ID:

dps_2177

 Coordinate:

Unknown_group_669:7632-7782 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.2 -19.5 -19.4 -19.3

Flybase annnotation

CDS [Dpse\GA23980-cds]; exon [dpse_GLEANR_13513:3]; intron [Dpse\GA23980-in]

No Repeatable elements found

mature
  1. Unknown_group_669:4185-4210 +
  2. dps_2177  Unknown_group_669:7649-7674 +
star
  1. dps_2177  Unknown_group_669:7716-7736 +
  2. Unknown_group_669:14379-14399 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACATAAAATATAGCCTACTATGTCGTATAATATTTTTGTTTTTATCCTACTATGTACTCGAAAACATACCTCATGGAGAAAAGCAGTCACTGCCTGAAGTGTCAGACGAGATACTCGTTTGGATTTCACAATCACGGACGAGCACTACATAATACACACTACACATCTAGTTTAACATTTAACTTCTCCCCCCATCCAAGTGGGCACTTCGTGGCAACCGGCACGTGATCGAGGACCTCACCCTAGACGA
*******************************************************************((........((....((.(((..((..((((((.(((((((((...)))))))))))))))....))..)))..)).))......))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
.....................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGACG. 21 0 6 0.83 5 4 1 0
.....................................................................................................................................................................................................................................TCGAGGACCGCACCCTAGACG. 21 1 6 0.50 3 3 0 0
...................................................................TACCTCATGGAGAAAAGCAGTCACTG.............................................................................................................................................................. 26 0 2 0.50 1 1 0 0
......................................................................................................................................ACGGACGAGCACTACATAATA................................................................................................ 21 0 2 0.50 1 1 0 0
.....................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGA... 19 0 6 0.33 2 2 0 0
................................................................................................................................................................................................................................CGTGATCGAGGACCTCACCCTA..... 22 0 6 0.33 2 2 0 0
.................ACTATGTCGTATAATATTTTTG.................................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0
.....................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGAC.. 20 0 6 0.33 2 1 0 1
.............................................................................................................................................................................................................................GCACGTGATCGAGGACCTCAC......... 21 0 7 0.29 2 2 0 0
............................................................................................................................................................................................................................GGCACGTGATCGAGGACCTCA.......... 21 0 8 0.25 2 2 0 0
.............................................................................................................................................................................................................................GCACGTGATCGAGGACCTCA.......... 20 0 8 0.25 2 2 0 0
.......................................................................................................................................................................................................................CAACCGGCACGTGATCGAGGACCTCA.......... 26 0 5 0.20 1 1 0 0
.........................................................................................................................................................................................................................ACCGGCACGTGATCGAGGACC............. 21 0 5 0.20 1 1 0 0
...................................................................................................................................ATCACGGACGAGCACTACATA................................................................................................... 21 0 5 0.20 1 0 1 0
.................................................................................................................................CAATCACGGACGAGCACTAC...................................................................................................... 20 0 5 0.20 1 1 0 0
........................................................................................................................................................................................................................AACCAGCACGTGATCGAGG................ 19 1 5 0.20 1 0 1 0
................................................................................................................................................................TACACATCTAGTTTAACATTTAACTT................................................................. 26 0 5 0.20 1 1 0 0
......................................................................................................................................................................................................................................CGAGGACCTCACCCTAGACG. 20 0 6 0.17 1 1 0 0
..........................................................................................CTGCCTGAAGTGTCAGACG.............................................................................................................................................. 19 0 7 0.14 1 0 1 0
...............................................................................................................ATACTCGTTTGGATTTCACAA....................................................................................................................... 21 0 7 0.14 1 1 0 0
..............................................................................................................................................................................................................ACTTCGTGGCAACCGGCACG......................... 20 0 7 0.14 1 0 1 0
....................................................................................................................................................................................................................TGGCAACCGGCACGTGATCG................... 20 0 7 0.14 1 0 1 0
..........................................................................................................................................................................................................GGGCACTTCGTGGCAACCGG............................. 20 0 7 0.14 1 0 1 0
..................................................................................................AGTGTCAGACGAGATACTCG..................................................................................................................................... 20 0 7 0.14 1 0 1 0
...............................................................................................................................................................................................................CTTCGTGGCAACCGGCACGTG....................... 21 0 7 0.14 1 1 0 0
..............................................................................................................................................................................................................ACTTCGTGGCAACCAGCACG......................... 20 1 7 0.14 1 0 1 0
.............................................................................................................................................................................................................CACTTCGTGGCAACCGGCACG......................... 21 0 7 0.14 1 0 1 0
..............................................................................................................................................................................................................................CACGTGATCGAGGACCTCA.......... 19 0 8 0.13 1 0 0 1

Anti-sense strand reads

GTGTATTTTATATCGGATGATACAGCATATTATAAAAACAAAAATAGGATGATACATGAGCTTTTGTATGGAGTACCTCTTTTCGTCAGTGACGGACTTCACAGTCTGCTCTATGAGCAAACCTAAAGTGTTAGTGCCTGCTCGTGATGTATTATGTGTGATGTGTAGATCAAATTGTAAATTGAAGAGGGGGGTAGGTTCACCCGTGAAGCACCGTTGGCCGTGCACTAGCTCCTGGAGTGGGATCTGCT
************************************************************************************************((........((....((.(((..((..((((((.(((((((((...)))))))))))))))....))..)))..)).))......))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 GSM343916
embryo
 GSM444067
head
 M022
male body		 SRR902010
ovaries
.........................................................................................................................................CTGCTCGTGATGTATTATGT.............................................................................................. 20 0 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................................................................TCGTGATGTATTATGTGTGAT......................................................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................................................................................GTGATGTGTAGATCAAATTG.......................................................................... 20 0 5 0.80 4 4 0 0 0 0 0 0
..............................................GGATGATACATGAGCTTTTGT........................................................................................................................................................................................ 21 0 4 0.75 3 3 0 0 0 0 0 0
...............................................................................................................................................................GATGTGTAGATCAAATTGTAA....................................................................... 21 0 5 0.60 3 3 0 0 0 0 0 0
.............................................................................................................................................................GTGATGTGTAGATCAAATTGT......................................................................... 21 0 5 0.60 3 2 1 0 0 0 0 0
....................................................................................GTCAGTGACGGACTTCACAGTCTGC.............................................................................................................................................. 25 0 4 0.50 2 2 0 0 0 0 0 0
............................................................................................................................................CTCGTGATGTATTATGTGTGA.......................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
...........................................ATAGGATGATACATGAGCTT............................................................................................................................................................................................ 20 0 4 0.50 2 2 0 0 0 0 0 0
...............................ATAAAAACAAAAATAGGATGATACAT.................................................................................................................................................................................................. 26 0 4 0.50 2 2 0 0 0 0 0 0
.........................................................................................................................................CTGCTCTTGATGTATTATGT.............................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................................................CGTGATGTATTATGTGTGATG........................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................CCTGCTCGTGATGTATTATG............................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0
.................................AAAAACAAAAATAGGATGATACA................................................................................................................................................................................................... 23 0 4 0.50 2 2 0 0 0 0 0 0
................................................................................................................................................................................................GGTAGGTTCACCCGTGAAGC....................................... 20 0 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................................................................................................AATTGAAGAGGGGGGTAGGTT................................................... 21 0 6 0.50 3 2 1 0 0 0 0 0
......................................................................................CAGTGACGGACTTCACAGTCT................................................................................................................................................ 21 0 7 0.43 3 3 0 0 0 0 0 0
...............................................................................................................................GTGTTAGTGCCTGCTCGTGAT....................................................................................................... 21 0 5 0.40 2 2 0 0 0 0 0 0
...............................................................................................................................GTGTTAGTGCCTGCTCGTGA........................................................................................................ 20 0 5 0.40 2 0 1 1 0 0 0 0
...............................................................................................................................................GTGATGTATTATGTGTGATG........................................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................................GATGTATTATGTGTGATGTGT..................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGCTCCTGGAGTGGGATCTG.. 20 0 6 0.33 2 0 1 0 0 0 1 0
.........................................................GAGCTTTTGTATGGAGTACCT............................................................................................................................................................................. 21 0 3 0.33 1 0 0 1 0 0 0 0
....................................................................................................................................................GTATTATGTGTGATGTGTA.................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................GGGGTAGGTTCAACCGTCAGG........................................ 21 3 3 0.33 1 0 0 0 1 0 0 0
...................................................................................CGGCAGTGACGGACTTCACAGTCT................................................................................................................................................ 24 1 4 0.25 1 1 0 0 0 0 0 0
....................................................................................GGCAGGGACGGACTTCACAGTCTGCTC............................................................................................................................................ 27 2 4 0.25 1 1 0 0 0 0 0 0
....................................................................................GTCAGTGACGGACTTCACAGTCTGGT............................................................................................................................................. 26 1 4 0.25 1 1 0 0 0 0 0 0
...........................................ATAGGATGATACATGAGCTTT........................................................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0
.......................................AAAAATAGGATGATACATGAGCT............................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0 0 0
...............................................GATGATACATGAGCTTTTGT........................................................................................................................................................................................ 20 0 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................GTTAGTGCCTGCTCGTGATGT..................................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0
...........................................................................................................................................................GTGTGATGTGTAGATCAAATT........................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................................ATAGTGCCTGCTCGTGATGTAT................................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGCCGTGCACTAGCTCCTG.............. 19 0 5 0.20 1 1 0 0 0 0 0 0
..............................................GGATGATACATGAGGTTTTGT........................................................................................................................................................................................ 21 1 5 0.20 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................CGTTGGCCGTGCACTAGCTCCT............... 22 0 5 0.20 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................CCGTTGGCCGTGCACTAGCTCCT............... 23 0 5 0.20 1 0 1 0 0 0 0 0
..........................................................................................................................................................GGTGTGATGGGTAGATCAAAT............................................................................ 21 2 5 0.20 1 0 1 0 0 0 0 0
..............................................................................................................................................................TGATGTGTAGATCAAATTG.......................................................................... 19 0 5 0.20 1 1 0 0 0 0 0 0
.................................................................................................................................GTTAGTGCCTGCTCGTGATG...................................................................................................... 20 0 5 0.20 1 0 1 0 0 0 0 0
...........................................................................................................................................................GTGTGATGTGTAGATCAAAT............................................................................ 20 0 5 0.20 1 0 1 0 0 0 0 0
...........................................................................................................................................................GTGTGATGTGTAGATCAAATTGT......................................................................... 23 0 5 0.20 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................CTAGCTCCTGGAGTGGGAT..... 19 0 6 0.17 1 0 1 0 0 0 0 0
....................................................................................................................................................................GTAGATCAAGTTGTAAATTG................................................................... 20 1 6 0.17 1 1 0 0 0 0 0 0
...................................................................................................................................................................................AATTGAAGAGGGGGGTAGGT.................................................... 20 0 6 0.17 1 1 0 0 0 0 0 0
...........................................................................................................GCTCTATGAGCAAACCTAAAGTGTT....................................................................................................................... 25 0 6 0.17 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................CCTGGAGTGGGATCTGCT 18 0 6 0.17 1 0 0 0 0 1 0 0
..............................................................................................................CTATGAGCAAACCTAAAGTGT........................................................................................................................ 21 0 6 0.17 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TCCTGGAGTGGGATCTGCT 19 0 6 0.17 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................CACTAGCTCCTGGAGTGGGAT..... 21 0 6 0.17 1 1 0 0 0 0 0 0
...................................................................................................................AGCAAACCTAAAGTGTTAGTG................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................AATGTGTGATGTGTAGATCAA.............................................................................. 21 1 6 0.17 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................AGCTCCTGGAGTGGGATCTGC. 21 0 6 0.17 1 0 1 0 0 0 0 0
..........................................................................................GACGGACTTCACAGTCTGCTC............................................................................................................................................ 21 0 7 0.14 1 1 0 0 0 0 0 0
..............................................................................................GACTTCACAGTCTGCTCTAT......................................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GTGAAGCACCATTGGCCGCGC......................... 21 2 7 0.14 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................CCGTGAAGCACCGTTGGCCGT........................... 21 0 7 0.14 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................CCGTGAAGCACCATTGGCCGC........................... 21 2 7 0.14 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AGCACCGTTGGCCGTGCACTA..................... 21 0 7 0.14 1 0 1 0 0 0 0 0
.............................................................................................................................................TAGAGATGTATTATGTTTGAT......................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 1
..................................................................................................................................................................GTATCGATCATATTGTAAATT.................................................................... 21 3 11 0.09 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................GGGTAGGTTCACCCGTAACT........................................ 20 3 12 0.08 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_669:7582-7832 + dps_2177 CACATAAAATATAGCCTACTATGTCGTATAATATTT---TTGTTTTTATCCTACTATGTACTCGAAAACATACCTCATGGAGAAAAGCAGTCACTGCCTGAAGTGTCAGACGAGATACTCGTTTGGATTTC----------ACAAT-CA---------CGGACGAGCACTACATAATACACACTACACATCTAGTTTAACATTTAACTTCTCCCCCCATCCAAGTGGGCACTTCGTGGCAACCGGCACGTGATCGAGGACCTCACCCTAGACGA
droPer2 scaffold_2007:1736-1996 - CACATAAAATATAGCCTACTATGTCGTATAATATTT---TTGTTTTTATCCTACTATGTACTCGAAAACATATCTCATGGAGAAAAGCAGTCACTGCCTGAAGTGTCAGACGAGATACTCGTTTGGATTTCACAATCACACACAAT-CA---------CAGACGAGCACTACATACTACACACTACACATCTAGTTTAACATTTTACTTCTCCCCCAATCGAAGGGGGCACTTCGTGGCAACCGGCACGTGATCGAGGACCTCACCCTAGACGA
droWil2 scf2_1100000004542:6133-6184 - TTTTTT-------------------------------------TATTTTCTTTCTACGCACCAAAAACCAAACCAAATGACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AAGCA------------------------------
droVir3 scaffold_12884:30186-30243 + CATATTAAGATCAGACAACTATATCATATAGTATAT---ATACTGTAATACTAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC------------------------------
droMoj3 scaffold_6496:21645193-21645255 - ATATT------------------------------T---TCATTTTTATTCTCATATTTTCTCAAAGATATGCCTG------------------------------------------------------------------------------------------------AAAATATAGAAT----------------------------------------------------AAAGAAAT------------------------------
droGri2 scaffold_14906:11519754-11519820 - GACAAGAAACCGAAGCTGA------------------------------------------------------------------------------------------------------------TCTT----------GCAAT-GG---------CCAACACACACTACACAGTACACAGTACACACAC-------------------------------------------------AGT------------------------------
droAna3 scaffold_13266:19774280-19774325 - AATATAAAATATAAACAACTTTTTATTTGAATATTT---TTTTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------
droBip1 scf7180000394712:33639-33695 - TATATTAAACAATTCCTACTAGGTCCTCCAATTTTA---TTTTTTTTGTCGCACTGTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302276:189992-190040 - TATAC-------------------CCTAGAATATTC---TAGTTTTTATTTGAATATTTATTCGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------
droFic1 scf7180000454137:4349-4383 + TTT------------------------------------TTATTTTTATTTTATCGTGCACTTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT------------------------------
droEle1 scf7180000489969:616-687 + AATATA-CTAATATACTAATATACT---TAATATACTTAATATACTTAATATACTA-----------------------------------------------------------------------------------------------------------A------------TATACTTAATATACT-------------------------------------------------TAAT------------------------------
droRho1 scf7180000777533:22-64 + ATA-TTAAAAATATACT---ATAACATATAATATTC---TTATTTTTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302386:35543-35623 - CTACCT-GTTACATACT---TTCC--------------------------------------G-------------------------------------------------------------------------------------------------------------------------ACAAATCTAGTATACCCTTTACTTTACCCTCTTATCGAGGTAAAAATATAGTGACGACCG------------------------------
droTak1 scf7180000415818:116242-116332 - TTGTGG-AGAATA-------------------------------------------------------------------------GCAGTTACGGCCTGAAGCGCAACCT-GGAGTTCA-------TTGT----------GGAGTTGGCCAAGAGCACGGGTGTTCACTTTA------------TA------------------------------------GCGG-------------GCAC------------------------------
droEug1 scf7180000406000:32870-32913 + TGTATGAAATATGTATAAATATGTTATAGATTAATT---TTATTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------
droYak3 2L:20421649-20421723 + CACATTAATTTTATTTTATGTTTTTACATTATAT-------ACTACTATTCTAAAATAAAATCTGAAAAATAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACA------------------------------
droEre2 scaffold_4895:165130-165161 + CGAGT-------------------CGTACAATTTTT---TTCTTTTTATCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CACATAAAATATAGCCTACTATGTCGTATAATATTT---TTGTTTTTATCCTACTATGTACTCGAAAACATACCTCATGGAGAAAAGCAGTCACTGCCTGAAGTGTCAGACGAGATACTCGTTTGGATTTC----------ACAAT-CA---------CGGACGAGCACTACATAATACACACTACACATCTAGTTTAACATTTAACTTCTCCCCCCATCCAAGTGGGCACTTCGTGGCAACCGGCACGTGATCGAGGACCTCACCCTAGACGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGACG.2160.8350000001040
......................................................................TACCTCATGGAGAAAAGCAGTCACTG..................................................................................................................................................................................2620.5010000000010
....................................................................................................................................................A---------CGGACGAGCACTACATAATA................................................................................................2120.5010000000010
............................................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGA...1960.3320000000020
.......................................................................................................................................................................................................................................................CGTGATCGAGGACCTCACCCTA.....2260.3320000000020
.................ACTATGTCGTATAATATTT---TTG........................................................................................................................................................................................................................................2230.3310000000010
............................................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGAC..2060.3320100000010
....................................................................................................................................................................................................................................................GCACGTGATCGAGGACCTCAC.........2170.2920000000020
...................................................................................................................................................................................................................................................GGCACGTGATCGAGGACCTCA..........2180.2520000000020
....................................................................................................................................................................................................................................................GCACGTGATCGAGGACCTCA..........2080.2520000000020
..............................................................................................................................................................................................................................................CAACCGGCACGTGATCGAGGACCTCA..........2650.2010000000010
................................................................................................................................................................................................................................................ACCGGCACGTGATCGAGGACC.............2150.2010000000010
................................................................................................................................................AT-CA---------CGGACGAGCACTACATA...................................................................................................2150.2010000001000
..............................................................................................................................................CAAT-CA---------CGGACGAGCACTAC......................................................................................................2050.2010000000010
.......................................................................................................................................................................................TACACATCTAGTTTAACATTTAACTT.................................................................2650.2010000000010
.............................................................................................................................................................................................................................................................CGAGGACCTCACCCTAGACG.2060.1710000000010
.............................................................................................CTGCCTGAAGTGTCAGACG..................................................................................................................................................................1970.1410000001000
..................................................................................................................ATACTCGTTTGGATTTC----------ACAA.................................................................................................................................2170.1410000000010
.....................................................................................................................................................................................................................................ACTTCGTGGCAACCGGCACG.........................2070.1410000001000
...........................................................................................................................................................................................................................................TGGCAACCGGCACGTGATCG...................2070.1410000001000
.................................................................................................................................................................................................................................GGGCACTTCGTGGCAACCGG.............................2070.1410000001000
.....................................................................................................AGTGTCAGACGAGATACTCG.........................................................................................................................................................2070.1410000001000
......................................................................................................................................................................................................................................CTTCGTGGCAACCGGCACGTG.......................2170.1410000000010
....................................................................................................................................................................................................................................CACTTCGTGGCAACCGGCACG.........................2170.1410000001000
.....................................................................................................................................................................................................................................................CACGTGATCGAGGACCTCA..........1980.1310100000000
droPer2
CACATAAAATATAGCCTACTATGTCGTATAATATTT---TTGTTTTTATCCTACTATGTACTCGAAAACATATCTCATGGAGAAAAGCAGTCACTGCCTGAAGTGTCAGACGAGATACTCGTTTGGATTTCACAATCACACACAAT-CA---------CAGACGAGCACTACATACTACACACTACACATCTAGTTTAACATTTTACTTCTCCCCCAATCGAAGGGGGCACTTCGTGGCAACCGGCACGTGATCGAGGACCTCACCCTAGACGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................GCACGTGATCGAGGACCTCA..........20120.172000002
.....................................................................................................................................................................................................................CCCAATCGAAGGGGGCACTTCG.......................................2290.111000001
...............CTACTATGTCGTATAATATTT---...........................................................................................................................................................................................................................................21100.101000001
............................................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGA...19110.091010000
............................................................................................................................................................................................................................................................TCGAGGACCTCACCCTAGACG.21110.091000001
......................................................................................................................................................................................................................................................ACGTGATCGAGGACCTCACCC.......21110.091000001
.............................................................................................................................................................................................................................................................CGAGGACCTCACCCTAGACGA21110.091010000
..............................................................................................................................................................................................................................................CAACCGGCACGTGATCGAGG................20110.091000001
..............................................................................................................................................................CAGACGAGCACTACATACTAC...............................................................................................21110.091000001
.............................................................................................................................................................................................................................................GCAACCGGCACGTGATCGAG.................20110.091000001
....................................................................................................................................................................................................................................................GCACGTGATCGAGGACCTCAC.........21120.081000001
droWil2
TTTTTT-------------------------------------TATTTTCTTTCTACGCACCAAAAACCAAACCAAATGACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AAGCA------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................TTCTTTCTACGCACCAAAAACCAAAC.........................................................................................................................................................................................................26100.10101000
........................................................CGCACCAAAAACCAAACCAAATGACG................................................................................................................................................................................................26100.10100010
..............................................TTTCTTTCTACGCACCAAAAACCAAA..........................................................................................................................................................................................................26100.10100010
...TTT-------------------------------------TATTTTCTTTCTACGCACCAAAAAC..............................................................................................................................................................................................................28100.10100010
.....T-------------------------------------TATTTTCTTTCTACGCACCAAA.................................................................................................................................................................................................................23100.10101000
.....................................................................AAACCAAATGACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AAGCA------------------------------20100.10100010
...............................................TTCTTTCTACGCACCAAAAACCAAACCA.......................................................................................................................................................................................................28100.10101000
..........................................................CACCAAAAACCAAACCAAATGACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------A..................................27100.10100010
.............................................................CAAAAACCAAACCAAATGACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------A..................................24100.10100010
droVir3
CATATTAAGATCAGACAACTATATCATATAGTATAT---ATACTGTAATACTAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGC------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....TAAGATCAGACAACTATATCATAT.....................................................................................................................................................................................................................................................2460.171000000000000000000000000001000000000000000000000000000000000000
droMoj3
ATATT------------------------------T---TCATTTTTATTCTCATATTTTCTCAAAGATATGCCTG------------------------------------------------------------------------------------------------AAAATATAGAAT----------------------------------------------------AAAGAAAT------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GACAAGAAACCGAAGCTGA------------------------------------------------------------------------------------------------------------TCTT----------GCAAT-GG---------CCAACACACACTACACAGTACACAGTACACACAC-------------------------------------------------AGT------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AATATAAAATATAAACAACTTTTTATTTGAATATTT---TTTTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATATTAAACAATTCCTACTAGGTCCTCCAATTTTA---TTTTTTTTGTCGCACTGTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TATAC-------------------CCTAGAATATTC---TAGTTTTTATTTGAATATTTATTCGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTT------------------------------------TTATTTTTATTTTATCGTGCACTTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AATATA-CTAATATACTAATATACT---TAATATACTTAATATACTTAATATACTA-----------------------------------------------------------------------------------------------------------A------------TATACTTAATATACT-------------------------------------------------TAAT------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATA-TTAAAAATATACT---ATAACATATAATATTC---TTATTTTTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTACCT-GTTACATACT---TTCC--------------------------------------G-------------------------------------------------------------------------------------------------------------------------ACAAATCTAGTATACCCTTTACTTTACCCTCTTATCGAGGTAAAAATATAGTGACGACCG------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTGTGG-AGAATA-------------------------------------------------------------------------GCAGTTACGGCCTGAAGCGCAACCT-GGAGTTCA-------TTGT----------GGAGTTGGCCAAGAGCACGGGTGTTCACTTTA------------TA------------------------------------GCGG-------------GCAC------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGTATGAAATATGTATAAATATGTTATAGATTAATT---TTATTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
CACATTAATTTTATTTTATGTTTTTACATTATAT-------ACTACTATTCTAAAATAAAATCTGAAAAATAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACA------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CGAGT-------------------CGTACAATTTTT---TTCTTTTTATCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 03:27 AM