dps_2251

intron [Dpse\GA10575-in]; exon [dpse_GLEANR_10403:3]; CDS [Dpse\GA10575-cds]; CDS [Dpse\GA10575-cds]; exon [dpse_GLEANR_10403:4]

##################################################---------------------------------------------################################################## TGCAATGGATACGACGCCTTTCTCTGAGCTGGCACTAGAGTCGCAGTCCAGTGTTGCCGCAGAAGATCCAGAGCGTCAACCTGAGACAGGTCCAGAGCCAGAGACGGAGCCTGAGTCTTTTGCCGATCCTCAACTCCAAGAAGAT ************************************************..((((.(((............))).))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	GSM343916 embryo	GSM444067 head	M062 head	SRR902012 CNS imaginal disc	V112 male body
..........................................................................GTCAACCTGAGACAGGTCCAGAGCC..............................................	25	0	1	4.00	4	4	0	0	0	0	0	0
....................................................GTTGCCGCAGAAGATCCAGAGCGT.....................................................................	24	0	1	3.00	3	1	0	2	0	0	0	0
...................................................................................................AGAGACGGAGCCTGAGTCTTT.........................	21	0	1	2.00	2	2	0	0	0	0	0	0
.......GATACGACGCCTTTCTCTGAGCTGGC................................................................................................................	26	0	1	2.00	2	1	0	0	0	0	1	0
.........................................CGCAGTCCAGTGTTGCCG......................................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0
....................................................GTTGCCGCAGAAGATCCAGAGC.......................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0
............................................................................CAACCTGAGACAGGTCCAGAGCC..............................................	23	0	1	2.00	2	2	0	0	0	0	0	0
....................................................................................................GAGACGGAGCCTGAGTCT...........................	18	0	1	1.00	1	1	0	0	0	0	0	0
....................................................GTTGCCGCAGAAGATCCAGAG........................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0
.....................................GAGTCGCAGTCCAGTGTTGC........................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
............GACGCCTTTCTCTGAGCTG..................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
.....................................GAGTCGCAGTCCAGTGTTGCCGC.....................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................ATCCAGAGCGTCAACCTGAGACAGGTCC....................................................	28	0	1	1.00	1	0	1	0	0	0	0	0
.........................................................CGCAGAAGATCCAGAGCGTCA...................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
....................................................GTTTCCGCAGAATATCCAGAGCGTC....................................................................	25	2	1	1.00	1	0	0	0	0	0	0	1
.......GATACGACGCCTTTCTCTGA......................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................GAGTCTTTTGCCGATCCTCAACTCC........	25	0	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................CTTTTGCCGATCCTCAACTCCAA......	23	0	1	1.00	1	1	0	0	0	0	0	0
....................................................GGTGCCGCAGAAGATCCAGAGCGT.....................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0
...........................................CAGTCCAGTGTTGCCGCA....................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
TGCAATGGATACGACGCCT..............................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................GCCGCAGAAGATCCAGAGCGTC....................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0
..................TTTCTCTGAGCTGGCACTAGAGTCGCA....................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
...................TTCTCTGAGCTGGCACTAGAGTCGCAG...................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................TTGCCGCAGAAGATCCAGAGC.......................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................GCCGCAGAAGATCCAGAGC.......................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................AGAGACGGAGCCTGAGTCTT..........................	20	0	1	1.00	1	1	0	0	0	0	0	0
.......................................GTCGCAGTCCAGTGTTGC........................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
........................................TCGCAGTCCAGTGTTGCCGCAGAA.................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0
.....................................................................AGAGCGTCAACCTGAGACA.........................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
..................................CTAGAGTCGCAGTCCAGTGTTGC........................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0
.................................ACTAGAGTCGCAGTCCAGT.............................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0
.......................CTGAGCTGGCACTAGAGT........................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
....................................................GGTGCCGCAGAAGATCCAGAGC.......................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................CCAGAGAGGGAGCCTGAG..............................	18	1	5	0.20	1	1	0	0	0	0	0	0
.............................................................................................AGAGCCGGAGAGGGAGCCT.................................	19	2	9	0.11	1	1	0	0	0	0	0	0
.................................................................................................CCGGAGACGGAGCCTGAG..............................	18	1	19	0.05	1	1	0	0	0	0	0	0
..............................................................................................GATCCCGAGAGGGAGCCTGA...............................	20	3	20	0.05	1	1	0	0	0	0	0	0

ACGTTACCTATGCTGCGGAAAGAGACTCGACCGTGATCTCAGCGTCAGGTCACAACGGCGTCTTCTAGGTCTCGCAGTTGGACTCTGTCCAGGTCTCGGTCTCTGCCTCGGACTCAGAAAACGGCTAGGAGTTGAGGTTCTTCTA ************************************************..((((.(((............))).))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body
......................................................................................................................AAACGGCTAGCAGTTGAG.........	18	1	1	1.00	1	1
....................................................................................................................AAAGACGGCTAGCAGTTGAGGT.......	22	3	4	0.25	1	1
...................................................................GGTCTCGCAGTGGGACTCG...........................................................	19	2	6	0.17	1	1

Species	Coordinate	ID	Alignment
dp5	Unknown_group_8:48425-48569 +	dps_2251	TGC------AATGGATACGACGCCTTTCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGTGTTGCCGCAGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAG------AGCCAGAGACGGAGCCTGAGTCTTTTGCCGATCCTCAACTCCAAGAA-GAT------------------------
droPer2	scaffold_103:33024-33168 +	dpe_641	TGC------AATGGATACGACGCCTTTCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGTGTTGCCGCAGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAG------AGCCAGAGACGGAGCCTGAGTCTTTTGCCGATCCTCAACTCCAAGAA-GAT------------------------
droWil2	scf2_1100000004943:723971-724101 +		AGC--AACCTTTACATGATGCATCACTTGGGGCGCCTAGTAGTGAGCTCCTC------------------GAAGATACGGAAACACAAGAAAAAACATTGCCCCGAGTGAATTCCGAGGTGGAACTAGAGCCTCGAGCAGAC-------------------A--------CAGGC-GAT------------------------
droFic1	scf7180000454040:528782-528926 +		TGTAGATGTTTCAAATAATGACTCTACAGGCGAACAAGCAACAGAGTCTCTCAAACCGAATAACGAT------GACGTAGAT------------------CCTCAGGCTGATGTAAATCCAGAGCCAAAGCCTGAGGACAAC-------------------G--------TTGACG-AGAAAAGAATGTCCGCTAAT------
droEle1	scf7180000491238:229537-229652 +		TC--------------------CCTACTAGGGACTCAACTAATAAACTTCTTTCAACCGATAACACAGGAGAAGACGTAGAT------------------CCAAACTCAGAACTAAAGTCTGAACCAAAGGCAGAGACGAGC-------------------C--------TTGAGG-AAAAT---------------------
droRho1	scf7180000778020:10179-10323 -		CGT------TTTAGAAAAGGCCCCTACTAGGGAGCCAACAAAAGACTTGCTTTCATCGAATAACACAGAAGTAGATGTAGAT------------------CGCCAGTCCGATTTAAATTTAGACCTAAAGCCAGAGACGGAC-------------------C--------TTGAGG-AAAACGCCAAATCTACTGAT------
droBia1	scf7180000301495:893926-894031 -		AA------------------------------------CAATGGACTCCCTTTTAAAGAATAATACAGATGAGGTTGTAGAA------------------CACCAGTCCGGTACAAGTACAGATTCCAAGCCAGAGGAGGAC-------------------T--------TGGAGG-ACCGACTCCAG---------------
droTak1	scf7180000414054:30320-30466 -		TC----------AATAGACGTCACTACACAGGAGCCAACAACAGAGTCCCTTTCAACGAATAATACAGGGCAGGATGTAGAT------------------CTCCAATCCGATTCAAGTTCGGACTCTAAGCCAGATGGGAAC-------------------C--------TGGGGG-ACCAACCTAAGCCTACCAATCCTACA
droEug1	scf7180000408984:287792-287918 +		TGT------TTTAGATGAAGTCGCTACTAATGAGTCACCAACGGAGACCAATTCAACAAATAACACAGACATAGATTTAAAT------------------CTCCAGTTCCCTTTAAAATCAGACGAAATGTCAGAGACGGAT-------------------T--------TGGAA-GAT------------------------
dm3	chr4:941152-941263 -		TT---------CAGAAGACATTTCCTCCAGAGAGTCAGCAATAAAGTCAACTTCTACAAAAAATACAGGAGTAGATGTAGGT------------------CTCCAAT------------CAGATTCTAAGCCAGAGACTACC-------------------C--------TTAAC-GAT------------------------
droSim2	4:735663-735774 -		TT---------CAGAAGATACTTCCTCCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAACAATACAGGAGTAGATGTAGAT------------------CTGAAA------------TCAGATTCTAAGTCAGTGACTACC-------------------C--------TTGAC-GAT------------------------
droSec2	scaffold_30:643269-643380 -		TT---------CAGAAGATACTTCCTCCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAACAATACAGGAGTAGATGTAGAT------------------CTAAAA------------TCAGATTCTAAGTCAGTGACTACC-------------------C--------TTGAC-GAT------------------------
droYak3	4:1006752-1006877 -		TAT---------------------CTCAAGAGAGTCAGCAATAAAGTCAATTCCAACGAATAATACAGGAGTAGATGTAGAT------------------CTCCAGTCAGATTCTAATCCAGATCCCAAGCCAGAGACTACC-------------------C--------TTGACG-ATAAACAGGACTCTGA----------
droEre2	scaffold_4512:334900-335032 +		TCG--ATGTTTTAAAAGACATCTCCTCAAAAGAGTCAGCAATAAAGTCAATTTCAACGAATAATACAGGAGTAGATGTAGAT------------------CTCCAGTCAGACTCTAATCCAGATCCTAAGCCAGAGACTACC-------------------C--------TTGACG-ATAA----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

TGC------AATGGATACGACGCCTTTCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGTGTTGCCGCAGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAG------AGCCAGAGACGGAGCCTGAGTCTTTTGCCGATCCTCAACTCCAAGAA-GAT------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................GTCAACCTGAGACAGGTCCAG------AGCC.......................................................................	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.............................................................GTTGCCGCAGAAGATCCAGAG------------------CGT....................................................................................................	24	1	3.00	3	0	1	0	0	2	0	0	0	0	0
....................................................................................................................................AGAGACGGAGCCTGAGTCTTT..................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............GATACGACGCCTTTCTCTGAGCTGGC....................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	0	0	0	0	1
...............................................CGCAGTCC---AGTGTTGCCG.......................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................GTTGCCGCAGAAGATCCAGAG------------------C......................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................CAACCTGAGACAGGTCCAG------AGCC.......................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................GAGACGGAGCCTGAGTCT....................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................GTTGCCGCAGAAGATCCAGAG------------------.......................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................GAGTCGCAGTCC---AGTGTTGC.........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GACGCCTTTCTCTGAGCTG......................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................GAGTCGCAGTCC---AGTGTTGCCGC......................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................ATCCAGAG------------------CGTCAACCTGAGACAGGTCC...................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................CGCAGAAGATCCAGAG------------------CGTCA..................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............GATACGACGCCTTTCTCTGA..........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................GAGTCTTTTGCCGATCCTCAACTCC.................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................CTTTTGCCGATCCTCAACTCCAA...............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................CAGTCC---AGTGTTGCCGCA.....................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
TGC------AATGGATACGACGCCT..................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................GCCGCAGAAGATCCAGAG------------------CGTC...................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................TTTCTCTGAGCTGGCACTAGAGTCGCA........................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TTCTCTGAGCTGGCACTAGAGTCGCAG.......................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................TTGCCGCAGAAGATCCAGAG------------------C......................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................GCCGCAGAAGATCCAGAG------------------C......................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................AGAGACGGAGCCTGAGTCTT...................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................GTCGCAGTCC---AGTGTTGC.........................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................TCGCAGTCC---AGTGTTGCCGCAGAA..................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................AGAG------------------CGTCAACCTGAGACA........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................CTAGAGTCGCAGTCC---AGTGTTGC.........................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................ACTAGAGTCGCAGTCC---AGT..............................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................CTGAGCTGGCACTAGAGT............................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGC------AATGGATACGACGCCTTTCTCTGAGCTGGCACTAGAGTCGCAGTCC---AGTGTTGCCGCAGAAGATCCAGAG------------------CGTCAACCTGAGACAGGTCCAG------AGCCAGAGACGGAGCCTGAGTCTTTTGCCGATCCTCAACTCCAAGAA-GAT------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................GATCCAGAG------------------CGTCAACCTGA............................................................................................	20	1	13.00	13	13	0	0	0	0	0
..............ATACGACGCCTTTCTCTGAGCT.......................................................................................................................................................................	22	1	9.00	9	9	0	0	0	0	0
.............GATACGACGCCTTTCTCTGAGCT.......................................................................................................................................................................	23	1	8.00	8	8	0	0	0	0	0
..........ATGGATACGACGCCTTTCTCTGAGCT.......................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0
.........................................................................GATCCAGAG------------------CGTCAACCTGG............................................................................................	20	1	4.00	4	4	0	0	0	0	0
.............GATACGACGCCTTTCTCTGAGCTGG.....................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0
.......................CTTTCTCTGAGCTGGCACTAGAGT............................................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0
.......................................................................................................................................GACGGAGCCTGAGTCTTTTGCCGATCCT........................................	28	1	3.00	3	3	0	0	0	0	0
.........................TTCTCTGAGCTGGCACTA................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................GACGGAGCCTGAGTCTTTTGCC..............................................	22	1	3.00	3	3	0	0	0	0	0
.....................GCCTTTCTCTGAGCTGGCACT.................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.............................................GTCGCAGTCC---AGTGTTGC.........................................................................................................................................	18	1	3.00	3	2	0	1	0	0	0
..............ATACGACGCCTTTCTCTGAGCTGG.....................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
........................................................................AGATCCAGAG------------------CGTCAACCTGA............................................................................................	21	1	3.00	3	3	0	0	0	0	0
........................TTTCTCTGAGCTGGCACTA................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......................CTTTCTCTGAGCTGGCACTAGAGTC...........................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
................ACGACGCCTTTCTCTGAGCT.......................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
....................CGCCTTTCTCTGAGCTGGCACTAGAGT............................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
...........................CTCTGAGCTGGCACTAGAGT............................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
....................CGCCTTTCTCTGAGCTGG.....................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
...................ACGCCTTTCTCTGAGCTGGCACTAGG..............................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..............ATACGACGCCTTTCTCTGA..........................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.........AATGGATACGACGCCTTTCTCTGAGCC.......................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................GTTGCCGCAGAAGATCCAGAG------------------C......................................................................................................	22	1	1.00	1	0	0	1	0	0	0
............GGATACGACGCCTTTCTCTGAGCTGGC....................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................ATCCAGAG------------------CGTCAACCTGG............................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................TTTTGCCGATCCTCAACTCC.................................	20	1	1.00	1	0	1	0	0	0	0
..................GACGCCTTTCTCTGAGCT.......................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................ATCCAGAG------------------CGTCAACCTGA............................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................CGCAGTCC---AGTGTTGCCGCAGAA..................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................GAGACGGAGCCTGAGTCTT...................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................CGGAGCCTGAGTCTTTTGCC..............................................	20	1	1.00	1	1	0	0	0	0	0
..............ATACGACGCCTTTCTCTGAGCC.......................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............GATACGACGCCTTTCTCTGAGCTGGCACT.................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..............ATACGACGCCTTTCTCTGAGCTGGC....................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................ACGACGCCTTTCTCTGAGCTG......................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................TCTGAGCTGGCACTAGAGT............................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................CAGAGACGGAGCCTGAGT......................................................	18	1	1.00	1	1	0	0	0	0	0
....................CGCCTTTCTCTGAGCTGGCACTAGG..............................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.GC------AATGGATACGACGCCTTTCTCTGAGCT.......................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.........AATGGATACGACGCCTTTCTCTGAGCT.......................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................CGGAGCCTGAGTCTTTTGCCC.............................................	21	1	1.00	1	1	0	0	0	0	0
.......................CTTTCTCTGAGCTGGCACTAGA..............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................AGAGACGGAGCCTGAGTCT....................................................	19	1	1.00	1	1	0	0	0	0	0
.......................CTTTCTCTGAGCTGGCACTAGG..............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................ACGGAGCCTGAGTCTTTTGCC..............................................	21	1	1.00	1	1	0	0	0	0	0
....................CGCCTTTCTCTGAGCTGGCACTAGAGTCG..........................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................G------AGCCAGAGACGGAGCCTGAGT......................................................	22	1	1.00	1	0	1	0	0	0	0
..............ATACGACGCCTTTCTCTGG..........................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................ACGACGCCTTTCTCTGAGCTGGCA...................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................ACGACGCCTTTCTCTGAGCTGG.....................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................GTCTTTTGCCGATCCTCAAC....................................	20	1	1.00	1	1	0	0	0	0	0
........................TTTCTCTGAGCTGGCACTAGA..............................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................CGACGCCTTTCTCTGAGCT.......................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................CTAGAGTCGCAGTCC---AGG..............................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................GCAGAAGATCCAGAG------------------CGTCAACCTGAGA..........................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................GTTGCCGCAGAAGATCCAGAG------------------CGT....................................................................................................	24	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................CAGAGACGGAGCCTGAGG......................................................	18	2	0.50	1	1	0	0	0	0	0

droWil2

AGC--AACCTTTACATGATGCATCACTTGGGGCGCCTAGTAGTGAGCTCCTC------------------GAAGATACGGAAACACAAGAAAAAACATTGCCCCGAGTGAATTCCGAGGTGGAACTAGAGCCTCGAGCAGAC-------------------A--------CAGGC-GAT------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................GGTGGAACTAGAGCCTCGAGC.................................................................	21	1	20.00	20	0	0	4	16	0
............................................................................................................GAATTCCGAGGTGGAACTAGAGCCT......................................................................	25	1	8.00	8	0	0	2	6	0
.....................................................................................................................GGTGGAACTAGAGCCTCGAGCA................................................................	22	1	6.00	6	0	0	0	6	0
......................................................................................................................GTGGAACTAGAGCCTCGAGC.................................................................	20	1	5.00	5	0	0	0	5	0
.....................................................................................................................GGTGGAACTAGAGCCTCGA...................................................................	19	1	3.00	3	0	0	0	3	0
.................................GCCTAGTAGTGAGCTCCTC------------------GAA..................................................................................................................................	22	1	3.00	3	0	0	0	3	0
.........................................................................................................................GAACTAGAGCCTCGAGCAGAC-------------------A--------CA...............................	24	1	3.00	3	0	0	1	2	0
.....................................................................................................................GGTGGAACTAGAGCCTCGAGCAGAC-------------------A--------.................................	26	1	3.00	3	0	0	1	2	0
..............................GGCGCCTAGTAGTGAGCTCCTC------------------GAAG.................................................................................................................................	26	1	2.00	2	0	0	0	2	0
.........................................................................................................................GAACTAGAGCCTCGAGCAGAC-------------------A--------CAGGC-...........................	27	1	2.00	2	0	0	0	2	0
..........................TTGGGGCGCCTAGTAGTGAG.............................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
................................CGCCTAGTAGTGAGCTCCT........................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
.................................GCCTAGTAGTGAGCTCCTC------------------GAAGAT...............................................................................................................................	25	1	2.00	2	0	0	0	2	0
...................................................................................................................GAGGTGGAACTAGAGCCT......................................................................	18	1	2.00	2	0	0	0	2	0
..............................................................................................................ATTCCGAGGTGGAACTAGAGC........................................................................	21	1	2.00	2	0	0	0	2	0
...........................................................................................................................ACTAGAGCCTCGAGCAGAC-------------------A--------CAGGC-...........................	25	1	1.00	1	0	0	0	1	0
..................................................................................................TGCCCCGAGTGAATTCCGA......................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................GCTCCTC------------------GAAGATACGGAAACACAAG..................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................CCTAGTAGTGAGCTCCTC------------------G....................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.............CATGATGCATCACTTGGGGCGCCTAGT...................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.........................................................................................................................GAACTAGAGCCTCGAGCAG...............................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................GTGAATTCCGAGGTGGAACTAGAGCC.......................................................................	26	1	1.00	1	0	0	1	0	0
......................................................................................................................GTGGAACTAGAGCCTCGAG..................................................................	19	1	1.00	1	0	0	0	1	0
..........................TTGGGGCGCCTAGTAGTGAGCTC..........................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...........TACATGATGCATCACTTGGG............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................ATTGCCCCGAGTGAATTCG........................................................................................	19	1	1.00	1	0	0	0	1	0
.......................CACTTGGGGCGCCTAGTAGTGAGCT...........................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....................................AGTAGTGAGCTCCTC------------------GAAGATACGGA..........................................................................................................................	26	1	1.00	1	0	0	0	1	0
.....................................................................................................................................CGAGCAGAC-------------------A--------CAGGC-GAT------------------------	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................GGTGGAACTAGAGCCTCGAGCAGAC-------------------A--------CA...............................	28	1	1.00	1	0	0	0	1	0
...........................................................................................................TGAATTCCGAGGTGGAACTAGAGCC.......................................................................	25	1	1.00	1	0	1	0	0	0
...............................GCGCCTAGTAGTGAGCTC..........................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................................................................TTCCGAGGTGGAACTAGAGC........................................................................	20	1	1.00	1	0	0	0	1	0
...................................CTAGTAGTGAGCTCCTC------------------GAAGAT...............................................................................................................................	23	1	1.00	1	0	0	0	1	0
........................................AGTGAGCTCCTC------------------GAAGATACGGAAACA......................................................................................................................	27	1	1.00	1	0	0	0	1	0
........................................AGTGAGCTCCTC------------------GAAGATACGGAAAC.......................................................................................................................	26	1	1.00	1	0	0	0	1	0
........................................AGTGAGCTCCTC------------------GAAGATACGGAA.........................................................................................................................	24	1	1.00	1	0	0	0	1	0
.....................................................................................................................GGTGGAACTAGAGCCTCGAGCAGAC-------------------A--------C................................	27	1	1.00	1	0	0	0	1	0
.............CATGATGCATCACTTGGGGC..........................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................GGTGGAACTAGAGCCTCGAGCAGAC-------------------..........................................	25	1	1.00	1	0	0	0	1	0
...................................................C------------------GAAGATACGGAAACACA....................................................................................................................	18	1	1.00	1	0	0	0	1	0
.............................................................................................................AATTCCGAGGTGGAACTAGAGCCT......................................................................	24	1	1.00	1	0	0	0	1	0
.........................CTTGGGGCGCCTAGTAGTGAGC............................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........TTACATGATGCATCACTTGGGGC..........................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
........................................AGTGAGCTCCTC------------------GAAGAT...............................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................GTGAATTCCGAGGTGGAACT.............................................................................	20	1	1.00	1	0	0	0	1	0
....................CATCACTTGGGGCGCCTAGTAGT................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.....................................AGTAGTGAGCTCCTC------------------GAAGA................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................................GTGAGCTCCTC------------------GAAGATAC.............................................................................................................................	19	1	1.00	1	0	1	0	0	0
...............................................................................................................TTCCGAGGTGGAACTAGAGCCT......................................................................	22	1	1.00	1	1	0	0	0	0
................................................CCTC------------------GAAGATACGGAAAC.......................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................................................GCCCCGAGTGAATTCCGAG.....................................................................................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................GGTGGAACTAGAGCCTCGAGCAG...............................................................	23	1	1.00	1	0	0	0	1	0
............ACATGATGCATCACTTGG.............................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............ACATGATGCATCACTTGGGGCGCCTA.....................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...........................................GAGCTCCTC------------------GAAGATACGGA..........................................................................................................................	20	1	1.00	1	0	0	1	0	0
.................................................................................................TTGCCCCGAGTGAATTCCGAGGTG..................................................................................	24	1	1.00	1	0	0	0	1	0
.GC--AACCTTTACATGATGCATCA..................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................AGTAGTGAGCTCCTC------------------GAAGATA..............................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................AACTAGAGCCTCGAGCAGAC-------------------A--------CAGGC-...........................	26	1	1.00	1	0	0	1	0	0
.........TTTACATGATGCATCACTTGGGGC..........................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
......................................................................GAAGATACGGAAACACAAGA.................................................................................................................	20	1	1.00	1	0	0	0	1	0
...................................................................................................................GAGGTGGAACTAGAGCCTCGAGCA................................................................	24	1	1.00	1	0	0	0	1	0
.........................................GTGAGCTCCTC------------------GAAGATACG............................................................................................................................	20	1	1.00	1	0	0	1	0	0
..................................CCTAGTAGTGAGCTCCTC------------------GAAGAT...............................................................................................................................	24	1	1.00	1	0	0	1	0	0
.......CCTTTACATGATGCATCACT................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................TAGAGCCTCGAGCAGAC-------------------A--------CAGGC-...........................	23	1	1.00	1	0	0	0	1	0
................................CGCCTAGTAGTGAGCTCCTC------------------GAA..................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................AGGTGGAACTAGAGCCTCGAG..................................................................	21	1	1.00	1	0	0	1	0	0
..............................................................................................................ATTCCGAGGTGGAACTAGAGCCT......................................................................	23	1	1.00	1	0	1	0	0	0
..................................................................................................TGCCCCGAGTGAATTCCGAG.....................................................................................	20	1	1.00	1	0	0	0	1	0
.......................CACTTGGGGCGCCTAGTAGTGA..............................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....AACCTTTACATGATGCATCACT................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................AGAGCCTCGAGCAGAC-------------------A--------CAGGC-...........................	22	1	1.00	1	0	0	0	1	0
.......................CACTTGGGGCGCCTAGTAG.................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................GTAGTGAGCTCCTC------------------GAAGATA..............................................................................................................................	21	1	1.00	1	0	0	0	1	0
............ACATGATGCATCACTTGGGGC..........................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................GCTCCTC------------------GAAGATACGGAA.........................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................................................GAAGATACGGAAACACAAGAA................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........TTACATGATGCATCACTTGGG............................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....AACCTTTACATGATGCAT....................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........TTACATGATGCATCACTTGGGG...........................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................GCCTAGTAGTGAGCTCCTC------------------GAAGATA..............................................................................................................................	26	1	1.00	1	0	1	0	0	0
............................................................................................................................CTAGAGCCTCGAGCAGAC-------------------A--------CAGGC-...........................	24	1	1.00	1	0	0	0	1	0
.............CATGATGCATCACTTGGG............................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.........................CTTGGGGCGCCTAGTAGTGAGCTC..........................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
......................................................................................................................GTGGAACTAGAGCCTCGAGCA................................................................	21	1	1.00	1	0	0	0	1	0

droFic1

TGTAGATGTTTCAAATAATGACTCTACAGGCGAACAAGCAACAGAGTCTCTCAAACCGAATAACGAT------GACGTAGAT------------------CCTCAGGCTGATGTAAATCCAGAGCCAAAGCCTGAGGACAAC-------------------G--------TTGACG-AGAAAAGAATGTCCGCTAAT------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TC--------------------CCTACTAGGGACTCAACTAATAAACTTCTTTCAACCGATAACACAGGAGAAGACGTAGAT------------------CCAAACTCAGAACTAAAGTCTGAACCAAAGGCAGAGACGAGC-------------------C--------TTGAGG-AAAAT---------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGT------TTTAGAAAAGGCCCCTACTAGGGAGCCAACAAAAGACTTGCTTTCATCGAATAACACAGAAGTAGATGTAGAT------------------CGCCAGTCCGATTTAAATTTAGACCTAAAGCCAGAGACGGAC-------------------C--------TTGAGG-AAAACGCCAAATCTACTGAT------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA------------------------------------CAATGGACTCCCTTTTAAAGAATAATACAGATGAGGTTGTAGAA------------------CACCAGTCCGGTACAAGTACAGATTCCAAGCCAGAGGAGGAC-------------------T--------TGGAGG-ACCGACTCCAG---------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TC----------AATAGACGTCACTACACAGGAGCCAACAACAGAGTCCCTTTCAACGAATAATACAGGGCAGGATGTAGAT------------------CTCCAATCCGATTCAAGTTCGGACTCTAAGCCAGATGGGAAC-------------------C--------TGGGGG-ACCAACCTAAGCCTACCAATCCTACA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGT------TTTAGATGAAGTCGCTACTAATGAGTCACCAACGGAGACCAATTCAACAAATAACACAGACATAGATTTAAAT------------------CTCCAGTTCCCTTTAAAATCAGACGAAATGTCAGAGACGGAT-------------------T--------TGGAA-GAT------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TT---------CAGAAGACATTTCCTCCAGAGAGTCAGCAATAAAGTCAACTTCTACAAAAAATACAGGAGTAGATGTAGGT------------------CTCCAAT------------CAGATTCTAAGCCAGAGACTACC-------------------C--------TTAAC-GAT------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................AGGAGTAGATGTAGGT------------------CTCCAAT------------C...................................................................................	24	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ACAGGAGTAGATGTAGGT------------------CTCCAAT------------C...................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................TCTAAGCCAGAGACTACC-------------------C--------TT...............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GGAGTAGATGTAGGT------------------CTCC...................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TCTAAGCCAGAGACTACC-------------------C--------TTAAC-GA.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAGATTCTAAGCCAGAGAC.................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAGATTCTAAGCCAGAGACTAC..............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................AAT------------CAGATTCTAAGCCAGAGA..................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................T------------CAGATTCTAAGCCAGAGACTACC-------------------C--------TT...............................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CCTCCAGAGAGTCAGCAATAAAGTCAAC........................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TT---------CAGAAGATACTTCCTCCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAACAATACAGGAGTAGATGTAGAT------------------CTGAAA------------TCAGATTCTAAGTCAGTGACTACC-------------------C--------TTGAC-GAT------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................AGGAGTAGATGTAGAT------------------CT.....................................................................................................	18	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GAGTAGATGTAGAT------------------CTGAAA------------TC...................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ACAGGAGTAGATGTAGAT------------------.......................................................................................................	18	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ACAGGAGTAGATGTAGAT------------------C......................................................................................................	19	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATACAGGAGTAGATGTAGAT------------------C......................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.T---------CAGAAGATACTTCCTCCAGAGAGTCA......................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0
..............................................................................................................................TAAGTCAGTGACTACC-------------------C--------T................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GAAA------------TCAGATTCTAAGTCAGTGACT................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGATGTAGAT------------------CTGAAA------------TCAGATT..............................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................CAATACAGGAGTAGATGTAGAT------------------CT.....................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................GATTCTAAGTCAGTGACTACC-------------------C--------TTGAC-...........................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAATTTCAACAAACAATACAGGAGTAGA................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................GCAAAAAAGTCAATTTCAACAAACAATA..........................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTCAACAAACAATACAGGAGTAGATGT.............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................CAACAAACAATACAGGAGTAGATGTA............................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GTCAGCAAAAAAGTCAATTTCAACAAACA.............................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................ATGTAGAT------------------CTGAAA------------TCAGATT..............................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGAAA------------TCAGATTCTAAGT........................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................AA------------TCAGATTCTAAGTCAGTGACT................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATACAGGAGTAGATGTAGAT------------------CT.....................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GAAA------------TCAGATTCTAAGTCAGTGA..................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATACAGGAGTAGATGTAGAT------------------CTGAAA------------TCA..................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CTAAGTCAGTGACTACC-------------------C--------T................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CAACAAACAATACAGGAGT...................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CTAAGTCAGTGACTACC-------------------C--------TTGA.............................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................T------------------CTGAAA------------TCAGATTCTAAGTCAGTG...................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................ATACAGGAGTAGATGTAGAT------------------.......................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................AAACAATACAGGAGTAGATGTAGAT------------------CT.....................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTCTAAGTCAGTGACTACC-------------------..........................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGATGTAGAT------------------CTGAAA------------TCAGATTCTA...........................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GAAA------------TCAGATTCTAAGTCAGTGACTACC-------------------..........................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGATGTAGAT------------------CTGAAA------------TCAGATTCTAA..........................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAGGAGTAGATGTAGAT------------------C......................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TACAGGAGTAGATGTAGAT------------------.......................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........CAGAAGATACTTCCTCCAGAGAGTCAGCA...................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................CTGAAA------------TCAGATTCTAAGTC.......................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATACAGGAGTAGATGTAGAT------------------CTGAAA------------.....................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................ATACAGGAGTAGATGTAGAT------------------CTGAAA------------TC...................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AAAGTCAATTTCAACAAACAATACAGGA.....................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............GAAGATACTTCCTCCAGAGAGTCA......................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................GATTCTAAGTCAGTGACA................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................TCTAAGTCAGTGACTACC-------------------C--------TTG..............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................TACAGGAGTAGATGTAGAT------------------CT.....................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TT---------CAGAAGATACTTCCTCCAGAGAGTCAGCAAAAAAGTCAATTTCAACAAACAATACAGGAGTAGATGTAGAT------------------CTAAAA------------TCAGATTCTAAGTCAGTGACTACC-------------------C--------TTGAC-GAT------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................AT------------------CTAAAA------------TCAGATTCTAAGT........................................................................	21	1	6.00	6	0	2	4	0
....................................................................................................CTAAAA------------TCAGATTCTAAGT........................................................................	19	1	3.00	3	1	0	2	0
......................................................AACAAACAATACAGGAGT...................................................................................................................................	18	1	2.00	2	0	0	2	0
..............................................................ATACAGGAGTAGATGTAGAT------------------CT.....................................................................................................	22	1	2.00	2	0	0	2	0
...........................................................ACAATACAGGAGTAGATGTAGAT------------------.......................................................................................................	23	1	1.00	1	0	1	0	0
.................ATACTTCCTCCAGAGAGT........................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........................................................AACAATACAGGAGTAGATGTAGAT------------------CT.....................................................................................................	26	1	1.00	1	0	0	1	0
TT---------CAGAAGATACTTCCTCCAGAGA..........................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.........................................................AAACAATACAGGAGTAGATGTA............................................................................................................................	22	1	1.00	1	0	0	1	0
.........................................................AAACAATACAGGAGTAGATGTAG...........................................................................................................................	23	1	1.00	1	0	0	1	0
................................................................ACAGGAGTAGATGTAGAT------------------.......................................................................................................	18	1	1.00	1	0	0	1	0
............................................................CAATACAGGAGTAGATGT.............................................................................................................................	18	1	1.00	1	0	0	1	0
..............................................................ATACAGGAGTAGATGTAGAT------------------.......................................................................................................	20	1	1.00	1	0	0	1	0
..............AAGATACTTCCTCCAGAGA..........................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................CAGGAGTAGATGTAGAT------------------C......................................................................................................	18	1	1.00	1	0	0	1	0
...................ACTTCCTCCAGAGAGTCAGCAAAA................................................................................................................................................................	24	1	1.00	1	0	1	0	0
................................................................................AT------------------CTAAAA------------TCAGATTCTAAGTCAGT....................................................................	25	1	1.00	1	0	0	1	0
..........................................................................ATGTAGAT------------------CTAAAA------------TCAGATTCTAAGT........................................................................	27	1	1.00	1	0	0	1	0
...........CAGAAGATACTTCCTCCAGAG...........................................................................................................................................................................	21	1	1.00	1	0	0	1	0
............................................................CAATACAGGAGTAGATGTAGAT------------------CT.....................................................................................................	24	1	1.00	1	0	0	1	0
.................ATACTTCCTCCAGAGAGTC.......................................................................................................................................................................	19	1	1.00	1	0	0	1	0
........................................................CAAACAATACAGGAGTAGATGTA............................................................................................................................	23	1	1.00	1	0	1	0	0
......................................................................................................AAAA------------TCAGATTCTAAGTC.......................................................................	18	1	1.00	1	0	0	1	0
..............................................................ATACAGGAGTAGATGTAGAT------------------CTA....................................................................................................	23	1	1.00	1	0	1	0	0
..................TACTTCCTCCAGAGAGTCAGCA...................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.............GAAGATACTTCCTCCAGAGAGTC.......................................................................................................................................................................	23	1	1.00	1	0	1	0	0

droYak3

TAT---------------------CTCAAGAGAGTCAGCAATAAAGTCAATTCCAACGAATAATACAGGAGTAGATGTAGAT------------------CTCCAGTCAGATTCTAATCCAGATCCCAAGCCAGAGACTACC-------------------C--------TTGACG-ATAAACAGGACTCTGA----------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................ATAATACAGGAGTAGATGT.............................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
......................................................................GTAGATGTAGAT------------------CTCCAGTCAG.............................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.AT---------------------CTCAAGAGAGTCAGCAAT.................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................AGTAGATGTAGAT------------------CTCCAGTCAGATT..........................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATCCCAAGCCAGAGACTACC-------------------C--------TTGAC............................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................GTCAGCAATAAAGTCAATTCCAACGAA...............................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................GTAGATGTAGAT------------------CTCCAGTCAGATTCT........................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................ACAGGAGTAGATGTAGAT------------------CTCC...................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................AGATGTAGAT------------------CTCCAGTCAGATTCT........................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................GATTCTAATCCAGATCCCAAGCC.......................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................CTAATCCAGATCCCAAGCCAGA....................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................AATACAGGAGTAGATGTAGAT------------------CTCCAGTCA..............................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................TCCAGTCAGATTCTAATCCAGATCC.............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................GAGTAGATGTAGAT------------------CTCCAGTCAGATT..........................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................AGATGTAGAT------------------CTCCAGTCAGA............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................CTAATCCAGATCCCAAGCCAGAGACT................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................GATTCTAATCCAGATCCCAAGCCAG.....................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................GATGTAGAT------------------CTCCAGTCAGATTC.........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................ATAATACAGGAGTAGATGTAGAT------------------C......................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................ATTCTAATCCAGATCCCAAGCCAGA....................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................ATAATACAGGAGTAGATGTAGAT------------------CTCC...................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................AGAGACTACC-------------------C--------TTGACG-AT........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................GACTACC-------------------C--------TTGACG-ATAAACAGGAC...............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................AAGAGAGTCAGCAATAAAGT............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................AACGAATAATACAGGAGTAGATGTA............................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................GTCAGCAATAAAGTCAATTCCAAC..................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................GTAGATGTAGAT------------------CTCCAGTCAGATT..........................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CCAGATCCCAAGCCAGAG...................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................AGATGTAGAT------------------CTCCAGTCAGATT..........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................TAGATGTAGAT------------------CTCCAGTCAG.............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ACC-------------------C--------TTGACG-ATAAACAGGA................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................GTAGATGTAGAT------------------CTCCAGTCA..............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................CCAACGAATAATACAGGA.....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................GTAGAT------------------CTCCAGTCAGATT..........................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TCG--ATGTTTTAAAAGACATCTCCTCAAAAGAGTCAGCAATAAAGTCAATTTCAACGAATAATACAGGAGTAGATGTAGAT------------------CTCCAGTCAGACTCTAATCCAGATCCTAAGCCAGAGACTACC-------------------C--------TTGACG-ATAA----------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................AGGAGTAGATGTAGAT------------------CTCCAGTCAGACT..........................................................................................	29	1	12.00	12	0	0	0	0	0	0	12
.................................GTCAGCAATAAAGTCAATTT......................................................................................................................................................	20	1	2.00	2	0	0	0	1	0	1	0
...................................................................................................................AATCCAGATCCTAAGCCAGAGA..................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.........................................................GAATAATACAGGAGTAGATGTA............................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................ATCCAGATCCTAAGCCAGA....................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................ATACAGGAGTAGATGTAGAT------------------C......................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
............AAAAGACATCTCCTCAAAAGA..........................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
............................................................................GTAGAT------------------CTCCAGTCAGACTCT........................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................CAAAAGAGTCAGCAATAAAGTCAATTTC.....................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.................................GTCAGCAATAAAGTCAATTTCAACGAAT..............................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
...................................CAGCAATAAAGTCAATTTCAACG.................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
......................................................................GTAGATGTAGAT------------------CTCCAGTCAGAC...........................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
......................................................AACGAATAATACAGGAGTAGATGTAGA..........................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0
.......GTTTTAAAAGACATCTCCTCAAAAGA..........................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................CTCTAATCCAGATCCTAAGCC.......................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................CTAATCCAGATCCTAAGCCA......................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..................................................................AGGAGTAGATGTAGAT------------------CTCC...................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................TAAGCCAGAGACTACC-------------------C--------TTGACG-AT........................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................CTCTAATCCAGATCCTAAGCCAGA....................................................................	24	1	1.00	1	0	0	0	1	0	0	0
........................................................CGAATAATACAGGAGTAGATGTAG...........................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....................................................................AGTAGATGTAGAT------------------CTCCAGTCAGACTCT........................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................TCCAGATCCTAAGCCAGAGACTACC-------------------C--------T................................	27	1	1.00	1	1	0	0	0	0	0	0
................................................................ACAGGAGTAGATGTAGAT------------------.......................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................ACTCTAATCCAGATCCTAAGC........................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................CAACGAATAATACAGGAGTAGATGT.............................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........................................................................ATGTAGAT------------------CTCCAGTCAGA............................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.........................................................................GATGTAGAT------------------CTCCAGTCAGACT..........................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dps_2251

Unknown_group_8:48475-48519 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.2	-7.2	-7.0