ID:

dps_2270

 Coordinate:

Unknown_group_85:6059-6209 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2 -3.6 -3.6

Flybase annnotation

CDS [Dpse\GA29195-cds]; exon [dpse_GLEANR_9752:1]; intron [Dpse\GA29195-in]

Repeatable elements

NameClassFamilyStrand
TransibN1_DPDNACMC-Transib-
mature
  1. dps_2270  Unknown_group_85:6115-6141 +
  2. XL_group1e:2727067-2727093 +
  3. XL_group1a:3960494-3960520 +
  4. Unknown_group_590:6519-6545 +
  5. Unknown_singleton_1978:910-936 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCACATATTTTCGTTCAAACATCTTTGAATTTTACCGGCATTTGTTCCGGTATGTTGCCAAAAGGTAACAAATTTTCTTGCTGGTATCTTCAAAAGCTTTATTAATTTCATATGATATGTCGCCTTAAGATCCGTTTTCAAATAATTGATAATTTTATCCTTCTCTGAATTCCATACGGCAAACAAATCTGCATTTTTGAATTTGAGGTTATGCTTTATTAATGCAAATTCCAAGAATTGTGGTAAAAAG
**********************************************************************************************************..........................((((.((((.......((((....))))......))))......)))).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 SRR902011
testis
 M059
embryo
 GSM343916
embryo
 V112
male body		 M062
head
..........................................................................................................TTTCATATGATATGTCGCCTTAAGATC...................................................................................................................... 27 0 5 4.60 23 19 4 0 0 0 0 0
......TATTTTCGTTCAAACATCTTTGAATT........................................................................................................................................................................................................................... 26 0 6 4.50 27 27 0 0 0 0 0 0
..........................................................................................................TTTCATATGATATGTCGCCTTAAGA........................................................................................................................ 25 0 7 4.00 28 21 5 1 0 1 0 0
.......................................................................................................TAATTTCATATGATATGTCGCCT............................................................................................................................. 23 0 6 3.67 22 8 12 0 1 0 0 1
............................................................................................................................................................................................................................TAATGCAAATTCCAAGAATTGTGG....... 24 0 6 2.83 17 8 9 0 0 0 0 0
..........................................................................................................TTTCATATGATATGTCGCCTTAAG......................................................................................................................... 24 0 7 2.14 15 15 0 0 0 0 0 0
............................................................................................................................................................TATCCTTCTCTGAATTCCATACGGC...................................................................... 25 0 1 2.00 2 0 1 1 0 0 0 0
..........................................................................................................TTTCATATGATATGTCGCCTTAAGAT....................................................................................................................... 26 0 5 1.60 8 7 1 0 0 0 0 0
......TATTTTCGTTCAAACATCTTTGAATTT.......................................................................................................................................................................................................................... 27 0 6 1.33 8 8 0 0 0 0 0 0
......TATTTTCGTTCAAACATCTTTGAAT............................................................................................................................................................................................................................ 25 0 6 1.33 8 8 0 0 0 0 0 0
..................................................................................................................................................................TCTCTGAATTCCATACGGCAAACAAATC............................................................. 28 0 4 1.25 5 5 0 0 0 0 0 0
............................................................................................................TCATATGATATGTCGCCTTAAGATC...................................................................................................................... 25 0 5 1.20 6 3 3 0 0 0 0 0
.........................................................................................................................................................TTTTATCCTTCTCTGAATTCCATACGGC...................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................TGATAATTTTATCCTTCTCTGAATTCC............................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................................................ATCCTTCTCTGAATTCCATACGGCAAACA................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................TAATTTCATATGAGATGTCGCCT............................................................................................................................. 23 1 6 0.67 4 4 0 0 0 0 0 0
......TATTTTCGTTCAAACATCTTTGAA............................................................................................................................................................................................................................. 24 0 6 0.67 4 4 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTAATGCAAATTCCAAGAATTGTGG....... 25 0 6 0.67 4 4 0 0 0 0 0 0
.......................................................................................................TAATTTCATATGATATGTCGCCTTAA.......................................................................................................................... 26 0 5 0.60 3 2 1 0 0 0 0 0
............................................................................................................TCATATGATATGTCGCCTTAAGATCC..................................................................................................................... 26 0 5 0.60 3 0 3 0 0 0 0 0
......TATTTTCGTTCAAACATGTTTGAATT........................................................................................................................................................................................................................... 26 1 7 0.57 4 4 0 0 0 0 0 0
..CATATATTTTCGTTCAAACATCTT................................................................................................................................................................................................................................. 24 1 6 0.50 3 3 0 0 0 0 0 0
............................................................................................................TCATATGATATGTCGCCTTAAGATCCGT................................................................................................................... 28 0 4 0.50 2 0 2 0 0 0 0 0
..........................................................................................................TTTCATATGATATGTCGCCTTAAGT........................................................................................................................ 25 1 8 0.50 4 3 1 0 0 0 0 0
..........................................................................TTTCTTGCTGGTATCTTCAAAAGC......................................................................................................................................................... 24 0 5 0.40 2 0 2 0 0 0 0 0
.......................................................................................................TAATTTCATATGATATGTCGCCTTAAGA........................................................................................................................ 28 0 5 0.40 2 0 2 0 0 0 0 0
..........................................................................TTTCTTGCTGGTATCTTCAAAAGCT........................................................................................................................................................ 25 0 5 0.40 2 0 1 0 0 1 0 0
....................................................................................................................................................................................................................................ATTCCAAGAATTGTGGTAAAAAG 23 0 3 0.33 1 1 0 0 0 0 0 0
......TATTTTCGTTCAAACATCTTTGAATTTCA........................................................................................................................................................................................................................ 29 1 6 0.33 2 2 0 0 0 0 0 0
.........TTTCGTTCAAACATCTTTGAAT............................................................................................................................................................................................................................ 22 0 6 0.33 2 2 0 0 0 0 0 0
...........................................................................................................ATCATATGATATGTCGCCTTAAGA........................................................................................................................ 24 1 7 0.29 2 2 0 0 0 0 0 0
...........................................................................................................TTCATATGATATGTCGCCTTAAG......................................................................................................................... 23 0 7 0.29 2 1 1 0 0 0 0 0
............................................................................................................TCATATGATATGTCGCCTTAAG......................................................................................................................... 22 0 7 0.29 2 1 1 0 0 0 0 0
............................................................................................................TCATATGATATGTCGCCTTAAGA........................................................................................................................ 23 0 7 0.29 2 1 1 0 0 0 0 0
.............................................................................................................................TTAAGATCCGTTTTCAAATAATTGA..................................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................TGATATGTCGCCTTAAGATCCGTT.................................................................................................................. 24 0 4 0.25 1 0 1 0 0 0 0 0
...................ACATCTTTGAATTTTACCGGCATTTG.............................................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TTCCATACGGCAAACAAATCTGCAT........................................................ 25 0 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................TTCTCTGAATTCCATACGGCAAACAAATC............................................................. 29 0 4 0.25 1 0 1 0 0 0 0 0
...............TCAAACATCTTTGAATTTTACCGGCA.................................................................................................................................................................................................................. 26 0 4 0.25 1 0 1 0 0 0 0 0
....................................................................................................................................................................TCTGAATTCCATACGGCAAACAAATC............................................................. 26 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................TCCATACGGCAAACAAATCTGCATTT...................................................... 26 0 4 0.25 1 0 1 0 0 0 0 0
..............TTCAAACATCTTTGAATTTTACCGGCA.................................................................................................................................................................................................................. 27 0 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................................................................................TCCATACGGCAAACAAATCTGCATT....................................................... 25 0 4 0.25 1 0 1 0 0 0 0 0
......................................................................................................................TGTCGCCTTAAGATCCGTTTTC............................................................................................................... 22 0 4 0.25 1 0 0 0 0 0 1 0
......................................................................................................................................................................TGAATTCCATACGGCAAACAAATC............................................................. 24 0 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................................TATGTCGCCTTAAGATCCGTTTTCAAA............................................................................................................ 27 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................TAATTTCATATGATATGTCACCTTAAGA........................................................................................................................ 28 1 5 0.20 1 1 0 0 0 0 0 0
..........................................................................................................TTTCATATGATATGTCGCCTTAAGATT...................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0 0
..........................................................................TTTCTTGCTGGTATCTTCAAAAGCTT....................................................................................................................................................... 26 0 5 0.20 1 0 1 0 0 0 0 0
...........................................................................................................TTCATATGATATGTCGCCTTAAGATC...................................................................................................................... 26 0 5 0.20 1 0 1 0 0 0 0 0
.......................................................................................................TAATTTCATATGATATGTCACCTTAAG......................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0 0
..........................................................................................................TTTCATATGATATGTCGCCTTAAGTT....................................................................................................................... 26 1 5 0.20 1 0 0 1 0 0 0 0
.............................................................................................................CATATGATATGTCGCCTTAAGATC...................................................................................................................... 24 0 5 0.20 1 0 1 0 0 0 0 0
..........................TGAATTTTACCGGCATTTGTTCCTG........................................................................................................................................................................................................ 25 1 5 0.20 1 0 1 0 0 0 0 0
..................................................................TAACAAATTTTCTTGCTGGTATCATCA.............................................................................................................................................................. 27 1 6 0.17 1 0 1 0 0 0 0 0
..................................................................TAACAAATTTTCTTGCTGGTATCAT................................................................................................................................................................ 25 1 6 0.17 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................ATTAATGCAAATTCCAAGAATTG.......... 23 0 6 0.17 1 0 1 0 0 0 0 0
......TATTTTCGTTCAAACATCTTTGA.............................................................................................................................................................................................................................. 23 0 6 0.17 1 1 0 0 0 0 0 0
.........TTTCGTTCAAACATCTTTGAATT........................................................................................................................................................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0 0
......TATTTTCGTTCAAACATCTTTG............................................................................................................................................................................................................................... 22 0 6 0.17 1 1 0 0 0 0 0 0
......TATTTTCGTTCAAGCATCTTTGAATT........................................................................................................................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0
.................................................................................................................................................................TTCTCTGAATTCCATACGGCAAACA................................................................. 25 0 6 0.17 1 0 1 0 0 0 0 0
.......................................................................................................TAATTTCATATGATATGTCGTCTT............................................................................................................................ 24 1 6 0.17 1 0 1 0 0 0 0 0
..........................................................................................................TTTCATATGATATGTCACCTTAAGA........................................................................................................................ 25 1 7 0.14 1 1 0 0 0 0 0 0
..........................................................................................................TGTCATATGATATGTCGCCTTAAGA........................................................................................................................ 25 1 7 0.14 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TAATGCAAATTCTAAGAATTGTGG....... 24 1 7 0.14 1 1 0 0 0 0 0 0
.....................................................................................TATCTTGAAATGTTTTATTAATT............................................................................................................................................... 23 3 9 0.11 1 0 1 0 0 0 0 0
..........................................................................................................TTTCATATGATATGTCGCCTT............................................................................................................................ 21 0 9 0.11 1 0 1 0 0 0 0 0
...........................................................................TTCTTGCTGGTATCATCACG............................................................................................................................................................ 20 3 11 0.09 1 0 1 0 0 0 0 0
....................................CGCCATTTATTCCGGTAGG.................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................TCTTAATACAAGTTCCAAG............... 19 3 20 0.05 1 0 1 0 0 0 0 0
.........................................................................................................ATGCAATATGATATGTCGC............................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

AGGTGTATAAAAGCAAGTTTGTAGAAACTTAAAATGGCCGTAAACAAGGCCATACAACGGTTTTCCATTGTTTAAAAGAACGACCATAGAAGTTTTCGAAATAATTAAAGTATACTATACAGCGGAATTCTAGGCAAAAGTTTATTAACTATTAAAATAGGAAGAGACTTAAGGTATGCCGTTTGTTTAGACGTAAAAACTTAAACTCCAATACGAAATAATTACGTTTAAGGTTCTTAACACCATTTTTC
**********************************************************************..........................((((.((((.......((((....))))......))))......)))).********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 GSM444067
head
 GSM343916
embryo
 M059
embryo
..........................................................................................................................................................................................TTAGACGTAAAAACTTAAACTCCAATA...................................... 27 0 1 3.00 3 3 0 0 0 0 0
.......................................................................................AGAAGTTTTCGAAATAATTAAAGTAT.......................................................................................................................................... 26 0 6 1.33 8 0 8 0 0 0 0
.............................................................TTTCCATTGTTTAAAAGAACGACCATAG.................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................TGTTTAGAAGAACGACCATGGAAATT............................................................................................................................................................. 26 3 4 0.75 3 0 0 3 0 0 0
........................................................................................................................AGCGGAATTCAAGGCAAAGGTTTATT......................................................................................................... 26 2 3 0.67 2 0 2 0 0 0 0
..............................................................................................................TATACTATACAGCGGAATTCTAGGC.................................................................................................................... 25 0 4 0.50 2 0 2 0 0 0 0
.........................................................................................................................................................GACATAGGAAGAGACGTAAGGT............................................................................ 22 3 2 0.50 1 0 0 0 1 0 0
...............................................................................................................ATACTATACAGCGGAATTCTAGGCA................................................................................................................... 25 0 4 0.50 2 0 2 0 0 0 0
.................................................................................................................ACTATACAGCGGAATTCTAGGCA................................................................................................................... 23 0 4 0.50 2 2 0 0 0 0 0
.....................................................................................................................TACAGCGGAATTCAAGGCAAAAGT.............................................................................................................. 24 1 4 0.50 2 0 2 0 0 0 0
.........................................................................................................................GCGGAATTCTAGGCAAAAGTTTAT.......................................................................................................... 24 0 4 0.25 1 0 0 1 0 0 0
..................................................................................................................CTATACAGCGGAATTCAAGGCAAAAGT.............................................................................................................. 27 1 4 0.25 1 0 1 0 0 0 0
..................................................................................................................CTATACAGCGGAATTCTAGGCAAAAGT.............................................................................................................. 27 0 4 0.25 1 0 1 0 0 0 0
...............................................................................................................ATACTATACAGCGGAATTCTAGGCAA.................................................................................................................. 26 0 4 0.25 1 0 1 0 0 0 0
....................................................................................................................ATACAGCGGAATTCAAGGCAAAAGT.............................................................................................................. 25 1 4 0.25 1 0 1 0 0 0 0
................GTTTGTAGAAACTTAAAATGGCCGT.................................................................................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0
...............................................................................................................AAACTATACAGCGGAATTCTAGGCA................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
......................................................................................................................ACAGCGGAATTCAAGGCAAAAGT.............................................................................................................. 23 1 4 0.25 1 0 1 0 0 0 0
......................................CGTAAACAAGGCCATACAACGGT.............................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0 0
....................GTAGAAACTTAAAATGGCCGTAAAC.............................................................................................................................................................................................................. 25 0 5 0.20 1 0 1 0 0 0 0
.......................................GTAAACAAGGCCATACAACGGTTT............................................................................................................................................................................................ 24 0 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................................................GAGATAGGAAGAAACTTAAGGT............................................................................ 22 3 5 0.20 1 0 0 0 0 1 0
..........................................................................................AGTTTTCGAAATAATTAAAGTATACT....................................................................................................................................... 26 0 6 0.17 1 0 1 0 0 0 0
.....................................................................................ATAGAAGTTTTCGAAATAATTAAAGT............................................................................................................................................ 26 0 6 0.17 1 0 0 1 0 0 0
...................................................................................CCATAGAAGTTTTCGAAATTA................................................................................................................................................... 21 1 6 0.17 1 0 0 0 0 0 1
............................................................................................TTTTCGAAATAATTAAAGTATACT....................................................................................................................................... 24 0 6 0.17 1 0 1 0 0 0 0
...............................................................................................CCGACATAATTAAAGTAGACTAT..................................................................................................................................... 23 3 6 0.17 1 1 0 0 0 0 0
.................................................................................................GAAATAATTAAAGTAT.......................................................................................................................................... 16 0 7 0.14 1 0 1 0 0 0 0
............................................................................AGAACGACCATAGAAGTTTTCGAA....................................................................................................................................................... 24 0 7 0.14 1 1 0 0 0 0 0
............................................................................................TTTTAAAAATAATTAAAGTATA......................................................................................................................................... 22 2 10 0.10 1 1 0 0 0 0 0
......................................................................................TAAAAGTTTTCGAGATAAT.................................................................................................................................................. 19 2 11 0.09 1 1 0 0 0 0 0
...............................................................................................................AGACTATATAGCGCAATTCT........................................................................................................................ 20 3 19 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_85:6009-6259 + dps_2270 TCCACATATTTT--CGTTCAAACATCTTTGAATTTTACCGGCATTTGTTCCGGTATGTTGCCAAAAGGTAACAAATT--TTCTTG-CTGGTATCTTCAAAAGCTTTAT-TAATTTCATATGATATGTCGCCTTAAGATCCG------------------------------------TTTTCAAATAATTGATAATTTTAT------------------CCTT---CTCTGAATTCCATACGGCAAACAAATCT-GCAT-TTTTGAATTTGAGGTTATGCTTTATTAATGCAAATT-----------------CCAAGAATTGTGGTAAAAAG
droPer2 scaffold_1056:12539-12789 + TCCACATATTTT--CGTTCCAACATCTTTGAATTTTACCGGCATTTGTTTCGGTATGTTGCCAAACGATAACAAATT--TTCTTG-CTGGTATCTTCAAAAGCTTTAT-TAATTTCATATGATATGTCGCCTTAAGATCCG------------------------------------TTTTCAAATAATTGATAATTTTAT------------------CCTT---CTCTGAATTCCATACGGCAAACAAATCT-GCAT-TTTTGAATTTGAGGTTATGCTTTATTAATGCAAATT-----------------CCAAGAATTGTGGTAAAAAG
droWil2 scf2_1100000013005:367-490 + TAAGAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCAAATACTTAATTCCTA-AT------------------TCGT---TGTTTTCTGCTATATTAAAATCTCGTCC-ATAT-GCAGGAATATGAGATTATGTGCTAAAAAGTTAAATT-----------------GCAAAAAAAGTGGTTGCTTG
droMoj3 scaffold_4368:7024-7035 + TGCGTACAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:1465004-1465273 + TCGGAATGTCTC--CTTTGAAATAGCTTTGCATTCGATCTGCAATTCTTCCATTTTACCGTTAAACGGTAGCATATT--TTCTTA-CTGGCATCCTCAAAAGCTTGCA-TTTTTTTCTCAAATATTTCGCCACTA----------------GTTTTAGA--TTT------------A-----AAAAAATCAAGAATTGCTTTGTACTTTTGTTCTTGGGTCTT---CACAGACTTCCATATTTCAAACAATTCT-GCGT-TGTTGAATTTTAGGTTATGAGCTAAAAACGCAAATT-----------------CCAAAGAAAGTGGTTAAAAG
droBip1 scf7180000395399:5755-6016 - TCAGAATGTCTG--CTTTGAAATAA-------TTTTGCGTGCAACTTTTCCATTTTGTCGCCAAACGATAACAAAAT--TTCTTG-CCAGAATCTTCAAAATCTTGAA-TAATTTCCTCTGAAATATTGCTGTTA----------------TTTGCCGT--TTT---------A--------AAAAATTCGACAATAGCATTCTTCCTGGATACTTGGCTCTT---GATAGACTTCCACAGGGCAAACAACTCT-GAGT-TGCTGAATTTGAGGTTATGAACTAAAAATGCATATT-----------------CCAA-AAAAGTGGTTGAAAG
droKik1 scf7180000298618:3896-4179 + TCCGTATATTTC--CGTTCAAAAATTCTTGTGTTCGACCTGCAATTTTTAAATTTTGCCGCTAAACGGTAGCATATT--TTTGTA-CTACTTTTATTGAATGCTTTTA-TCAAATCATCCGAAACATCGCCAATT----------------TGTGAAGA--CCT------------T-----AAGAAATCATATATGGCATTCTCCTTGGCTTTTTTGGTCTT---ATTGAATTTCCAAACCGCAAAAATGTCT-GCAT-TCTTAAATTTTAGGTTATGTTCCATTC---CATGTTCATGTTTTCTATTTCAGCTTATATTTATGTTAACAAT
droFic1 scf7180000453339:27050-27088 + GGCACACAGTTTACCAGTAGAGCATTCAAGAAGTTTGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491145:3517-3766 + TTTTCATGATTC--TATTGGAAAAACTTCAAATTTGTTTTGCAATTGCTCCATAATTGATGTAGGCAGTAGCAAAAT--ATTCTATTTGCCGTCATTAAAGTCTTCTC-CCATTTGTCGAGG-TTA---T-----------AATAAGC--TTATGCGGT--TTT---------TA-------AAAATGTTTGTCTTTTTGG------------------TTGC---CTTTTCATTTCATATGAAAAACAACTCA-ATGC-TG-AAAGCTTAACGTTATGTACTTAAAAATTATATT-----------------TCAAA--AAATGGCAATAAG
droRho1 scf7180000779725:7189-7287 - AAATCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCTTAT------------------CT----------------TCATCGAAACTACTGCCAAAGC-TGCAAAATTTGAGGTTTTGTACTTAAAAATAAAATT-----------------TCGGAAAATGTGGCAATAAG
droBia1 scf7180000302422:22893-23096 - TAATAAA--------------------------------------------------------------------TG--ATTTTA-CTTCTGGCTTCTAAAAGTTTCTCATCGTGACTACTACAAGGTCCACATATAGCCG------------------------------------ATCTCATATAATTGAATATTGCAATTTCCTTGAAACTCTTCTTCGC---CTCTGACGTCCAGCTTTCAAACAGCGCG-CTGT-TTGCGAAAGTAACGTTGGTACCAAAAAAGTTAAATA-----------------TCAGAGAAAGTGCGCAAAAG
droTak1 scf7180000415401:992636-992883 - AAAAT-------------------TCTCAGAGTTTAGTTGCCATTTCTTTCATTTTTTGATACAGTTATAGCTTAATTTTTCTTT-TTACAACCTCCTAAGTCCGTTT-TTATT-GTCA-AATGG-TAGC-----------GATAAGTGTTTTTGCCTTACTTTAGAAGACATTT-C-----AAATGTATGTC--------------------------TATTGATTTTTTTCTTTCACAGTGCAAACAAAGGG-GCATTTGCAAAATTCGAGGTTATGATCTAAAAAATTTAATT-----------------TGTCCAAGAATCGAAAAAAG
droEug1 scf7180000409106:21270-21534 - AT-----GTTTG--CTTTCCTAAACTTTAGAACTATGCCTGCAACTTTTCCATTTTGTCGCCAAACGATAACAAAAC--TTCTTG-CCAGTGTCTTCAAAATCACGAA-AAATTTCCTCAGCAATAATGACA-------------------GTTGCCGT--TTT---------AAAA-----AAAAACTGGACAATAGCATTCACCTTGGATACTTGTCCCTT---CATATTCATCCACAGGGCAAACAACTCC-GAGT-TGTTGAATTTGAGGTTATGATCTAGAAACGCAAATT-----------------CTAAAAAAAGTGGTTGAAAG
dm3 chrXHet:74606-74675 + AAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCT-GCAT-TTGAACAAGTAGGGTAAGGACCTAAAAACTATAATT-----------------TCTCCGAAAATCGCAAAGAA
droSim2 2r:2641570-2641629 + GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TTGGGAACTCGAAGGTGCGACCTAAAAACGTTAATT-----------------ACAAAAAAAGTGCTCGAAAG
droSec2 scaffold_495:7252-7257 + TTCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:6834403-6834653 + TGTCCATGTTTA--CGGCGAAACTGATTGGCATTAAAGTGGGCTTTTTTCCACATTTTAGCCAAGCGATAGCAAATA--TCTCTA-GCTTTATCTTTAAAAATGGCA--TAATGC-------AATTCCTGTTCAACTTCT------GG--TCTTGAAGC--TTT---------A---------AAACCTTTGCAACTTTTC------------------CTTT---GACTTCTAGCTATATGCTGAACACATGT-ACAT-TTTGAAAAGTGAGGTTGCCACCTAAAAATTAAAATT-----------------TCTCCCAAAATCGGAAAAAG
droEre2 scaffold_4845:2503636-2503717 - CTCGAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAACATTTCC-GTAT-TTCAGAACCTCATGTTGCGACTTAAAAATGTTAATT-----------------AATACGAAAGGGCGCAAAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCCACATATTTT--CGTTCAAACATCTTTGAATTTTACCGGCATTTGTTCCGGTATGTTGCCAAAAGGTAACAAATT--TTCTTG-CTGGTATCTTCAAAAGCTTTAT-TAATTTCATATGATATGTCGCCTTAAGATCCG------------------------------------TTTTCAAATAATTGATAATTTTAT------------------CCTT---CTCTGAATTCCATACGGCAAACAAATCT-GCAT-TTTTGAATTTGAGGTTATGCTTTATTAATGCAAATT-----------------CCAAGAATTGTGGTAAAAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................TTTCATATGATATGTCGCCTTAAGATC..................................................................................................................................................................................................2754.602304000001900
......TATTTT--CGTTCAAACATCTTTGAATT...........................................................................................................................................................................................................................................................................................................2664.502700000002700
................................................................................................................TTTCATATGATATGTCGCCTTAAGA....................................................................................................................................................................................................2574.002805001002110
.............................................................................................................TAATTTCATATGATATGTCGCCT.........................................................................................................................................................................................................2363.672201211000800
.............................................................................................................................................................................................................................................................................................TAATGCAAATT-----------------CCAAGAATTGTGG.......2462.83170900000800
................................................................................................................TTTCATATGATATGTCGCCTTAAG.....................................................................................................................................................................................................2472.141500000001500
......................................................................................................................................................................................................TAT------------------CCTT---CTCTGAATTCCATACGGC.........................................................................................2512.0020100000010
................................................................................................................TTTCATATGATATGTCGCCTTAAGAT...................................................................................................................................................................................................2651.6080100000700
......TATTTT--CGTTCAAACATCTTTGAATTT..........................................................................................................................................................................................................................................................................................................2761.3380000000800
......TATTTT--CGTTCAAACATCTTTGAAT............................................................................................................................................................................................................................................................................................................2561.3380000000800
..............................................................................................................................................................................................................................T---CTCTGAATTCCATACGGCAAACAAATC................................................................................2841.2550000000500
..................................................................................................................TCATATGATATGTCGCCTTAAGATC..................................................................................................................................................................................................2551.2060300000300
...................................................................................................................................................................................................TTTTAT------------------CCTT---CTCTGAATTCCATACGGC.........................................................................................2811.0010000000010
.............................................................................................................................................................................................TGATAATTTTAT------------------CCTT---CTCTGAATTCC................................................................................................2711.0010010000000
.......................................................................................................................................................................................................AT------------------CCTT---CTCTGAATTCCATACGGCAAACA....................................................................................2911.0010100000000
......TATTTT--CGTTCAAACATCTTTGAA.............................................................................................................................................................................................................................................................................................................2460.6740000000400
............................................................................................................................................................................................................................................................................................TTAATGCAAATT-----------------CCAAGAATTGTGG.......2560.6740000000400
.............................................................................................................TAATTTCATATGATATGTCGCCTTAA......................................................................................................................................................................................................2650.6030100000200
..................................................................................................................TCATATGATATGTCGCCTTAAGATCC.................................................................................................................................................................................................2650.6030300000000
..................................................................................................................TCATATGATATGTCGCCTTAAGATCCG------------------------------------T...........................................................................................................................................................2840.5020200000000
................................................................................................................TTTCATATGATATGTCGCCTTAAGT....................................................................................................................................................................................................2580.5040100000300
............................................................................T--TTCTTG-CTGGTATCTTCAAAAGC......................................................................................................................................................................................................................................2450.4020200000000
.............................................................................................................TAATTTCATATGATATGTCGCCTTAAGA....................................................................................................................................................................................................2850.4020200000000
............................................................................T--TTCTTG-CTGGTATCTTCAAAAGCT.....................................................................................................................................................................................................................................2550.4020100100000
.....................................................................................................................................................................................................................................................................................................ATT-----------------CCAAGAATTGTGGTAAAAAG2330.3310000000100
.........TTT--CGTTCAAACATCTTTGAAT............................................................................................................................................................................................................................................................................................................2260.3320000000200
.................................................................................................................TTCATATGATATGTCGCCTTAAG.....................................................................................................................................................................................................2370.2920100000100
..................................................................................................................TCATATGATATGTCGCCTTAAG.....................................................................................................................................................................................................2270.2920100000100
..................................................................................................................TCATATGATATGTCGCCTTAAGA....................................................................................................................................................................................................2370.2920100000100
...................................................................................................................................TTAAGATCCG------------------------------------TTTTCAAATAATTGA.............................................................................................................................................2540.2510100000000
.......................................................................................................................TGATATGTCGCCTTAAGATCCG------------------------------------TT..........................................................................................................................................................2440.2510100000000
.....................ACATCTTTGAATTTTACCGGCATTTG..............................................................................................................................................................................................................................................................................................2640.2510000000100
.........................................................................................................................................................................................................................................TTCCATACGGCAAACAAATCT-GCAT-.........................................................................2540.2510100000000
.............................................................................................................................................................................................................................TT---CTCTGAATTCCATACGGCAAACAAATC................................................................................2940.2510100000000
.................TCAAACATCTTTGAATTTTACCGGCA..................................................................................................................................................................................................................................................................................................2640.2510100000000
...................................................................................................................................................................................................................................TCTGAATTCCATACGGCAAACAAATC................................................................................2640.2510000000100
..........................................................................................................................................................................................................................................TCCATACGGCAAACAAATCT-GCAT-TT.......................................................................2640.2510100000000
................TTCAAACATCTTTGAATTTTACCGGCA..................................................................................................................................................................................................................................................................................................2740.2510100000000
..........................................................................................................................................................................................................................................TCCATACGGCAAACAAATCT-GCAT-T........................................................................2540.2510100000000
............................................................................................................................TGTCGCCTTAAGATCCG------------------------------------TTTTC.......................................................................................................................................................2240.2510000001000
.....................................................................................................................................................................................................................................TGAATTCCATACGGCAAACAAATC................................................................................2440.2510000000100
..........................................................................................................................TATGTCGCCTTAAGATCCG------------------------------------TTTTCAAA....................................................................................................................................................2740.2510000000100
................................................................................................................TTTCATATGATATGTCGCCTTAAGATT..................................................................................................................................................................................................2750.2010000000100
............................................................................T--TTCTTG-CTGGTATCTTCAAAAGCTT....................................................................................................................................................................................................................................2650.2010100000000
.................................................................................................................TTCATATGATATGTCGCCTTAAGATC..................................................................................................................................................................................................2650.2010100000000
...................................................................................................................CATATGATATGTCGCCTTAAGATC..................................................................................................................................................................................................2450.2010100000000
...........................................................................................................................................................................................................................................................................................ATTAATGCAAATT-----------------CCAAGAATTG..........2360.1710100000000
......TATTTT--CGTTCAAACATCTTTGA..............................................................................................................................................................................................................................................................................................................2360.1710000000100
.........TTT--CGTTCAAACATCTTTGAATT...........................................................................................................................................................................................................................................................................................................2360.1710000000100
......TATTTT--CGTTCAAACATCTTTG...............................................................................................................................................................................................................................................................................................................2260.1710000000100
.............................................................................................................................................................................................................................TT---CTCTGAATTCCATACGGCAAACA....................................................................................2560.1710100000000
................................................................................................................TTTCATATGATATGTCGCCTT........................................................................................................................................................................................................2190.1110100000000
droPer2
TCCACATATTTT--CGTTCCAACATCTTTGAATTTTACCGGCATTTGTTTCGGTATGTTGCCAAACGATAACAAATT--TTCTTG-CTGGTATCTTCAAAAGCTTTAT-TAATTTCATATGATATGTCGCCTTAAGATCCG------------------------------------TTTTCAAATAATTGATAATTTTAT------------------CCTT---CTCTGAATTCCATACGGCAAACAAATCT-GCAT-TTTTGAATTTGAGGTTATGCTTTATTAATGCAAATT-----------------CCAAGAATTGTGGTAAAAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................TCT-GCAT-TTTTGAATTTGAGG...........................................................2120.501010000
............................................................................T--TTCTTG-CTGGTATCTTCAAAAGCTT....................................................................................................................................................................................................................................26200.357060001
.....................................................................................................................................................................................................TTAT------------------CCTT---CTCTGAATTCCATACGGC.........................................................................................2630.331010000
......................................................................................................................................................................................................TAT------------------CCTT---CTCTGAATTCCATACGGC.........................................................................................2530.331010000
...................CAACATCTTTGAATTTTACCGGCA..................................................................................................................................................................................................................................................................................................24110.273030000
...................CAACATCTTTGAATTTTACCGGCATT................................................................................................................................................................................................................................................................................................26110.273030000
...................CAACATCTTTGAATTTTACCGGCAT.................................................................................................................................................................................................................................................................................................25110.182020000
......................................................................................................................................................................................................TAT------------------CCTT---CTCTGAATTCCATACG...........................................................................................2360.171010000
................................................................................................................TTTCATATGATATGTCGCCTTAAGAT...................................................................................................................................................................................................26200.153020001
............................................................................T--TTCTTG-CTGGTATCTTCAAAAGCT.....................................................................................................................................................................................................................................25200.153030000
................................................................................................................TTTCATATGATATGTCGCCTTAAG.....................................................................................................................................................................................................24200.153030000
..................................................................................................................TCATATGATATGTCGCCTTAAGA....................................................................................................................................................................................................23200.102020000
...................CAACATCTTTGAATTTTACCGGCATTTG..............................................................................................................................................................................................................................................................................................28110.091010000
....................................................................................................................................TAAGATCCG------------------------------------TTTTCAAATAATTGATAAT.........................................................................................................................................28200.051010000
........................................................................................................TTAT-TAATTTCATATGATATGTCGCCT.........................................................................................................................................................................................................27200.051100000
............................................................................................................................................................................................................................................................................................TTAATGCAAATT-----------------CCAAGAATTGTGG.......25200.051010000
........................................................................AAATT--TTCTTG-CTGGTATCT..............................................................................................................................................................................................................................................20200.051010000
.........................................................................................................TAT-TAATTTCATATGATATGTCGCCT.........................................................................................................................................................................................................26200.051010000
.................................................................................................................TTCATATGATATGTCGCCTTAAGA....................................................................................................................................................................................................24200.051010000
..............................................................................................................AATTTCATATGATATGTCGCC..........................................................................................................................................................................................................21200.051100000
............................................................................T--TTCTTG-CTGGTATCTTCAAAAG.......................................................................................................................................................................................................................................23200.051010000
................................................................................................................TTTCATATGATATGTCGCCTTAAGA....................................................................................................................................................................................................25200.051000001
..................................................................................................................TCATATGATATGTCGCCTTAAGATC..................................................................................................................................................................................................25200.051010000
.............................................................................................................................................................................................................................TT---CTCTGAATTCCATACGGCA........................................................................................21200.051010000
..................................................................................................................TCATATGATATGTCGCCTTAAG.....................................................................................................................................................................................................22200.051010000
................................................................................................................TTTCATATGATATGTCGCCTTAAGATC..................................................................................................................................................................................................27200.051010000
droWil2
TAAGAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCAAATACTTAATTCCTA-AT------------------TCGT---TGTTTTCTGCTATATTAAAATCTCGTCC-ATAT-GCAGGAATATGAGATTATGTGCTAAAAAGTTAAATT-----------------GCAAAAAAAGTGGTTGCTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................TAAAATCTCGTCC-ATAT-GCAGGAATA................................................................26200.20402020
.................................................................................................................................................................................................................................................TAAAATCTCGTCC-ATAT-GCAGGAAT.................................................................25200.10201010
............................................................................................................................................................................................................................................TATATTAAAATCTCGTCC-ATAT-GCAG.....................................................................26200.10202000
.................................................................................................................................................................................................TCCTA-AT------------------TCGT---TGTTTTCTGCTATAT............................................................................................26140.07101000
..................................................................................................................................................................................................................................................................................................TAAATT-----------------GCAAAAAAAGTGGTTGCTTG26160.06101000
.......TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCAAATACTTAATTCCTA-AT------------------TCG...............................................................................................................28190.05101000
.......TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCAAATACTTAATTCCTA-A.....................................................................................................................................24200.05101000
............................................................................................................................................................................................................................................................................................AAAAGTTAAATT-----------------GCAAAAAAAGTGGT......26200.05100010
.......................................................................................................................................................................................................................................................CTCGTCC-ATAT-GCAGGAATATGA.............................................................23200.05101000
droMoj3
TGCGTACAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droAna3
TCGGAATGTCTC--CTTTGAAATAGCTTTGCATTCGATCTGCAATTCTTCCATTTTACCGTTAAACGGTAGCATATT--TTCTTA-CTGGCATCCTCAAAAGCTTGCA-TTTTTTTCTCAAATATTTCGCCACTA----------------GTTTTAGA--TTT------------A-----AAAAAATCAAGAATTGCTTTGTACTTTTGTTCTTGGGTCTT---CACAGACTTCCATATTTCAAACAATTCT-GCGT-TGTTGAATTTTAGGTTATGAGCTAAAAACGCAAATT-----------------CCAAAGAAAGTGGTTAAAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCTTG...................................................................................................................................................................................................................................26103.60363141000
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCTTGCA-................................................................................................................................................................................................................................28103.00302460000
..........TC--CTTTGAAATAGCTTTGCATTCGATC......................................................................................................................................................................................................................................................................................................2792.00188100000
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCTTGC..................................................................................................................................................................................................................................27101.70175120000
.........................................................................TATT--TTCTTA-CTGGCATCCTCAAAAGCT.....................................................................................................................................................................................................................................28101.5015690000
...........................................................................................................................................................................................................TACTTTTGTTCTTGGGTCTT---CACAGAC....................................................................................................27101.2012831000
............................................TTCTTCCATTTTACCGTTAAACGGTAGCA....................................................................................................................................................................................................................................................................2991.009090000
.........................................................................TATT--TTCTTA-CTGGCATCCTCAAAAGC......................................................................................................................................................................................................................................27100.909540000
............................................................................T--TTCTTA-CTGGCATCCTCAAAAGCT.....................................................................................................................................................................................................................................25100.909180000
................................................................................TCTTA-CTGGCATCCTCAAAAGCTTGCA-................................................................................................................................................................................................................................27100.909900000
.............................................TCTTCCATTTTACCGTTAAACGGTAGCA....................................................................................................................................................................................................................................................................2890.898080000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCTT---CACA.......................................................................................................27110.829810000
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCT.....................................................................................................................................................................................................................................24100.808260000
......TGTCTC--CTTTGAAATAGCTTTGCATTC..........................................................................................................................................................................................................................................................................................................2780.756330000
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCTT....................................................................................................................................................................................................................................25100.707340000
.................TGAAATAGCTTTGCATTCGATCTGC...................................................................................................................................................................................................................................................................................................2580.635131000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCTT---CAC........................................................................................................26110.556600000
...............TTTGAAATAGCTTTGCATTCGATCTGC...................................................................................................................................................................................................................................................................................................2780.504130000
......TGTCTC--CTTTGAAATAGCTTTGCA.............................................................................................................................................................................................................................................................................................................2480.504120010
......TGTCTC--CTTTGAAATAGCTTTGCATTCGA........................................................................................................................................................................................................................................................................................................2980.504310000
....................................................................TAGCATATT--TTCTTA-CTGGCATCCTC............................................................................................................................................................................................................................................26100.505050000
................................TTCGATCTGCAATTCTTCCATTTTACC..................................................................................................................................................................................................................................................................................2780.504130000
.........................................................................TATT--TTCTTA-CTGGCATCCTCAAAAGCC.....................................................................................................................................................................................................................................28100.505050000
..........................................................................................................................................................................................................................................................................................TAAAAACGCAAATT-----------------CCAAAGAAAGTGGT......28120.506040020
...............................................................................................................TTTTTCTCAAATATTTCGCCACTA----------------GTT...................................................................................................................................................................................2790.444130000
.............................................TCTTCCATTTTACCGTTAAACGGTAGC.....................................................................................................................................................................................................................................................................2790.444040000
..........................................................................................................................................................................................................GTACTTTTGTTCTTGGGTCTT---CACAG......................................................................................................26100.404310000
.........................................................................................................................................................................................................TGTACTTTTGTTCTTGGGTCTT---CACAG......................................................................................................27100.404400000
..........................................................................................................................................................................................................GTACTTTTGTTCTTGGGTCTT---CACAGAC....................................................................................................28100.404300001
...........................................................................................................................................................................................................TACTTTTGTTCTTGGGTCTT---CACAGACT...................................................................................................28100.404400000
.................TGAAATAGCTTTGCATTCGATCTGCAA.................................................................................................................................................................................................................................................................................................2780.383300000
......TGTCTC--CTTTGAAATAGCTTTGCATT...........................................................................................................................................................................................................................................................................................................2680.383210000
.........................................................................................................................................................................................................TGTACTTTTGTTCTTGGGTCTT---CACA.......................................................................................................26110.364211000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCTT---C..........................................................................................................24110.364130000
........TCTC--CTTTGAAATAGCTTTGCATTCGA........................................................................................................................................................................................................................................................................................................2790.333300000
...........................................................................TT--TTCTTA-CTGGCATCCTCAAAAGCT.....................................................................................................................................................................................................................................26100.303120000
..............................................................................................................................................................................................................TTTTGTTCTTGGGTCTT---CACAGACT...................................................................................................25100.303210000
............................................................................T--TTCTTA-CTGGCATCCTCAAAAGCTTG...................................................................................................................................................................................................................................27100.303210000
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCTTGCA-T...............................................................................................................................................................................................................................29100.303120000
...........................................................................................................................................................................................................TACTTTTGTTCTTGGGTCTT---CACAGA.....................................................................................................26100.303210000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCTT---CA.........................................................................................................25110.273201000
..........................................................................................................................................................................................................GTACTTTTGTTCTTGGGTCTT---CACA.......................................................................................................25110.273300000
..........................................................................................................................................................................................................................................................................................TAAAAACGCAAATT-----------------CCAAAGAAAGTGGC......28120.253030000
.................TGAAATAGCTTTGCATTCGATCTGCA..................................................................................................................................................................................................................................................................................................2680.252200000
..............................CATTCGATCTGCAATTCTTCCATTT......................................................................................................................................................................................................................................................................................2580.252200000
............................................................................................................................................................................................................................................................................................AAAACGCAAATT-----------------CCAAAGAAAGTGGT......26120.253030000
...................................................................................................................TCTCAAATATTTCGCCACTA----------------GTTTTA................................................................................................................................................................................2690.222200000
..............................................................................................................TTTTTTCTCAAATATTTCGCCACTA----------------GTTT..................................................................................................................................................................................2990.222020000
...............................................TTCCATTTTACCGTTAAACGGTAGCA....................................................................................................................................................................................................................................................................2690.222020000
.........CTC--CTTTGAAATAGCTTTGCATTCGATC......................................................................................................................................................................................................................................................................................................2890.222200000
............................................................................T--TTCTTA-CTGGCATCCTCAAAAGCTT....................................................................................................................................................................................................................................26100.202020000
................................................................................TCTTA-CTGGCATCCTCAAAAGCTTG...................................................................................................................................................................................................................................25100.202200000
................................................................................TCTTA-CTGGCATCCTCAAAAGCTTGCA-TT..............................................................................................................................................................................................................................29100.202020000
.........................................................................................................................................................................................................TGTACTTTTGTTCTTGGGTCTT---CACAGAC....................................................................................................29100.202110000
...............................................................................................................................................................................................................TTTGTTCTTGGGTCTT---CACAGACT...................................................................................................24100.202020000
...............................................................................TTCTTA-CTGGCATCCTCAAAA........................................................................................................................................................................................................................................21100.202020000
..........................................................................................................................................................................................................GTACTTTTGTTCTTGGGTCTT---CACAGACT...................................................................................................29100.202020000
..................................................................GGTAGCATATT--TTCTTA-CTGGCATCC..............................................................................................................................................................................................................................................26100.202020000
....................................................................TAGCATATT--TTCTTA-CTGGCATC...............................................................................................................................................................................................................................................23100.202020000
...................................................................................TA-CTGGCATCCTCAAAAGCTTGCA-TT..............................................................................................................................................................................................................................26100.202110000
.......................................................................................................................................................................................................TTTGTACTTTTGTTCTTGGGTCTT---CA.........................................................................................................26110.182200000
....................................................................................................................................................................................................TGCTTTGTACTTTTGTTCTTGGGTCTT---...........................................................................................................27110.182200000
...........................................................................................................................................................................................................TACTTTTGTTCTTGGGTCTT---CACA.......................................................................................................24110.182200000
..........................................................................................................................................................................................................GTACTTTTGTTCTTGGGTCTT---CA.........................................................................................................23110.182200000
.......................................TGCAATTCTTCCATTTTACCGTTAAACG..........................................................................................................................................................................................................................................................................2880.131100000
......TGTCTC--CTTTGAAATAGCTTTGCAT............................................................................................................................................................................................................................................................................................................2580.131010000
............................TGCATTCGATCTGCAATTCTTCCATTT......................................................................................................................................................................................................................................................................................2780.131100000
.................................TCGATCTGCAATTCTTCCATTTTACCG.................................................................................................................................................................................................................................................................................2780.131100000
.....................ATAGCTTTGCATTCGATCTGC...................................................................................................................................................................................................................................................................................................2180.131010000
..................GAAATAGCTTTGCATTCGATCTGCAA.................................................................................................................................................................................................................................................................................................2680.131100000
.......................................TGCAATTCTTCCATTTTACCGTTAAACGG.........................................................................................................................................................................................................................................................................2980.131100000
.....................................TCTGCAATTCTTCCATTTTACCGTT...............................................................................................................................................................................................................................................................................2580.131100000
......................TAGCTTTGCATTCGATCTGCAATT...............................................................................................................................................................................................................................................................................................2480.131001000
...............TTTGAAATAGCTTTGCATTCGATCTGCAA.................................................................................................................................................................................................................................................................................................2980.131100000
......TGTCTC--CTTTGAAATAGCTTTGCATTCG.........................................................................................................................................................................................................................................................................................................2880.131100000
.....................................TCTGCAATTCTTCCATTTTACCGTTA..............................................................................................................................................................................................................................................................................2680.131100000
.................................TCGATCTGCAATTCTTCCATTTTACC..................................................................................................................................................................................................................................................................................2680.131010000
...............TTTGAAATAGCTTTGCATTCGATCTGCAG.................................................................................................................................................................................................................................................................................................2980.131100000
.................TGAAATAGCTTTGCATTCGATCTGCAAT................................................................................................................................................................................................................................................................................................2880.131001000
..................................CGATCTGCAATTCTTCCATTTTACC..................................................................................................................................................................................................................................................................................2580.131010000
...............................ATTCGATCTGCAATTCTTCCATTTTACC..................................................................................................................................................................................................................................................................................2880.131010000
...................AAATAGCTTTGCATTCGATCTGCAATT...............................................................................................................................................................................................................................................................................................2780.131000001
..............................CATTCGATCTGCAATTCTTCCAT........................................................................................................................................................................................................................................................................................2380.131100000
.....................................TCTGCAATTCTTCCATTTTACCGTTAAAC...........................................................................................................................................................................................................................................................................2980.131010000
...............................................TTCCATTTTACCGTTAAACGGTAGC.....................................................................................................................................................................................................................................................................2590.111010000
...............................................................................................................TTTTTCTCAAATATTTCGCCACTA----------------GT....................................................................................................................................................................................2690.111010000
...............................................TTCCATTTTACCGTTAAACGGTAGCAC...................................................................................................................................................................................................................................................................2790.111010000
..............................................................................................................TTTTTTCTCAAATATTTCGCCACTA----------------GT....................................................................................................................................................................................2790.111100000
.......................................................................................................TTGCA-TTTTTTTCTCAAATATTTCGCC..........................................................................................................................................................................................................2790.111010000
..........TC--CTTTGAAATAGCTTTGCATTCGAT.......................................................................................................................................................................................................................................................................................................2690.111100000
........TCTC--CTTTGAAATAGCTTTGCATTCGATC......................................................................................................................................................................................................................................................................................................2990.111010000
.......................................................................................................TTGCA-TTTTTTTCTCAAATATTTCGCCAC........................................................................................................................................................................................................2990.111010000
...............TTTGAAATAGCTTTGCATTCGATC......................................................................................................................................................................................................................................................................................................2490.111000010
...................................................................................................................TCTCAAATATTTCGCCACTA----------------GTTT..................................................................................................................................................................................2490.111010000
.......................................................................................................................AAATATTTCGCCACTA----------------GTTTT.................................................................................................................................................................................2190.111010000
...............................................................................................................TTTTTCTCAAATATTTCGCCACTA----------------GC....................................................................................................................................................................................2690.111010000
................................................................................................................TTTTCTCAAATATTTCGCCACTA----------------GT....................................................................................................................................................................................2590.111010000
...................................................................................................................TCTCAAATATTTCGCCACTA----------------GTTTTAGA--............................................................................................................................................................................2890.111010000
.......GTCTC--CTTTGAAATAGCTTTGC..............................................................................................................................................................................................................................................................................................................2290.111100000
................................................................................................................TTTTCTCAAATATTTCGCCACTA----------------GTC...................................................................................................................................................................................2690.111010000
.......GTCTC--CTTTGAAATAGCTTTGCATTCGA........................................................................................................................................................................................................................................................................................................2890.111100000
...........C--CTTTGAAATAGCTTTGCATTCGA........................................................................................................................................................................................................................................................................................................2490.111100000
................................................TCCATTTTACCGTTAAACGGTAGC.....................................................................................................................................................................................................................................................................2490.111010000
........TCTC--CTTTGAAATAGCTTTGCATT...........................................................................................................................................................................................................................................................................................................2490.111100000
............................................TTCTTCCATTTTACCGTTAAACGGTAGC.....................................................................................................................................................................................................................................................................2890.111010000
.....................................................................................................................TCAAATATTTCGCCACTA----------------GTTTTAGA--............................................................................................................................................................................2690.111010000
................................................TCCATTTTACCGTTAAACGGTAGCA....................................................................................................................................................................................................................................................................2590.111010000
...............TTTGAAATAGCTTTGCATT...........................................................................................................................................................................................................................................................................................................1990.111010000
.......GTCTC--CTTTGAAATAGCTTTGCA.............................................................................................................................................................................................................................................................................................................2390.111100000
................................................................................................................TTTTCTCAAATATTTCGCCACTA----------------GTTT..................................................................................................................................................................................2790.111100000
.........CTC--CTTTGAAATAGCTTTGCATTCGA........................................................................................................................................................................................................................................................................................................2690.111100000
.....................................................................................................................TCAAATATTTCGCCACTA----------------GTTTTAGA--T...........................................................................................................................................................................2790.111010000
........TCTC--CTTTGAAATAGCTTTGCA.............................................................................................................................................................................................................................................................................................................2290.111100000
..........TC--CTTTGAAATAGCTTTGCATTCGA........................................................................................................................................................................................................................................................................................................2590.111010000
.................TGAAATAGCTTTGCATTCGATCTG....................................................................................................................................................................................................................................................................................................2490.111100000
.......GTCTC--CTTTGAAATAGCTTTGCATTCG.........................................................................................................................................................................................................................................................................................................2790.111100000
...............TTTGAAATAGCTTTGCATTCGA........................................................................................................................................................................................................................................................................................................2290.111010000
.....................................................................................................................TCAAATATTTCGCCACTA----------------GTTTTAGA--TT..........................................................................................................................................................................2890.111000001
...............................................................................................................TTTTTCTCAAATATTTCGCCACTA----------------GTTT..................................................................................................................................................................................2890.111010000
.........................................................................TATT--TTCTTA-CTGGCATCCTCAAAAGCTT....................................................................................................................................................................................................................................29100.101010000
.................................................................................CTTA-CTGGCATCCTCAAAAG.......................................................................................................................................................................................................................................20100.101100000
.............................................................................................................................................................................................................CTTTTGTTCTTGGGTCTT---CACAGAC....................................................................................................25100.101100000
.......................................................................................TGGCATCCTCAAAAGCTTGCA-TTT.............................................................................................................................................................................................................................24100.101010000
....................................................................TAGCATATT--TTCTTA-CTGGCA.................................................................................................................................................................................................................................................21100.101100000
............................................................................T--TTCTTA-CTGGCATCCTCAAAAGC......................................................................................................................................................................................................................................24100.101010000
.................................................................................................................................................................................................................TGTTCTTGGGTCTT---CACAGACTTCC................................................................................................25100.101100000
............................................................................T--TTCTTA-CTGGCATCCTCAAAAGCTTGC..................................................................................................................................................................................................................................28100.101100000
.......................................................................CATATT--TTCTTA-CTGGCATCCT.............................................................................................................................................................................................................................................22100.101100000
.........................................................................TATT--TTCTTA-CTGGCATCCTCAAAAG.......................................................................................................................................................................................................................................26100.101100000
..............................................................................................................................................................................................................................T---CACAGACTTCCATATTTCAAACAATTC................................................................................28100.101010000
...........................................................................................................................................................TAGA--TTT------------A-----AAAAAATCAAGAATTGCTT....................................................................................................................................27100.101000010
.................................................................CGGTAGCATATT--TTCTTA-CTGGCATC...............................................................................................................................................................................................................................................26100.101010000
............................................................................T--TTCTTA-CTGGCATCCTCAAAAGCTTGT..................................................................................................................................................................................................................................28100.101010000
................................................................................................................................................................................................................TTGTTCTTGGGTCTT---CACAGACTTCCA...............................................................................................27100.101100000
............................................................................T--TTCTTA-CTGGCATCCTCAAAAGCC.....................................................................................................................................................................................................................................25100.101010000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCTT---CACAGA.....................................................................................................29100.101100000
...........................................................................................................................................................................................................TACTTTTGTTCTTGGGTCTT---CACAGACC...................................................................................................28100.101010000
.............................................................TAAACGGTAGCATATT--TTCTTA-CTGG...................................................................................................................................................................................................................................................26100.101010000
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCTC....................................................................................................................................................................................................................................25100.101010000
................................................................................TCTTA-CTGGCATCCTCAAAAGCTTGCA-T...............................................................................................................................................................................................................................28100.101010000
................................................................................TCTTA-CTGGCATCCTCAAAAGCTTGC..................................................................................................................................................................................................................................26100.101010000
..............................................................................................................................................................................................................................T---CACAGACTTCCATATTTCAAACAAT..................................................................................26100.101100000
...................................................................................TA-CTGGCATCCTCAAAAGCTTGCA-TTT.............................................................................................................................................................................................................................27100.101100000
...............................................................................TTCTTA-CTGGCATCCTCAAAAGCTTGCA-C...............................................................................................................................................................................................................................29100.101010000
...........................................................................................................................................................................................................TACTTTTGTTCTTGGGTCTT---CACAG......................................................................................................25100.101010000
....................................................................TAGCATATT--TTCTTA-CTGGCATCCT.............................................................................................................................................................................................................................................25100.101100000
.........................................................................................................................................................................................................TGTACTTTTGTTCTTGGGTCTT---CA.........................................................................................................24110.091100000
......................................................................................................................................................................................................CTTTGTACTTTTGTTCTTGGGTCTT---...........................................................................................................25110.091100000
...................................................................................................................................................................................................TTGCTTTGTACTTTTGTTCTTGGGT.................................................................................................................25110.091010000
....................................................................................................................................................................................................TGCTTTGTACTTTTGTTCTTGGGTCT...............................................................................................................26110.091010000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCT...............................................................................................................22110.091010000
..........................................................................................................................................................................................AATCAAGAATTGCTTTGTACTTTTGTTC.......................................................................................................................28110.091100000
.............................................................................................................................................................................................CAAGAATTGCTTTGTACTTTTGTTCC......................................................................................................................26110.091010000
....................................................................................................................................................................................................TGCTTTGTACTTTTGTTCTTGGGT.................................................................................................................24110.091010000
.................................................................................................................................................................TTT------------A-----AAAAAATCAAGAATTGCTTTGT.................................................................................................................................26110.091000010
............................................................................................................................................................................................................ACTTTTGTTCTTGGGTCTT---CA.........................................................................................................21110.091100000
...................................................................................................................................................................................................TTGCTTTGTACTTTTGTTCTTGGGTC................................................................................................................26110.091010000
..............................................................................................................................................................................................................................................................................TAGGTTATGAGCTAAAAACGCAAATT-----------------C...................27110.091000010
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTC................................................................................................................21110.091001000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCC...............................................................................................................22110.091010000
.......................................................................................................................................................................................................TTTGTACTTTTGTTCTTGGGTCT...............................................................................................................23110.091010000
..........................................................................................................................................................................................AATCAAGAATTGCTTTGTACT..............................................................................................................................21110.091010000
..............................................................................................................................................................................................................................................................................TAGGTTATGAGCTAAAAACGCAAATT-----------------G...................27110.091000010
................................................................................................................................................................................................GAATTGCTTTGTACTTTTGTTCTTGG...................................................................................................................26110.091100000
...................................................................................................................................................................................................TTGCTTTGTACTTTTGTTCTTGGGC.................................................................................................................25110.091010000
........................................................................................................................................................................................................TTGTACTTTTGTTCTTGGGTCTT---...........................................................................................................23110.091010000
..............................................................................................................................................................................................................TTTTGTTCTTGGGTCTT---CACA.......................................................................................................21110.091010000
..........................................................................................................................................................................................................................................................................................TAAAAACGCAAATT-----------------CCAAAGAAAGT.........25120.081010000
..................................................................................................................................................................................................................................................................................TTATGAGCTAAAAACGCAAATT-----------------CCAA................26120.081100000
....................................................................................................................................................................................................................................................................................ATGAGCTAAAAACGCAAATT-----------------CCAAAG..............26120.081100000
..................................................................................................................................................................................................................................................................................TTATGAGCTAAAAACGCAAATT-----------------CCAAAGA.............29120.081100000
.......................................................................................................................................................................................................................................................................................AGCTAAAAACGCAAATT-----------------CCAAAGAAAGT.........28120.081010000
droBip1
TCAGAATGTCTG--CTTTGAAATAA-------TTTTGCGTGCAACTTTTCCATTTTGTCGCCAAACGATAACAAAAT--TTCTTG-CCAGAATCTTCAAAATCTTGAA-TAATTTCCTCTGAAATATTGCTGTTA----------------TTTGCCGT--TTT---------A--------AAAAATTCGACAATAGCATTCTTCCTGGATACTTGGCTCTT---GATAGACTTCCACAGGGCAAACAACTCT-GAGT-TGCTGAATTTGAGGTTATGAACTAAAAATGCATATT-----------------CCAA-AAAAGTGGTTGAAAGSizeHit CountTotal NormTotal
No Reads
droKik1
TCCGTATATTTC--CGTTCAAAAATTCTTGTGTTCGACCTGCAATTTTTAAATTTTGCCGCTAAACGGTAGCATATT--TTTGTA-CTACTTTTATTGAATGCTTTTA-TCAAATCATCCGAAACATCGCCAATT----------------TGTGAAGA--CCT------------T-----AAGAAATCATATATGGCATTCTCCTTGGCTTTTTTGGTCTT---ATTGAATTTCCAAACCGCAAAAATGTCT-GCAT-TCTTAAATTTTAGGTTATGTTCCATTC---CATGTTCATGTTTTCTATTTCAGCTTATATTTATGTTAACAATSizeHit CountTotal NormTotal
No Reads
droFic1
GGCACACAGTTTACCAGTAGAGCATTCAAGAAGTTTGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTTCATGATTC--TATTGGAAAAACTTCAAATTTGTTTTGCAATTGCTCCATAATTGATGTAGGCAGTAGCAAAAT--ATTCTATTTGCCGTCATTAAAGTCTTCTC-CCATTTGTCGAGG-TTA---T-----------AATAAGC--TTATGCGGT--TTT---------TA-------AAAATGTTTGTCTTTTTGG------------------TTGC---CTTTTCATTTCATATGAAAAACAACTCA-ATGC-TG-AAAGCTTAACGTTATGTACTTAAAAATTATATT-----------------TCAAA--AAATGGCAATAAGSizeHit CountTotal NormTotal
No Reads
droRho1
AAATCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCTTAT------------------CT----------------TCATCGAAACTACTGCCAAAGC-TGCAAAATTTGAGGTTTTGTACTTAAAAATAAAATT-----------------TCGGAAAATGTGGCAATAAGSizeHit CountTotal NormTotal
No Reads
droBia1
TAATAAA--------------------------------------------------------------------TG--ATTTTA-CTTCTGGCTTCTAAAAGTTTCTCATCGTGACTACTACAAGGTCCACATATAGCCG------------------------------------ATCTCATATAATTGAATATTGCAATTTCCTTGAAACTCTTCTTCGC---CTCTGACGTCCAGCTTTCAAACAGCGCG-CTGT-TTGCGAAAGTAACGTTGGTACCAAAAAAGTTAAATA-----------------TCAGAGAAAGTGCGCAAAAGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAAT-------------------TCTCAGAGTTTAGTTGCCATTTCTTTCATTTTTTGATACAGTTATAGCTTAATTTTTCTTT-TTACAACCTCCTAAGTCCGTTT-TTATT-GTCA-AATGG-TAGC-----------GATAAGTGTTTTTGCCTTACTTTAGAAGACATTT-C-----AAATGTATGTC--------------------------TATTGATTTTTTTCTTTCACAGTGCAAACAAAGGG-GCATTTGCAAAATTCGAGGTTATGATCTAAAAAATTTAATT-----------------TGTCCAAGAATCGAAAAAAGSizeHit CountTotal NormTotal
No Reads
droEug1
AT-----GTTTG--CTTTCCTAAACTTTAGAACTATGCCTGCAACTTTTCCATTTTGTCGCCAAACGATAACAAAAC--TTCTTG-CCAGTGTCTTCAAAATCACGAA-AAATTTCCTCAGCAATAATGACA-------------------GTTGCCGT--TTT---------AAAA-----AAAAACTGGACAATAGCATTCACCTTGGATACTTGTCCCTT---CATATTCATCCACAGGGCAAACAACTCC-GAGT-TGTTGAATTTGAGGTTATGATCTAGAAACGCAAATT-----------------CTAAAAAAAGTGGTTGAAAGSizeHit CountTotal NormTotal
No Reads
dm3
AAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCT-GCAT-TTGAACAAGTAGGGTAAGGACCTAAAAACTATAATT-----------------TCTCCGAAAATCGCAAAGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TTGGGAACTCGAAGGTGCGACCTAAAAACGTTAATT-----------------ACAAAAAAAGTGCTCGAAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................TGGGAACTCGAAGGTGCGACCTAAA...............................................2511.00100000000010000000
..........................................................................................................................................................................................................................................................................ACTCGAAGGTGCGACCTAAAAACGTT.........................................2611.00100000000001000000
..................................................................................................................................................................................................................................................................T-TTGGGAACTCGAAGGTGCGACCTAA................................................2611.00100000000010000000
droSec2
TTCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGTCCATGTTTA--CGGCGAAACTGATTGGCATTAAAGTGGGCTTTTTTCCACATTTTAGCCAAGCGATAGCAAATA--TCTCTA-GCTTTATCTTTAAAAATGGCA--TAATGC-------AATTCCTGTTCAACTTCT------GG--TCTTGAAGC--TTT---------A---------AAACCTTTGCAACTTTTC------------------CTTT---GACTTCTAGCTATATGCTGAACACATGT-ACAT-TTTGAAAAGTGAGGTTGCCACCTAAAAATTAAAATT-----------------TCTCCCAAAATCGGAAAAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......TGTTTA--CGGCGAAACTGATTGGCAT............................................................................................................................................................................................................................................................................................................253113.0033903520006010295
..TCCATGTTTA--CGGCGAAACTGATTGGC..............................................................................................................................................................................................................................................................................................................27116.0016000000000016
......TGTTTA--CGGCGAAACTGATTGGCATT...........................................................................................................................................................................................................................................................................................................26310.0030047000000019
......TGTTTA--CGGCGAAACTGATTGGCA.............................................................................................................................................................................................................................................................................................................2436.6720017100000020
......................................TGGGCTTTTTTCCACATTTTAGCCAAGCGA.........................................................................................................................................................................................................................................................................3036.0018000000000018
......................................................................................................................................................................................................................................................................TGAAAAGTGAGGTTGCCACCTAAAAAT............................................2712.00201000000001
......TGTTTA--CGGCGAAACTGATTGGC..............................................................................................................................................................................................................................................................................................................2332.00605010000000
............................................................................................................................................................................................................................TTT---GACTTCTAGCTATATGCTGAACA....................................................................................2611.00101000000000
.............................................................................................................................................................................................................................................................T-ACAT-TTTGAAAAGTGAGGTTGCCACC...................................................2711.00101000000000
..............................................................................................................................CCTGTTCAACTTCT------GG--TCTTGAAGC--T...........................................................................................................................................................................2611.00101000000000
..........TA--CGGCGAAACTGATTGGCATTAAAG.......................................................................................................................................................................................................................................................................................................2631.00301100010000
...........................................................................TA--TCTCTA-GCTTTATCTTTAAAAATGGCA--................................................................................................................................................................................................................................2911.00101000000000
...........................................................................................................................................T------GG--TCTTGAAGC--TTT---------A---------AAACCTTTGC............................................................................................................................................2611.00101000000000
.......GTTTA--CGGCGAAACTGATTGGCAT............................................................................................................................................................................................................................................................................................................2431.00303000000000
.................................................................................................................GC-------AATTCCTGTTCAACTTCT------GG--TC.....................................................................................................................................................................................2411.00101000000000
.......GTTTA--CGGCGAAACTGATTGGCA.............................................................................................................................................................................................................................................................................................................2331.00302000000010
...........................................................................................................................................................................................................................................................TGT-ACAT-TTTGAAAAGTGAGGTTGCC......................................................2611.00100100000000
............................................................................................................................TTCCTGTTCAACTTCT------GG--TCTTG..................................................................................................................................................................................2311.00101000000000
..............................................................................................................................................................................................................................T---GACTTCTAGCTATATGCTGAACA....................................................................................2411.00101000000000
........................................................TTAGCCAAGCGATAGCAAATA--TCTCT.........................................................................................................................................................................................................................................................2631.00301200000000
.............................................................................................................TAATGC-------AATTCCTGTTCAACTTCT------GG--TC.....................................................................................................................................................................................2811.00100100000000
.........................................................................................................................................................TGAAGC--TTT---------A---------AAACCTTTGCAACTTT......................................................................................................................................2611.00101000000000
..............................................................................................................AATGC-------AATTCCTGTTCAACTTCT------GG--TC.....................................................................................................................................................................................2711.00101000000000
................................................................................................................TGC-------AATTCCTGTTCAACTTCT------GG--TCT....................................................................................................................................................................................2611.00110000000000
......TGTTTA--CGGCGAAACTGATTGGCATTA..........................................................................................................................................................................................................................................................................................................2731.00303000000000
............................................................................................................................................................................................TTTGCAACTTTTC------------------CTTT---GACTTCTAGC.................................................................................................2711.00101000000000
...................AAACTGATTGGCATTAAAGTG.....................................................................................................................................................................................................................................................................................................2130.67200000020000
......TGTTTA--CGGCGAAACTGATTGG...............................................................................................................................................................................................................................................................................................................2230.67202000000000
....................AACTGATTGGCATTAAAGTGGGCTTT...............................................................................................................................................................................................................................................................................................2630.67202000000000
................................................................................................................................TGTTCAACTTCT------GG--TCTTGAAGC--TT..........................................................................................................................................................................2530.67201100000000
.........TTA--CGGCGAAACTGATTGGCATTAAAG.......................................................................................................................................................................................................................................................................................................2730.67202000000000
...................AAACTGATTGGCATTAAAGTGGGC..................................................................................................................................................................................................................................................................................................2430.67200200000000
...................AAACTGATTGGCATTAAAGTGGGCTT................................................................................................................................................................................................................................................................................................2630.67201100000000
..........TA--CGGCGAAACTGATTGGCA.............................................................................................................................................................................................................................................................................................................2030.33100100000000
...................AAACTGATTGGCATTAAAGTGGG...................................................................................................................................................................................................................................................................................................2330.33100000010000
...................................................................................................................................................................................................................................................TGAACACATGT-ACAT-TTTGAAAAGT...............................................................2530.33101000000000
......TGTTTA--CGGCGAAACTGATTGGCAC............................................................................................................................................................................................................................................................................................................2530.33100000000001
.......................TGATTGGCATTAAAGTGGGCTTTTTTC...........................................................................................................................................................................................................................................................................................2730.33101000000000
........TTTA--CGGCGAAACTGATTGGCATTAA.........................................................................................................................................................................................................................................................................................................2630.33101000000000
..................................................CACATTTTAGCCAAGCGATAGCAAA..................................................................................................................................................................................................................................................................2530.33101000000000
............................................TTTTTCCACATTTTAGCCAAGCGA.........................................................................................................................................................................................................................................................................2430.33101000000000
......................................................TTTTAGCCAAGCGATAGCAAATA--TC............................................................................................................................................................................................................................................................2530.33100010000000
.............................................................CAAGCGATAGCAAATA--TCTCTA-GCTT...................................................................................................................................................................................................................................................2630.33101000000000
......TGTTTA--CGGCGAAACTGATTGGCATC...........................................................................................................................................................................................................................................................................................................2630.33100100000000
...................AAACTGATTGGCATTAAAGTGGGCTTTT..............................................................................................................................................................................................................................................................................................2830.33101000000000
..........TA--CGGCGAAACTGATTGGCATTAAAGT......................................................................................................................................................................................................................................................................................................2730.33100100000000
............................................TTTTTCCACATTTTAGCCAAGC...........................................................................................................................................................................................................................................................................2230.33101000000000
......TGTTTA--CGGCGAAACTGAT..................................................................................................................................................................................................................................................................................................................1930.33100100000000
.................CGAAACTGATTGGCATTAAAGTGG....................................................................................................................................................................................................................................................................................................2430.33100100000000
............................................TTTTTCCACATTTTAGCCAAGCGATAGC.....................................................................................................................................................................................................................................................................2830.33101000000000
................................................TCCACATTTTAGCCAAGCGATAGCAAA..................................................................................................................................................................................................................................................................2730.33101000000000
......TGTTTA--CGGCGAAACTGATTGGCAG............................................................................................................................................................................................................................................................................................................2530.33100000000001
.......GTTTA--CGGCGAAACTGATTGGC..............................................................................................................................................................................................................................................................................................................2230.33101000000000
.................CGAAACTGATTGGCATTAAAGTGGGC..................................................................................................................................................................................................................................................................................................2630.33101000000000
......................................TGGGCTTTTTTCCACATTTTAGCCA..............................................................................................................................................................................................................................................................................2530.33101000000000
......TGTTTA--CGGCGAAACTGATTG................................................................................................................................................................................................................................................................................................................2130.33100010000000
......TGTTTA--CGGCGAAACTGATTGGCATTT..........................................................................................................................................................................................................................................................................................................2730.33100100000000
....................AACTGATTGGCATTAAAGTGGGCTT................................................................................................................................................................................................................................................................................................2530.33100100000000
................................................................................................................................TGTTCAACTTCT------GG--TCTTGAAGC--TTT---------................................................................................................................................................................2630.33101000000000
....CATGTTTA--CGGCGAAACTGATTGGC..............................................................................................................................................................................................................................................................................................................2530.33101000000000
.................................................................................................................................GTTCAACTTCT------GG--TCTTGAAGC--TTT---------A---------......................................................................................................................................................2630.33100000010000
.......................TGATTGGCATTAAAGTGGGCTTTTT.............................................................................................................................................................................................................................................................................................2530.33101000000000
...................AAACTGATTGGCATTAAAGTGG....................................................................................................................................................................................................................................................................................................2230.33100000010000
droEre2
CTCGAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAACATTTCC-GTAT-TTCAGAACCTCATGTTGCGACTTAAAAATGTTAATT-----------------AATACGAAAGGGCGCAAAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 03:51 AM