ID:

dps_2321

 Coordinate:

Unknown_singleton_245:7626-7776 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.6 -16.6

Flybase annnotation

exon [dpse_GLEANR_7261:3]; CDS [Dpse\GA28006-cds]; intron [Dpse\GA28006-in]

Repeatable elements

NameClassFamilyStrand
Gypsy24-I_Dpse-intLTRGypsy-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATGTAAAGGAAAAGGGGATAAATAGGAATGAAAATATTAGAAAACATGGAGTGGATTATGGAAATCGTAGAGCGTGGAAGGAAGAGTAACGTCGACTCAGCACCGCTGAAATTTTGTGCTTAAATCAGAAACTTTAAAGTGAGTACAGGAAAAAGGCGGACGAGCAAATAAATTGTAATGCAGGAAATTTTACTCACAGCCGGCAAGGGATTTAGCCACCAGAACCGGGCCAGAAGGTTTCCTGGAGAG
*******************************************************..(((((.....)))))((((((...((..((......))..))...)).))))....(((((((((((.................)))))))))))......********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 M059
embryo
 GSM343916
embryo
 GSM444067
head
 SRR902011
testis
..............................................................................................................................................................................................TTTACTCACAGCCGGCAAGGGATT..................................... 24 0 1 4.00 4 3 0 1 0 0 0 0
.......................................................GATTATGGAAATCGTAGAGCGTGG............................................................................................................................................................................ 24 0 1 3.00 3 1 2 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGG............ 23 0 12 2.75 33 30 3 0 0 0 0 0
..................................................GAGTGGATTATGGAAATCGTAGA.................................................................................................................................................................................. 23 0 2 2.50 5 0 5 0 0 0 0 0
..........................................................TATGGAAATCGTAGAGCGTGGAAGGA....................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0
......................................................................................................................................TTTAAAGTGAGTACAGGAAAAAGG............................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................TATGGAAATCGTAGAGCGTGGAAG......................................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGCAGG............ 23 1 12 1.25 15 13 0 0 0 2 0 0
..............................................................................................................................................................................................TTTACTCACAGCCGGCAAGGGA....................................... 22 0 4 1.25 5 5 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAG............. 22 0 15 1.00 15 11 2 0 0 1 1 0
.........................................................................................AACGTCGACTCAGCACCGCTGAA........................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................TTTAAAGTGAGTACAGGAAAAAGGCG........................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................GAGTACAGGAAAAAGGCGGAC........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................GATTATGGAAATCGTAGAGCGTG............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
......................................................GGATTATGGAAATCGTAGAGCGT.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTTACTCACAGCCGGCAAGGGATTTA................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................GAAGAGTAACGTCGACTCAGCACCGC............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................GGAAATCGTAGAGCGTGGAAGGA....................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................TTATGGAAATCGTAGAGCGTGGAAG......................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
......................................................GGATTATGGAAATCGTAGAGCGTGG............................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................TAACGTCGACTCAGCACCGCTGA............................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................CGTGGAAGGAAGAGTAACGTCGACT........................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TAAATTGTAATGCAGGAAATTTTA......................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGGT........... 24 0 12 0.75 9 4 0 0 4 1 0 0
......................................................................................................................................TTTGAAGTGAGTACAGGAAAAA............................................................................................... 22 1 7 0.71 5 3 0 0 0 2 0 0
...............................................................AATTCGTAGAGCGTGGAA.......................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................TTTGAAGTGAGTACAGGAAAAGG.............................................................................................. 23 2 20 0.50 10 7 0 0 0 3 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGCA.............. 21 1 15 0.40 6 5 0 0 1 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAA.............. 21 0 15 0.40 6 6 0 0 0 0 0 0
.......................................................GATTATGGAATTCGTAGAGCGTGG............................................................................................................................................................................ 24 1 5 0.40 2 1 0 0 1 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGCAG............. 22 1 15 0.40 6 6 0 0 0 0 0 0
.............................................................GGAATTCGTAGAGCGTGG............................................................................................................................................................................ 18 1 5 0.40 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAG................ 19 0 15 0.33 5 5 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGCAGGT........... 24 1 12 0.33 4 4 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCACCAGAACCGGGCCAGCAGG............ 22 1 12 0.33 4 4 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGA............... 20 0 15 0.27 4 4 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGGTT.......... 25 0 12 0.25 3 2 0 0 1 0 0 0
.........................................................................................................................................................................................GAAATTTTACTCACAGCCGGCAAGGGA....................................... 27 0 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................TTTGAAGTGAGTACAGGAAAA................................................................................................ 21 1 18 0.22 4 4 0 0 0 0 0 0
......................................................................................................................................................................................................................TAGCCACCAGAACCGGGCCAGC............... 22 1 9 0.22 2 2 0 0 0 0 0 0
..........................................................TATGGAATTCGTAGAGCGTGGA........................................................................................................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0 0
...........................................................ATGGAATTCGTAGAGCGTGG............................................................................................................................................................................ 20 1 5 0.20 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCACCAGAACCGGGCCAGAAGGT........... 23 0 12 0.17 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCACCAGAACCGGGCCAGAAGG............ 22 0 12 0.17 2 2 0 0 0 0 0 0
..............................................................................................................................................................CCGACGATCAAATAAATT........................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0
.......................................................................................................................................TTGAAGTGAGTACAGGAAAAGG.............................................................................................. 22 2 20 0.15 3 3 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCACCAGAACCGGGCCAGAAG............. 21 0 15 0.13 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAA............. 22 1 15 0.13 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCACCAGAACCGGGCCAGCAG............. 21 1 15 0.13 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGCCACCAGAACCGGGCCAGA............... 21 0 15 0.13 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................GCCGTTAAGGGATTTATCC................................ 19 3 8 0.13 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TAGCCACCAGAACCGGGCCAGAA.............. 23 0 9 0.11 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TAGCCACCAGAACCGGGCCAGCA.............. 23 1 9 0.11 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TTGTAATGCAGGAAATTTTACTC...................................................... 23 0 10 0.10 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAACCGGGCCAGCAGGTTTCCTGGA... 25 1 10 0.10 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TAATGCAGGAAATTTTACTCACAGCCG............................................... 27 0 10 0.10 1 1 0 0 0 0 0 0
....................................................................................................................................................................................TGCAGGAAATTTTACTCACAGCCGG.............................................. 25 0 10 0.10 1 1 0 0 0 0 0 0
................................................................................................................................................GTACAGTAAAAAGTTGGACG....................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TAATGCAGGAAATTTTACTCACAGCC................................................ 26 0 10 0.10 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GCAGGAAATTTTACTCACAGCCGG.............................................. 24 0 10 0.10 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACCAGAACCGGGCCAGAAGG............ 20 0 12 0.08 1 1 0 0 0 0 0 0
.......................ATAGGAGTGAAAATATTAGAAAACAT.......................................................................................................................................................................................................... 26 1 12 0.08 1 0 0 0 0 0 0 1
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGGC........... 24 1 12 0.08 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................CGCCACCAGAACCGGGCCAGAAGGT........... 25 1 12 0.08 1 1 0 0 0 0 0 0
..................................................GATTGGATTATGGAAATCGTAGAGC................................................................................................................................................................................ 25 1 13 0.08 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................TTTACTCACAGCCGGCAAGG......................................... 20 0 13 0.08 1 1 0 0 0 0 0 0
................................................................................................................................................................................................TACTCACAGCCGGCAAGGT........................................ 19 1 14 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAACTCT.......... 25 3 15 0.07 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGC............... 20 1 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCA................. 18 0 15 0.07 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGCCACCAGAACCGGGCCAGAAG............. 23 0 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGCAC............. 22 2 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGCAA............. 22 2 15 0.07 1 1 0 0 0 0 0 0
..............................TGAACATAGTAGAAAACA........................................................................................................................................................................................................... 18 2 15 0.07 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................AGCCACCAGAACCGGGCCAGAA.............. 22 0 15 0.07 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CACCAGAACCGGGCCAGAAG............. 20 0 15 0.07 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCACCAGAACCGGGCCAGCA.............. 20 1 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGT............ 23 1 15 0.07 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................................GCCACCAGAACCGGGCCGGAAGG............ 23 1 18 0.06 1 1 0 0 0 0 0 0
......................................................................................................................................TTTGAAGTGAGTACAGGAAA................................................................................................. 20 1 19 0.05 1 1 0 0 0 0 0 0
................................................TGGAGTTGTTTATGGAAA......................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................GAACCGGGCCAGATGGTTGT........ 20 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

TATACATTTCCTTTTCCCCTATTTATCCTTACTTTTATAATCTTTTGTACCTCACCTAATACCTTTAGCATCTCGCACCTTCCTTCTCATTGCAGCTGAGTCGTGGCGACTTTAAAACACGAATTTAGTCTTTGAAATTTCACTCATGTCCTTTTTCCGCCTGCTCGTTTATTTAACATTACGTCCTTTAAAATGAGTGTCGGCCGTTCCCTAAATCGGTGGTCTTGGCCCGGTCTTCCAAAGGACCTCTC
*********************************************************************************************..(((((.....)))))((((((...((..((......))..))...)).))))....(((((((((((.................)))))))))))......******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902010
ovaries
 M059
embryo
 GSM343916
embryo
 GSM444067
head
....................................................................................TCTCATTGCAGCTGAGTCGTGGCGACT............................................................................................................................................ 27 0 1 3.00 3 3 0 0 0 0 0
......................................................................................................................ACGAATTTAGTCTTTGAAATTTCACT........................................................................................................... 26 0 1 3.00 3 2 1 0 0 0 0
....................................................................................................................ACACGAATTTAGTCTTTGAAATTTCACT........................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................TTAACATTACGTCCTTTAAAATGAGTGT................................................... 28 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................CTCATTGCAGCTGAGTCGTGGCGACT............................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................TTGCAGCTGAGTCGTGGCGACTTT.......................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................ATGTCCTTTTTCCGCCTGCTCGT................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................CTAATACCTTAAGCATCTCGCACCT........................................................................................................................................................................... 25 1 5 1.80 9 9 0 0 0 0 0
.....................................................................................................................................................................................................................AATCGGTGGTCTTGGCCCGGTCTTCT............ 26 1 4 1.25 5 4 0 1 0 0 0
.............................................................................................................................................................CGCCTGCTCGTTTATTTAACATTACGTG.................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................CGGCCGTTCCCTAAATCGGTGGTCT.......................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................CACGAATTTAGTCTTTGAAATTTCACT........................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GCCGTTCCCTAAATCGGTGGTCTT......................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TTGCAGCTGAGTCGTGGCGACT............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................GCACCTTCCTTCTCATTGCAGCTG......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................CTTCCTTCTCATTGCAGCTGAGT...................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................CGAATTTAGTCTTTGAAATTTCACT........................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................TTCTCATTGCAGCTGAGTCGTGGCGACT............................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................CTTTAGCATCTCGCACCTTCCT....................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................CTCATTGCAGCTGAGTCGTGGCGACTT........................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................ACGGCCGTTCCCTAAATCGGTGGT............................ 24 1 1 1.00 1 1 0 0 0 0 0
..............................................GTACCTCACCTAATACCTTTAGCAT.................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................TTCACTCATGTCCTTTTTCCGCCT......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................ATCGGTGGTCTTGGCCCGGTCT............... 22 0 9 0.89 8 7 0 0 0 1 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCT............... 19 0 15 0.87 13 12 0 1 0 0 0
...............................................................................................................................................TCATGTGCTTTTTTAGCCTG........................................................................................ 20 3 6 0.67 4 4 0 0 0 0 0
......................................................................................................................................................................................................................ATCGGTGGTCTTGGCCCGGTCTTC............. 24 0 9 0.67 6 6 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCTTC............. 21 0 15 0.60 9 9 0 0 0 0 0
................................................ACCTCACCTAATACCTTTAGCAT.................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................ATCGGTGGTCTTGGCCCGGTCTT.............. 23 0 9 0.44 4 3 0 1 0 0 0
.......................................................CTAATACCTTAAGCATCTCGCACC............................................................................................................................................................................ 24 1 5 0.40 2 2 0 0 0 0 0
............................................................................................................................................................................................................................GGTCTTGGCCCGGTCTTC............. 18 0 15 0.40 6 6 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCTT.............. 20 0 15 0.40 6 5 0 0 1 0 0
........................................................................................................................................................................................................................CGGTGGTCTTGGCCCGGTCT............... 20 0 15 0.33 5 5 0 0 0 0 0
.................................................................................................................................................................................ATTACGTCCTTTAAAATGAGTGT................................................... 23 0 10 0.30 3 3 0 0 0 0 0
..........................................................................................................................................................................................................................GTGGTCTTGGCCCGGTCT............... 18 0 15 0.27 4 3 0 0 1 0 0
........................................................................................................................................................................................................................CGGTGGTCTTGGCCCGGTCTTC............. 22 0 15 0.27 4 4 0 0 0 0 0
..........................................................................................................................................................................................................................GTGGTCTTGGCCCGGTCTTC............. 20 0 15 0.27 4 4 0 0 0 0 0
.............................................................................................................................................................................TAACATTACGTCCTTTAAAATGAGTGT................................................... 27 0 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................................................................................AAAATGGTGGTCTTGGCCCGGTCTTCT............ 27 3 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................................................................................AAATCGGTGGTCTTGGCCCGGTCTTCT............ 27 1 4 0.25 1 1 0 0 0 0 0
...................................................................................................................................................................................................................AAAATCGGTGGTCTTGGCCCGGTCTTCT............ 28 2 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................................................................TAACATTACGTCCTTTAAAATGAGTG.................................................... 26 0 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCTTCC............ 22 0 12 0.25 3 3 0 0 0 0 0
....................................................................................................................................................................................................................................CCCGGTCTTCCAAAGGACCTCT. 22 0 9 0.22 2 2 0 0 0 0 0
.......................................................CTAATACCTTAAGCATCTCGCACCTA.......................................................................................................................................................................... 26 2 5 0.20 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTGGTCTTGGCCCGGTCTT.............. 19 0 15 0.20 3 3 0 0 0 0 0
...............................................................................................................................................................................ACATTACGTCCTTTAAAATGAGTGT................................................... 25 0 10 0.20 2 2 0 0 0 0 0
....................................................................................................................................................................................................................................CCCGGTCGTCCAAAGGACCT... 20 1 11 0.18 2 2 0 0 0 0 0
...........................................................................................................................................................................................................................TGGTCTTGGCCCGGTCTTCCAA.......... 22 0 12 0.17 2 2 0 0 0 0 0
........................................................................................................................................................................................................................AGGTGGTCTTGGCCCGGTCT............... 20 1 15 0.13 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................ATGGTCTTGGCCCGGTCTTC............. 20 1 15 0.13 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGTTCT............... 19 1 15 0.13 2 1 0 0 1 0 0
......................................................................................................................................................................................................................AAATGTGGTCTTGGCCCGGTCT............... 22 3 9 0.11 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................GCCCGGTCTTCCAAAGGACCTCT. 23 0 9 0.11 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GGCCGTTCCTTAAAGCGATG.............................. 20 3 18 0.11 2 1 0 0 0 0 1
..................................................................................................................................................................................TTACGTCCTTTAAAATGAGTGT................................................... 22 0 10 0.10 1 1 0 0 0 0 0
...............................................................................................................................................................................ACATTACGTCCTTTAAAATGAGTG.................................................... 24 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................CATTACGTCCTTTAAAATGAGTGT................................................... 24 0 10 0.10 1 1 0 0 0 0 0
...................................................................................................................................................................................TACGTCCTTTAAAATGAGTG.................................................... 20 0 10 0.10 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGGTCTTGGCCCGGTCTTCCAAAGG....... 25 0 11 0.09 1 1 0 0 0 0 0
....................................................................CATCTCGCACCTGCCTTCTC................................................................................................................................................................... 20 1 11 0.09 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTGGTCTTGGCCCGGTCTTCCAAAGG....... 26 0 11 0.09 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CGGTGGTCTTGGCCCGGTCTTCCAAA......... 26 0 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCTTCCAAAG........ 26 0 12 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................ATGGTCTTGGCCCGGTCTTCC............ 21 1 12 0.08 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GGTCTTGGCCCGGTCTTCCAAA......... 22 0 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCGGTGGTCTTGGCCCGGTCTTCC............ 24 0 12 0.08 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CGGTGGTCTTGGCCCGGTCTTCCAAAG........ 27 0 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCTTCCA........... 23 0 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCTTCCAAA......... 25 0 12 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTGGTCTTGGCCCGGTCTTCCA........... 22 0 12 0.08 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CGGTGGTCTTGGCCCGGTCTTCCA........... 24 0 12 0.08 1 1 0 0 0 0 0
...................................TATAATCTTTTGTACCTAACCTAGT............................................................................................................................................................................................... 25 2 14 0.07 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................TCGGTGGTCTTGGCCCGGTCTTC............. 23 0 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TTGTGGTCTTGGCCCGGTCTT.............. 21 2 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CGGTGGTCTTGGCCCGGTC................ 19 0 15 0.07 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................GGTGGTCTTGGCCCGGTCTTG............. 21 1 15 0.07 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCGGTGGTCTTGGCCCGGTC................ 20 0 15 0.07 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TGTGGTCTTGGCCCGGTCT............... 19 1 15 0.07 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCGGTGGTCTTGGCCCGGTCT............... 21 0 15 0.07 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................AATGGTCTTGGCCCGGTCTT.............. 20 2 15 0.07 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AGGTCTTGGCCCGGTCTTC............. 19 1 15 0.07 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TTCGGTGGTCTTGGCCCGGTCT............... 22 1 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AGATGGTCTTGGCCCGGTCT............... 20 2 15 0.07 1 0 0 0 0 1 0
.......................................................................................................................................................................................................................TCGGTGGTCTTGGCCCGGTCTT.............. 22 0 15 0.07 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TTGGTGGTCTTGGCCCGGTCTT.............. 22 1 15 0.07 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................AATGGTCTTGGCCCGGTCT............... 19 2 15 0.07 1 0 0 0 0 1 0
.........................................................................................................................................................................................................................GGTCGTCTTCGCCCGGTCTTCA............ 22 3 16 0.06 1 0 0 0 0 1 0
.......................................................................................................................................................................................................................AAGGTGGTCTTGGCCCGGTCT............... 21 2 16 0.06 1 1 0 0 0 0 0
........................................................................................................................................................................................................................ATGTGGTCTTGGCCCGGTCT............... 20 2 16 0.06 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AAGTGGTCTTGGCCCGGTCT............... 20 2 16 0.06 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TAAGGTGGTCTTGGCCCGGTCTT.............. 23 3 16 0.06 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................AAGGTCTTGGCCCGGTCTT.............. 19 2 17 0.06 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AAATGGTCTTGGCCCGGTCT............... 20 3 17 0.06 1 1 0 0 0 0 0
........................................................................................................CGCAGCTTTAAAACACGAAT............................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
............................................................................................................................................................................................................................GGTCTTGGCCCGGTCTCT............. 18 2 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_245:7576-7826 - dps_2321 ATATGTAAAGGAAAAGGGGATAAATAGGAATGAAAATATTAGAAAACATGGAGTGGATTATGGAAATCGTAGAGCGTGGAA---GGAAGAGTAACGTCGACTCAGCACCGCTGAAATTTTGTGCTTA-AATCAGAAACTTTAAAGTGAGTACAGGAAAAAGGCGGACGAGC-------AAATAAATTGTAATGCAGGAAATTTTACTCACAGCCGGCAAGGGATTTAGCCACCAGAACCGGGCCAGAAGGTTTCCTGGAGAG
droPer2 scaffold_126:50259-50501 + ATTAGTAAGGGAAAAAGGGATAAATAGGAGTGAAAATATTAGAAAACGTGGATTGGATTATGGAAATCGTGGAGCGTGGAC---GGAAGAGTAACGTCGAAATA-------TGAAATTTTGTGCTTA-AATCAGAAAGTTTGAAGTGAGTACAGAAAAA-GGCGGGCGTGC-------AAATACGTTGTAATGCAGGAAATTTTACTCACAGCCGGCAAGGAATACAGCCACCAGAACCGGGCCAGAAGGTTTCCTGGAGAG
droWil2 scf2_1100000013318:454-472 + CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGTGCTGGACAG
droBip1 scf7180000391825:470-545 - ATC---------------------------------------------------------------------------------------------------------------------------------AGAAATTTTAATGTAGCTACAGGGAAAGA-ACAGACAGCAGACGGTGTATTAATTCCAAATCAGGAAATTCAAC--------------------------------------------------------
droKik1 scf7180000301551:5821-5863 - AAA------GGAATAGCCGAAAACAAGGAAGGAGAATACTAGAAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453144:2590-2647 + AAATGTAAAAGTAAAAGAAATAAATAACAATAAATGTATAGAAAAAAGTAATGTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000761664:455-502 - ACAATTAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------TTGATAAGT-------AAATGAGTATTAATACAGAAAATTTTA---------------------------------------------------------
droBia1 scf7180000297854:87361-87495 + TTA--------------------------------------AAACCCATGACAGGAACGTCGAACATAGTAGAGCATCAAATCACGATGAAGGACGACAAACCAATAAAGCAGCGATACTACCCCAAGAACCCGAAACTTCAAGGGGAGGTCAATGCGAAGGTGGACGAGT-------AA----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATATGTAAAGGAAAAGGGGATAAATAGGAATGAAAATATTAGAAAACATGGAGTGGATTATGGAAATCGTAGAGCGTGGAA---GGAAGAGTAACGTCGACTCAGCACCGCTGAAATTTTGTGCTTA-AATCAGAAACTTTAAAGTGAGTACAGGAAAAAGGCGGACGAGC-------AAATAAATTGTAATGCAGGAAATTTTACTCACAGCCGGCAAGGGATTTAGCCACCAGAACCGGGCCAGAAGGTTTCCTGGAGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................TTTACTCACAGCCGGCAAGGGATT.....................................2414.0040300001000
.......................................................GATTATGGAAATCGTAGAGCGTGG.......................................................................................................................................................................................2413.0030100000200
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGG............23122.753303000000300
..................................................GAGTGGATTATGGAAATCGTAGA.............................................................................................................................................................................................2322.5050000000500
..........................................................TATGGAAATCGTAGAGCGTGGAA---GGA...............................................................................................................................................................................2612.0020000000200
..........................................................................................................................................TTTAAAGTGAGTACAGGAAAAAGG....................................................................................................2412.0020200000000
..........................................................TATGGAAATCGTAGAGCGTGGAA---G.................................................................................................................................................................................2412.0020000000200
.........................................................................................................................................................................................................TTTACTCACAGCCGGCAAGGGA.......................................2241.2550500000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAG.............22151.001501100110200
............................................................................................AACGTCGACTCAGCACCGCTGAA...................................................................................................................................................2311.0010100000000
..........................................................................................................................................TTTAAAGTGAGTACAGGAAAAAGGCG..................................................................................................2611.0010100000000
..................................................................................................................................................GAGTACAGGAAAAAGGCGGAC...............................................................................................2111.0010100000000
.......................................................GATTATGGAAATCGTAGAGCGTG........................................................................................................................................................................................2311.0010100000000
......................................................GGATTATGGAAATCGTAGAGCGT.........................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................TTTACTCACAGCCGGCAAGGGATTTA...................................2611.0010100000000
.....................................................................................GAAGAGTAACGTCGACTCAGCACCGC.......................................................................................................................................................2611.0010100000000
.............................................................GGAAATCGTAGAGCGTGGAA---GGA...............................................................................................................................................................................2311.0010100000000
.........................................................TTATGGAAATCGTAGAGCGTGGAA---G.................................................................................................................................................................................2511.0010000000100
......................................................GGATTATGGAAATCGTAGAGCGTGG.......................................................................................................................................................................................2511.0010100000000
...........................................................................................TAACGTCGACTCAGCACCGCTGA....................................................................................................................................................2311.0010000000100
..........................................................................CGTGGAA---GGAAGAGTAACGTCGACT................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................TAAATTGTAATGCAGGAAATTTTA.........................................................2411.0010000000100
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGGT...........24120.7590440100000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAA..............21150.4060600000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAG................19150.3350500000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGA...............20150.2740400000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGGTT..........25120.2530210000000
....................................................................................................................................................................................................GAAATTTTACTCACAGCCGGCAAGGGA.......................................2740.2510100000000
.................................................................................................................................................................................................................................TAGCCACCAGAACCGGGCCAGC...............2290.2220200000000
....................................................................................................................................................................................................................................CCACCAGAACCGGGCCAGAAGGT...........23120.1720200000000
....................................................................................................................................................................................................................................CCACCAGAACCGGGCCAGAAGG............22120.1720200000000
....................................................................................................................................................................................................................................CCACCAGAACCGGGCCAGAAG.............21150.1320200000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAA.............22150.1320200000000
..................................................................................................................................................................................................................................AGCCACCAGAACCGGGCCAGA...............21150.1320200000000
.................................................................................................................................................................................................................................TAGCCACCAGAACCGGGCCAGAA..............2390.1110100000000
.........................................................................................................................................................................................TTGTAATGCAGGAAATTTTACTC......................................................23100.1010100000000
............................................................................................................................................................................................TAATGCAGGAAATTTTACTCACAGCCG...............................................27100.1010100000000
...............................................................................................................................................................................................TGCAGGAAATTTTACTCACAGCCGG..............................................25100.1010100000000
............................................................................................................................................................................................TAATGCAGGAAATTTTACTCACAGCC................................................26100.1010100000000
................................................................................................................................................................................................GCAGGAAATTTTACTCACAGCCGG..............................................24100.1010100000000
......................................................................................................................................................................................................................................ACCAGAACCGGGCCAGAAGG............20120.0810100000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGGC...........24120.0810010000000
.........................................................................................................................................................................................................TTTACTCACAGCCGGCAAGG.........................................20130.0810100000000
...........................................................................................................................................................................................................TACTCACAGCCGGCAAGGT........................................19140.0710100000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGC...............20150.0710100000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCA.................18150.0710100000000
..................................................................................................................................................................................................................................AGCCACCAGAACCGGGCCAGAAG.............23150.0710100000000
..................................................................................................................................................................................................................................AGCCACCAGAACCGGGCCAGAA..............22150.0710100000000
.....................................................................................................................................................................................................................................CACCAGAACCGGGCCAGAAG.............20150.0710100000000
...................................................................................................................................................................................................................................GCCACCAGAACCGGGCCAGAAGT............23150.0710010000000
droPer2
ATTAGTAAGGGAAAAAGGGATAAATAGGAGTGAAAATATTAGAAAACGTGGATTGGATTATGGAAATCGTGGAGCGTGGAC---GGAAGAGTAACGTCGAAATA-------TGAAATTTTGTGCTTA-AATCAGAAAGTTTGAAGTGAGTACAGAAAAA-GGCGGGCGTGC-------AAATACGTTGTAATGCAGGAAATTTTACTCACAGCCGGCAAGGAATACAGCCACCAGAACCGGGCCAGAAGGTTTCCTGGAGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................ATTGGATTATGGAAATCGTGGAGC...........................................................................................................................................................................................24202.20441360007
...................................................ATTGGATTATGGAAATCGTGGAG............................................................................................................................................................................................23201.10220201001
..........................................................................................................................................TTTGAAGTGAGTACAGAAAAA-GGC...................................................................................................2470.574040000
..........................................................................................................................................TTTGAAGTGAGTACAGAAAAA-GG....................................................................................................2370.433030000
..........................................................................................................................................TTTGAAGTGAGTACAGAAAAA-GGCG..................................................................................................2570.433030000
...................................................ATTGGATTATGGAAATCGTGGA.............................................................................................................................................................................................22200.357070000
...................................................ATTGGATTATGGAAATCGTGG..............................................................................................................................................................................................21200.306050001
.......................................................................................................................................................................................................................GCAAGGAATACAGCCACCAGAAC........................23130.233030000
.....................................................................................................................................................................................TACGTTGTAATGCAGGAAATTTTACTCAC....................................................2960.171010000
.......................................................................................................................................................................................................................GCAAGGAATACAGCCACCAGAA.........................22130.152020000
.......................................................................................................................................................................................................................GCAAGGAATACAGCCACCAGA..........................21130.152011000
.......................................................................................................................................................................................................................GCAAGGAATACAGCCACCAGAACC.......................24130.152020000
...........................................................................................................................................TTGAAGTGAGTACAGAAAAA-GGCGG.................................................................................................2570.141010000
...........................................................................................................................................TTGAAGTGAGTACAGAAAAA-GGC...................................................................................................2370.141010000
.............................................................................................................................................GAAGTGAGTACAGAAAAA-GGCGG.................................................................................................2370.141010000
..........................................................................................................................................TTTGAAGTGAGTACAGAAAAA-GGCGG.................................................................................................2670.141010000
..........................................................................................................................................TTTGAAGTGAGTACAGAAAAA-G.....................................................................................................22150.132020000
.......................................................................................................................................................................................................................GCAAGGAATACAGCCACCAGAACCGGG....................27100.101010000
...................................................ATTGGATTATGGAAATCGTGGAGCGT.........................................................................................................................................................................................26200.102020000
...................................................ATTGGATTATGGAAATCGTGGAGCG..........................................................................................................................................................................................25200.102020000
....................................................TTGGATTATGGAAATCGTGGAGC...........................................................................................................................................................................................23200.102020000
...................................................ATTGGATTATGGAAATCGTGGAGA...........................................................................................................................................................................................24200.102020000
.....................................................TGGATTATGGAAATCGTGGAGCGTGG.......................................................................................................................................................................................26200.102010001
........................................................................................................................................................................................................................CAAGGAATACAGCCACCAGAACCGGGTA..................28100.101010000
........................................................................AGCGTGGAC---GGAAGAGTAACGTCGAAA................................................................................................................................................................27120.081010000
.......................................................................................................................................................................................................................GCAAGGAATACAGCCACCAGAAA........................23130.081010000
................................................................................................................................................................................................GCAGGAAATTTTACTCACAGCCG...............................................23130.081010000
...............................................................................................................................................................................................TGCAGGAAATTTTACTCACAG..................................................21130.081001000
...............................................................................................................................................................................................TGCAGGAAATTTTACTCACAGCC................................................23130.081010000
.........................................................................GCGTGGAC---GGAAGAGTAACG......................................................................................................................................................................20140.071000001
.......................................................................................................................................................................................................................GCAAGGAATACAGCCACCA............................19140.071010000
............................................................................TGGAC---GGAAGAGTAACGT.....................................................................................................................................................................18160.061010000
..........................................................................................................................................TTTGAAGTGAGTACAGAAAAA-GT....................................................................................................23160.061001000
..............................................................................................................................................................................................................TCACAGCCGGCAAGGAATACA...................................21170.061010000
.....................................................TGGATTATGGAAATCGTGGAGCG..........................................................................................................................................................................................23200.051010000
....................................................TTGGATTATGGAAATCGTGGAGCGT.........................................................................................................................................................................................25200.051010000
ATTAGTAAGGGAAAAAGGGATAAA..............................................................................................................................................................................................................................................24200.051010000
.....................................................TGGATTATGGAAATCGTGGA.............................................................................................................................................................................................20200.051000001
...................................................ATTGGATTATGGAAATCGTGGAA............................................................................................................................................................................................23200.051010000
...........AAAAAGGGATAAATAGGA.........................................................................................................................................................................................................................................18200.051010000
..................................................GATTGGATTATGGAAATCGTGGA.............................................................................................................................................................................................23200.051010000
droWil2
CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGTGCTGGACAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droBip1
ATC---------------------------------------------------------------------------------------------------------------------------------AGAAATTTTAATGTAGCTACAGGGAAAGA-ACAGACAGCAGACGGTGTATTAATTCCAAATCAGGAAATTCAAC--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAA------GGAATAGCCGAAAACAAGGAAGGAGAATACTAGAAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAATGTAAAAGTAAAAGAAATAAATAACAATAAATGTATAGAAAAAAGTAATGTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACAATTAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------TTGATAAGT-------AAATGAGTATTAATACAGAAAATTTTA---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTA--------------------------------------AAACCCATGACAGGAACGTCGAACATAGTAGAGCATCAAATCACGATGAAGGACGACAAACCAATAAAGCAGCGATACTACCCCAAGAACCCGAAACTTCAAGGGGAGGTCAATGCGAAGGTGGACGAGT-------AA----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 04:03 AM