ID:

dps_217

 Coordinate:

2:26016040-26016085 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.1 -30.9 -30.9

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2:19547940-19547957 -
  2. dps_217  2:26016041-26016058 -
  3. Unknown_group_598:307-324 +
star

Sense Strand Reads

ACTCGAAGATCGGGCATGCCTGATGTTATTAGATTTTGGGAAAATGGCAGCCACTGGCAGCCAACCCAAAAGTTTTAGTGGGTGGGTGGGTGGCCATGCCCCCAAGGCGTTATGACGTGAGGCACGGAAACATTTCAGTTTGCTTG
***********************************(((((.....((((((((((.((..(((.((((..........))))))))).))))))..)))))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M062
head
 M059
embryo
 GSM343916
embryo
.............................................................................GTGGGTGGGTGGGTGGCC................................................... 18 0 3 38.67 116 79 19 12 6 0 0
.................................................................................................................GACGTGGGGAACTGAAACAT............. 20 3 5 8.40 42 25 17 0 0 0 0
.............................................................................GTGGGTGGGTGGGTGGCCG.................................................. 19 1 11 2.91 32 26 5 1 0 0 0
............................................................................AGTGGGTGGGTGGGTGGCC................................................... 19 0 2 0.50 1 0 1 0 0 0 0
......................................................................AGTTTTAGTGGGTGGGTGG......................................................... 19 0 2 0.50 1 1 0 0 0 0 0
.............................................................................GTGGGTGGGTGGGTGGCCA.................................................. 19 0 2 0.50 1 0 0 1 0 0 0
.............................................................................GCGGGTGGGTGGGTGGCC................................................... 18 1 7 0.43 3 1 0 0 1 1 0
.............................................................................GGGGGTGGGTGGGTGGCC................................................... 18 1 11 0.18 2 0 0 0 2 0 0
..............................................................................TGGGTGGGTGGGTGGCCG.................................................. 18 1 17 0.18 3 3 0 0 0 0 0
.............................................................................GTGCGTGGGTGGGTGGCC................................................... 18 1 8 0.13 1 1 0 0 0 0 0
.............................................................................GTGGTTGGGTGGGTGGCC................................................... 18 1 10 0.10 1 1 0 0 0 0 0
.............................................................................GTGGGTGGGTGGGTGGAC................................................... 18 1 18 0.06 1 0 1 0 0 0 0
.......................................................................GTTTTATTGGGTGAGTAGG........................................................ 19 3 20 0.05 1 0 0 0 0 0 1
.........................................................................TTTTGTGGGTGGGTGCATGGC.................................................... 21 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TGAGCTTCTAGCCCGTACGGACTACAATAATCTAAAACCCTTTTACCGTCGGTGACCGTCGGTTGGGTTTTCAAAATCACCCACCCACCCACCGGTACGGGGGTTCCGCAATACTGCACTCCGTGCCTTTGTAAAGTCAAACGAAC
***********************************(((((.....((((((((((.((..(((.((((..........))))))))).))))))..)))))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
........................................................................................................................CCGGGCCTTTGTAAAGTC........ 18 1 2 0.50 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:26015990-26016135 - dps_217 ACTCGAAGATCGGGCATGCCTGATGTTATTAGATTTTGG-GAAAATGGCAGCCACTGGCAGCCAACCCAAAAGTTTTAGTGGGTGGGTGGGTGGCCATGCCCCCAAGGCGTTATGACG----------------TGAGGCACGGAAACATTTCAGTTTGCTTG
droPer2 scaffold_6:1348003-1348155 - ACTTGAGGATCGGGCATGCCTGATGTTATTAGATTTTGGAGAAAATGGC----------AGCCAACCCAAAACTTGTAGTGGGTGGGTGGGTGGCCATGCCCCCAAGGCGTTATGACGTGTTGTCATTGCGGCGTGAGGCACGGAAACATTTCAGTTTGCTTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACTCGAAGATCGGGCATGCCTGATGTTATTAGATTTTGG-GAAAATGGCAGCCACTGGCAGCCAACCCAAAAGTTTTAGTGGGTGGGTGGGTGGCCATGCCCCCAAGGCGTTATGACG----------------TGAGGCACGGAAACATTTCAGTTTGCTTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................GTGGGTGGGTGGGTGGCC...................................................................18338.671160790601219000
..............................................................................GTGGGTGGGTGGGTGGCCG..................................................................19112.913202600015000
.............................................................................AGTGGGTGGGTGGGTGGCC...................................................................1920.5010000001000
.......................................................................AGTTTTAGTGGGTGGGTGG.........................................................................1920.5010100000000
..............................................................................GTGGGTGGGTGGGTGGCCA..................................................................1920.5010000010000
...............................................................................TGGGTGGGTGGGTGGCCG..................................................................18170.1830300000000
droPer2
ACTTGAGGATCGGGCATGCCTGATGTTATTAGATTTTGGAGAAAATGGC----------AGCCAACCCAAAACTTGTAGTGGGTGGGTGGGTGGCCATGCCCCCAAGGCGTTATGACGTGTTGTCATTGCGGCGTGAGGCACGGAAACATTTCAGTTTGCTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................GTGGGTGGGTGGGTGGCC...................................................................1826.50130100111

Generated: 05/15/2015 at 03:09 PM