ID:

dps_2335

 Coordinate:

Unknown_singleton_2748:23056-23206 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.9 -14.8 -14.5

Flybase annnotation

intron [Dpse\GA27987-in]; CDS [Dpse\GA27987-cds]; exon [dpse_GLEANR_7232:3]; intron [Dpse\GA27987-in]

No Repeatable elements found

mature
  1. Unknown_group_737:1826-1852 -
  2. Unknown_group_322:12479-12505 -
  3. dps_2335  Unknown_singleton_2748:23065-23091 -
  4. Unknown_singleton_2748:28660-28686 -
  5. Unknown_singleton_2748:34360-34386 -
  6. Unknown_singleton_2748:39771-39797 -
  7. Unknown_singleton_2331:412-438 -
star
  1. Unknown_group_14:44372-44399 -
  2. XL_group1e:797162-797189 -
  3. Unknown_group_7:118123-118150 -
  4. Unknown_group_33:1072-1099 -
  5. 3:260131-260158 -
  6. 3:13999408-13999435 -
  7. 2:17996727-17996754 -
  8. 4_group1:267449-267476 -
  9. 4_group3:5910311-5910338 -
  10. XL_group1a:4409618-4409645 -
  11. dps_2335  Unknown_singleton_2748:23129-23156 -
  12. Unknown_singleton_2748:28724-28751 -
  13. Unknown_singleton_1718:1349-1376 -
  14. Unknown_singleton_1996:431-458 -
  15. Unknown_singleton_892:900-927 -
  16. Unknown_group_365:3384-3411 -
  17. Unknown_group_218:10964-10991 -
  18. Unknown_singleton_2439:2375-2402 -
  19. Unknown_singleton_3791:639-666 -
  20. Unknown_singleton_78:1122-1149 -
  21. Unknown_group_132:12680-12707 +
  22. Unknown_group_78:23365-23392 +
  23. Unknown_group_12:3424-3451 +
  24. Unknown_group_108:18187-18214 +
  25. XL_group1e:9869477-9869504 +
  26. Unknown_singleton_1968:1528-1555 +
  27. Unknown_group_148:4608-4635 +
  28. 2:12114656-12114683 +
  29. 2:24620253-24620280 +
  30. XL_group3a:1670991-1671018 +
  31. 4_group4:5844984-5845011 +
  32. 4_group4:6018883-6018910 +
  33. 4_group4:6524951-6524978 +
  34. Unknown_group_289:797-824 +
  35. XL_group1a:820314-820341 +
  36. XL_group1a:6862394-6862421 +
  37. Unknown_singleton_2473:1035-1062 +
  38. Unknown_singleton_1347:1193-1220 +
  39. Unknown_singleton_2263:239-266 +
  40. Unknown_singleton_2992:863-890 +
  41. Unknown_group_54:34361-34388 +
  42. XL_group3b:71052-71079 +
  43. Unknown_group_146:9835-9862 +
  44. Unknown_group_52:11139-11166 +
  45. Unknown_group_52:14587-14614 +
  46. Unknown_singleton_959:6642-6669 +
  47. 3:754609-754636 +
  48. Unknown_group_188:9095-9122 +
  49. 4_group4:5951700-5951727 +
  50. 4_group4:6574934-6574961 +
  51. XR_group6:10245222-10245249 +
  52. XL_group1a:1445273-1445300 +
  53. XL_group1a:3171285-3171312 +
  54. Unknown_singleton_695:1093-1120 +
  55. Unknown_singleton_2050:451-478 +
  56. Unknown_singleton_3287:1858-1885 +
  57. Unknown_singleton_424:1901-1928 +
  58. Unknown_singleton_421:165-192 +
  59. Unknown_singleton_769:576-603 +
  60. Unknown_singleton_3730:1669-1696 +
  61. Unknown_group_78:22336-22363 -
  62. Unknown_group_36:4227-4254 -
  63. Unknown_group_36:9247-9274 -
  64. Unknown_group_320:7468-7495 -
  65. Unknown_group_27:17143-17170 -
  66. 2:29123948-29123975 -
  67. Unknown_group_194:11429-11456 -
  68. 4_group4:5723060-5723087 -
  69. 4_group4:5895182-5895209 -
  70. Unknown_group_669:13231-13258 -
  71. XL_group1a:708947-708974 -
  72. Unknown_singleton_2748:34424-34451 -
  73. Unknown_singleton_2748:39835-39862 -
  74. Unknown_singleton_2909:1209-1236 -
  75. Unknown_singleton_1208:4128-4155 -
  76. Unknown_group_211:7404-7431 -
  77. Unknown_singleton_1320:1914-1941 -
  78. Unknown_singleton_2331:476-503 -
  79. Unknown_singleton_2510:465-492 -
  80. XL_group1e:3234040-3234067 +
  81. Unknown_group_555:9193-9220 +
  82. Unknown_group_26:45468-45495 +
  83. 3:437025-437052 +
  84. 3:11531550-11531577 +
  85. 2:8586865-8586892 +
  86. Unknown_group_181:3350-3377 +
  87. Unknown_group_223:10555-10582 +
  88. Unknown_singleton_1597:4128-4155 +
  89. Unknown_group_270:7157-7184 +
  90. 4_group3:5740673-5740700 +
  91. Unknown_group_602:9743-9770 +
  92. Unknown_group_22:27907-27934 +
  93. XL_group1a:1306073-1306100 +
  94. XL_group1a:2156185-2156212 +
  95. Unknown_singleton_3202:401-428 +
  96. Unknown_singleton_1203:712-739 +
  97. Unknown_singleton_3971:418-445 +
  98. Unknown_singleton_3764:532-559 +
  99. Unknown_singleton_375:1782-1809 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##########################------------------------
AAGGAACAAATTAATTTTCAGTGGCTACGCAGCGCCTGACGTCACACTCAGACTGATTTTATGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTACATACTGACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGTAACTCACAACGTTCCCCCTCGTTCTTTCTCCAACCAACACAATAAATTCAGTTTTAGGAACTTTCACTTGCACGGCTATCGAGGTATGACTGTGACGCAGCGTTAAT
****************************************************************************************************............(((...((((((.(((((((((...)))))...)))))))..))).)))...............................*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 M059
embryo
 SRR902011
testis
 M022
male body		 GSM444067
head
 M062
head
 SRR902012
CNS imaginal disc
 GSM343916
embryo
...........................CGAAGCGTCTGATGTCACACT........................................................................................................................................................................................................... 21 3 3 49.33 148 110 0 34 0 0 4 0 0 0 0
...........................CGAAGCGTCTGATGTCACAC............................................................................................................................................................................................................ 20 3 4 40.75 163 123 0 38 0 0 0 2 0 0 0
............................GAAGCGTCTGATGTCACACT........................................................................................................................................................................................................... 20 3 8 33.13 265 209 0 46 0 0 3 6 1 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCGT.... 27 0 8 14.38 115 56 58 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGC...... 25 0 8 14.25 114 35 77 0 1 0 0 0 0 0 1
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCG..... 26 0 8 8.88 71 19 52 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAG....... 24 0 9 6.78 61 34 27 0 0 0 0 0 0 0 0
............................GAAGCGTCTGATGTCACAC............................................................................................................................................................................................................ 19 3 17 5.94 101 97 0 2 0 0 1 0 1 0 0
............................GAAGCGCCAGATGTCACACT........................................................................................................................................................................................................... 20 3 20 3.15 63 57 0 6 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCA........ 23 0 9 2.11 19 10 9 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCTTTCTCCAACCAACACAATAAATT........................................................... 27 0 7 2.00 14 11 1 0 2 0 0 0 0 0 0
.............................AAGCGTCTGATGTCACACT........................................................................................................................................................................................................... 19 3 20 1.95 39 35 0 1 0 0 0 3 0 0 0
..............................AGCGCCAGATGTCACACT........................................................................................................................................................................................................... 18 2 18 1.61 29 28 0 0 1 0 0 0 0 0 0
....................................................................................................TGACTTAGTATCGGGTATAACTGTAGAG........................................................................................................................... 28 0 20 1.40 28 27 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGC......... 22 0 9 1.33 12 7 5 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCTTTCTCCAACCAACACAATAAAT............................................................ 26 0 7 1.29 9 5 4 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAGCGT.... 26 0 8 1.25 10 10 0 0 0 0 0 0 0 0 0
.....................................................................................................GACTTAGTATCGGGTATAACTGTAGAGT.......................................................................................................................... 28 0 20 1.25 25 0 0 0 25 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACG.......... 21 0 9 1.00 9 8 1 0 0 0 0 0 0 0 0
.............................AAGCGCCAGATGTCACACT........................................................................................................................................................................................................... 19 3 20 1.00 20 20 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAGC...... 23 0 8 1.00 8 0 8 0 0 0 0 0 0 0 0
..............................AGCGTCTGATGTCACACT........................................................................................................................................................................................................... 18 2 4 1.00 4 3 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGCG..... 23 0 8 0.88 7 0 7 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAGCG..... 24 0 8 0.75 6 0 6 0 0 0 0 0 0 0 0
...........................................................................................................................TGGAGTTGCGGTGTCCGCAGT........................................................................................................... 21 1 12 0.75 9 6 0 3 0 0 0 0 0 0 0
....................................................................................................TGACTTAGTATCGGGTATAACTG................................................................................................................................ 23 0 20 0.75 15 0 0 0 0 15 0 0 0 0 0
...............................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAG....... 21 0 9 0.67 6 0 6 0 0 0 0 0 0 0 0
...................................................................................................................TATAACTGTAGAGTTGCGGTG................................................................................................................... 21 0 20 0.65 13 12 0 1 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCC......................................................................................... 22 0 11 0.64 7 1 0 0 6 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCCT........................................................................................ 23 0 11 0.64 7 2 0 0 3 2 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCCTC....................................................................................... 24 0 11 0.64 7 3 0 0 4 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAGCGT.... 25 0 8 0.63 5 1 4 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTCACTTGCACGGCTATCGAGGTA..................... 24 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCC........................................................................................... 20 0 11 0.55 6 1 0 0 5 0 0 0 0 0 0
....................................................................................................................................................................................................................................TATGACTGTGACGCAGCGT.... 19 0 8 0.50 4 0 4 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAA....... 24 1 9 0.44 4 4 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAGAGTTGCGGTGTCCGCAGT........................................................................................................... 21 0 9 0.44 4 4 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGAC........... 20 0 9 0.44 4 3 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTA..................... 23 0 7 0.43 3 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCCTCG...................................................................................... 25 0 10 0.40 4 2 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGCGTTAA. 27 0 8 0.38 3 0 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTATGACTGTGACGCAGCGTTAA. 23 0 8 0.38 3 0 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TATGACTGTGACGCAGCGTTAAT 23 0 8 0.38 3 1 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCGTT... 28 0 8 0.38 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGCGT.... 24 0 8 0.38 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAACTCACAACGTTCCCCCTCGTT.................................................................................... 24 0 12 0.33 4 4 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCACGGCTATCGAGGTATGACTGTGA............ 26 0 6 0.33 2 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCAG....... 25 0 9 0.33 3 0 3 0 0 0 0 0 0 0 0
............................GGAGCGTCTGATGTCACACT........................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACTTGCACGGCTATCGAGGTATGACTG............... 27 0 6 0.33 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAG....... 23 0 9 0.33 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAG....... 22 0 9 0.33 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAACTCACAACGTTCCCCCTCGT..................................................................................... 23 0 12 0.33 4 3 0 0 1 0 0 0 0 0 0
..............................................................................................................TCGGGTATAACTGTAGAGTTGCGG..................................................................................................................... 24 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCACTTGCACGGCTATCGAGT....................... 21 1 7 0.29 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCACTTGCACGGCTATCGAGG....................... 21 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TCTTTCTCCAACCAACACAATAAATT........................................................... 26 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCTTTCTCCAACCAACACAATAAA............................................................. 25 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCC............................................................................................ 19 0 11 0.27 3 0 0 0 3 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGC...... 22 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0
...................................................................TCTCGCACGCACTCTTTGTC.................................................................................................................................................................... 20 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAGCG..... 25 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGTATGACTGTGACGCAGCGTTAA. 24 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCAGC...... 26 0 8 0.25 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGGGACGCAGC...... 25 1 8 0.25 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCGTCG...................................................................................... 25 1 12 0.25 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAACTCACAACGTTCCCCCTCG...................................................................................... 22 0 12 0.25 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TATGACTGTGACGCAGCGTTA.. 21 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAGC...... 24 0 8 0.25 2 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................GTAGAGTTGCGGTGTCCGCAGT........................................................................................................... 22 0 9 0.22 2 1 0 1 0 0 0 0 0 0 0
............................................................................................................................AGAGTTGCGGTGTCCGCAGT........................................................................................................... 20 0 9 0.22 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGC......... 21 0 9 0.22 2 0 0 0 0 2 0 0 0 0 0
........................................................................................................................................................................................................................CGGCTATCGAGGTATGACTGTGACGC......... 26 0 9 0.22 2 0 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCA........ 24 0 9 0.22 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGT......... 22 1 9 0.22 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCA........ 21 0 9 0.22 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGA............ 19 0 9 0.22 2 2 0 0 0 0 0 0 0 0 0
..................CAGTGGCTACGCAGCGCCTGA.................................................................................................................................................................................................................... 21 0 10 0.20 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................ATCGGGTATAACTGTAGAGT.......................................................................................................................... 20 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTATGAC................. 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GAACTTTCACTTGCACGGCTATCGAGG....................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTCACTTGCACGGCTATCGAGGT...................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTCACTTGCACGGCTATCGAGGTA..................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCCTCGT..................................................................................... 26 0 10 0.20 2 0 0 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................ACTTTCACTTGCACGGCTATCGAGGTA..................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCC.......................................................................................... 21 0 11 0.18 2 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACGGCTATCGAGGGATGACTGTGA............ 24 1 11 0.18 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTATG................... 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTGCACGGCTATCGAGGTATGACTG............... 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................GGAGTTGCGGTGTCCGCAGT........................................................................................................... 20 1 12 0.17 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTATGAA................. 27 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCACGGCTATCGAGGTATGACTG............... 24 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACTTGCACGGCTATCGAGGTATGACT................ 26 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTGCACGGCTATCGAGGTATGA.................. 22 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGCTTTCTCCAACCAACACAATA............................................................... 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................ACTTTCTCCAACCAACACAATAAA............................................................. 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTTCTCCAACCAACACAATAAAT............................................................ 23 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCCTCGC..................................................................................... 26 1 14 0.14 2 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................................................CACTTGCACGGCTATCGAGGTATGA.................. 25 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTCCGCAGTAACTCACAACGTTCCCCCTC....................................................................................... 29 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGTCGAGGTATGACTGTGACGCAGCGT.... 27 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0
........................................................TTTTATGTCTCTCTCGCACG............................................................................................................................................................................... 20 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCA..... 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGTATGACTGTGACGCAGCCTTA.. 23 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCGTTCTCCAACCAACACAATAAAT............................................................ 26 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCGTTCTCCAACCAACACAATAAATT........................................................... 27 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCCGCGT.... 27 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCTTTCTCCAACCAACACAAT................................................................ 22 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTTGCACGGCTATCGAGGTA..................... 20 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCAGCGT.... 28 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGAGGTATGACTGGGACGCAGCG..... 24 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TGTAGAGTTGCGGTGTCCGCAGT........................................................................................................... 23 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAGGTATGACTGTGACGCAGCG..... 22 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGACTGCGACGCAGCGTTAAA 21 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTATCGAGGTATGACTGTGAAGCAGC...... 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TATGACTGTGACGCAGCG..... 18 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGATATGACTGTGACGCAGC...... 25 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CTATCGAGGTATGACTGGGACGCAGC...... 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGCTATCGAGGTATGACTGTGACGCA........ 26 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGAGGTATGACTGTGACGCA........ 20 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGT...... 25 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAGGTATGACTGTGACGC......... 18 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGTATGACCGTGAC........... 20 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGCTATCGAGGTATGACTGTGAC........... 23 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGCTATCGAGGTATGACTGTGACGC......... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACG.......... 22 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAA....... 21 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................TATCGGGTATAACTGTAGAGTTGC....................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................TGACTTAGTATCGGGTATAACTGTAG............................................................................................................................. 26 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...............TTTCAGTGGCTACGCAGCGCC....................................................................................................................................................................................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...................................................................................................CTGACTTAGTATCGGGTATAACTGT............................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................CGGGTATAACTGTAGAGTT......................................................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0
..............................................................................................ACATACTGACTTAGTATCGGGT....................................................................................................................................... 22 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATCGAGGAATGACTGTGACGCAGCA..... 26 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................ACGGCTATCGAGGGATGACTGTGAC........... 25 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................AGTAACTCACAACGTTCCCCCTC....................................................................................... 23 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAGAGTTGCGGTGTCCGCAGTT.......................................................................................................... 22 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CACTAACTCACAACGTTCCCCCTCGT..................................................................................... 26 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................GTGGAGTTGCGGTGTCCGCAGT........................................................................................................... 22 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTGTAACTCACAACGTTCCCCCTCGTT.................................................................................... 27 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................GAGTTGCGGTGTCCGCATT........................................................................................................... 19 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CACTAACTCACAACGTTCCCCCTC....................................................................................... 24 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................CAGTTACTCACAACGTTCCCCC......................................................................................... 22 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCGTC....................................................................................... 24 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TAACTCACAACGTTCCCCCTC....................................................................................... 21 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CACTAACTCACAACGTTCCCCCT........................................................................................ 23 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................CTGTAACTCACAACGTTCCCCCTCGT..................................................................................... 26 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................AGTAACTCACAACGTTCCCCGTC....................................................................................... 23 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGGAGTTGCGGTGTCCGCAGTT.......................................................................................................... 22 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................CACTAACTCACAACGTTCCCC.......................................................................................... 21 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................AATAAATTCAGTTTCAGGATT.............................................. 21 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0
...........................................................TATGTCTCTCTCGCTCGCAC............................................................................................................................................................................ 20 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAACTCACAACGTTCCCCCTCGTA.................................................................................... 24 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.....................TGGCTACGCAGCGCCTGACGT................................................................................................................................................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
.....................TGGCTACGCAGCGCCTGACGTCA............................................................................................................................................................................................................... 23 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAACTCACAACGTTCCCCCTCGC..................................................................................... 23 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0
.........................TACGCAGCGCCTGACGTCAC.............................................................................................................................................................................................................. 20 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
.....................TGGCTACGCAGCGCCTGACGTCAC.............................................................................................................................................................................................................. 24 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
........................CTACGCAGCGCCTGACGTCAC.............................................................................................................................................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCCCC....................................................................................... 24 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................CGAAGCGCCAGATGTCACACT........................................................................................................................................................................................................... 21 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAGAGTTGCGGTGACCGCAGT........................................................................................................... 21 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCACAACGTTCCCCCTCGTCCTT................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............TGTTCAGTGGCTACGCAGCGCC....................................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................ATATCGGGTATAACTGTAGAGT.......................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.................TCAGTGGCTACGCAGCGCC....................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................TGACTTAGTATCGGGTATAACTGTAGAA........................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................GTTCGTACTGACTGAGTATCGGG........................................................................................................................................ 23 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................AACTGTAGAGTTGCGGTGTCT................................................................................................................ 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................ATAACTGTAGAGTTGCGGTGTC................................................................................................................. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................GACTGTAGAGTTGCGGTGTCC................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............TTTCAGTGGCTACGCAGCGC........................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................................................................................ATACTGACTTAGTATCGGGTAA..................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................GACTTAGTATCGGGTATAACGGTA.............................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................AGTGGCTACGCAGCGCCTT..................................................................................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................CTTCATGTCTCTCTCGCACGCAGTCTTTG...................................................................................................................................................................... 29 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................GTATCGGGTATAACTGTAGAG........................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTTCCCCTCG...................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACTGGAGTTGCGGTGTCCGCAGT........................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTGTAGAGTTGCGGTG................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTCCCCCC........................................................................................ 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................CAGTAACTCACAACGTTTCCCC......................................................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTCCTTGTTTAATTAAAAGTCACCGATGCGTCGCGGACTGCAGTGTGAGTCTGACTAAAATACAGAGAGAGCGTGCGTGAGAAACAGCACAGCATGTATGACTGAATCATAGCCCATATTGACATCTCAACGCCACAGGCGTCATTGAGTGTTGCAAGGGGGAGCAAGAAAGAGGTTGGTTGTGTTATTTAAGTCAAAATCCTTGAAAGTGAACGTGCCGATAGCTCCATACTGACACTGCGTCGCAATTA
***********************************************************............(((...((((((.(((((((((...)))))...)))))))..))).)))...............................**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 GSM444067
head
 SRR902010
ovaries
 V112
male body		 M059
embryo
 GSM343916
embryo
......................................................................................................................................................................................................................GTGCCGATAGCTCCATACTGACAC............. 24 0 9 2.00 18 18 0 0 0 0 0 0
..................................GGACTGCAGTGTGAGTCTGACTA.................................................................................................................................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................................................TGCCGATAGCTCCATACTGACAC............. 23 0 9 1.44 13 13 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGTGCCGATAGCTCCATACTGACAC............. 25 0 6 1.00 6 5 0 0 0 0 1 0
...........................TCGTCGCGGACTACAGTATGAGT......................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................CATCTCAACGCCACAGGCGTC............................................................................................................ 21 0 20 0.80 16 16 0 0 0 0 0 0
..............................................................CAGAGAGAGCGTGCGTGAG.......................................................................................................................................................................... 19 0 20 0.75 15 15 0 0 0 0 0 0
...........................................................................................................................................................................................................TGAAAGTGAACGTGCCGATAGCTCCAT..................... 27 0 5 0.60 3 3 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCGATAGCTCCATACTGACAC............. 22 0 9 0.56 5 5 0 0 0 0 0 0
...................................................................................ACAGCACAGCATGTATGACTGAATCAT............................................................................................................................................. 27 0 4 0.50 2 0 2 0 0 0 0 0
............................................................................................................................................................................................................GAAAGTGAACGTGCCGATAGCTCCAT..................... 26 0 5 0.40 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAGTGAACGTGCCGATAGCTCCAT..................... 25 0 5 0.40 2 0 0 0 2 0 0 0
.....................................................................................................................................................................................................................CGTGCCGATAGCTCCATACTGACA.............. 24 0 6 0.33 2 2 0 0 0 0 0 0
...............................CGCGGAATGCACTGTGAGTAT....................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................GAACGTGCCGATAGCTCCATACT.................. 23 0 7 0.29 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................................AACGTGCCGATAGCTCCAT..................... 19 0 8 0.25 2 2 0 0 0 0 0 0
...................................................................AGAGCGTGCGTGAGAAACAGCACAGC.............................................................................................................................................................. 26 0 20 0.25 5 5 0 0 0 0 0 0
..................................................................................AACAGCACAGCATGTATGACTGAATCAT............................................................................................................................................. 28 0 4 0.25 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GCCGATAGCTCCATACTGACACTG........... 24 0 9 0.22 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................GTGCCGATAGCTCCATACTGACA.............. 23 0 9 0.22 2 2 0 0 0 0 0 0
................................................................................................TATGACTGAATCATAGCCCAT...................................................................................................................................... 21 0 20 0.20 4 4 0 0 0 0 0 0
......................................................................GCGTGCGTGAGAAACAGCAC................................................................................................................................................................. 20 0 20 0.20 4 4 0 0 0 0 0 0
............................................................................................................................................................................................................GAAAGTGAACGTGCCGATAGCTCCA...................... 25 0 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................CCTTGAAAGTGAACGTGCCGA.............................. 21 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GAACGTGCCGATAGCTCCATACTGACAC............. 28 0 6 0.17 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGTGCCGATAGCTCCATACTGACAC............. 26 0 6 0.17 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................AGTGAACGTGCCGATAGCTCCATACT.................. 26 0 6 0.17 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GAACGTGCCGATAGCTCCATACTGA................ 25 0 6 0.17 1 1 0 0 0 0 0 0
.................................................................AGAGAGCGTGCGTGAGAA........................................................................................................................................................................ 18 0 20 0.15 3 3 0 0 0 0 0 0
................................................................GAGAGAGCGTGCGTGAGAAACAG.................................................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0 0
................................................................GAGAGAGCGTGCGTGAGA......................................................................................................................................................................... 18 0 20 0.15 3 3 0 0 0 0 0 0
......................................................CTAAAATACAGAGAGAGCGT................................................................................................................................................................................. 20 0 7 0.14 1 0 0 0 0 1 0 0
.......................................................................................................................................................................GAAAGAGGTTGGTTGTGTTATTT............................................................. 23 0 7 0.14 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................GTGAACGTGCCGATAGCTCCATACT.................. 25 0 7 0.14 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................AGTGAACGTGCCGATAGCTCCA...................... 22 0 7 0.14 1 1 0 0 0 0 0 0
......................................................................................................................................................................AGAAAGAGGTTGGTTGTGTTATT.............................................................. 23 0 7 0.14 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................AGTGAACGTGCCGATAGCTCCAT..................... 23 0 7 0.14 1 1 0 0 0 0 0 0
..............................................................................................................................TCAACGCCACAGGCGTCATTGAGT..................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0
.................................................................................................................................ACGCCACAGGCGTCATTGAGT..................................................................................................... 21 0 8 0.13 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................GTGAACGTGCCGATAGCTCCAT..................... 22 0 8 0.13 1 1 0 0 0 0 0 0
.......................................................................................................................................................................GAAAGAGGTTGGTTGTGTTA................................................................ 20 0 8 0.13 1 0 0 0 1 0 0 0
...............................................................................................................................CAACGCCACAGGCGTCATTGAGT..................................................................................................... 23 0 8 0.13 1 1 0 0 0 0 0 0
............................................................TACAGAGAGAGCGTGCGTGAGA......................................................................................................................................................................... 22 0 8 0.13 1 1 0 0 0 0 0 0
..........................................................................................................................................GCGTCATTGAGTGTTGCAA.............................................................................................. 19 0 8 0.13 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................GAACGTGCCGATAGCTCCA...................... 19 0 8 0.13 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCGATAGCTCCATACTGACAC............. 21 0 9 0.11 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGCCGATAGCTCCATACTGACACT............ 24 0 9 0.11 1 1 0 0 0 0 0 0
................................................................................................................................AACGCCACAGGAGTCATTGAGT..................................................................................................... 22 1 9 0.11 1 0 0 0 0 0 0 1
........................................................................................................................................................................................................................GCCGATAGCTCCATACTGACA.............. 21 0 9 0.11 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................ATAGCTCCATACTGACAC............. 18 0 9 0.11 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGCCTATAGCTCCATACTGACA.............. 22 1 9 0.11 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGCCGATAGCTCCATACTGACA.............. 22 0 9 0.11 1 1 0 0 0 0 0 0
................................................................GAGAGAGCGTGCGTGAGAAACAGCA.................................................................................................................................................................. 25 0 20 0.10 2 0 2 0 0 0 0 0
......................................................................GCGTGCGTGAGAAACAGCA.................................................................................................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0
...........................................................................CGTGAGAAACAGCACAGC.............................................................................................................................................................. 18 0 20 0.10 2 2 0 0 0 0 0 0
.............................................................................................................TAGCCCATATTGACATCTCAA......................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0
...................................................................................................................................GCCACAGGCGTTATTGAGTGTT.................................................................................................. 22 1 13 0.08 1 1 0 0 0 0 0 0
................................................................................................................................................CTGAGTGTTGCAAGGGGGAGCAAGAAA................................................................................ 27 1 14 0.07 1 0 0 0 0 1 0 0
......................CCGATGCGTCGCGGACTGCA................................................................................................................................................................................................................. 20 0 17 0.06 1 1 0 0 0 0 0 0
...................................................................................................................................................AGTGTTGCAAGGGGGAGCAAGAA................................................................................. 23 0 19 0.05 1 1 0 0 0 0 0 0
..............................................................................................TGTATGACTGAATCATAGCCTA....................................................................................................................................... 22 1 19 0.05 1 1 0 0 0 0 0 0
.................TGTCACCGATGCGTCGCGGA...................................................................................................................................................................................................................... 20 1 19 0.05 1 1 0 0 0 0 0 0
.............................................................ACAGAGAGAGCGTGCGTGAGA......................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................GACGCCACAGGCGTCCTTGAGT..................................................................................................... 22 2 20 0.05 1 0 0 0 0 0 0 1
......................................................................................................................................................GTTGCAAGGGGGAGCAAGAA................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................TGTTGCAAGGGGGAGCAAGA.................................................................................. 20 0 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................................CATAGCCCATATTGACATCTC........................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0
...................................................................................................GACTGAATCATAGCCCATATTGACAT.............................................................................................................................. 26 0 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................CAACGCCATAGGCGTCATTGAGTGTT.................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................TGTTGCAAGGGGGAGCAA.................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................CAACGCCATAGGCGTCATTGA....................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................TCTCAACGCCATAGGCGTCAT.......................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0
......................................................................GCGTGCGTGAGAAACAGCACA................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 1 0 0
.............................................................ACAGAGAGAGCGTGCGTGA........................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_2748:23006-23256 - dps_2335 AAGGAACAAATTAATTTTCAGTGGCTACGCAGCGCCTGACGTCACACTCAGA-----CT----------------GA----TTTTATGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTAC------------------------------ATACTGACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGTAACTCACAACGTTCCCCCTCGTTCTTTCTCCAACCAACACAATAAATT--------CAGTTTTAGGAACT-------------------------------------------TTCACTTGCACGGCTATCGAGGTATGACTGTGACGCAGCGTTAAT
droPer2 scaffold_55:31530-31814 + AAGGAACAAATCAATTTGCAGTGGCTACGCAGCGCCCGACGTCACGCTCAGA-----CT----------------GA----TTTTCTGTCTCTCTCACACGCACTCTTTGTCGTGTCGTTTAATATTAGCGGCGTCAGCCGGAGGAGAGCCATACTGACTAAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACTCACAACGTTCCCCCTCGTT-------------------------------------------TGATTTGTGTTGTTTGGTACTAGGATTGAGTTTTTCTTTCTCCAACTTTCACTTTAACGGCTATCGAGGCAGGACTGTAAC----TGTTAAT
droWil2 scf2_1100000004943:7304372-7304457 + CGCAAT-----------------------------------------TTT--------------------------------------------------------------------------------------------------------------------------------------------------------TTACAACAATCCACCATACTTTTACTCCACGAAACACAACAAATTTGAAATTACAATTTCAAAAAAT-------------------------------------------ATGAC--------CTC---------------------------CA
droVir3 scaffold_12822:572471-572556 - AAGGACCAATTTCAATTTCAGCGGCTTTCCAATAGCCAACCAAATATTTTGG-----CT----------------AA----TTATCTCTCTCCCTCTCCCTCTCTCTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droMoj3 scaffold_6540:24255944-24255999 - TCTCAC-----------------------------------------TCACA-----CT----------------CA----CTATCTCTCTCTCTCTTTCGCACTCTCTTGAGTGTTGCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droGri2 scaffold_15110:7811776-7811826 + CTCTCT-------------------------------------------------------------------------------------CTTTCTCTCGCACTCCAG---------------------------------------------C----------------------------------------------------------------------------------TCACTAAATT--------CAAATTTAGGAAAT--------------------------------------------------------------------------------------TT
droAna3 scaffold_13337:21600595-21600605 + GATAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droBip1 scf7180000394975:13532-13587 - TAGCC---------------------ACGAAATGGATGACGGAACACAGAAA-----CC----------------GA----TTGCGTTTTACTCTCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------GC
droKik1 scf7180000301865:413-486 + CTGTGC------------------------GGCGTTTG----CAAAATCAGA-----CT----------------GA----TTTTTCCCCTCTCTTCCATTCTCTTCTTCCCGCATCGTAT------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC---------------------------TG
droFic1 scf7180000453796:216533-216554 + TAGGAAGAACTTAATGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT
droEle1 scf7180000490670:6408-6464 + TCGCGT-----------------------------------------TTTAA-----TT----------------AA----CTTTATGTTTTCACCGCACGAACTCTTTATAAGTTTGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------AT
droRho1 scf7180000779391:53436-53562 - TTCTAT---------------------------------------------------------------------------------CTCCATCTCCCTCGCACTCCCT---------------------------------------------TTACCTGAGTAACGGGTATCT---GATAGTCGGGGCACCCG------ACTATAACGTTCTCTCTTGTTTTTTCTTCAAATCACAAGGAAAACT--------TATATTTGT-A-----------------------------------------------------------CAC---------------------------TT
droTak1 scf7180000415660:5666-5723 + TTTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATCGGCCCCAACAGCTC--------CAAATTTCGAAATT-------------------------------------------TTCACTTTCACCGCTC---------------------------TC
droEug1 scf7180000408923:17450-17488 + AATGCG--AATTGATTTTCAA--GCCACG----------------------------CCCACTCTAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC
dm3 chr3L:17691482-17691490 - AGCTTT--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droSim2 2r:2057719-2057729 - TAGAATCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droYak3 v2_chrUn_293:54214-54342 + AAAACT-----------------------------------------TTTGGCCACGCCCACTCTAACGCCCACAAACCGCCAAAA----ACTGTCCTTCGCACTCACA---------------------------------------------CTAGCTGAGTAACGGGTATCA---GATAGTCGGGGAACTCG------ACTATAGCGTTCTCTCTTGTTTTT------------------------------------------------------------------------------------------------------C---------------------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAGGAACAAATTAATTTTCAGTGGCTACGCAGCGCCTGACGTCACACTCAGA-----CT----------------GA----TTTTATGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTAC------------------------------ATACTGACTTAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGTAACTCACAACGTTCCCCCTCGTTCTTTCTCCAACCAACACAATAAATT--------CAGTTTTAGGAACT-------------------------------------------TTCACTTGCACGGCTATCGAGGTATGACTGTGACGCAGCGTTAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCGT....27814.38115056100005800
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGC......25814.25114035101007700
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCG.....2688.8871019000005200
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAG.......2496.7861034000002700
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCA........2392.111901000000900
............................................................................................................................................................................................................................TTCTTTCTCCAACCAACACAATAAATT--------......................................................................................................2772.001401120000100
...........................................................................................................................................................TGACTTAGTATCGGGTATAACTGTAGAG..............................................................................................................................................................................28201.402802700001000
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGC.........2291.33120700000500
............................................................................................................................................................................................................................TTCTTTCTCCAACCAACACAATAAAT...............................................................................................................2671.2990500000400
.......................................................................................................................................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAGCGT....2681.251001000000000
............................................................................................................................................................GACTTAGTATCGGGTATAACTGTAGAGT.............................................................................................................................................................................28201.252500250000000
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACG..........2191.0090800000100
........................................................................................................................................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAGC......2381.0080000000800
.........................................................................................................................................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGCG.....2380.8870000000700
........................................................................................................................................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAGCG.....2480.7560000000600
...........................................................................................................................................................TGACTTAGTATCGGGTATAACTG...................................................................................................................................................................................23200.751500000000150
.........................................................................................................................................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAG.......2190.6760000000600
..........................................................................................................................................................................TATAACTGTAGAGTTGCGGTG......................................................................................................................................................................21200.651301200001000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCCC............................................................................................................................................22110.6470160000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCCCT...........................................................................................................................................23110.6470230000020
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCCCTC..........................................................................................................................................24110.6470340000000
........................................................................................................................................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAGCGT....2580.6350100000400
........................................................................................................................................................................................................................................................................................................................TTCACTTGCACGGCTATCGAGGTA.....................2450.6030300000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCC..............................................................................................................................................20110.5560150000000
..............................................................................................................................................................................................................................................................................................................................................TATGACTGTGACGCAGCGT....1980.5040000000400
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAA.......2490.4440400000000
..................................................................................................................................................................................TAGAGTTGCGGTGTCCGCAGT..............................................................................................................................................................2190.4440400000000
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGAC...........2090.4440300000100
.........................................................................................................................................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTA.....................2370.4330300000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCCCTCG.........................................................................................................................................25100.4040220000000
.........................................................................................................................................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGCGTTAA.2780.3830000000300
.............................................................................................................................................................................................................................................................................................................................................GTATGACTGTGACGCAGCGTTAA.2380.3830000000300
..............................................................................................................................................................................................................................................................................................................................................TATGACTGTGACGCAGCGTTAAT2380.3830100000200
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCGTT...2880.3830300000000
.........................................................................................................................................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGCGT....2480.3830300000000
......................................................................................................................................................................................................TAACTCACAACGTTCCCCCTCGTT.......................................................................................................................................24120.3340400000000
...............................................................................................................................................................................................................................................................................................................................GCACGGCTATCGAGGTATGACTGTGA............2660.3320000000200
.....................................................................................................................................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCAG.......2590.3330000000300
...........................................................................................................................................................................................................................................................................................................................ACTTGCACGGCTATCGAGGTATGACTG...............2760.3320000000200
.......................................................................................................................................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAG.......2390.3330300000000
........................................................................................................................................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCAG.......2290.3330300000000
......................................................................................................................................................................................................TAACTCACAACGTTCCCCCTCGT........................................................................................................................................23120.3340310000000
.....................................................................................................................................................................TCGGGTATAACTGTAGAGTTGCGG........................................................................................................................................................................24200.3060600000000
.........................................................................................................................................................................................................................................................................................................................TCACTTGCACGGCTATCGAGT.......................2170.2920200000000
.........................................................................................................................................................................................................................................................................................................................TCACTTGCACGGCTATCGAGG.......................2170.2920200000000
.............................................................................................................................................................................................................................TCTTTCTCCAACCAACACAATAAATT--------......................................................................................................2670.2920200000000
............................................................................................................................................................................................................................TTCTTTCTCCAACCAACACAATAAA................................................................................................................2570.2920200000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCC...............................................................................................................................................19110.2730030000000
.........................................................................................................................................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAGC......2280.2520000000200
............................................................................................TCTCGCACGCACTCTTTGTC.....................................................................................................................................................................................................................................................20200.2550500000000
.......................................................................................................................................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAGCG.....2580.2520000000200
............................................................................................................................................................................................................................................................................................................................................GGTATGACTGTGACGCAGCGTTAA.2480.2520000000200
.....................................................................................................................................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCAGC......2680.2520200000000
......................................................................................................................................................................................................TAACTCACAACGTTCCCCCTCG.........................................................................................................................................22120.2530300000000
..............................................................................................................................................................................................................................................................................................................................................TATGACTGTGACGCAGCGTTA..2180.2520000000200
.......................................................................................................................................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGCAGC......2480.2520100000100
.................................................................................................................................................................................GTAGAGTTGCGGTGTCCGCAGT..............................................................................................................................................................2290.2220100001000
...................................................................................................................................................................................AGAGTTGCGGTGTCCGCAGT..............................................................................................................................................................2090.2220200000000
.......................................................................................................................................................................................................................................................................................................................................ATCGAGGTATGACTGTGACGC.........2190.2220000000020
..................................................................................................................................................................................................................................................................................................................................CGGCTATCGAGGTATGACTGTGACGC.........2690.2220000000110
.....................................................................................................................................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCA........2490.2220200000000
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGT.........2290.2220200000000
........................................................................................................................................................................................................................................................................................................................................TCGAGGTATGACTGTGACGCA........2190.2220000000200
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGA............1990.2220200000000
..................CAGTGGCTACGCAGCGCCTGA..............................................................................................................................................................................................................................................................................................................................21100.2020200000000
....................................................................................................................................................................ATCGGGTATAACTGTAGAGT.............................................................................................................................................................................20200.2040400000000
.........................................................................................................................................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTATGAC.................2750.2010100000000
........................................................................................................................................................................................................................................................................GAACT-------------------------------------------TTCACTTGCACGGCTATCGAGG.......................2750.2010100000000
............................................................................................................................................................................................................................................................................T-------------------------------------------TTCACTTGCACGGCTATCGAGGT......................2450.2010100000000
............................................................................................................................................................................................................................................................................T-------------------------------------------TTCACTTGCACGGCTATCGAGGTA.....................2550.2010100000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCCCTCGT........................................................................................................................................26100.2020010001000
..........................................................................................................................................................................................................................................................................ACT-------------------------------------------TTCACTTGCACGGCTATCGAGGTA.....................2750.2010100000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCC.............................................................................................................................................21110.1820020000000
.........................................................................................................................................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTATG...................2560.1710100000000
.............................................................................................................................................................................................................................................................................................................................TTGCACGGCTATCGAGGTATGACTG...............2560.1710100000000
.........................................................................................................................................................................................................................................................................................................................TCACTTGCACGGCTATCGAGGTATGAA.................2760.1710100000000
..............................................................................................................................................................................................................................................................................................................................TGCACGGCTATCGAGGTATGACTG...............2460.1710100000000
...........................................................................................................................................................................................................................................................................................................................ACTTGCACGGCTATCGAGGTATGACT................2660.1710100000000
.............................................................................................................................................................................................................................................................................................................................TTGCACGGCTATCGAGGTATGA..................2270.1410100000000
...............................................................................................................................................................................................................................TTTCTCCAACCAACACAATAAAT...............................................................................................................2370.1410010000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCCCTCGC........................................................................................................................................26140.1420020000000
..........................................................................................................................................................................................................................................................................................................................CACTTGCACGGCTATCGAGGTATGA..................2570.1410100000000
..............................................................................................................................................................................................GTCCGCAGTAACTCACAACGTTCCCCCTC..........................................................................................................................................2980.1310100000000
.................................................................................TTTTATGTCTCTCTCGCACG................................................................................................................................................................................................................................................................2080.1310000000010
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGCA.....2680.1310000000100
............................................................................................................................................................................................................................TTCTTTCTCCAACCAACACAAT...................................................................................................................2280.1310100000000
............................................................................................................................................................................................................................................................................................................................CTTGCACGGCTATCGAGGTA.....................2080.1310100000000
.....................................................................................................................................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACGCAGCGT....2880.1310010000000
................................................................................................................................................................................TGTAGAGTTGCGGTGTCCGCAGT..............................................................................................................................................................2380.1310100000000
..........................................................................................................................................................................................................................................................................................................................................GAGGTATGACTGTGACGCAGCG.....2280.1310100000000
..............................................................................................................................................................................................................................................................................................................................................TATGACTGTGACGCAGCG.....1880.1310000000100
...................................................................................................................................................................................................................................................................................................................................GGCTATCGAGGTATGACTGTGACGCA........2690.1110100000000
.........................................................................................................................................................................................................................................................................................................................................CGAGGTATGACTGTGACGCA........2090.1110000000100
......................................................................................................................................................................................................................................................................................................................................TATCGAGGTATGACTGTGACGCAGT......2590.1110100000000
..........................................................................................................................................................................................................................................................................................................................................GAGGTATGACTGTGACGC.........1890.1110000000100
...................................................................................................................................................................................................................................................................................................................................GGCTATCGAGGTATGACTGTGAC...........2390.1110100000000
...................................................................................................................................................................................................................................................................................................................................GGCTATCGAGGTATGACTGTGACGC.........2590.1110100000000
.....................................................................................................................................................................................................................................................................................................................................CTATCGAGGTATGACTGTGACG..........2290.1110100000000
.........................................................................................................................................................................................................................................................................................................................................CGAGGTATGACTGTGACGCAA.......2190.1110100000000
...................................................................................................................................................................TATCGGGTATAACTGTAGAGTTGC..........................................................................................................................................................................24200.1020200000000
...........................................................................................................................................................TGACTTAGTATCGGGTATAACTGTAG................................................................................................................................................................................26200.1020000002000
...............TTTCAGTGGCTACGCAGCGCC.................................................................................................................................................................................................................................................................................................................................21200.1020000002000
..........................................................................................................................................................CTGACTTAGTATCGGGTATAACTGT..................................................................................................................................................................................25200.1020000000200
......................................................................................................................................................................CGGGTATAACTGTAGAGTT............................................................................................................................................................................19200.1020000000002
.......................................................................................................................AC------------------------------ATACTGACTTAGTATCGGGT..........................................................................................................................................................................................22100.1010100000000
....................................................................................................................................................................................................AGTAACTCACAACGTTCCCCCTC..........................................................................................................................................23110.0910100000000
..................................................................................................................................................................................TAGAGTTGCGGTGTCCGCAGTT.............................................................................................................................................................22110.0910100000000
......................................................................................................................................................................................................TAACTCACAACGTTCCCCCTC..........................................................................................................................................21130.0810100000000
......................................................................................................................................................................................................TAACTCACAACGTTCCCCCTCGTA.......................................................................................................................................24160.0610100000000
.....................TGGCTACGCAGCGCCTGACGT...........................................................................................................................................................................................................................................................................................................................21170.0610100000000
.....................TGGCTACGCAGCGCCTGACGTCA.........................................................................................................................................................................................................................................................................................................................23170.0610100000000
......................................................................................................................................................................................................TAACTCACAACGTTCCCCCTCGC........................................................................................................................................23170.0610010000000
.........................TACGCAGCGCCTGACGTCAC........................................................................................................................................................................................................................................................................................................................20170.0610100000000
.....................TGGCTACGCAGCGCCTGACGTCAC........................................................................................................................................................................................................................................................................................................................24170.0610100000000
........................CTACGCAGCGCCTGACGTCAC........................................................................................................................................................................................................................................................................................................................21170.0610100000000
.................TCAGTGGCTACGCAGCGCC.................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...........................................................................................................................................................TGACTTAGTATCGGGTATAACTGTAGAA..............................................................................................................................................................................28200.0510000000100
.............................................................................................................................................................................AACTGTAGAGTTGCGGTGTCT...................................................................................................................................................................21200.0510000000010
...........................................................................................................................................................................ATAACTGTAGAGTTGCGGTGTC....................................................................................................................................................................22200.0510000000010
...............TTTCAGTGGCTACGCAGCGC..................................................................................................................................................................................................................................................................................................................................20200.0510000001000
.......................................................................................................................................................ATACTGACTTAGTATCGGGTAA........................................................................................................................................................................................22200.0510100000000
...................AGTGGCTACGCAGCGCCTT...............................................................................................................................................................................................................................................................................................................................19200.0510100000000
..................................................................................................................................................................GTATCGGGTATAACTGTAGAG..............................................................................................................................................................................21200.0510000000010
.............................................................................................................................................................................AACTGTAGAGTTGCGGTG......................................................................................................................................................................18200.0510100000000
...................................................................................................................................................................................................CAGTAACTCACAACGTTCCCCCC...........................................................................................................................................23200.0510010000000
droPer2
AAGGAACAAATCAATTTGCAGTGGCTACGCAGCGCCCGACGTCACGCTCAGA-----CT----------------GA----TTTTCTGTCTCTCTCACACGCACTCTTTGTCGTGTCGTTTAATATTAGCGGCGTCAGCCGGAGGAGAGCCATACTGACTAAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACTCACAACGTTCCCCCTCGTT-------------------------------------------TGATTTGTGTTGTTTGGTACTAGGATTGAGTTTTTCTTTCTCCAACTTTCACTTTAACGGCTATCGAGGCAGGACTGTAAC----TGTTAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................CAGCAACTCACAACGTTCCCCCTC..........................................................................................................................................242015.7031403140000
....AACAAATCAATTTGCAGTGG.............................................................................................................................................................................................................................................................................................................................................20200.204000004
......CAAATCAATTTGCAGTGGCTACGCAG.....................................................................................................................................................................................................................................................................................................................................26200.102020000
.....................................................................................................................................................................TCGGGTATAACTGTAGAGTTGCGGTG......................................................................................................................................................................26200.102020000
...............................................................................................................................................................TAAGTATCGGGTATAACTGTA.................................................................................................................................................................................21200.102000002
AAGGAACAAATCAATTTGCAGT...............................................................................................................................................................................................................................................................................................................................................22200.102020000
........................................................................................................................................AGCCGGAGGAGAGCCATAC..........................................................................................................................................................................................................19160.061000010
..........................................CACGCTCAGA-----CT----------------GA----TTTTCTG.............................................................................................................................................................................................................................................................................21200.051100000
............AATTTGCAGTGGCTACGCAGCG...................................................................................................................................................................................................................................................................................................................................22200.051010000
..................................................................................TTTCTGTCTCTCTCACACGCAC.............................................................................................................................................................................................................................................................22200.051010000
..................................................GA-----CT----------------GA----TTTTCTGTCTCTCTCACA..................................................................................................................................................................................................................................................................24200.051010000
.......................................................................................GTCTCTCTCACACGCACTCTTTG.......................................................................................................................................................................................................................................................23200.051010000
........................................................................................................................................................................................TGCGGTGTCCGCAGCAACTC.........................................................................................................................................................20200.051010000
............................................CGCTCAGA-----CT----------------GA----TTTTCTGTCTCTCT......................................................................................................................................................................................................................................................................26200.051010000
..................................................................................TTTCTGTCTCTCTCACACGCACT............................................................................................................................................................................................................................................................23200.051010000
droWil2
CGCAAT-----------------------------------------TTT--------------------------------------------------------------------------------------------------------------------------------------------------------TTACAACAATCCACCATACTTTTACTCCACGAAACACAACAAATTTGAAATTACAATTTCAAAAAAT-------------------------------------------ATGAC--------CTC---------------------------CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................TACTTTTACTCCACGAAACACAACAAAT...............................................................................................................2820.50101000
.............................................................................................................................................................................................................................TTTTACTCCACGAAACACAACAAATT..............................................................................................................2620.50101000
...........................................................................................................................................................................................................TACAACAATCCACCATACTTTTACTCC...............................................................................................................................2720.50101000
droVir3
AAGGACCAATTTCAATTTCAGCGGCTTTCCAATAGCCAACCAAATATTTTGG-----CT----------------AA----TTATCTCTCTCCCTCTCCCTCTCTCTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TCTCAC-----------------------------------------TCACA-----CT----------------CA----CTATCTCTCTCTCTCTTTCGCACTCTCTTGAGTGTTGCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTCTCT-------------------------------------------------------------------------------------CTTTCTCTCGCACTCCAG---------------------------------------------C----------------------------------------------------------------------------------TCACTAAATT--------CAAATTTAGGAAAT--------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GATAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAGCC---------------------ACGAAATGGATGACGGAACACAGAAA-----CC----------------GA----TTGCGTTTTACTCTCGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------GCSizeHit CountTotal NormTotal
No Reads
droKik1
CTGTGC------------------------GGCGTTTG----CAAAATCAGA-----CT----------------GA----TTTTTCCCCTCTCTTCCATTCTCTTCTTCCCGCATCGTAT------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC---------------------------TGSizeHit CountTotal NormTotal
No Reads
droFic1
TAGGAAGAACTTAATGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotal
No Reads
droEle1
TCGCGT-----------------------------------------TTTAA-----TT----------------AA----CTTTATGTTTTCACCGCACGAACTCTTTATAAGTTTGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------ATSizeHit CountTotal NormTotal
No Reads
droRho1
TTCTAT---------------------------------------------------------------------------------CTCCATCTCCCTCGCACTCCCT---------------------------------------------TTACCTGAGTAACGGGTATCT---GATAGTCGGGGCACCCG------ACTATAACGTTCTCTCTTGTTTTTTCTTCAAATCACAAGGAAAACT--------TATATTTGT-A-----------------------------------------------------------CAC---------------------------TTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATCGGCCCCAACAGCTC--------CAAATTTCGAAATT-------------------------------------------TTCACTTTCACCGCTC---------------------------TCSizeHit CountTotal NormTotal
No Reads
droEug1
AATGCG--AATTGATTTTCAA--GCCACG----------------------------CCCACTCTAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
dm3
AGCTTT--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
TAGAATCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droYak3
AAAACT-----------------------------------------TTTGGCCACGCCCACTCTAACGCCCACAAACCGCCAAAA----ACTGTCCTTCGCACTCACA---------------------------------------------CTAGCTGAGTAACGGGTATCA---GATAGTCGGGGAACTCG------ACTATAGCGTTCTCTCTTGTTTTT------------------------------------------------------------------------------------------------------C---------------------------TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................CG------ACTATAGCGTTCTCTCTTG.........................................................................................................................................21200.7014014000000000
.................................................TGGCCACGCCCACTCTAACGC...............................................................................................................................................................................................................................................................................................21200.25500500000000
..AACT-----------------------------------------TTTGGCCACGCCCACTCTAACGCC..............................................................................................................................................................................................................................................................................................28200.10200000000002
....................................................................................................................................................................AACGGGTATCA---GATAGTCGGGGA.......................................................................................................................................................................23200.05100000000001
...............................................................CTAACGCCCACAAACCGCCAAAA----AC.........................................................................................................................................................................................................................................................................25200.05100100000000
.........................................................................................................................................................................................GGGGAACTCG------ACTATAGCGTTC................................................................................................................................................22200.05110000000000
........................................................................................................................................................................................CGGGGAACTCG------ACTATAGCGTTCT...............................................................................................................................................24200.05100000010000
...................................................................CGCCCACAAACCGCCAAAA----ACTGTCCTT..................................................................................................................................................................................................................................................................28200.05101000000000
.................................................................AACGCCCACAAACCGCCAAAA----ACTGT......................................................................................................................................................................................................................................................................26200.05100100000000

Generated: 05/18/2015 at 04:12 AM