ID:

dps_2301

 Coordinate:

Unknown_singleton_1895:45685-45979 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA29172-cds]; exon [dpse_GLEANR_9720:1]; exon [dpse_GLEANR_9720:2]; CDS [Dpse\GA29172-cds]; intron [Dpse\GA29172-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGTGACTTCGAGGGTGAGTCTGAAGAAGGAGGAGCAGAGGACTTCGAGGGTGAGTCTGAAGAAGGAGGAGCAGAGGCAGGATGCCCCCGCCAATGACCCCGCCGGCAGTAGAAGCGTGCAAGTCCCGAAGAGGGTCCCAGGCCCCAATTCGAGTCCCAAACCGAATCCGATTCGAAAATTCCGGAAGCAGCGGCAACGTGAGTAAAGCCACACGCGGGGCAAAGATCCCGAAAACTAACAGAAAGCGAATCATAGGCAACATCCACGTCTCTGCCCAAAACAGGCAAAAGATAGAGGCAAGCCAGGAGCATGATCCTGACGATGTGCTCTAATAGCTCTTCTAGCTCCGGGAACTGGAACTGGAACTGGCCCCACTGTGTCCTTCGAGAAGCGC
**************************************************....(((((........((.((((((((.(((((.....(((.((((((((((.(((..((...((((((...(((.(((..(((((...)))))...((((((((.............))))))))..))).))).......)).))))...))..)))....))))))..............................)))).)))..)))))..))))))))))....)))))......((((((..(((..(((((((.(((.....))))))))))....))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902012
CNS imaginal disc
 V112
male body		 GSM343916
embryo
.......................AAGAAGGAGGAGGAGAGGACT............................................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................CAAGCCCGGAGCCTGATCCT............................................................................. 20 2 1 1.00 1 1 0 0 0
........................AGAAGGAGGAGGAGAGGACT............................................................................................................................................................................................................................................................................................................................................................... 20 1 2 1.00 2 2 0 0 0
...............................................................................................................................................................................AAGATGTCGGAAGCAGCGGCA....................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0
.......................AAGAAGGAGGAGGAGAGGA................................................................................................................................................................................................................................................................................................................................................................. 19 1 5 0.20 1 1 0 0 0
....................................................GCGTTTGAAGAAGGAGGTGCA.................................................................................................................................................................................................................................................................................................................................. 21 3 8 0.13 1 1 0 0 0
................GCGTTTGAAGAAGGAGGTGCA...................................................................................................................................................................................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0
...............................................................................................................GAAGCGTGCTGGGCCCGAAG........................................................................................................................................................................................................................................................................ 20 3 9 0.11 1 1 0 0 0
..............................................................................................................................................................AATCCGAAGCCGATTCGAAAA........................................................................................................................................................................................................................ 21 2 10 0.10 1 0 0 1 0
........................................................................................................................................................................................GAAGTAGCGGCGCCGTGAG................................................................................................................................................................................................ 19 3 16 0.06 1 1 0 0 0
.......................AAGAAGGAGGAGGAGAGG.................................................................................................................................................................................................................................................................................................................................................................. 18 1 19 0.05 1 1 0 0 0
...........................................................AAGAAGGAGGAGGAGAGG.............................................................................................................................................................................................................................................................................................................................. 18 1 19 0.05 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TCATGTAGGTCCGGGAAC........................................ 18 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

TCCACTGAAGCTCCCACTCAGACTTCTTCCTCCTCGTCTCCTGAAGCTCCCACTCAGACTTCTTCCTCCTCGTCTCCGTCCTACGGGGGCGGTTACTGGGGCGGCCGTCATCTTCGCACGTTCAGGGCTTCTCCCAGGGTCCGGGGTTAAGCTCAGGGTTTGGCTTAGGCTAAGCTTTTAAGGCCTTCGTCGCCGTTGCACTCATTTCGGTGTGCGCCCCGTTTCTAGGGCTTTTGATTGTCTTTCGCTTAGTATCCGTTGTAGGTGCAGAGACGGGTTTTGTCCGTTTTCTATCTCCGTTCGGTCCTCGTACTAGGACTGCTACACGAGATTATCGAGAAGATCGAGGCCCTTGACCTTGACCTTGACCGGGGTGACACAGGAAGCTCTTCGCG
**************************************************....(((((........((.((((((((.(((((.....(((.((((((((((.(((..((...((((((...(((.(((..(((((...)))))...((((((((.............))))))))..))).))).......)).))))...))..)))....))))))..............................)))).)))..)))))..))))))))))....)))))......((((((..(((..(((((((.(((.....))))))))))....))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
....................................................................................................................................................................................................................................................................................................................CGGACTAGGACTGCCACACGA.................................................................. 21 2 1 1.00 1 1 0 0
....................................................................................................................................................................................................................................................................................................................................CACGAGATTATCGTAAAGA.................................................... 19 2 3 0.33 1 1 0 0
...........................................................................................................................................................................................................................................................................................................TTCGGTCCTCGTAGTAGGGCT........................................................................... 21 2 10 0.20 2 2 0 0
.............................................................................................................................................................................................................TGTGGTGTGCGCCCCGTTGC.......................................................................................................................................................................... 20 3 5 0.20 1 0 1 0
..............................................................................................................................................GAGGTTAAGCCCAGTGTTTG......................................................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0
.....................................................................................................................................................................................................................................................................................................................................ACGAGATTATCGTAAAGACC.................................................. 20 3 9 0.11 1 1 0 0
.....................................................................................................................................................................................................................................................................................................................................ACGAGATTATCGTAAAGA.................................................... 18 2 10 0.10 1 1 0 0
...............................................................................................................................................................................TTTTAAGACCTTCGGCGACG........................................................................................................................................................................................................ 20 3 12 0.08 1 1 0 0
.......................................................................ATGTCCGTCCTACGGGGGCT................................................................................................................................................................................................................................................................................................................ 20 3 14 0.07 1 0 0 1
..............................................................................................................................................................................................................................................................................AGACGGGTTTTGTGGGTT........................................................................................................... 18 2 15 0.07 1 0 1 0
......................................................................................................................................................GCTCAGGGTTTGGTTTTGG.................................................................................................................................................................................................................................. 19 2 17 0.06 1 1 0 0
...............................CCTCGTCGCCTGAAGTTAC......................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1
.........................................................................................................................................................................................................................................................TAGTATCCGTAGTAGGAG................................................................................................................................ 18 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_1895:45635-46029 + dps_2301 AGGTGACTTCGAGGGTGAGTCTGAAGAAGGAGGAGCAGAGGACTTCGAGGGTGAGTCTGAAGAAGGAGGAGCAGAGGCAGGATGCCCCCGCCAATGACCCCGCCGGCAGTAGAAGCGTGCAAGTCCCGAAGAGGGTCCCAGGCCCCAATTCGAGTCCCAAACCGAATCCGATTCGAAAATTCCGGAAGCAGCGGCAACGTGAGTAAAGCCACACGCGGGGCAAAGATCCCGAAAACTAACAGAAAGCGAATCATAGGCAACATCCACGTCTCTGCCCAAAACAGGCAAAAGATAGAGGCAAGCCAGGAGCATGATC-CTGACGATGTGCTCTAATAGCTCTTCTAGCTCCGGGAACTGGAACTGGAACTGGCCCCACTGTGTCCTTCGAGAAGCGC
droPer2 scaffold_12:452864-452991 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGCCCAAAGCAGACATAAGATAGACGCAAGTCAGGAGGATGATCACTGACGATGTGCTCTAATCGCTCTGCTAGCTC-AAGAACTCGGACTAGATCTGGCTCCACTGTGTCCTTCGAGGAGCGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGGTGACTTCGAGGGTGAGTCTGAAGAAGGAGGAGCAGAGGACTTCGAGGGTGAGTCTGAAGAAGGAGGAGCAGAGGCAGGATGCCCCCGCCAATGACCCCGCCGGCAGTAGAAGCGTGCAAGTCCCGAAGAGGGTCCCAGGCCCCAATTCGAGTCCCAAACCGAATCCGATTCGAAAATTCCGGAAGCAGCGGCAACGTGAGTAAAGCCACACGCGGGGCAAAGATCCCGAAAACTAACAGAAAGCGAATCATAGGCAACATCCACGTCTCTGCCCAAAACAGGCAAAAGATAGAGGCAAGCCAGGAGCATGATC-CTGACGATGTGCTCTAATAGCTCTTCTAGCTCCGGGAACTGGAACTGGAACTGGCCCCACTGTGTCCTTCGAGAAGCGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTGCCCAAAGCAGACATAAGATAGACGCAAGTCAGGAGGATGATCACTGACGATGTGCTCTAATCGCTCTGCTAGCTC-AAGAACTCGGACTAGATCTGGCTCCACTGTGTCCTTCGAGGAGCGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 03:59 AM