ID:

dps_223

 Coordinate:

XL_group1a:3362787-3362838 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.2 -25.1 -25.0

Flybase annnotation

Antisense to intron [Dpse\GA17935-in]

No Repeatable elements found

mature
  1. 2:4135303-4135324 +
  2. XR_group8:1105625-1105646 +
  3. dps_223  XL_group1a:3362788-3362809 -
star

Sense Strand Reads

AAATATTAGCAGGTGGAAGGTTGGGGGAATAACATTAGCGATTATACAAGCCATTCTCCTATCCATATTCATAAGGGGGATGGGATGGGATGGGAATGGGAATCAAGATGCTAATCCCCAGGTTCCAGGCTGCCAGGCGTCCAGGTCTCGAG
***********************************((((.(((.......((((((((((((((.(((((.......)))))))))))))...)))))).......)))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 GSM343916
embryo
 M059
embryo
 GSM444067
head
 SRR902012
CNS imaginal disc
...............................................................................ATGGGATGGGATGGGAATGGGA................................................... 22 0 3 13.67 41 17 12 5 6 1 0 0
...............................................................................ATGGGATGGGATGGGAATGGG.................................................... 21 0 5 5.60 28 7 11 3 4 1 2 0
................................................................................TGGGATGGGATGGGAATGGG.................................................... 20 0 5 2.40 12 3 2 5 1 1 0 0
................................................................................TGGGATGGGATGGGAATGGGA................................................... 21 0 3 2.33 7 5 1 1 0 0 0 0
...........GGTGGAAGTTTGAGGCAATAACA...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
.......................................................................TAAGGGTGAGGGGATGGGATG............................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
...........GATGGAAGTTTGGGGCAATAACA...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
.......AGCCGGAGGAAGGTTGGG............................................................................................................................... 18 2 8 0.63 5 4 1 0 0 0 0 0
....ATGAGCAGGTTGAAGGTTGG................................................................................................................................ 20 2 2 0.50 1 0 0 0 0 0 0 1
.............................................................................GGGTGTGAAGGGATGGGAATGGGAA.................................................. 25 3 2 0.50 1 1 0 0 0 0 0 0
...........GATGGAAGTTTGGGGCAATAAC....................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................................CAGGGTGCCAGGCGTCGATGT...... 21 3 2 0.50 1 0 0 0 0 0 1 0
................................................................................TGGGATGGGATGGGAATGG..................................................... 19 0 5 0.40 2 2 0 0 0 0 0 0
...................................................................................GATGGAAGGGGATTGGGAATCA............................................... 22 3 7 0.29 2 1 1 0 0 0 0 0
.................................................................................GGGATGGGATGGGAATGGGA................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0
................................................................................TGGGATGGGATGGGAATGGGAT.................................................. 22 1 4 0.25 1 0 0 0 0 1 0 0
..........................................................................GGGGGATGGGATGGGATGGGA......................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0
...........GGTGGAAGTTTGAGGCAATAA........................................................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0
...........................................................................GGGGATGGGATGGGATGGG.......................................................... 19 0 20 0.20 4 2 2 0 0 0 0 0
...............................................................................ATGGGATGGGATGGGAATGG..................................................... 20 0 5 0.20 1 0 0 1 0 0 0 0
............GTGGAAGGTCGTGGGAAT.......................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0
...............................................................................ATGGGATGGGATGGGAATGGGC................................................... 22 1 6 0.17 1 0 1 0 0 0 0 0
.........................................................................AGGGGTGTGGGATGGGATGGGA......................................................... 22 2 8 0.13 1 0 0 0 1 0 0 0
................................................................................TGGGATGGGATGGGAGTGGG.................................................... 20 1 9 0.11 1 0 1 0 0 0 0 0
..............GGAAGTTTGAGGTAATAACA...................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0
......AAGCCGGAGGAAGGTTGGG............................................................................................................................... 19 3 20 0.10 2 1 1 0 0 0 0 0
........................................................................AAGGGGGATAGTGTGGGATG............................................................ 20 3 15 0.07 1 1 0 0 0 0 0 0
...........................................................................GGGGATGGGATGGGATGGGA......................................................... 20 0 17 0.06 1 0 1 0 0 0 0 0
.............................................................................GGATGTGGTGGGATGGGAAAGG..................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0
.......AGCCGGTGGAAGGTGGGGA.............................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0
..............................................................................CAGGGGATGGGATGGGAAT....................................................... 19 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

TTTATAATCGTCCACCTTCCAACCCCCTTATTGTAATCGCTAATATGTTCGGTAAGAGGATAGGTATAAGTATTCCCCCTACCCTACCCTACCCTTACCCTTAGTTCTACGATTAGGGGTCCAAGGTCCGACGGTCCGCAGGTCCAGAGCTC
***********************************((((.(((.......((((((((((((((.(((((.......)))))))))))))...)))))).......)))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM444067
head
 M040
female body
................................................TCGGTAAGAGGACAGGCATAAT.................................................................................. 22 3 1 1.00 1 1 0
.......................CCCCTTATTGTAATCGCTAATA........................................................................................................... 22 0 1 1.00 1 0 1
.................................................AGGTAAGAGGACAGGTATAAT.................................................................................. 21 3 5 0.20 1 1 0
.................................................AGGTAAGAGGAAAGGTATAAT.................................................................................. 21 3 18 0.06 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:3362737-3362888 - dps_223 AAATATTAGCAGGTGGAAGGTTGGGGGAATAACATTAGCGATTATA-CAAGCCATTCTCCTATCCATATTCA--TAAGGGGGATGGGATGGGA----TGGGAATGGGAATCAAGATGCTAATCCCCAGGTTCCAGGCTGCCAGGCGTCCAGGTCTCGAG
droPer2 scaffold_9:1378075-1378108 + GGA-------------------------------------------------------------------------------ATGGGATGGGA----TTGGGATGGGGATGGGGATG------------------------------------------
droMoj3 scaffold_6359:1625998-1626035 - GACTACTGGAAGGGGG------GGGGGAATAACATTAGCAATTA-------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414425:241891-241975 - GAC------------------TGGGGGAATAACATTAGCAATTAAAGCGGGCTATTTT-------ACATTTAGCTA---GGGATGGCAAGGGAATACTTGGAATGATGATCGA----------------------------------------------
droEug1 scf7180000409110:954609-954640 - GAC------------------TGGGGGAATAACATTAGCAATTAAA----GCCA---------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAATATTAGCAGGTGGAAGGTTGGGGGAATAACATTAGCGATTATA-CAAGCCATTCTCCTATCCATATTCA--TAAGGGGGATGGGATGGGA----TGGGAATGGGAATCAAGATGCTAATCCCCAGGTTCCAGGCTGCCAGGCGTCCAGGTCTCGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................ATGGGATGGGA----TGGGAATGGGA...................................................22313.6741017106012050
..................................................................................ATGGGATGGGA----TGGGAATGGG....................................................2155.602807104211030
...................................................................................TGGGATGGGA----TGGGAATGGG....................................................2052.40120310102050
...................................................................................TGGGATGGGA----TGGGAATGGGA...................................................2132.3370500001010
...................................................................................TGGGATGGGA----TGGGAATGG.....................................................1950.4020200000000
....................................................................................GGGATGGGA----TGGGAATGGGA...................................................2040.2510100000000
...................................................................................TGGGATGGGA----TGGGAATGGGAT..................................................2240.2510010000000
.............................................................................GGGGGATGGGATGGGA----TGGGA.........................................................2140.2510100000000
..............................................................................GGGGATGGGATGGGA----TGGG..........................................................19200.2040200002000
..................................................................................ATGGGATGGGA----TGGGAATGG.....................................................2050.2010000000010
..................................................................................ATGGGATGGGA----TGGGAATGGGC...................................................2260.1710000001000
..............................................................................GGGGATGGGATGGGA----TGGGA.........................................................20170.0610000001000
droPer2
GGA-------------------------------------------------------------------------------ATGGGATGGGA----TTGGGATGGGGATGGGGATG------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droMoj3
GACTACTGGAAGGGGG------GGGGGAATAACATTAGCAATTA-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droTak1
GAC------------------TGGGGGAATAACATTAGCAATTAAAGCGGGCTATTTT-------ACATTTAGCTA---GGGATGGCAAGGGAATACTTGGAATGATGATCGA----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GAC------------------TGGGGGAATAACATTAGCAATTAAA----GCCA---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 03:10 PM