCATT-----TCGTTGAGGAGATACTCATGACCCTTTT-AGGGTTTAGAGATGTATCCTCCTGAGATGAATTTTTAGCTACCCTTGTTCCAGGTCTCAATTAGTCC--------------------TCTTCTAAAACTCCCTTCCTTC-ACCAGTCAAGGTTAATTCTGGAGCACC-----------------------TTACTTTTTACTCT--TCATTAATTCA-TTCATT-CCTTCGGT
droPer2	scaffold_79:148956-149169 -		T--------------------------TTACACCGACTTTAGTAAA-GCATTCGACTCTGTAAG--------CCATTCCCCTTTAGCACATAAA----CTTGA-CCTTTT-AGGGTTTCCGCCCAA--CCTCCTGAGATGGATTTCTAGCTATCTTTGTTCTAGGTCTCAAAGAGTCC--------------------TCTTCAAAAACTCCTTCTCTTT-ACCAGTAAAGGT------------------------------T-TACCCCTTACTCTTCACACTCTTTATTAAT----GACTTG-CCTTCAGT
droWil2	scf2_1100000004970:31378-31545 -		GG---A-----------------------AA-------------------------------------------------------------------TGCTT-CCTTCT-AT---------------------GGGTTGGA-----------------------CACTTCTGACCAAAATTAGTATACCCTTTTGACTTTTTAAGTCTTCTTTTTCCGT-TTCCATTTCTGTGACTTCTGGTGTACCTCAAGGTAGTCAGCTT-GGCCCTCTGCTCTTCACACTATTTATTAAC----GATCTT-CCATCAGT
droVir3	scaffold_12945:62777-62917 +		TA---T-----------------------AT-------------------------------------------------------------------------------------------------CACCCTAAACTGCCTCTTTAGAT---------GCGAATTCCTTCGACTAC--------------------TTTTTCAAAACCACCCTGGCTTACTACCCAATTATCACATCTAAAATATG---------------T-AAACCTTTACTCCTTACTCTTTTTATAAAT----GGTCTC-CAGTCTGT
droMoj3	scaffold_1611:1090-1149 +		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGTAGTCATCTT-GGACCTTTACTCTTTACACTTTTTATAAAT----GATCTT-CCTTCTGT
droGri2	scaffold_15110:24388167-24388323 +		T---------------------------------------------------------------------------------------------------------------------------AA--CCTCCTTGCATAGATTTCTGATTATCTGAGTAACAA-----ATAAAGTTG--------------------TATTCAAAACATTACGTTCTAA-ACCTATCCTAGTTACCTCTGGGGTACCCCAGGGTAGTCATTTG-GATCCAGTGCTTTTTAATCTTTTTATTATA----GACATT-CCTTCTGT
droAna3	scaffold_13250:2477671-2477913 -		AC---TTCAAA------CTGATGTTATTTACACAGACTTTAGTAAA-GCATTTGATTCAGTTAG--------TCACTCACTCTTGTTGAGTAAA----CTAAA-TCTTTT-GGGATTCTTAACCGA--CCTCATTACGTGGATCTCCAGCTATTTAAATGGAAGAACACAGAGAGTCT--------------------TATTTAAAAATCAATACTCCCG-CTTAGTCCGTGCCACATCTGGAGTCCCTCATGGTAGCCATCTT-GGCCCATTATTATTCACTCTTTTTAT-----------------------
droBip1	scf7180000394914:29889-30128 +		AT---ATCAAA------CCGATGTAATTTACACAGACTTCAGCAAACGCATTTGATTCAGTAAA--------TCACTCACTCTTGTTGAGTAAA----CTGAA-TATGCT-GGGTTTTCCTAAAGA--CCTCTTAACGTGGATTTCCAGCTACCTAGATGGAAAGACACAAAGAGTCT--------------------TATTTAAAAACA-----------------------TACATCTGGCGTCCCTCAAGGAAGTCATCTT-GGCCCGTTATTATTTACGCTTTTTATAAAC----GACTTG-CCCCCTGC
droKik1	scf7180000301501:5680-5936 -		T------CAAA------CCGATGTGATTTACTCAGACTTCAGTAAA-GCTTTTGACCCGGTTAT--------TCACTCTCTTCTTGTAAAGAAG----CTTGA-CTTAATCAGGTTT-CC-GTCGA--TCTTCTTAAATGGATTTTGAGTTATTTGAGTGACAGATCTCAAAAGGTTC--------------------TGTTTAAAAATGCTCTATCCTA-ATTCCTTAGTGTCACATCTGGCGTCCCACAAGGTAGCCAGCTC-GTCCCGCTGCTATATACTTTGTTTATCAAT----GACCTC-CCGCTGGT
droFic1	scf7180000454002:10029-10280 -		A------------------GATGTCATTTAGACTGACTTTAGTATA-GCGTTTGACTCTGTAAA--------TCATTCACTTCTTGTAAGGAAA----CTTGA-CTTATT-AGGTTTCCCAGTTGA--TCTTTTAGAATGGATCTTAAGTTATCTGAATGGCAGGATACAAAGGGTCC--------------------TTTTTAAAAATTCACTTTCTTG-TGTTCTTCGAGTCACCTCCGGCGTCCCTCAAGGGAGCCACCTT-GGCCCGCTACTATTTACCTTATTTATTAAT----GTCCTT-CCATTAGT
droEle1	scf7180000488281:3974-4234 -		AT---GCCAAA------CTGACGTTATTTTTACTAACTTCAGCAAG-GCATTTGATTCAGTAAG--------CCATAGCCTTCTCCTTCATAAA----CTATC-TCTTCT-TGGTTTTCCACCTAT--TTTACTTAACTGGATTTCTGCCTATCTTTCAAACAGAACTCAACGCGTTC--------------------TCTTCAATAATCAACTTTCCTC-CGTCGTAAATGCTTTTTCTGGTGTCCCCCAAGGAAGTCATCTG-GGGCCACTACTTTTCGTTCTTTTTATTAAT----GATCTT-CTAAAAGT
droRho1	scf7180000777797:514-754 +		A--------AA------CAGACGTCATTTACACTGACTTTAGTAAA-GCATTTGACTCTGTAAA--------TCACTTACTTCTCATTCAAAAA----CTTAA-CCTTTT-AGGTTTTCCAGTTGA--TCTGCTTAAATGGATTTCAAGTTATCTAAATGGCAGGTCACAACGGGTCC--------------------TTTTTAAAA----------------TTCTCCGTGTTACCTCCGGTGTCCCACAAGGGAGCCATCTG-GATCCGTTACTTTTTACATTATTTATTAAC----GATCTT-CCCTCAAT
droBia1	scf7180000302087:228185-228445 +		TC---GTCAGA------CTTATGTGGTTTACACTGATTTCAGTAAG-GTGTTTGATTCTGTAAA--------CCGTCCGATTTTAGTTCGGAAA----TGGGA-CCTTTT-AGGGTTTCCTTATGA--TTTTCTTAGGCGGATCTTAAGTTATTTGAATGGCAAGACTCAAGGGGTCA--------------------TTTTTAAAAACAATTTATCATC-CCTAATCCGAGTTAAGTCCGGTGTACATCAAGGAAGTCATCTT-GGTCCGCTCCTGCTTACATTATTTATAAAT----TGCCTT-CCTCTAGT
droTak1	scf7180000414752:18042-18305 +		ACATCGTCAGA------CTGATGTGGCTTACACTGATTTCAGTAAG-GCGTTTGATTCTGTAAA--------CCATTCGATTTTAGTTCGGAAA----TTGGA-CCTTTT-GGGGTTTCCTGATGA--TCTTCTTAGGTGGATCTTAAGTTATTTGAACGGCAGGACTCAAAGGGTCA--------------------TTTTTAAAAACTCTTTATCATC-CCTAATCCGAGTTACGTCCGGTGTACCACAAGGAAGTCTTCTT-GGTCCGCTCCTGTTTACATTATTTATTAAT----GACCTT-CCTCTAGT
droEug1	scf7180000409264:9893-10139 +		T--------------------------TTACACTGACTTCAGTAAA-GCATTTGACTCCGTGAA--------TCACGTTATTCTTTTAGAAAAA----CTCGA-TCTTAT-TGGTTTTCCTACTAA--TCTCCTGGGTTGGATTATCAGTTACCTCAA-GGTAGAACGAAACGAGTCT--------------------T-TTTAAAAATTCAGTGTGTGC-TTTAGTCTATGCTTCCTCCGG-ATCCCTCAGGGGAGCCACCGTGGGACCGTTACTTTTTACTTTATTCATTAATGAATGACCTCTCCTTGGCT
dm3	chrU:2215001-2215240 +		AA---ATAATCTTGAAGCAGATTTCATCTTCTCTGACTTTAGTAAA-GCATTTGACTCTGTTAA--------TCTTACG-TTCTAGTACGGAAA----CTTGA-TATTTT-AGGTTTA---ACTAA--TCTTCTAATTTGGATTTCAAGCTATGTAAATGCCAGGACACAACAAGTCC--------------------TCTTTAAAAACTCTCTATCTT------------------------GTCCCATAAGGGAGCCATCTT-GGCCCGCTTCTTTTTACCTTATTCATTAAC----GACCTC-CCCTTAGT
droSim2	node_21765:10209-10368 -		A-------------------------------------------------------------------------------------------------------------------------------TCCTCTAAATTGGATTTTAAGCTATCTAAATGGCAGGACGCAAAAAGTCC--------------------TCTTTAAAAATTCTTTATCTTG-TATTCTTCGATTCACATCCGGTGTCCCACAAGGGAGCCACATT-GGTCCGCTTCTTTTTACCTTATTTATTACC----GACCTC-CCCTTAGT
droSec2	scaffold_5535:1050-1274 -		T--------------------------CTACACTGACTTTAGTAAA-GCCTTTGACTCTGTTAA--------TCATTACATTCTAGTAAGAAAA----CTTGA-TCTATTAGGGTTTCCCTGTTGA--TCTTCTAAATTGGATTTCAAGTTATCTGAATGGCAGGACGCAAAAAGTCC--------------------TCTTAAAAAATTCTCTTTCTTG-TATTC------TCACATCCGGTGTGCCACAAGGGAGCCACCTT-GGTCCGCTTCTTT--------------ACA----GACCTC-CCCTTAGT
droYak3	2L:20592785-20593003 +		T----------------------------------------------------GACTCTGTTGT--------GCATTCACTTTTAGTAAGGAAA----CTTGA-TTTATT-AGGTTTCCCTGTTGA--TCTCCTAAACTGGATTCTAAGTTATCTGAATGGCAGGACGCAACGGGTCC--------------------TCTTTAAAAATTATCTTTCTTG-TATTCTCCGAGTCACATCCGGTGTCCAACAAGGGAGTCACCTA-GGTCCGCTCCTTTTCCCCTTATTTATTAAC----GACCTT-CCTCTAAT
droEre2	scaffold_4845:891301-891434 +		C---------------------------------------------------------------------------------------------------------------------------------TTCTAAATTGGATTTTCAGTTATCTTAATGGCAGGACGCAACGAGTCC--------------------TCTTTAAAAATGCTCTTTCTTG-TATTCTCCGAGTCACATCCGGC-------------------------ACCTTCCTCTTTACTTAATTTATTAAC----GGCCTT-TCCTTGGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

AG---ATCGAACTGAAGCAG----ACTTTACTCCAGCTTCAGTGCAAGGA--TGAGCCGGTAAGTCCGTTGTGCATT-----TCGTTGAGGAGATACTCATGACCCTTTT-AGGGTTTAGAGATGTATCCTCCTGAGATGAATTTTTAGCTACCCTTGTTCCAGGTCTCAATTAGTCC--------------------TCTTCTAAAACTCCCTTCCTTC-ACCAGTCAAGGTTAATTCTGGAGCACC-----------------------TTACTTTTTACTCT--TCATTAATTCA-TTCATT-CCTTCGGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................TTTAGCTACCCTTGTTCCAGG.....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TGAGGAGATACTCATGACCCT...............................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................T-----TCGTTGAGGAGATACTCATG....................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CATT-----TCGTTGAGGAGATACTC.......................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

T--------------------------TTACACCGACTTTAGTAAA-GCATTCGACTCTGTAAG--------CCATTCCCCTTTAGCACATAAA----CTTGA-CCTTTT-AGGGTTTCCGCCCAA--CCTCCTGAGATGGATTTCTAGCTATCTTTGTTCTAGGTCTCAAAGAGTCC--------------------TCTTCAAAAACTCCTTCTCTTT-ACCAGTAAAGGT------------------------------T-TACCCCTTACTCTTCACACTCTTTATTAAT----GACTTG-CCTTCAGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................................TATTAAT----GACTTG-CCTTCAGT	21	20	0.65	13	0	13	0	0	0	0
..............................CACCGACTTTAGTAAA-GCATTC.....................................................................................................................................................................................................................................................................	22	20	0.15	3	3	0	0	0	0	0
..................................................................................TTAGCACATAAA----CTTGA-CCTT..............................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
...................................................TCGACTCTGTAAG--------CCATTCCC..........................................................................................................................................................................................................................................	21	11	0.09	1	1	0	0	0	0	0
.............................................A-GCATTCGACTCTGTAAG--------CCA...............................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................CTCTTTATTAAT----GACTTG-CCT.....	21	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................GCTATCTTTGTTCTAGGTC...................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...................................ACTTTAGTAAA-GCATTCGACTCTGTAA...........................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0

droWil2

GG---A-----------------------AA-------------------------------------------------------------------TGCTT-CCTTCT-AT---------------------GGGTTGGA-----------------------CACTTCTGACCAAAATTAGTATACCCTTTTGACTTTTTAAGTCTTCTTTTTCCGT-TTCCATTTCTGTGACTTCTGGTGTACCTCAAGGTAGTCAGCTT-GGCCCTCTGCTCTTCACACTATTTATTAAC----GATCTT-CCATCAGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................ACACTATTTATTAAC----GATCTT-CCATCAG.	28	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................TTCCATTTCTGTGACTTCTGGTGTA....................................................................	25	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................TTCACACTATTTATTAAC----GATCTT-CC......	26	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................TCTGACCAAAATTAGTATACCC...........................................................................................................................	22	17	0.06	1	1	0	0	0	0
........................................................................................................................................................................................................................................TGACTTCTGGTGTACCTCAAGGT...........................................................	23	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................TTAAGTCTTCTTTTTCCGT-TTCCAT.......................................................................................	25	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................CACTTCTGACCAAAATTAGT.................................................................................................................................	20	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................ACACTATTTATTAAC----GATCTT-CC......	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................CTCTGCTCTTCACACTATTTATTAA....................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................CTTCTGGTGTACCTCAAGGTAGTC.......................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................TTCCATTTCTGTGACTTCTGGTG......................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................TTTTCCGT-TTCCATTTCTGTGACTTCTGG........................................................................	29	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................GACTTCTGGTGTACCTCAAGGTAG.........................................................	24	20	0.05	1	0	0	0	1	0

droVir3

TA---T-----------------------AT-------------------------------------------------------------------------------------------------CACCCTAAACTGCCTCTTTAGAT---------GCGAATTCCTTCGACTAC--------------------TTTTTCAAAACCACCCTGGCTTACTACCCAATTATCACATCTAAAATATG---------------T-AAACCTTTACTCCTTACTCTTTTTATAAAT----GGTCTC-CAGTCTGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................TTCGACTAC--------------------TTTTTCAAAACCACCC....................................................................................................	25	20	2.55	51	0	0	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTT..............................................................................................	23	20	1.00	20	0	0	0	0	2	0	2	0	0	0	0	0	1	1	0	0	0	0	0	0	3	0	0	2	0	0	3	0	0	0	0	0	0	0	0	1	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTTAC............................................................................................	25	20	0.90	18	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	4	0	0	0	0	0	0	0	0	4	1	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TCGACTAC--------------------TTTTTCAAAACCACCCTG..................................................................................................	26	20	0.50	10	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTTA.............................................................................................	24	20	0.35	7	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTCGACTAC--------------------TTTTTCAAAACCACCCTGG.................................................................................................	28	20	0.30	6	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTCGACTAC--------------------TTTTTCAAAACCACCCTGGC................................................................................................	29	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTACTCCTTACTCTTTTTATAAAT----...............	24	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTACTCCTTACTCTTTTTATAAA....................	23	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TCGACTAC--------------------TTTTTCAAAACCACCCTGG.................................................................................................	27	20	0.15	3	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCT...............................................................................................	22	20	0.15	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTTT.............................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AC--------------------TTTTTCAAAACCACCCTGGCTT..............................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTCCTTCGACTAC--------------------TTTTTCAAAACCACCC....................................................................................................	29	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TCGACTAC--------------------TTTTTCAAAACCACCCTGGCT...............................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTTACT...........................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTTACC...........................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGG.................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CGACTAC--------------------TTTTTCAAAACCACCCTGGCT...............................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTTTT............................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TAC--------------------TTTTTCAAAACCACCCTGGCT...............................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CTTCGACTAC--------------------TTTTTCAAAACCACCC....................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTTG.............................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TCGACTAC--------------------TTTTTCAAAACCACCCTGGC................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AC--------------------TTTTTCAAAACCACCCTGGCT...............................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCCTTCGACTAC--------------------TTTTTCAAA...........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CGACTAC--------------------TTTTTCAAAACCACCCTGGC................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTTCAAAACCACCCTGGCTTA.............................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GACTAC--------------------TTTTTCAAAACCACCCTGGCT...............................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C--------------------TTTTTCAAAACCACCCTGGCTA..............................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTTCAAAACCACCCTGGCTTAC............................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCCTTCGACTAC--------------------TTTTTCAAAACC........................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AC--------------------TTTTTCAAAACCACCCTGG.................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGTAGTCATCTT-GGACCTTTACTCTTTACACTTTTTATAAAT----GATCTT-CCTTCTGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

T---------------------------------------------------------------------------------------------------------------------------AA--CCTCCTTGCATAGATTTCTGATTATCTGAGTAACAA-----ATAAAGTTG--------------------TATTCAAAACATTACGTTCTAA-ACCTATCCTAGTTACCTCTGGGGTACCCCAGGGTAGTCATTTG-GATCCAGTGCTTTTTAATCTTTTTATTATA----GACATT-CCTTCTGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

AC---TTCAAA------CTGATGTTATTTACACAGACTTTAGTAAA-GCATTTGATTCAGTTAG--------TCACTCACTCTTGTTGAGTAAA----CTAAA-TCTTTT-GGGATTCTTAACCGA--CCTCATTACGTGGATCTCCAGCTATTTAAATGGAAGAACACAGAGAGTCT--------------------TATTTAAAAATCAATACTCCCG-CTTAGTCCGTGCCACATCTGGAGTCCCTCATGGTAGCCATCTT-GGCCCATTATTATTCACTCTTTTTAT-----------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................TAGTCCGTGCCACATCTGGAGTCCC..................................................................	25	19	0.32	6	2	2	0	0	0	2
...............................................................................................................................................................................................................................TAGTCCGTGCCACATCTGGAGTCC...................................................................	24	20	0.15	3	1	2	0	0	0	0
................................................................................................................................................................................................................TCAATACTCCCG-CTTAGTCCGTGC.................................................................................	24	20	0.15	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................TAGTCCGTGCCACATCTGGAGTCCCT.................................................................	26	19	0.11	2	1	0	0	0	0	1
.....................TGTTATTTACACAGACTTTAGTAAA-GC.........................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................TCCGTGCCACATCTGGAGTCCCTC................................................................	24	19	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................G-CTTAGTCCGTGCCACATCTGGAGTCCC..................................................................	28	19	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................TCT--------------------TATTTAAAAATCAATACTCCCG-C............................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................TTTAAATGGAAGAACACAGAGAGTCT--------------------....................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................TCAATACTCCCG-CTTAGTCCGTGCCAC..............................................................................	27	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................AAAATCAATACTCCCG-CTTAGTCCGTGC.................................................................................	28	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................CT--------------------TATTTAAAAATCAATACTCCCG-CT...........................................................................................	26	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................TCATTACGTGGATCTCCAGCTATT................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
............................................................................................................................GA--CCTCATTACGTGGATCTCCAGCTATT................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................TCCCG-CTTAGTCCGTGCCACATCTGGAG......................................................................	28	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................CCGA--CCTCATTACGTGGATCTCCAGC....................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0

droBip1

AT---ATCAAA------CCGATGTAATTTACACAGACTTCAGCAAACGCATTTGATTCAGTAAA--------TCACTCACTCTTGTTGAGTAAA----CTGAA-TATGCT-GGGTTTTCCTAAAGA--CCTCTTAACGTGGATTTCCAGCTACCTAGATGGAAAGACACAAAGAGTCT--------------------TATTTAAAAACA-----------------------TACATCTGGCGTCCCTCAAGGAAGTCATCTT-GGCCCGTTATTATTTACGCTTTTTATAAAC----GACTTG-CCCCCTGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T------CAAA------CCGATGTGATTTACTCAGACTTCAGTAAA-GCTTTTGACCCGGTTAT--------TCACTCTCTTCTTGTAAAGAAG----CTTGA-CTTAATCAGGTTT-CC-GTCGA--TCTTCTTAAATGGATTTTGAGTTATTTGAGTGACAGATCTCAAAAGGTTC--------------------TGTTTAAAAATGCTCTATCCTA-ATTCCTTAGTGTCACATCTGGCGTCCCACAAGGTAGCCAGCTC-GTCCCGCTGCTATATACTTTGTTTATCAAT----GACCTC-CCGCTGGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A------------------GATGTCATTTAGACTGACTTTAGTATA-GCGTTTGACTCTGTAAA--------TCATTCACTTCTTGTAAGGAAA----CTTGA-CTTATT-AGGTTTCCCAGTTGA--TCTTTTAGAATGGATCTTAAGTTATCTGAATGGCAGGATACAAAGGGTCC--------------------TTTTTAAAAATTCACTTTCTTG-TGTTCTTCGAGTCACCTCCGGCGTCCCTCAAGGGAGCCACCTT-GGCCCGCTACTATTTACCTTATTTATTAAT----GTCCTT-CCATTAGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AT---GCCAAA------CTGACGTTATTTTTACTAACTTCAGCAAG-GCATTTGATTCAGTAAG--------CCATAGCCTTCTCCTTCATAAA----CTATC-TCTTCT-TGGTTTTCCACCTAT--TTTACTTAACTGGATTTCTGCCTATCTTTCAAACAGAACTCAACGCGTTC--------------------TCTTCAATAATCAACTTTCCTC-CGTCGTAAATGCTTTTTCTGGTGTCCCCCAAGGAAGTCATCTG-GGGCCACTACTTTTCGTTCTTTTTATTAAT----GATCTT-CTAAAAGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A--------AA------CAGACGTCATTTACACTGACTTTAGTAAA-GCATTTGACTCTGTAAA--------TCACTTACTTCTCATTCAAAAA----CTTAA-CCTTTT-AGGTTTTCCAGTTGA--TCTGCTTAAATGGATTTCAAGTTATCTAAATGGCAGGTCACAACGGGTCC--------------------TTTTTAAAA----------------TTCTCCGTGTTACCTCCGGTGTCCCACAAGGGAGCCATCTG-GATCCGTTACTTTTTACATTATTTATTAAC----GATCTT-CCCTCAAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TC---GTCAGA------CTTATGTGGTTTACACTGATTTCAGTAAG-GTGTTTGATTCTGTAAA--------CCGTCCGATTTTAGTTCGGAAA----TGGGA-CCTTTT-AGGGTTTCCTTATGA--TTTTCTTAGGCGGATCTTAAGTTATTTGAATGGCAAGACTCAAGGGGTCA--------------------TTTTTAAAAACAATTTATCATC-CCTAATCCGAGTTAAGTCCGGTGTACATCAAGGAAGTCATCTT-GGTCCGCTCCTGCTTACATTATTTATAAAT----TGCCTT-CCTCTAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACATCGTCAGA------CTGATGTGGCTTACACTGATTTCAGTAAG-GCGTTTGATTCTGTAAA--------CCATTCGATTTTAGTTCGGAAA----TTGGA-CCTTTT-GGGGTTTCCTGATGA--TCTTCTTAGGTGGATCTTAAGTTATTTGAACGGCAGGACTCAAAGGGTCA--------------------TTTTTAAAAACTCTTTATCATC-CCTAATCCGAGTTACGTCCGGTGTACCACAAGGAAGTCTTCTT-GGTCCGCTCCTGTTTACATTATTTATTAAT----GACCTT-CCTCTAGT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T--------------------------TTACACTGACTTCAGTAAA-GCATTTGACTCCGTGAA--------TCACGTTATTCTTTTAGAAAAA----CTCGA-TCTTAT-TGGTTTTCCTACTAA--TCTCCTGGGTTGGATTATCAGTTACCTCAA-GGTAGAACGAAACGAGTCT--------------------T-TTTAAAAATTCAGTGTGTGC-TTTAGTCTATGCTTCCTCCGG-ATCCCTCAGGGGAGCCACCGTGGGACCGTTACTTTTTACTTTATTCATTAATGAATGACCTCTCCTTGGCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

AA---ATAATCTTGAAGCAGATTTCATCTTCTCTGACTTTAGTAAA-GCATTTGACTCTGTTAA--------TCTTACG-TTCTAGTACGGAAA----CTTGA-TATTTT-AGGTTTA---ACTAA--TCTTCTAATTTGGATTTCAAGCTATGTAAATGCCAGGACACAACAAGTCC--------------------TCTTTAAAAACTCTCTATCTT------------------------GTCCCATAAGGGAGCCATCTT-GGCCCGCTTCTTTTTACCTTATTCATTAAC----GACCTC-CCCTTAGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................TTATTCATTAAC----GACCTC-CCCTTAGT	26	16	8.56	137	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	6	47	36	1	5	19	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTATTCATTAAC----GACCTC-CCCTTA..	24	20	6.85	137	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	59	53	0	0	20	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CACAACAAGTCC--------------------TCTTTAAAAACTCT......................................................................................................	26	2	4.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTATTCATTAAC----GACCTC-CCCTTAG.	25	20	3.95	79	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	31	22	1	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................TACGGAAA----CTTGA-TATTTT-AGGTT......................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTATCTT------------------------GTCCCATAAGGGAGCCAT.....................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTATCTT------------------------GTCCCATAAGGGAGCCATC....................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................TTCTAATTTGGATTTCAAGCTATC................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................TTAGTAAA-GCATTTGACTCTGTTA...........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CAGGACACAACAAGTCC--------------------TCTTTAAAA...........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AGTAAA-GCATTTGACTCTGTT............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TTACCTTATTCATTAAC----GACCTC-CCCT....	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A-------------------------------------------------------------------------------------------------------------------------------TCCTCTAAATTGGATTTTAAGCTATCTAAATGGCAGGACGCAAAAAGTCC--------------------TCTTTAAAAATTCTTTATCTTG-TATTCTTCGATTCACATCCGGTGTCCCACAAGGGAGCCACATT-GGTCCGCTTCTTTTTACCTTATTTATTACC----GACCTC-CCCTTAGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................TCCGGTGTCCCACAAGGGAGC........................................................	21	20	5.05	101	0	0	0	0	94	0	0	0	0	0	7	0	0	0	0	0	0
........................................................................................................................................................TCTAAATGGCAGGACGCAAAAAGT..........................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTATCTAAATG..........................................................................................................................................................	26	2	2.00	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
..........................................................................................................................................................TAAATGGCAGGACGCAAAAAGTCC--------------------TC..................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTATCTAAA............................................................................................................................................................	24	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTATCTAAATGGC........................................................................................................................................................	28	2	1.50	3	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TATCTTG-TATTCTTCGATTCACAT............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTCGATTCACATCCGGTGTCCCACAAGGGA..........................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTATCTAAATGGCAGGA....................................................................................................................................................	32	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TCTTCGATTCACATCCGGTGTCCCAC................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................TCTAAATGGCAGGACGCAAAAAG...........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................TAAGCTATCTAAATGGCAGGACGCAAAA.............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTATCTTG-TATTCTTCGATTCACA.............................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TCTAAATGGCAGGACGCAAAAAGTC.........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTG-TATTCTTCGATTCACATCCGGT.......................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TCTAAATGGCAGGACGCAAAAAGTCC--------------------TC..................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGC....................................................................................................................................................................	16	9	0.78	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCT...................................................................................................................................................................	17	9	0.78	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTAT.................................................................................................................................................................	19	8	0.75	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
......................................................................................................................................................................CGCAAAAAGTCC--------------------TCTTTAAAAATT........................................................................................................	24	15	0.67	10	0	0	0	0	0	0	6	0	2	2	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TACCTTATTTATTACC----GACCTC-CCC.....	25	5	0.60	3	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTATCT...............................................................................................................................................................	21	8	0.50	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAGGGAGCCACATT-GGTCCGCTT........................................	23	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAGGGAGCCACATT-GGTCCGCTTC.......................................	24	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................GGATTTTAAGCTATCTAAATGGCA.......................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TTCACATCCGGTGTCCCACAAGGGAGC........................................................	27	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CATCCGGTGTCCCACAAGGG...........................................................	20	20	0.30	6	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTATC................................................................................................................................................................	20	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AGGGAGCCACATT-GGTCCGC..........................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TGTCCCACAAGGGAGCCACATT-GGTC.............................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CACAAGGGAGCCACATT-GGTCCGC..........................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CACAAGGGAGCCACATT-GGTCCGCT.........................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAGCTA..................................................................................................................................................................	18	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CCACAAGGGAGCCACATT-GGTCCG...........................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CCACAAGGGAGCCACATT-GGTCCT...........................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AAGGGAGCCACATT-GGT..............................................	17	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................CCTCTAAATTGGATTTTAAGCTATC................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................TGGCAGGACGCAAAAAGT..........................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0
...................................................................................................................................TCTAAATTGGATTTTAAGCTA..................................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TCACATCCGGTGTCCCACAAGGGAGC........................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................AAGTCC--------------------TCTTTAAAAA..........................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................CGCAAAAAGTCC--------------------TCTTTAAAAATTCT......................................................................................................	26	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ACGCAAAAAGTCC--------------------TCTTTAAAAATTC.......................................................................................................	26	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................TGGCAGGACGCAAAAAGTCC--------------------TCTTT...............................................................................................................	25	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGGCAGGACGCAAAAAGTCC--------------------TCTTTAAAA...........................................................................................................	29	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................GGCAGGACGCAAAAAGTCC--------------------TCTTTA..............................................................................................................	25	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAATTGGATTTTAAG.....................................................................................................................................................................	15	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................CGCAAAAAGTCC--------------------TCTTTAAAAAT.........................................................................................................	23	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................TCTTTAAAAATTCTTT....................................................................................................	16	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TT-GGTCCGCTTCTTTTTACCT..............................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CCGGTGTCCCACAAGGGAGCC.......................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................TGGCAGGACGCAAAAAG...........................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................ACATCCGGTGTCCCACAAGGGAGCC.......................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................GGCAGGACGCAAAAAG...........................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................TGGCAGGACGCAAAAA............................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................TGGCAGGACGCAAAAAGTC.........................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................ATGGCAGGACGCAAAAAA...........................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CCGGTGTCCCACAAGGGA..........................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................T-GGTCCGCTTCTTTTTACCTTA............................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................TCCGGTGTCCCACAAGGGAGCCA......................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

T--------------------------CTACACTGACTTTAGTAAA-GCCTTTGACTCTGTTAA--------TCATTACATTCTAGTAAGAAAA----CTTGA-TCTATTAGGGTTTCCCTGTTGA--TCTTCTAAATTGGATTTCAAGTTATCTGAATGGCAGGACGCAAAAAGTCC--------------------TCTTAAAAAATTCTCTTTCTTG-TATTC------TCACATCCGGTGTGCCACAAGGGAGCCACCTT-GGTCCGCTTCTTT--------------ACA----GACCTC-CCCTTAGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................................................TTG-TATTC------TCACATCCGGTGTGC...................................................................	23	2	0.50	1	1	0	0	0
......................................................................................................................................AAATTGGATTTCAAGTTATCTGA.............................................................................................................................................................	23	4	0.25	1	1	0	0	0
.........................................................CTGTTAA--------TCATTACATTCTAGTAAGA...............................................................................................................................................................................................................................	26	4	0.25	1	1	0	0	0
......................................................................................................................................AAATTGGATTTCAAGTTATCTGAATGGC........................................................................................................................................................	28	4	0.25	1	1	0	0	0
T--------------------------CTACACTGACTTTAGTAAA-GCCTT......................................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0
......................................................................................................................................................TATCTGAATGGCAGGACGCAAAAAG...........................................................................................................................................	25	20	0.10	2	2	0	0	0
.................................................................................................................................CTTCTAAATTGGATTTCA.......................................................................................................................................................................	18	20	0.05	1	1	0	0	0
........................................................................................................................................................TCTGAATGGCAGGACGCAAAAAGTCC--------------------TC..................................................................................................................	28	20	0.05	1	0	0	1	0
........................................................................................................................................................TCTGAATGGCAGGACGCAAAAAGTCC--------------------....................................................................................................................	26	20	0.05	1	0	0	1	0
......................................................................................................................................................TATCTGAATGGCAGGACGCAAAAAGA..........................................................................................................................................	26	20	0.05	1	1	0	0	0

droYak3

T----------------------------------------------------GACTCTGTTGT--------GCATTCACTTTTAGTAAGGAAA----CTTGA-TTTATT-AGGTTTCCCTGTTGA--TCTCCTAAACTGGATTCTAAGTTATCTGAATGGCAGGACGCAACGGGTCC--------------------TCTTTAAAAATTATCTTTCTTG-TATTCTCCGAGTCACATCCGGTGTCCAACAAGGGAGTCACCTA-GGTCCGCTCCTTTTCCCCTTATTTATTAAC----GACCTT-CCTCTAAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................TTCCCTGTTGA--TCTCCTAAAC................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTG-TATTCTCCGAGTCACATCCGG........................................................................	24	20	0.50	10	0	9	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TAAGTTATCTGAATGGCAGGACGCA................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TAAGTTATCTGAATGGCAGGA....................................................................................................................................................	21	20	0.15	3	0	1	0	0	0	0	2	0	0	0	0
...............................................................................................................................................TCTAAGTTATCTGAATGGCAGGACGC.................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TAAGTTATCTGAATGGCAGGAC...................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGAATGGCAGGACGCAACGGG...........................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTCTAAGTTATCTGAATGGCAGGA....................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................AGTTATCTGAATGGCAGGACGCAAC..............................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................GA-TTTATT-AGGTTTCCCTGTTGA--..........................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGAATGGCAGGACGCAACGGGTCC--------------------....................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................AGTTATCTGAATGGCAGGACGCAACG.............................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGAATGGCAGGACGCAACGGGTCC--------------------TCT.................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGAATGGCAGGACGCAACGGGTC.........................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTCTAAGTTATCTGAATGGCAGG.....................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTTCTTG-TATTCTCCGAGTCACATC...........................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................GTTATCTGAATGGCAGGACGCAACG.............................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTG-TATTCTCCGAGTCACATC...........................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TAAGTTATCTGAATGGCAG......................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TATT-AGGTTTCCCTGTTGA--TCTCCT....................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................GCAGGACGCAACGGGTCC--------------------TC..................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................AGTTATCTGAATGGCAGGACGC.................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................GATTCTAAGTTATCTGAATGGCAG......................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TCTGAATGGCAGGACGCAACGGGTCC--------------------TC..................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTG-TATTCTCCGAGTCACATCCG.........................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TCTAAGTTATCTGAATGGCAGGACGCA................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................AGTTATCTGAATGGCAGGACGCAA...............................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTTTCTTG-TATTCTCCGAGTCAC..............................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

C---------------------------------------------------------------------------------------------------------------------------------TTCTAAATTGGATTTTCAGTTATCTTAATGGCAGGACGCAACGAGTCC--------------------TCTTTAAAAATGCTCTTTCTTG-TATTCTCCGAGTCACATCCGGC-------------------------ACCTTCCTCTTTACTTAATTTATTAAC----GGCCTT-TCCTTGGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dps_2360

Unknown_singleton_3347:6598-6748 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.2	-20.9	-20.7