ID:

dps_2102

 Coordinate:

Unknown_group_6:39329-39498 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.5 -20.4 -20.3 -20.1

Flybase annnotation

exon [dpse_GLEANR_13584:1]; CDS [Dpse\GA24022-cds]; CDS [Dpse\GA24022-cds]; exon [dpse_GLEANR_13584:2]; intron [Dpse\GA24022-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
BEL-1_DPer-I-intLTRPao+
mature
  1. dps_2101  Unknown_group_6:32129-32153 +
  2. Unknown_group_6:35901-35925 +
  3. dps_2102  Unknown_group_6:39466-39490 +
  4. dps_2190  Unknown_group_679:298-322 -
  5. Unknown_group_679:4032-4056 -
star

Sense Strand Reads

------############################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAGCCATGGAGGCTGGCCATATCTACCAAACTGCTGAAGGGAAGCAGAGGTAAGCGAAACGAAACGGCTTGTGTTGGTGTGAGAATAGAAAAAAAAGACGAACGATTTTTATAAATTTTTTGTTGTCAAATAATTAATTAATTAAATCAAAATTAGATCAAAATCGTCCCATTCACAGCTCCGTACTAATACTTCTTCGACTTCTCTACTCCACCATAGTTCCATCCTCATCTGGACATGGCCCCACGGATCCGCCTCAACCGCACCAC
**************************************************..................((.....(((((.(((..((((.....(((.(((((((((((.((.....(((((.........................)))))....)).)))))))).............................))).))).)))))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 SRR902010
ovaries
 M059
embryo
 V112
male body
.........................................................................................................................................................................................................................TAGTTCCATCCTCATCTGGACATGGCC.......................... 27 0 3 0.67 2 2 0 0 0 0
...........................................................................................................................................................................................TAATACTTCTTCGACTTCTCTACTC.......................................................... 25 0 5 0.60 3 3 0 0 0 0
...........................................................................TGATGTGGGAATAGGAAAAAA.............................................................................................................................................................................. 21 3 20 0.60 12 11 0 0 0 1
...........................................................................TGATGTGGGAATAGGAAAAAAA............................................................................................................................................................................. 22 3 12 0.50 6 6 0 0 0 0
......................TCTACCAAACTGCTGAAGGGAAGC................................................................................................................................................................................................................................ 24 0 4 0.50 2 2 0 0 0 0
...........................................................................................................................................................................................TAATACTTCTTCGACTTCTCTACTCCA........................................................ 27 0 5 0.40 2 2 0 0 0 0
.........................................................................................................................................................................................................................................TGGACATGGCCCCACGGATCCGCCT............ 25 0 5 0.40 2 2 0 0 0 0
...........................................................................................................................................................................................TAATACTTCTTCGACTTCTCTACT........................................................... 24 0 5 0.40 2 2 0 0 0 0
.............................................................................................................................................................................................................................TCCATCCTCATCTGGACATGGCCCCA....................... 26 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................................................TTCCATCCTCATCTGGACATGGCC.......................... 24 0 3 0.33 1 1 0 0 0 0
.............................................................................................................................................................................................................................TCCATCCTCATCTGGACATGGCCC......................... 24 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................................TAGTTCCATCCTCATCTGGACATGG............................ 25 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................................TAGTTCCATCCTCATCTGGACATGGCCC......................... 28 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................TAATACTTCTTCGACTTCTCTA............................................................. 22 0 16 0.31 5 4 0 0 1 0
.....................................................................................................................................................................................CCGTACTAATACTTCTTCGACTT.................................................................. 23 0 14 0.29 4 3 1 0 0 0
.............................................................................................................................................................................TCACAGCTCCGTACTAATACTTCTT........................................................................ 25 0 12 0.25 3 0 0 3 0 0
.....................ATCTACCAAACTGCTGGAGGGA................................................................................................................................................................................................................................... 22 1 4 0.25 1 0 1 0 0 0
.....................................................................................................................................................................................CCGTACTAATACTTCTTCGACTTCTC............................................................... 26 0 12 0.25 3 3 0 0 0 0
.............................................................................................................................................................................TCACAGCTCCGTACTAATACTTC.......................................................................... 23 0 12 0.25 3 2 0 0 1 0
....................................................................................................................................................................................................................................TCATCTGGACATGGCCCCACGGATC................. 25 0 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................................................................................TCATCTGGACATGGCCCCACGGAT.................. 24 0 5 0.20 1 1 0 0 0 0
.................................................................................................................................................................................................................................TCCTCATCTGGACATGGCCCCACGG.................... 25 0 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................................................................................TCATCTGGACATGGCCCCACGGATCCGC.............. 28 0 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................................................................................TCATCTGGACATGGCCCCAC...................... 20 0 5 0.20 1 1 0 0 0 0
...........................................................................................................................................................................................TAATACTTCTTCGACTTCTCT.............................................................. 21 0 16 0.19 3 3 0 0 0 0
................................................................................................................................................................................CAGCTCCGTACTAATACTTCTTCGACT................................................................... 27 0 12 0.17 2 1 0 0 1 0
......................................................................................................................................................................GTCCCATTCACAGCTCCGTA.................................................................................... 20 0 12 0.17 2 2 0 0 0 0
.......................................................................................................................................................................TCCCATTCACAGCTCCGTAC................................................................................... 20 0 12 0.17 2 2 0 0 0 0
.......................................................................................................................................................................................GTACTAATACTTCTTCGACTTCTC............................................................... 24 0 12 0.17 2 2 0 0 0 0
....................................................................................................................................................................................TCCGTACTAATACTTCTTCGACT................................................................... 23 0 14 0.14 2 0 0 2 0 0
...........................................................................TGATGTGGGAATAGAAAAAAA.............................................................................................................................................................................. 21 2 14 0.14 2 2 0 0 0 0
...............GGCCATATCTACCAAAGC............................................................................................................................................................................................................................................. 18 2 7 0.14 1 1 0 0 0 0
............................................................................................................................................AATTAAATCTAAATTAGAAGAAA........................................................................................................... 23 3 9 0.11 1 1 0 0 0 0
.......................................................................................................................................TTATTAATGAAATAAAAATTAGA................................................................................................................ 23 3 9 0.11 1 1 0 0 0 0
...........................................................................TGATGTGGGAATAGAAAAAAAA............................................................................................................................................................................. 22 2 9 0.11 1 1 0 0 0 0
............................................................................GATGTGGGAATAGAAAAAAAATA........................................................................................................................................................................... 23 3 9 0.11 1 1 0 0 0 0
.............................................................................................................................................................................TCACAGCTCCGTACTAATACT............................................................................ 21 0 12 0.08 1 1 0 0 0 0
......................................................................................................................................................................GTCCCATTCACAGCTCCGTAC................................................................................... 21 0 12 0.08 1 1 0 0 0 0
......................................................................................................................................................................GTCCCATTCACAGCTCCGTACA.................................................................................. 22 1 12 0.08 1 1 0 0 0 0
....................................................................................................................................................................................TCCGTACTAATACTTCTTCGACTTCTC............................................................... 27 0 12 0.08 1 1 0 0 0 0
...........................................................................TGATGTGAGAATAGAAAAAA............................................................................................................................................................................... 20 1 12 0.08 1 0 1 0 0 0
....................................................................................................................................................................................TCCGTACTAATACTTCTTCGACTTC................................................................. 25 0 12 0.08 1 1 0 0 0 0
.....................................................................................................................................................................................CCGTACTAATACTTCTTCGACTTC................................................................. 24 0 12 0.08 1 1 0 0 0 0
..............................................................................................................................................................................CACAGCTCCGTACTAATACTTCTTCGACT................................................................... 29 0 12 0.08 1 1 0 0 0 0
...........................................................................................................................................................................................TAATACTTCTTCGACTTCTCTATTCCAC....................................................... 28 1 13 0.08 1 1 0 0 0 0
...................................................................................................................................................................................CTCCGTACTAATACTTCTTCGACT................................................................... 24 0 13 0.08 1 1 0 0 0 0
.....................................................................................................................................................................................CCGTACTAATACTTCTTCGACT................................................................... 22 0 14 0.07 1 0 0 0 1 0
......................................................................................................................................................................................CGTACTAATACTTCTTCGACTT.................................................................. 22 0 14 0.07 1 1 0 0 0 0
.....................ATTTACCACACTGTTGAAGG..................................................................................................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0 0
..............................................................................TGTGAGGAGAGAAAAAAAA............................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TCTCGGTACCTCCGACCGGTATAGATGGTTTGACGACTTCCCTTCGTCTCCATTCGCTTTGCTTTGCCGAACACAACCACACTCTTATCTTTTTTTTCTGCTTGCTAAAAATATTTAAAAAACAACAGTTTATTAATTAATTAATTTAGTTTTAATCTAGTTTTAGCAGGGTAAGTGTCGAGGCATGATTATGAAGAAGCTGAAGAGATGAGGTGGTATCAAGGTAGGAGTAGACCTGTACCGGGGTGCCTAGGCGGAGTTGGCGTGGTG
**************************************************..................((.....(((((.(((..((((.....(((.(((((((((((.((.....(((((.........................)))))....)).)))))))).............................))).))).)))))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 V112
male body		 GSM343916
embryo
 SRR902012
CNS imaginal disc
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGAGAT............................................................. 26 0 12 34.50 414 229 122 31 27 2 3 0
..........................................................................................................................................................................................GATTATGAAGAAGCTGAAGAGAT............................................................. 23 0 16 13.69 219 63 125 23 3 2 2 1
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGCTGAA.................................................................. 26 0 13 10.15 132 121 0 0 8 1 2 0
............................................................................................................................................................................AAGTGTCGAGGCATGATTATGAAGA......................................................................... 25 0 12 7.67 92 76 14 0 1 0 1 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGCTGAAG................................................................. 27 0 11 6.18 68 62 0 0 5 1 0 0
.............................................................................................................................................................................AGTGTCGAGGCATGATTATGAAGA......................................................................... 24 0 12 5.25 63 61 0 0 1 1 0 0
........................................................................................................................................................................................ATGATTATGAAGAAGCTGAAGAGAT............................................................. 25 0 12 3.33 40 30 6 3 1 0 0 0
..............................................................................................................................................................................GTGTCGAGGCATGATTATGAAGA......................................................................... 23 0 12 2.92 35 35 0 0 0 0 0 0
....................................................................................................................................................................................AGGCATGATTATGAAGAAGCTGAAG................................................................. 25 0 12 2.75 33 32 0 0 1 0 0 0
...................................................................................................................................................................................GAGGCATGATTATGAAGAAGCTGAA.................................................................. 25 0 13 2.38 31 30 0 0 1 0 0 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCATGATTAT.............................................................................. 25 0 12 2.17 26 18 2 1 0 4 1 0
.........................................................................................................................................................................................TGATTATGAAGAAGCTGAAGAGAT............................................................. 24 0 16 2.06 33 27 4 2 0 0 0 0
....................................................................................................................................................................................AGGCATGATTATGAAGAAGCTGAA.................................................................. 24 0 14 1.93 27 27 0 0 0 0 0 0
...............................................................................................................................................................................TGTCGAGGCATGATTATGAAGA......................................................................... 22 0 12 1.92 23 23 0 0 0 0 0 0
........................................................................................................................................................................GGGTAAGTGTCGAGGCATGATTAT.............................................................................. 24 0 12 1.83 22 14 4 0 0 4 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGAGA.............................................................. 25 0 12 1.83 22 21 0 1 0 0 0 0
.................................................................................................................................................................................TCGAGGCATGATTATGAAGAAGCTGAA.................................................................. 27 0 13 1.77 23 18 0 0 5 0 0 0
................................................................................................................................................................................GTCGAGGCATGATTATGAAGA......................................................................... 21 0 12 1.75 21 21 0 0 0 0 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGATTAT.............................................................................. 23 0 12 1.75 21 15 0 2 0 3 1 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCATGATTA............................................................................... 24 0 12 1.67 20 19 0 0 0 1 0 0
................................................................................................................................................................................GTCGAGGCATGATTATGAAGAAGCTGAA.................................................................. 28 0 12 1.67 20 20 0 0 0 0 0 0
........................................................................................................................................................................GGGTAAGTGTCGAGGCATGATTA............................................................................... 23 0 12 1.58 19 17 0 0 0 2 0 0
................................................................................................................................................................................GTCGAGGCATGATTATGAAGAAGCT..................................................................... 25 0 12 1.33 16 16 0 0 0 0 0 0
........................................................................................................................................................................................................TGAAGCGATGGGGTGGTATT.................................................. 20 3 5 1.20 6 1 0 0 0 5 0 0
...................................................................................................................................................................................GAGGCATGATTATGAAGAAGCTGAAG................................................................. 26 0 11 1.09 12 12 0 0 0 0 0 0
............................................................................................................................................................................................................GAGATGAGGTGGTATCAAGGTAG........................................... 23 0 3 1.00 3 2 0 0 0 1 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGATTA............................................................................... 22 0 12 1.00 12 10 0 0 0 2 0 0
.......................................................................................................................................................................................................CTGAAGCGATGGGGTGGTATT.................................................. 21 3 3 1.00 3 3 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGCTGA................................................................... 25 0 13 0.92 12 11 0 0 0 0 1 0
......................................................................................................................................................................................ACATGATTATGAAGAAGCTGAAGAGAT............................................................. 27 1 12 0.92 11 5 5 0 1 0 0 0
............................................................................................................................................................................AAGTGTCGAGGCATGATTATGAAG.......................................................................... 24 0 12 0.92 11 8 3 0 0 0 0 0
...........................................................................................................................................................................AAAGTGTCGAGGCATGATTATGAAGA......................................................................... 26 1 12 0.92 11 9 0 0 0 2 0 0
...........................................................................................................................................................................TAAGTGTCGAGGCATGATTATGAAGA......................................................................... 26 0 12 0.75 9 8 0 0 0 1 0 0
......................................................................................................................................................................CAGGGTAAGTGTCGAGGCAT.................................................................................... 20 0 12 0.75 9 2 5 1 0 0 1 0
.....................................................................................................................................................................................GGCATGATTATGAAGAAGCTGAA.................................................................. 23 0 14 0.71 10 10 0 0 0 0 0 0
.........................................................................................................................................................................................AGATTATGAAGAAGCTGAAGAGAT............................................................. 24 1 16 0.69 11 3 7 0 1 0 0 0
..........................................................................................................................................................................................................................TCAAGGTTGGAGTAGTCCT................................. 19 2 3 0.67 2 2 0 0 0 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGGCATGATTATGAAGA......................................................................... 27 0 12 0.67 8 8 0 0 0 0 0 0
.......................................................................................................................................................................................AATGATTATGAAGAAGCTGAAGAGAT............................................................. 26 1 12 0.67 8 8 0 0 0 0 0 0
.....................................................................................................................................................................................GGCATGATTATGAAGAAGCTGAAG................................................................. 24 0 12 0.67 8 7 0 0 0 1 0 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCATGAT................................................................................. 22 0 12 0.67 8 2 4 0 0 1 1 0
....................................................................................................................................................................................AGGCATGATTATGAAGAAGCTGAAGA................................................................ 26 0 12 0.67 8 6 2 0 0 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGGCATGATTAT.............................................................................. 22 0 12 0.67 8 5 1 0 0 2 0 0
...............................................................................................TTCTGCTTGCTAAAAATAT............................................................................................................................................................ 19 0 3 0.67 2 0 2 0 0 0 0 0
........................................................................................................................................................................GGGTAAGTGTCGAGGCAT.................................................................................... 18 0 12 0.58 7 1 5 1 0 0 0 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCATGATT................................................................................ 23 0 12 0.58 7 4 2 0 0 0 1 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGATT................................................................................ 21 0 12 0.58 7 5 0 2 0 0 0 0
........................................................................................................................................................................GGGTAAGTGTCGAGGCATGAT................................................................................. 21 0 12 0.58 7 1 4 2 0 0 0 0
......................................................................................................................................................................CAGGGTAAGTGTCGAGGCATGATT................................................................................ 24 0 12 0.58 7 3 3 0 1 0 0 0
............................................................................................................................................................................................TTATGAAGAAGCTGAAGAGAT............................................................. 21 0 16 0.56 9 7 2 0 0 0 0 0
......................................................................................................................................................................................GCATGATTATGAAGAAGCTGAA.................................................................. 22 0 14 0.50 7 7 0 0 0 0 0 0
........................................................................................................................................................................................ATGATTATGAAGAAGCTGAAGAGA.............................................................. 24 0 12 0.50 6 6 0 0 0 0 0 0
...................................................................................................................................................................................GAGGCATGATTATGAAGAAGCTGA................................................................... 24 0 13 0.46 6 6 0 0 0 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGGCATGATTATGAAG.......................................................................... 26 0 12 0.42 5 4 0 0 0 1 0 0
........................................................................................................................................................................GGGTAAATGTCGAGGCATGGTT................................................................................ 22 2 20 0.40 8 4 3 0 0 0 1 0
.......................................................................................................................................................................................................CTGAAGCGATGGGGAGGTAT................................................... 20 3 5 0.40 2 1 0 0 0 1 0 0
.................................................................................................................................................................................TCGAGGCATGATTATGAAGA......................................................................... 20 0 13 0.38 5 5 0 0 0 0 0 0
..........................................................................................................................................................................................GATTATGAAGAAGCTGAAGAGA.............................................................. 22 0 16 0.38 6 6 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGCTGAAGA................................................................ 28 0 11 0.36 4 2 0 0 2 0 0 0
..............................................................................................................................................................................GTGTCGAGGCATGATTATGAAGAAG....................................................................... 25 0 12 0.33 4 3 1 0 0 0 0 0
.....................................................................................................................................................................................GGCATGATTATGAAGAAGCTGAAGAGAT............................................................. 28 0 12 0.33 4 3 0 1 0 0 0 0
......................................................................................................................................................................CAGGGTAAGTGTCGAGGCATGATTAT.............................................................................. 26 0 12 0.33 4 1 1 2 0 0 0 0
...................................................................................................................................................................TAGCAGGGTAAGTGTCGAGGCAT.................................................................................... 23 0 3 0.33 1 0 0 1 0 0 0 0
......................................................................................................................................................................CAGGGTAAGTGTCGAGGCATGATTA............................................................................... 25 0 12 0.33 4 3 0 0 0 1 0 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCAT.................................................................................... 19 0 12 0.33 4 2 2 0 0 0 0 0
......................................................................................................................................................................................................TCTGAAGCGATGGGGTGGTAT................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GAAGAGATGAGGTGGTATCAAGGTAG........................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AGAGATGAGGTGGTATCAAGGTA............................................ 23 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGAGGTGGTATCAAGGTA............................................ 19 0 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................................................GGGTAAGTGTCGAGGCATGATT................................................................................ 22 0 12 0.33 4 2 2 0 0 0 0 0
......................................................................................................................................................................................GCATGATTATGAAGAAGCTGAAG................................................................. 23 0 12 0.33 4 4 0 0 0 0 0 0
..............................................................................................................................................................................................................GATGAGGTGGTATCAAGGTAGGAGT....................................... 25 0 3 0.33 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................ATTATGAAGAAGCTGAAGAGAT............................................................. 22 0 16 0.31 5 5 0 0 0 0 0 0
..................................................................................................................................................................................AGAGGCATGATTATGAAGAAGCTGAA.................................................................. 26 1 13 0.31 4 4 0 0 0 0 0 0
..........................................................................................................................................................................................GATTATGAAGAAGCTGAAGAGTTTT........................................................... 25 3 17 0.29 5 0 5 0 0 0 0 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCATGATTATG............................................................................. 26 0 12 0.25 3 1 2 0 0 0 0 0
.......................................................................................................................................................................TGGGTAAGTGTCGAGGCATGA.................................................................................. 21 1 12 0.25 3 0 3 0 0 0 0 0
.........................TGGTTTGACGACTTCCCTTCGT............................................................................................................................................................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TGATTATGAAGAAGCTGAAGAGA.............................................................. 23 0 16 0.25 4 4 0 0 0 0 0 0
......................................................................................................................................................................CAGGGTAAGTGTCGAGGCATGAT................................................................................. 23 0 12 0.25 3 2 0 1 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGAGATT............................................................ 27 1 12 0.25 3 0 3 0 0 0 0 0
.............................................................................................................................................................................TGTGTCGAGGCATGATTATGAAGA......................................................................... 24 1 12 0.25 3 3 0 0 0 0 0 0
....................................................................................................................................................................................AGGCATGATTATGAAGAAGCTGAAGAG............................................................... 27 0 12 0.25 3 3 0 0 0 0 0 0
.................................................................................................................................................................................ACGAGGCATGATTATGAAGAAGCTGAA.................................................................. 27 1 13 0.23 3 3 0 0 0 0 0 0
......................................................................................................................................................................................................TCTGAAGCGATGGGGTGGTA.................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................GTGCCTAGGCGGAGTTGGCGT.... 21 0 5 0.20 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TAGGAGTAGACCTGTACCGGGGTGC..................... 25 0 5 0.20 1 1 0 0 0 0 0 0
....................................................................................................................................................................AGCAGGGTAAGTGTCGAGGCATGATTA............................................................................... 27 0 5 0.20 1 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................GGGTGCCTAGGCGGAGTTGGCGT.... 23 0 5 0.20 1 1 0 0 0 0 0 0
......................................................................................................................................................................................GCATGATTATGAAGAAGCTGAAGAGATG............................................................ 28 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GGGGTGCCTAGGCGGAGTTGGCGT.... 24 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGAGTAGACCTGTACCGG.......................... 18 0 5 0.20 1 1 0 0 0 0 0 0
.........................................................................................................................................................................GGTAAATGTCGAGGCATGGTT................................................................................ 21 2 20 0.20 4 3 0 0 0 0 1 0
...............................................................................................................................................................................................TGAAGAAGCTGAAGAGAT............................................................. 18 0 16 0.19 3 2 0 0 0 0 1 0
...........................................................................................................................................................................................ATTATGAAGAAGCTGAAGAGA.............................................................. 21 0 16 0.19 3 3 0 0 0 0 0 0
...........................................................................................................................................................................TAAGTGTCGAGGCATGATTATGAAG.......................................................................... 25 0 12 0.17 2 2 0 0 0 0 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCAT.................................................................................... 17 0 12 0.17 2 0 2 0 0 0 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGAT................................................................................. 20 0 12 0.17 2 2 0 0 0 0 0 0
.............................................................................................................................................................................AGTGTCGAGGCATGATTATGAAG.......................................................................... 23 0 12 0.17 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGAG............................................................... 24 0 12 0.17 2 2 0 0 0 0 0 0
.............................................................................................................................................................................AGTGTCGAGGCATGATTATGAAGAA........................................................................ 25 0 12 0.17 2 1 1 0 0 0 0 0
......................................................................................................................................................................CAGGGTAAGTGTCGAGGCATG................................................................................... 21 0 12 0.17 2 1 0 0 0 0 0 1
.....................................................................................................................................................................................AACATGATTATGAAGAAGCTGAAGAGAT............................................................. 28 2 12 0.17 2 2 0 0 0 0 0 0
...............................................................................................................................................................................TGTCGAGGCATGATTATGAAGAAGCT..................................................................... 26 0 12 0.17 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGA................................................................ 23 0 12 0.17 2 2 0 0 0 0 0 0
......................................................................................................................................................................................GCATGATTATGAAGAAGCTGAAGA................................................................ 24 0 12 0.17 2 2 0 0 0 0 0 0
..........................................................................................................................................................................AAAAGTGTCGAGGCATGATTATGAAGA......................................................................... 27 2 12 0.17 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................................GAGGTGGTCTCAAAGTAG........................................... 18 2 6 0.17 1 1 0 0 0 0 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGATTATG............................................................................. 24 0 12 0.17 2 0 2 0 0 0 0 0
............................................................................................................................................................................AAGTGTCGAGGCATGATTATGAAGAA........................................................................ 26 0 12 0.17 2 1 1 0 0 0 0 0
...................................................................................................................................................................................AAGGCATGATTATGAAGAAGCTGAAG................................................................. 26 1 12 0.17 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GTACCGGGGTGAGTAGGCGGA............ 21 2 6 0.17 1 0 0 0 0 1 0 0
................................................................................................................................................................................GTCGAGGCATGATTATGAAGAAG....................................................................... 23 0 12 0.17 2 2 0 0 0 0 0 0
.............................................................................................................................................................................AGTGTCGAGGCATGATTATGAA........................................................................... 22 0 12 0.17 2 2 0 0 0 0 0 0
....................................................................................................................................................................................ACGCATGATTATGAAGAAGCTGAAGAGAT............................................................. 29 1 12 0.17 2 0 2 0 0 0 0 0
................................................................................................................................................................................GTCGAGGCATGATTATGAAGAAGCTG.................................................................... 26 0 12 0.17 2 2 0 0 0 0 0 0
..............................................................................................................................................................................GTGTCGAGGCATGATTATGAAG.......................................................................... 22 0 12 0.17 2 2 0 0 0 0 0 0
................................................................................................................................................................................GTCGAGGCATGATTATGAAGAAGCTGA................................................................... 27 0 12 0.17 2 2 0 0 0 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGGCATGATTATGAA........................................................................... 25 0 12 0.17 2 1 0 1 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGC...................................................................... 22 0 13 0.15 2 1 0 0 0 1 0 0
.................................................................................................................................................................................TCGAGGCATGATTATGAAGAAGCTGA................................................................... 26 0 13 0.15 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAAAACTGTACCGGGGTGCCT................... 21 3 7 0.14 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCAAGGTTGGAGTAGTCC.................................. 20 3 7 0.14 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGA................................................................... 20 0 15 0.13 2 2 0 0 0 0 0 0
....................................................................................................................................................................TGCAAGGGAAGTGTCGAGGC...................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GGGGTGTCTAGGCGAAGTTGC....... 21 3 9 0.11 1 0 0 0 0 0 0 1
.......................................................................................................................................................................................CGTGATTATGAAGAAGCTGAAGAGATG............................................................ 27 1 9 0.11 1 1 0 0 0 0 0 0
.................................................................................................................................................................................ACGAGGCATGATTATGAAGAAGCTGAAG................................................................. 28 1 11 0.09 1 1 0 0 0 0 0 0
...................................................................................................................................................................................GAGGCATGATTATGAAGAAGCTGAAGA................................................................ 27 0 11 0.09 1 1 0 0 0 0 0 0
.....................................................................................................................................................................GCAAGGGAAGTGTCGAGG....................................................................................... 18 2 11 0.09 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGACATGATTATGAAGAAGCTGAAG................................................................. 27 1 11 0.09 1 1 0 0 0 0 0 0
..................................................................................................................................................................................TGAGGCATGATTATGAAGAAGCTGAAG................................................................. 27 1 11 0.09 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAATCTGAAG................................................................. 27 1 11 0.09 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCAGAAGAGAT............................................................. 26 1 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TTAAGTGTCGAGGCATGATTATGAAG.......................................................................... 26 1 12 0.08 1 1 0 0 0 0 0 0
........................................................................................................................................................................AGGTAAGTGTCGAGGCATGATTAT.............................................................................. 24 1 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................AAGGTAAGTGTCGAGGCAT.................................................................................... 19 1 12 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TGTCGAGGCATGATTATGAAG.......................................................................... 21 0 12 0.08 1 1 0 0 0 0 0 0
................................................................................................................................................................................GCCGAGGCATGATTATGAAGAAGC...................................................................... 24 1 12 0.08 1 1 0 0 0 0 0 0
...................................................................................................................................................................................AAGGCATGATTATGAAGAAGCTGAAGA................................................................ 27 1 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................AAAGTGTCGAGGCATGATTAT.............................................................................. 21 1 12 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................................AAGTGTCGAGGCATGATCATGAAGA......................................................................... 25 1 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................................................TGTGTCGAGGCATGATTATGAA........................................................................... 22 1 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................TAAGTGTCGAGGCATGATTAT.............................................................................. 21 0 12 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................................AAGTGTCGAGGCATGATTATG............................................................................. 21 0 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................TAAGTGTCGAGGCATGAT................................................................................. 18 0 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................................................TGTGTCGAGGCATGATTATGAAGAAG....................................................................... 26 1 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGGCATGATT................................................................................ 20 0 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGGAGAGAT............................................................. 26 1 12 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................................AAGTGTCGAGGCATGAT................................................................................. 17 0 12 0.08 1 0 1 0 0 0 0 0
............................................................................................................................................................................AAGTGTCGAGGCATGATTATGA............................................................................ 22 0 12 0.08 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GGCATGATTATGAAGAAGCTGAAGAGA.............................................................. 27 0 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGGGAT............................................................. 26 1 12 0.08 1 1 0 0 0 0 0 0
........................................................................................................................................................................GGGTAAGTGACGAGGCATGATT................................................................................ 22 1 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................AAAGTGTCGAGGCATGATTATGAAG.......................................................................... 25 1 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGAGAG............................................................. 26 1 12 0.08 1 0 0 0 1 0 0 0
........................................................................................................................................................................................AAGATTATGAAGAAGCTGAAGAGA.............................................................. 24 1 12 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................................................GCATGATTATGAAGAAGCTGAAGAGAT............................................................. 27 0 12 0.08 1 0 0 1 0 0 0 0
..............................................................................................................................................................................GTGTCGAGGCATGATTATGAAGAA........................................................................ 24 0 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................AAAGTGTCAAGGCATGATTATGAAGA......................................................................... 26 2 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TAAAGTGTCGAGGCATGATTA............................................................................... 21 2 12 0.08 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GGCATGATTATGAAGAAGCTGAAGAG............................................................... 26 0 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGGG............................................................... 24 1 12 0.08 1 0 0 0 1 0 0 0
.........................................................................................................................................................................AAAAAGTGTCGAGGCATGATTATGAAGA......................................................................... 28 3 12 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................................................ACATGATTATGAAGAAGCTGAAGAGAG............................................................. 27 2 12 0.08 1 1 0 0 0 0 0 0
................................................................................................................................................................................GTCGAGGCATGATTATGAAGAAGC...................................................................... 24 0 12 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................................CAGGGTAAGTGTCGAGGCA..................................................................................... 19 0 12 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................................AAGTGTCGAGGCATGATTATGAAGAAG....................................................................... 27 0 12 0.08 1 1 0 0 0 0 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGATTATA............................................................................. 24 1 12 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TGTCGAGGCATGATTATGAA........................................................................... 20 0 12 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................................GTGTCGAGGCATGATTATGAAGAAGCT..................................................................... 27 0 12 0.08 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GGCATGATTATGAAGAAGCTGAAGA................................................................ 25 0 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAGGCTGAAGAGAT............................................................. 26 1 12 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................................................TCATGATTATGAAGAAGCTGAAGAGAT............................................................. 27 1 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGGCATGAT................................................................................. 19 0 12 0.08 1 0 1 0 0 0 0 0
............................................................................................................................................................................TAGTGTCGAGGCATGATT................................................................................ 18 1 12 0.08 1 1 0 0 0 0 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGA.................................................................................. 19 0 12 0.08 1 0 0 1 0 0 0 0
....................................................................................................................................................................................TGGCATGATTATGAAGAAGCTGAAGA................................................................ 26 1 12 0.08 1 1 0 0 0 0 0 0
........................................................................................................................................................................................ATGGTTATGAAGAAGCTGAAGAGAT............................................................. 25 1 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGAGGT............................................................. 26 1 12 0.08 1 0 0 0 1 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGACATGATTATGAAGA......................................................................... 27 1 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................AAAGATTATGAAGAAGCTGAAGAGAT............................................................. 26 2 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCA..................................................................................... 18 0 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................................................AGTGTCGAGGCATGATTATGAAGAT........................................................................ 25 1 12 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................................................AAATGATTATGAAGAAGCTGAAGAGAT............................................................. 27 2 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................AAAGTGTCGAGGCATGATT................................................................................ 19 1 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGGAGAAGCTGAAGAGAT............................................................. 26 1 12 0.08 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................CATGATTGTGAAGAAGCTGAAGAGA.............................................................. 25 1 12 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TGTCGAGGCATGATTATGAAGAAGC...................................................................... 25 0 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................AGGGTAAGTGTCGAGGCATGATTGT.............................................................................. 25 1 12 0.08 1 0 0 0 1 0 0 0
..........................................................................................................................................................................GTAAGTGTCGAGGCATGATTATG............................................................................. 23 0 12 0.08 1 1 0 0 0 0 0 0
.........................................................................................................................................................................GGTAAGTGTCGAGGCATGGT................................................................................. 20 1 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TAAAGTGTCGAGGCATGATTATGAAGA......................................................................... 27 2 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CATGATTATGAAGAAGCTGAAGAGAA............................................................. 26 1 12 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGCTCAA.................................................................. 26 1 13 0.08 1 0 0 0 1 0 0 0
...................................................................................................................................................................................GAGGCATGATTATGAAGAAGC...................................................................... 21 0 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................AAAGGCATAATTATGAAGAAGCTGAAG................................................................. 27 3 13 0.08 1 1 0 0 0 0 0 0
...................................................................................................................................................................................GAGGCATGATTACGAAGAAGCTGAA.................................................................. 25 1 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATTATTATGAAGAAGCTGAA.................................................................. 26 1 13 0.08 1 1 0 0 0 0 0 0
.................................................................................................................................................................................AAGAGGCATGATTATGAAGAAGCTGAA.................................................................. 27 2 13 0.08 1 1 0 0 0 0 0 0
.................................................................................................................................................................................CCGAGGCATGATTATGAAGAAGCTGGA.................................................................. 27 2 13 0.08 1 0 0 0 1 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAG....................................................................... 21 0 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGTTGAA.................................................................. 26 1 13 0.08 1 0 0 0 1 0 0 0
...................................................................................................................................................................................GAGGCATGATTATGAAGAAGCT..................................................................... 22 0 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAATCTGAA.................................................................. 26 1 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGA......................................................................... 19 0 13 0.08 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TCGAGGCATGATTATGAAGAAGCTG.................................................................... 25 0 13 0.08 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TCGAGGCATGATTATGAAGAAGCGGAA.................................................................. 27 1 13 0.08 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TCGAGGCATGATTATGAAGAGGCTGAA.................................................................. 27 1 13 0.08 1 0 0 0 1 0 0 0
.................................................................................................................................................................................TCGAGGCATGATTATGAAGAAGC...................................................................... 23 0 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGACATGATTATGAAGAAGCTGAA.................................................................. 26 1 13 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TGTCGAGGCATGATTATGAATA......................................................................... 22 1 13 0.08 1 0 0 0 1 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAAGAAGCT..................................................................... 23 0 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGCATGATTATGAATA......................................................................... 19 1 14 0.07 1 0 0 0 1 0 0 0
......................................................................................................................................................................................GCATGATTATGAAGAAGCT..................................................................... 19 0 14 0.07 1 1 0 0 0 0 0 0
....................................................................................................................................................................................AGACATGATTATGAAGAAGCTGAA.................................................................. 24 1 14 0.07 1 1 0 0 0 0 0 0
....................................................................................................................................................................................AGGCATGATTATGAAGAAGCT..................................................................... 21 0 14 0.07 1 1 0 0 0 0 0 0
....................................................................................................................................................................................AGGCATGATTATGAAGAAGCTGA................................................................... 23 0 14 0.07 1 1 0 0 0 0 0 0
...................................................................................................................................................................................CAGGCATGATTATGAAGAAGCTGAA.................................................................. 25 1 14 0.07 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................TGATTATGGAGAAGCTGAAGAGAT............................................................. 24 1 16 0.06 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................TATGAAGAAGCTGAAGAGAT............................................................. 20 0 16 0.06 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TGATTATGAAGAAGTTGAAGAGAT............................................................. 24 1 16 0.06 1 1 0 0 0 0 0 0
............................................................................................................................................................................................ATATGAAGAAGCTGAAGAGAT............................................................. 21 1 16 0.06 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................AATTATGAAGAAGCTGAAGAGAT............................................................. 23 1 16 0.06 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................GATTATGAAGAAGCTGAAGATA.............................................................. 22 1 18 0.06 1 0 0 0 1 0 0 0
..................................................................................................................................................TAGTTTTAAACTAGTTTTAA........................................................................................................ 20 2 19 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_6:39279-39548 + dps_2102 AGAGCCATGGAGGCTGGCCATATCTACCAAACTGCTGAAGGGAAGCAGAGGTAAGCGAAACGAAACGGCTTGTGTTGGTGTGAGAATAGAAAAAAAAGACGAACGATTTTTATAAATTTTTTGTTGTCAAATAATTAATTAATTAAATCAAAATTAGATCAAAATCGTCCCATT----------------CACA-----------------------GC------TCCGTACTAA---TA------CTT---CTTCGACTT-------------------------------CTCTA---CT------C-----CA------------CCATAGTTCCATCCTCATCTGGACATGGCCCCACGGATCC------GCCTCAACCGCACCAC
droPer2 scaffold_43:212979-213136 + AGAGCCATGGAGACTGGCCATATCTACCAAGCTGCTGAAGGGAAGCAGAGGTAAGCGAAACGAAACGGCTTGTGTTGGTGTGAGAATAGAAAAAAAAGACGAACGATTTTTATAAATTTTTTGTTGTCAAATAATTAATTAATTAAATCAAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA
droWil2 scf2_1100000004948:54112-54210 - AACCA----------------------------------------------------------------------------------------------------------ATC----------------------------------------------------------------------------CACTTTC------------C-------------CCTC-------------------------CGTAATTTCTTTCGTT-TCAGTCCTTCAGATCATCTT----TCCA-------------------------------C----------------TGCGATATGGCCCCCACGCGGTC------GCCGCACCGTAGCA-G
droVir3 scaffold_9765:7932-8061 - AGATA----------------------------------------------------------------------------------------------------------ACC----------------------------------------------------------------------------TACAAATAAATTCAAAACAA-------------AACCATCACATAATA-----ACATC----TCTCCTACATCTTATTCTCC-------AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------CATGGCAC--CGTCAACGAAGGCATCCAATCAACGCCAA
droMoj3 scaffold_1642:10934-10978 + TTTTT----------------------------------------------------------------------------------------------------------AAAAATTTTCTATTATCAAAGCATCAAAATATTGAATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droBip1 scf7180000392073:12943-13075 - AATAA----------------------------------------------------------------------------------------------------------TTAA-----------------------TTCATTA-------------------AATAATTACTCA----CCGTAGTTCC--------------------GAACAATCATTCACACCGATTCTAA---TA------ATGTT-TTTT-GTT-------------------------------CCTTCATCA-------TATTTCCGCCAGCCATAGTCAA-------------------CACGATG-----------TC------GCCACGCCCACGCAAC
droKik1 scf7180000297916:902-999 - TCGTC----------------------------------------------------------------------------------------------------------CTCA-----------------------T-----------------------C---------------------------CATA---------------------ACAC-------------------------------------------TTCATTTTCA-------TATTTATCCATCTCTCTG---TT------T-----TA------------ACGTAGATCCGTG-----TATACAATGGCTCCA-----AC------GACCCACCGAAATCCT
droFic1 scf7180000453389:22095-22188 - TCAAA----------------------------------------------------------------------------------------------------------ATC------------------------------------------CGTCCACAA------------------------------------------------------------TTGATACTAA---------GTTCG---CTTATATT-------------------------------TTTTTATTA-------AAGCAT-------------CGA-------------------TACCATGGCTCCACGTCCTC------GCAGCGCCCAAACTTT
droEle1 scf7180000490425:21427-21583 - TTGTC----------------------------------------------------------------------------------------------------------AA-----------------AAACTCTACCAAATAAATCCATATTCCGTCATCCATAGTCCATAAGCAAG----------TGCC-----------------------AC------TTCATTCTGA---ATCAT-CTTC----ATTCGCTT-----------------------------------T---CTTTTTCCA-TAATTTCCCTTCAGA------------------TTCGCTTGAGATGGCCCCATGTCCAC------GCAGCGCCCAGACTCT
droRho1 scf7180000777647:8095-8227 + AGTTC----------------------------------------------------------------------------------------------------------AAT------------------------------T-------------------AATAGTTCCAAC----CCGTAGTTCC--------------------AATTCGCAGTTCTTATCAGTACTGA---TC------CAAATTTTTC-------------------------------------------ATTTGTCCT-ATTCCGCCAATCAGATCTCA-------------------CACGATGTCTCCACGTCCGC------GCAGCGCCATCGCATT
droBia1 scf7180000302073:134310-134396 + TAAAA----------------------------------------------------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------TCTCC----TTTTTTTT-----------------------------------T---CTTTTTCCA-TGATCCACTGTCAGA------------------TCCTTTAAGAATGGCTCTATGTCAGC------GCAGCGTCCAAGCATT
droTak1 scf7180000415167:23261-23401 - GTCAT----------------------------------------------------------------------------------------------------------ATCA-----------------------C-------------------TCATTCATCATTCATAAG----TCATATCACT--------------------CATTCATCATTTATTTCACTA---------------------TTCA-GAC-------------------------------CATCCTACA-------TCCATCCGGTTTTCGTTCTC-----------------AGATCACCATGACGCCACGCCCACGCCGAGAGCAGGTACAAGCCAA
droEug1 scf7180000409256:8372-8485 - TAGTT----------------------------------------------------------------------------------------------------------CC-------------------------------------------------------------------------------------------------AAATCGAACTTCACATCAATTCTGA---TA------CCGCTGTTTT-GTT-------------------------------TCTTTATCA-------TAGTTCCGCCAGTCATTTTCAG-------------------TACGATGTCGCCACGTCTAC------GCAGCGCCCAGTCACT
dm3 chr2RHet:1636526-1636611 + CATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTCGTCCTC------GTGCCACCCAGTCGTT
droSim2 node_111544:121-206 + CATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTCGACCTC------GTGCCACCCAGTCGTT
droSec2 scaffold_1225:1142-1226 - CATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTC-TTTATTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTCGTCCTC------GTGCCACACAGTCGTT
droYak3 v2_chr2h_random_004:443479-443584 - GTCCA----------------------------------------------------------------------------------------------------------ATT----------------------------------------------------------------------------CGTAGTT------------T-------------TACCAGTACTTA---TT-----TTCG---CTT--CTC-----------------------------------T---CTCTATCCA-ATTCCTCCAGTCATATCAAG-------------------CACGATGTCTCCACGTCCGC------ACAGCGCCACCACATT
droEre2 scaffold_4770:169277-169308 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTCCTCTTCCTC------GTGCCACCCAGTCCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGAGCCATGGAGGCTGGCCATATCTACCAAACTGCTGAAGGGAAGCAGAGGTAAGCGAAACGAAACGGCTTGTGTTGGTGTGAGAATAGAAAAAAAAGACGAACGATTTTTATAAATTTTTTGTTGTCAAATAATTAATTAATTAAATCAAAATTAGATCAAAATCGTCCCATT----------------CACA-----------------------GC------TCCGTACTAA---TA------CTT---CTTCGACTT-------------------------------CTCTA---CT------C-----CA------------CCATAGTTCCATCCTCATCTGGACATGGCCCCACGGATCC------GCCTCAACCGCACCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................TAGTTCCATCCTCATCTGGACATGGCC................................2730.6720200000000
........................................................................................................................................................................................................................................TAA---TA------CTT---CTTCGACTT-------------------------------CTCTA---CT------C-----............................................................................2550.6030300000000
......................TCTACCAAACTGCTGAAGGGAAGC........................................................................................................................................................................................................................................................................................................................................................2440.5020200000000
........................................................................................................................................................................................................................................TAA---TA------CTT---CTTCGACTT-------------------------------CTCTA---CT------C-----CA------------..............................................................2750.4020200000000
...........................................................................................................................................................................................................................................................................................................................................................TGGACATGGCCCCACGGATCC------GCCT............2550.4020200000000
........................................................................................................................................................................................................................................TAA---TA------CTT---CTTCGACTT-------------------------------CTCTA---CT------..................................................................................2450.4020200000000
...............................................................................................................................................................................................................................................................................................................................................TCCATCCTCATCTGGACATGGCCCCA.............................2630.3310100000000
..............................................................................................................................................................................................................................................................................................................................................TTCCATCCTCATCTGGACATGGCC................................2430.3310100000000
...............................................................................................................................................................................................................................................................................................................................................TCCATCCTCATCTGGACATGGCCC...............................2430.3310100000000
...........................................................................................................................................................................................................................................................................................................................................TAGTTCCATCCTCATCTGGACATGG..................................2530.3310100000000
...........................................................................................................................................................................................................................................................................................................................................TAGTTCCATCCTCATCTGGACATGGCCC...............................2830.3310100000000
........................................................................................................................................................................................................................................TAA---TA------CTT---CTTCGACTT-------------------------------CTCTA---..........................................................................................22160.3150410000000
..................................................................................................................................................................................................................................CCGTACTAA---TA------CTT---CTTCGACTT-------------------------------..................................................................................................23140.2940300100000
.............................................................................................................................................................................T----------------CACA-----------------------GC------TCCGTACTAA---TA------CTT---CTT.......................................................................................................................................25120.2530000000300
..................................................................................................................................................................................................................................CCGTACTAA---TA------CTT---CTTCGACTT-------------------------------CTC...............................................................................................26120.2530300000000
.............................................................................................................................................................................T----------------CACA-----------------------GC------TCCGTACTAA---TA------CTT---C.........................................................................................................................................23120.2530210000000
......................................................................................................................................................................................................................................................................................................................................................TCATCTGGACATGGCCCCACGGATC.......................2550.2010100000000
......................................................................................................................................................................................................................................................................................................................................................TCATCTGGACATGGCCCCACGGAT........................2450.2010100000000
...................................................................................................................................................................................................................................................................................................................................................TCCTCATCTGGACATGGCCCCACGG..........................2550.2010100000000
......................................................................................................................................................................................................................................................................................................................................................TCATCTGGACATGGCCCCACGGATCC------GC..............2850.2010100000000
......................................................................................................................................................................................................................................................................................................................................................TCATCTGGACATGGCCCCAC............................2050.2010100000000
........................................................................................................................................................................................................................................TAA---TA------CTT---CTTCGACTT-------------------------------CTCT..............................................................................................21160.1930300000000
................................................................................................................................................................................................CA-----------------------GC------TCCGTACTAA---TA------CTT---CTTCGACT..................................................................................................................................27120.1720110000000
......................................................................................................................................................................GTCCCATT----------------CACA-----------------------GC------TCCGTA...............................................................................................................................................................20120.1720200000000
.......................................................................................................................................................................TCCCATT----------------CACA-----------------------GC------TCCGTAC..............................................................................................................................................................20120.1720200000000
....................................................................................................................................................................................................................................GTACTAA---TA------CTT---CTTCGACTT-------------------------------CTC...............................................................................................24120.1720200000000
.................................................................................................................................................................................................................................TCCGTACTAA---TA------CTT---CTTCGACT..................................................................................................................................23140.1420000000200
...............GGCCATATCTACCAAAGC.....................................................................................................................................................................................................................................................................................................................................................................1870.1410100000000
.............................................................................................................................................................................T----------------CACA-----------------------GC------TCCGTACTAA---TA------CT..............................................................................................................................................21120.0810100000000
......................................................................................................................................................................GTCCCATT----------------CACA-----------------------GC------TCCGTAC..............................................................................................................................................................21120.0810100000000
......................................................................................................................................................................GTCCCATT----------------CACA-----------------------GC------TCCGTACA.............................................................................................................................................................22120.0810100000000
.................................................................................................................................................................................................................................TCCGTACTAA---TA------CTT---CTTCGACTT-------------------------------CTC...............................................................................................27120.0810100000000
.................................................................................................................................................................................................................................TCCGTACTAA---TA------CTT---CTTCGACTT-------------------------------C.................................................................................................25120.0810100000000
..................................................................................................................................................................................................................................CCGTACTAA---TA------CTT---CTTCGACTT-------------------------------C.................................................................................................24120.0810100000000
..............................................................................................................................................................................................CACA-----------------------GC------TCCGTACTAA---TA------CTT---CTTCGACT..................................................................................................................................29120.0810100000000
..........................................................................................................................................................................................................................C------TCCGTACTAA---TA------CTT---CTTCGACT..................................................................................................................................24130.0810100000000
..................................................................................................................................................................................................................................CCGTACTAA---TA------CTT---CTTCGACT..................................................................................................................................22140.0710010000000
...................................................................................................................................................................................................................................CGTACTAA---TA------CTT---CTTCGACTT-------------------------------..................................................................................................22140.0710100000000
droPer2
AGAGCCATGGAGACTGGCCATATCTACCAAGCTGCTGAAGGGAAGCAGAGGTAAGCGAAACGAAACGGCTTGTGTTGGTGTGAGAATAGAAAAAAAAGACGAACGATTTTTATAAATTTTTTGTTGTCAAATAATTAATTAATTAAATCAAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AACCA----------------------------------------------------------------------------------------------------------ATC----------------------------------------------------------------------------CACTTTC------------C-------------CCTC-------------------------CGTAATTTCTTTCGTT-TCAGTCCTTCAGATCATCTT----TCCA-------------------------------C----------------TGCGATATGGCCCCCACGCGGTC------GCCGCACCGTAGCA-GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AGATA----------------------------------------------------------------------------------------------------------ACC----------------------------------------------------------------------------TACAAATAAATTCAAAACAA-------------AACCATCACATAATA-----ACATC----TCTCCTACATCTTATTCTCC-------AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------CATGGCAC--CGTCAACGAAGGCATCCAATCAACGCCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAAC................................................................23208.4016830441411800000100000000000140190101005214103536101000000000000000200000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------C......................................27205.7011430904000000000000000000141018140110609136410000000000000000000100000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------.......................................26203.356700500210000000000000100063151031005027123000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAACC...............................................................24202.905860600160100000000000000006121030004111000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAA.................................................................22202.35470050001040000400000000001016450001012002100000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------CA.....................................28201.50300010010000000000000000000134220000030211000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGA..................................................................21201.50300030516000000000000010000002000000001011000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAACCA..............................................................25201.3026004020000000000000001002123200000000108000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CGAAGGCATCCAATCAACGCC..2120.501000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAAA................................................................23200.357000000012000000000000001001000000010100000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTCACTCC----TCTG---------------------TAGAGAACCAG----------------------C......................................24200.255000000300000000000000000000000000000011000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCACTCC----TCTG---------------------TAGAGAACCAG----------------------C......................................23200.204000000000000000000000001000100000000002000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAG...................................................................20200.204000000000010000000000001000000000100000000000001000000000000000
.......................................................................................................................................................................................................................................................................................AGTTCACTCC----TCTG---------------------TAGAGAAC................................................................22200.204000000202000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------CATGGCAC--.............................34190.163000000000000000000000000000000000000000010000000002000000000000
.......................................................................................................................................................................................................................................................................................AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------.......................................25200.153003000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCACTCC----TCTG---------------------TAGAGAAC................................................................19200.153000000000000000000000000000000000000002100000000000000000000000
...........................................................................................................................................................................................................................................................................TCTCC-------AGTTCACTCC----TCTG---------------------TAGAGAAC................................................................27200.153000000000000000000000000101000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------C......................................26200.102000000100000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................G---------------------TAGAGAACCAG----------------------CATGGCAC--C............................21200.102010010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TG---------------------TAGAGAACCAG----------------------CATGGCAC--CGTCAACGAAGGC................34100.101000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................TCC----TCTG---------------------TAGAGAACCAG----------------------CATGGCAC--C............................27200.102000000000000000000000000000000000000000000000000100000000010000
..........................................................................................................................................................................................................................................................................................TCACTCC----TCTG---------------------TAGAGAACCA..............................................................21200.102000010100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CC----TCTG---------------------TAGAGAACCAG----------------------CATGGCAC--.............................25200.102000000000000000000000000001000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TCC-------AGTTCACTCC----TCTG---------------------TAGAGAAC................................................................25200.102000000000000000000000000010000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................TCC-------AGTTCACTCC----TCTG---------------------TAGAGA..................................................................23200.102000000000000010000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CAC--CGTCAACGAAGGCATCCAATCAAC.....27140.071000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CGTCAACGAAGGCATCCAATC........21150.071000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CGTCAACGAAGGCATCCAATCAAC.....24150.071000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTCACTCC----TCTG---------------------TAGAGAA.................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGA....................................................................19200.051000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AGTTCACTCC----TCTG---------------------TAGA....................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CC----TCTG---------------------TAGAGAACCAG----------------------CATGGCAC--CGTC.........................29200.051100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GTTCACTCC----TCTG---------------------TAGAGAAC................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ACTCC----TCTG---------------------TAGAGAACCAG----------------------CATGG..................................25200.051000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCACTCC----TCTG---------------------TAGAGAACCAG----------------------CA.....................................24200.051000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TCC----TCTG---------------------TAGAGAACCAG----------------------CATGGCAC--CG...........................28200.051000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTCACTCC----TCTG---------------------TAGAGAACCAG----------------------CA.....................................25200.051000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................CTCC----TCTG---------------------TAGAGAACCAG----------------------.......................................19200.051000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGAGAACCAT----------------------.......................................26200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAG.....................................................................18200.051000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TCTTATTCTCC-------AGTTCACTCC----TCT..............................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TCC----TCTG---------------------TAGAGAACCAG----------------------CATGGCA................................25200.051000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................C----TCTG---------------------TAGAGAACCAG----------------------CATGGC.................................22200.051000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................G---------------------TAGAGAACCAG----------------------CATGGCAC--CGTCAACG.....................28200.051100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCACTCC----TCTG---------------------TAGAGAACCAG----------------------.......................................22200.051000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-------AGTTCACTCC----TCTG---------------------TAGACC..................................................................21200.051000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................TTATTCTCC-------AGTTCACTCC----TCTG---------------------TAGA....................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................TCC-------AGTTCACTCC----TCTG---------------------TAGAGAACCAG----------------------C......................................29200.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TCTCC-------AGTTCACTCC----TCTG---------------------TAGAGA..................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TCTTATTCTCC-------AGTTCACTCC----TCTG---------------------T.......................................................................26200.051000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................TATTCTCC-------AGTTCACTCC----TCTG---------------------TAGAGA..................................................................28200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................CACTCC----TCTG---------------------TAGAGAACCAG----------------------CATGG..................................26200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTTTT----------------------------------------------------------------------------------------------------------AAAAATTTTCTATTATCAAAGCATCAAAATATTGAATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droBip1
AATAA----------------------------------------------------------------------------------------------------------TTAA-----------------------TTCATTA-------------------AATAATTACTCA----CCGTAGTTCC--------------------GAACAATCATTCACACCGATTCTAA---TA------ATGTT-TTTT-GTT-------------------------------CCTTCATCA-------TATTTCCGCCAGCCATAGTCAA-------------------CACGATG-----------TC------GCCACGCCCACGCAACSizeHit CountTotal NormTotal
No Reads
droKik1
TCGTC----------------------------------------------------------------------------------------------------------CTCA-----------------------T-----------------------C---------------------------CATA---------------------ACAC-------------------------------------------TTCATTTTCA-------TATTTATCCATCTCTCTG---TT------T-----TA------------ACGTAGATCCGTG-----TATACAATGGCTCCA-----AC------GACCCACCGAAATCCTSizeHit CountTotal NormTotal
No Reads
droFic1
TCAAA----------------------------------------------------------------------------------------------------------ATC------------------------------------------CGTCCACAA------------------------------------------------------------TTGATACTAA---------GTTCG---CTTATATT-------------------------------TTTTTATTA-------AAGCAT-------------CGA-------------------TACCATGGCTCCACGTCCTC------GCAGCGCCCAAACTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTGTC----------------------------------------------------------------------------------------------------------AA-----------------AAACTCTACCAAATAAATCCATATTCCGTCATCCATAGTCCATAAGCAAG----------TGCC-----------------------AC------TTCATTCTGA---ATCAT-CTTC----ATTCGCTT-----------------------------------T---CTTTTTCCA-TAATTTCCCTTCAGA------------------TTCGCTTGAGATGGCCCCATGTCCAC------GCAGCGCCCAGACTCTSizeHit CountTotal NormTotal
No Reads
droRho1
AGTTC----------------------------------------------------------------------------------------------------------AAT------------------------------T-------------------AATAGTTCCAAC----CCGTAGTTCC--------------------AATTCGCAGTTCTTATCAGTACTGA---TC------CAAATTTTTC-------------------------------------------ATTTGTCCT-ATTCCGCCAATCAGATCTCA-------------------CACGATGTCTCCACGTCCGC------GCAGCGCCATCGCATTSizeHit CountTotal NormTotal
No Reads
droBia1
TAAAA----------------------------------------------------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------TCTCC----TTTTTTTT-----------------------------------T---CTTTTTCCA-TGATCCACTGTCAGA------------------TCCTTTAAGAATGGCTCTATGTCAGC------GCAGCGTCCAAGCATTSizeHit CountTotal NormTotal
No Reads
droTak1
GTCAT----------------------------------------------------------------------------------------------------------ATCA-----------------------C-------------------TCATTCATCATTCATAAG----TCATATCACT--------------------CATTCATCATTTATTTCACTA---------------------TTCA-GAC-------------------------------CATCCTACA-------TCCATCCGGTTTTCGTTCTC-----------------AGATCACCATGACGCCACGCCCACGCCGAGAGCAGGTACAAGCCAASizeHit CountTotal NormTotal
No Reads
droEug1
TAGTT----------------------------------------------------------------------------------------------------------CC-------------------------------------------------------------------------------------------------AAATCGAACTTCACATCAATTCTGA---TA------CCGCTGTTTT-GTT-------------------------------TCTTTATCA-------TAGTTCCGCCAGTCATTTTCAG-------------------TACGATGTCGCCACGTCTAC------GCAGCGCCCAGTCACTSizeHit CountTotal NormTotal
No Reads
dm3
CATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTCGTCCTC------GTGCCACCCAGTCGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACCCAGTCGT.262073.25146501000000000000000000081400000000000002140111003050912091000100000000000000000000000030206000000000200000600000002020000000000000020020810302030638391031413109131400000000000000000000000002000000070300303031301031411207143102360000016461143034911364000000000201000000000000000000000000000000000000000000000004000007852000000120300000000000000153223140000011
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................272036.107220000000000000000000000000000000000001030340062301410200005241250000000000000000000000550160000000002000000000000010000300000000000000410030503000002010121000200000000000000000000000002000000010000002000000000000000000271820870230046610180000000000000000000000000000000000000000000000000000000000000000026010000001541000000000000000300000000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACCCAGTCG..252029.5559100000000000000000000004000000000000010006010720002105100000000000000000000000000004630200000100010000000000020001001000000000000000000020000252131022082230490000000000000000000000000100000003350211602000002701509168115000012330220354000000000300000000000000000000000000000000000000000000000000100001410430000001210700000000000000515330000010
......................................................................................................................................................................................................................................................................................................................................................................CCTCGTCCTC------GTGCCACCCAGTCGT.252021.104220000000000000000000001300000000000000000301021200010100000100000000000000000000000001000000000000000000000003000000000000000000000002000200311243120400505600000000000000000000000000000000020504001002010103090411036000120001804701127330000000000100000000000000000000000000000000000000000000000000000001035000000180000000000000000673000000
............................................................................................................................................................................................................................................................CTTCATTTCTTTTATTGGCA-------GAC............................................................................................................23517.20860000000000000000000000000000000000000200000100020101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001001100600446000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACCCAGTCGTT272011.102220000000000000000000000100000000000000020500000201001200001000000000000000000000000000000000000000000000000000000100000000000000000001000000000100020200100200000000000000000000000000000000020200001030011010030132200007001100304920450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000
.......................................................................................................................................................................................................................................................T----CTTCATTTCTTTTATTGGCA-------...............................................................................................................2159.60480000000000000000000000000000000000001010010000000010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000020000054200000000000000000000000000000000000000000000000000000000000000060802282000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000
......................................................................................................................................................................................................................................................TT----CTTCATTTCTTTTATTGGCA-------...............................................................................................................2259.004500000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000010000000002000108152117000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TT----CTTCATTTCTTTTATTGGC.......................................................................................................................2158.804400000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000060000000000000000000000000000000000000401202475000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACCCAGTC...24208.451690010000100000000000000110000000000000010000022101000400000000000000000000000000000000119000000000100000000000000001020000000000010010402022010100402000111110000000000000000000000000000000000101000010000000020400140000300021190019181000000000000000000000000000000000000000000000000000000000000000000001000000300000000000000000240000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATG...................................25208.051610000000000000000000000010000000001000000010000300000020000200000000000000000000000300000000000002000000000040000100000000000000000000000000000000010010510100000000000000000000000000000000010100000000000000000000000400150592909174000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000
...AC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATT..........................................................................................................................2556.803400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000012271001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACCCAGT....23206.5513100000010000000000000000000000000000100400000000000000100000000000000000000000000007042600000000020000000000000001002000000000000000030011102120040100000611400000000000000000000000000000000100000001000011001010030000100031000130101000000001200000000001000000000000000000000000000000000000003000000001000000210000000000000000100000004
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATT..........................................................................................................................2656.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000051624092000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TCGTCCTC------GTGCCACCCAGTCGTT24205.951190000000000000000000000110000000000000010100011002100110000000000000000000000000000000000000000000000000000000000000000000000000000001000000011058001200009500000000000000000000000010000000000000500000100103000050000500121141313120000000000000000000000000000000000000000000000000000000000000000000101000000100000000000000001210000000
........................................................................................................................................................................................................................................................................................................................................................................TCGTCCTC------GTGCCACCCAGTCGT.23205.85117000000000000000000000100000000000000000030002100003000000100000000000000000000000000001000000000000000000000000000000000000000000010300000010210222210002004000000000000000000000000000000000000000000000000210001410004001309021161000000000100000000000000000000000000000000000000000000000000000000101000000640000000000000003110000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAA.....................................23205.551110000000000000000000000000000000000000000000000000000000003527340000000000000000000000000200000000000000000000003000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010200041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGTCCTC------GTGCCACCCAGT....25205.401080000000000000000000000000000000000000000000000000000200000000000000000000000000000240130000000000000000000000000000000000000000000000000000000103000000104000000000000000000000000000000000000000000000000200000000000300080302612122000000000000000000001000000000000000000000000000000000000003000000000000000210000000000000000111000000
......................................................................................................................................................................................................................................................................................................................................................................CCTCGTCCTC------GTGCCACCCAGTCG..24205.1510300010000000000000000010000000000000000003000000000101000000000000000000000000000000000100000000000000000000000000000000000000000000000010000031040001000242000000000000000000000000000000000000000000000000010000410000701020010320000000000000000000000000000000000000000000000000000000000000000000102000000143000000000000000431000000
........................................................................................................................................................................................................................................................................................................................................................................TCGTCCTC------GTGCCACCCAGTCG..22205.1010200000000000000000000000000000000000000200010100000100000000000000000000000000000000000200000000000000000000000000000000000000000000000000000100050011100100000000000000000000000000000000000100300000000101000204917000102010000200000000000000000000000000000000000000000000000209050000000000000000121000000943000000000000000113000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAAT....................................24205.05101000000010000000000000000000000000000000000001000002000000325000000000000000000000040046000000000200000000000000020000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000010117024843123000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCT................................28204.0080000000000000000000000000000000000000000000001020001010000023000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000050000000000000000000000000000000000000100000000001000000000000008281250156000000000000000000000000000000000000000000000000000000000000000001000000000201000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................CTCGTCCTC------GTGCCACCCAGTCGT.24204.00800000000000000000000000100000000000000010010010000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000010000011201100300000000000000000000000000000000100100002000000000000016100000002011174120000000000000000000000000000000000000000000000000000000000000000001003000000000000000000000000020000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATTGG........................................................................................................................2853.40170000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000093001111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTAT...........................................................................................................................2553.40170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050310053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CTCGTCCTC------GTGCCACCCAGTCGTT25203.4068000000000000000000000110000000000000002020201000000100000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000500220100000000000000000000000000000000000000010000000000000201004000030006012003130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...AC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATTGGC.......................................................................................................................2853.40170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020172211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CTTCATTTCTTTTATTGGCA-------...............................................................................................................2053.40170000000000000000000000000000000000000000110000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000021101213000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATTGGC.......................................................................................................................2653.20160000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040600220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................T----CTTCATTTCTTTTATTGGC.......................................................................................................................2053.20160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000003000000000000000000000000000000000000020301051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TT----CTTCATTTCTTTTATTGGCA-------GACT...........................................................................................................2653.20160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000010000000010000000100030111040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................CCTCGTCCTC------GTGCCACCCAGTCGTT26202.9559000000000000000000000100000000000000000000000000100010000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000011000000000000000000000000000000000000001000000000100000000011540001000307106110000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CTCGTCCTC------GTGCCACCCAGTCG..23202.905800000000000000000000000000000000000000000000001000000000000100000000000000000000000200000000000000000000000000000000000000000000000000000000130002000110004000000000000000000000000000000000000000000000000004201210000400100000000000000000000000000000000000000000000000000000000000000000000000000101000000310000000000000000201000000
...AC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTA............................................................................................................................2352.80140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001290001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CCTCGTCCTC------GTGCCACCCAGT....22202.655300000000000000000000000000000000000000000000000000000100000000000000000000000000000100500000000000000000000000000000000000000000000000000001001011001100103000000000000000000000000000000000000000000020000003000000000300001505231000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACCCAG.....22202.65530000000010000000000000000000000000030000000000000000000000000000000000000000000000301150000000000000001000000000000000000000000000102100000000001000000000000000000000000000000000000000000000000000000012000000066000200010005030000000000000000000000000000000000000000000000021000000000001000000100000000020000000000000000000000000
...AC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTAT...........................................................................................................................2452.60130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000390001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATTGG........................................................................................................................2752.60130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020161111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................A----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCTTTTATTGG........................................................................................................................2452.60130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030302023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................ACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTCG...........................28200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
CATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTCGACCTC------GTGCCACCCAGTCGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAA.....................................24553.402670001522515000000120000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATT...................................................................................................................................17235.5071000000020366000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................27620.50123000317035481350020000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGACCTC------GTGCCACCCAGTCGT.26115.001500010023009000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATA......................................23513.20660001045000010082000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATT..........................................................................................................................26113.001300000031223011000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTC.................................................................................................................................19213.00260000100000015010000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTT..................................................................................................................................18212.5025000000000223000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTA............................................................................................................................24111.001100011020111040000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................28510.60530032100430010201000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAT....................................2559.604800018150000010140000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAAT....................................2468.675200020171014321030000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTAT...........................................................................................................................2516.00600000001200030000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTC...........................................1865.6734000034000000000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGG..................................2665.50330000001511430000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAA........................................2555.4027001915000001010000
...........................................................................................................................................................................................................................................................................................................................................................................ACCTC------GTGCCACCCAGTCGT.2025.0010000000000010000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCAT....................................................................................................................................1625.0010000000000010000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATG...................................2654.4022000615000000010000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAAT.......................................2254.2021000215000000040000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCC.............................................2163.8323000117000300020000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAA........................................2153.6018000015000000021000
..................................................................................................................................................................................................................................................................................................T---------------------------------------------------TCCTCCAATAATGGCTCCTC............................2153.2016000016000000000000
.............................................................................................................................................................................................................................................................................................CTCACT---------------------------------------------------TCCTCCAATAAT....................................1863.1719000019000000000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCA.........................................2063.1719000017000000020000
..............................................................................................................................................................................................................................................................................................TCACT---------------------------------------------------TCCTCCAATAATGG..................................1973.1422000022000000000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTGGC.......................................................................................................................2913.00300010001010000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCC..........................................1963.0018000117000000000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTGGCA-------...............................................................................................................3013.00300000010200000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAAT.......................................2162.8317000017000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GACCTC------GTGCCACCCAGTCGT.2122.50500000010103000000
...................................................................................................................................................................................................................................................AGCTT----CTTCATTTCCTTTATTGGCA-------GA.............................................................................................................2712.00200000002000000000
................................................................................................................................................................................................................................................................ATTTCCTTTATTGGCA-------...............................................................................................................1612.00200000020000000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCT................................2952.001000010000000090000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGACCTC------GTGCCACCCAGTC...2412.00200000001100000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTT..............................................................................................................................2212.00200000010000010000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCA.....................................................................................................................................1522.00400000001003000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCT...............................................................................................................................2112.00200000000002000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATG...................................2562.001200000054210000000
...............................................................................................................TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTGGCA-------GA.............................................................................................................2912.00200000000200000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................2462.001200010014321000000
.................................................................................................................................................................................................................................................................................................................................................................TGGCTCCTCGACCTC------GTGCCACCCA......2512.00200020000000000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAATGGCTC...............................2661.831100030002201030000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------................................................1861.50900000002016000000
...........................................................................................................................................................................................................................................................................................TACTCACT---------------------------------------------------TCCTCCAATAATGGCTC...............................2561.50900010001003031000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAA.....................................2361.50900010030120011000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATA......................................2261.33800020011220000000
...................................................................................................................................................................................................................................................AGCTT----CTTCATTTCCTTTATTGGCA-------...............................................................................................................2511.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................TCGACCTC------GTGCCACCCAGTCGT.2311.00100000000001000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTAA...........................................................................................................................2511.00100000000000010000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTGA........................................................................................................................2811.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................ACCTC------GTGCCACCCAGTCGTT2121.00200000000002000000
..........................................................................................................................................................................................................................................................................................................................................................................GACCTC------GTGCCACCCAGTCG..2021.00200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGACCTC------GTGCCACCCAGTCG..2511.00100000010000000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTG.........................................................................................................................2711.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................CCTCCAATAATGGCTCCTCGACCTC------G...............2611.00100010000000000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTT.............................................................................................................................2311.00100000000100000000
...................................................................................................................................................................................................................................................AGCTT----CTTCATTTCCTTTATTGGC.......................................................................................................................2411.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGACCTC------GTGCCACCCAGTCGTT2711.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................TCCAATAATGGCTCCTCGACCTC------GTGC............2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................ATGGCTCCTCGACCTC------GTGCCACCCA......2611.00100000000100000000
...............................................................................................................TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCCTTTATTGGC.......................................................................................................................2611.00100010000000000000
.................................................................................................................................................................................................................................................................TTTCCTTTATTGGCA-------GACTTACTCAC....................................................................................................2611.00100000000100000000
..TAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTCC................................................................................................................................2011.00100000000001000000
.........................................................................................................................................................................................................................................................................................CTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................2560.83500000011010020000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TC..............................................2060.83500000000003020000
...........................................................................................................................................................................................................................................................................................TACTCACT---------------------------------------------------TCCTCCAATAATGGCTCC..............................2660.83500110001001010000
..............................................................................................................................................................................................................................................................................CA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................2950.80400010010000020000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAT.....................................2450.80400000000000040000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCA................................2950.80400010000000030000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAA....................................2550.80400020000000020000
............................................................................................................................................................................................................................................................................GGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAA.....................................2750.60300000000000030000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGG..................................2750.60300020000000010000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATA......................................2850.60300020000010000000
.............................................................................................................................................................................................................................................................................................................................................................................CTC------GTGCCACCCAGTCGT.1870.57400000000004000000
...........................................................................................................................................................................................................................................................................................................................................................................ACCTC------GTGCCACCCAGT....1720.50100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................CGACCTC------GTGCCACCCAGTCGT.2220.50100000000001000000
CATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTC.................................................................................................................................2120.50100000000000010000
.ATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATT...................................................................................................................................1820.50100000000001000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTC...............................2960.50300000002000010000
..........................................................................................................................................................................................................................................................................................................................................................................GACCTC------GTGCCACCCAGT....1820.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................TC------GTGCCACCCAGTCGT.1770.43300000000003000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGCCACCCAGTCGT.1570.43300000000003000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATA......................................2750.40200010000000010000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAA........................................2650.40200010000000010000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCAA...............................3050.40200000000000002000
............................................................................................................................................................................................................................................................................GGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAA........................................2450.40200000000000020000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAA.....................................2850.40200010000010000000
......................................................................................................................................................................................................................................................................................................................................................TCCTCCAATAATGGCTC...............................1780.38300000000003000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCTCC..........................................2360.33200010000000010000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCA.............................................2060.33200000000000020000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCAC....................................................................................................1660.33200000000002000000
......................................................................................................................................................................................................................................................................TTTATTGGCA-------GACTTACTCACA---------------------------------------------------................................................2260.33200000020000000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGA.................................2760.33200000020000000000
........................................................................................................................................................................................................................................................................TATTGGCA-------GACTTACTCACT---------------------------------------------------................................................2060.33200000000200000000
........................................................................................................................................................................................................................................................................................ACTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................2660.33200010001000000000
.........................................................................................................................................................................................................................................................................ATTGGCA-------GACTTACTCACT---------------------------------------------------TCCT............................................2360.33200200000000000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGA..................................2660.33200000010010000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAAA.......................................1870.29200000000200000000
...............................................................................................................................................................................................................................................................................................................................................................................C------GTGCCACCCAGTCGT.1670.29200000000002000000
............................................................................................................................................................................................................................................................................................ACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTC............................2740.25100010000000000000
...........................................................................................................................................................................................................................................................................................TACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCT.............................2740.25100000000000010000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAAC...................................2650.20100000000000010000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAAA...................................2650.20100000000000010000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGT.................................2850.20100000001000000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATATA....................................2550.20100010000000000000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAA.....................................2950.20100000000000010000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTC...............................3050.20100000000000001000
..............................................................................................................................................................................................................................................................................................TCACT---------------------------------------------------TCCTCCAATAATGGCTCCTC............................2550.20100010000000000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATAAA.................................2850.20100000000000010000
..............................................................................................................................................................................................................................................................................................TCACT---------------------------------------------------TCCTCCAATAATGGCTCCT.............................2450.20100000000001000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGA.................................2850.20100010000000000000
............................................................................................................................................................................................................................................................................GGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAAA.......................................2550.20100000000000010000
..................................................................................................................................................................................................................................................................................................T---------------------------------------------------TCCTCCAATAATGGCTCCT.............................2050.20100000000001000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGAA................................2950.20100010000000000000
..............................................................................................................................................................................................................................................................................CA-------GACTTACTCACT---------------------------------------------------TCCTCCAATA......................................2450.20100000000010000000
..............................................................................................................................................................................................................................................................................CA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAT....................................2650.20100000000100000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAAAC..................................2750.20100000000000001000
..............................................................................................................................................................................................................................................................................CA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGG..................................2850.20100000000010000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAC.....................................2450.20100000000000001000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCA.............................................2160.17100000000000010000
........................................................................................................................................................................................................................................................................TATTGGCA-------GACTTACTCACT---------------------------------------------------T...............................................2160.17100000010000000000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCT............................................1760.17100000000001000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAATGA..................................2360.17100000001000000000
......................................................................................................................................................................................................................................................................TTTATTGGCA-------GACTTACTCACT---------------------------------------------------TC..............................................2460.17100000000100000000
...........................................................................................................................................................................................................................................................................................TACTCACT---------------------------------------------------TCCTCCAATAATGGCT................................2460.17100000000001000000
.......................................................................................................................................................................................................................................................................TTATTGGCA-------GACTTACTCACT---------------------------------------------------................................................2160.17100000001000000000
.........................................................................................................................................................................................................................................................................................CTTACTCACT---------------------------------------------------TCCTCCAATAATGGA.................................2560.17100000000010000000
............................................................................................................................................................................................................................................................................................ACTCACT---------------------------------------------------TCCTCCAATAATGGCTC...............................2460.17100010000000000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TC..............................................1960.17100000000000010000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCCT............................................2260.17100000000000010000
........................................................................................................................................................................................................................................................................................ACTTACTCACT---------------------------------------------------TCCTCCAATAATGGT.................................2660.17100000001000000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCT............................................2160.17100010000000000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCT................................2860.17100000001000000000
......................................................................................................................................................................................................................................................................TTTATTGGCA-------GACTTACTCAC....................................................................................................2160.17100000000000100000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCA.....................................................................................................1560.17100000000001000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCTT...........................................2260.17100000000000010000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCA.....................................................................................................1660.17100000000001000000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCC..........................................2460.17100000000010000000
............................................................................................................................................................................................................................................................................................ACTCACT---------------------------------------------------TCCTCCAATAA.....................................1860.17100000000001000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCC..............................2760.17100000001000000000
............................................................................................................................................................................................................................................................................................ACTCACT---------------------------------------------------TCCTCCAATAATGGCTCAA.............................2660.17100000000000010000
...........................................................................................................................................................................................................................................................................................TACTCACT---------------------------------------------------TCCTCCAAT.......................................1760.17100000000001000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAAA....................................2460.17100000000010000000
.........................................................................................................................................................................................................................................................................ATTGGCA-------GACTTACTCACT---------------------------------------------------T...............................................2060.17100000000000001000
..............................................................................................................................................................................................................................................................................CA-------GACTTACTCACT---------------------------------------------------TCCTCCA.........................................2160.17100100000000000000
...........................................................................................................................................................................................................................................................................................TACTCACT---------------------------------------------------TCCTCCAATAATGG..................................2260.17100000000010000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCT.............................................2060.17100000000001000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCAA............................................2160.17100000000000010000
.........................................................................................................................................................................................................................................................................ATTGGCA-------GACTTACTCACT---------------------------------------------------................................................1960.17100000000001000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCA.........................................2460.17100010000000000000
.......................................................................................................................................................................................................................................................................TTATTGGCA-------GACTTACTCACT---------------------------------------------------TC..............................................2360.17100000001000000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAATGGCT................................2560.17100000001000000000
............................................................................................................................................................................................................................................................................................ACTCACT---------------------------------------------------TCCTCCAATAATGGCTCC..............................2560.17100000001000000000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACT---------------------------------------------------TCCTC...........................................2360.17100000000000010000
......................................................................................................................................................................................................................................................................TTTATTGGCA-------GACTTACTCACT---------------------------------------------------TCC.............................................2560.17100000001000000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAATGG..................................2360.17100000010000000000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------................................................1760.17100000000001000000
...........................................................................................................................................................................................................................................................................................TACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................2360.17100000000100000000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAAT....................................2160.17100000000001000000
.........................................................................................................................................................................................................................................................................................CTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTC...............................2760.17100100000000000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAA........................................2060.17100000010000000000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCA................................2860.17100000000000010000
......................................................................................................................................................................................................................................................................TTTATTGGCA-------GACTTACTCACT---------------------------------------------------................................................2260.17100000001000000000
...............................................................................................................................................................................................................................................................................................CACT---------------------------------------------------TCCTCCAATAATGGCTCC..............................2270.14100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................TC------GTGCCACCCAGTCG..1670.14100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................CCTC------GTGCCACCCAGTCGTT2070.14100000000001000000
..............................................................................................................................................................................................................................................................................................TCACT---------------------------------------------------TCCTCCAATAATGGCTCC..............................2370.14100000000000010000
..................................................................................................................................................................................................................................................................................................T---------------------------------------------------TCCTCCAATAATGGCT................................1780.13100000000001000000
..........................................................................................................................................................................................................................................................................TTGGCA-------GACTTACTCACA---------------------------------------------------AA..............................................20200.05100000000000010000
droSec2
CATAC----------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------AGCTT----CTTCATTTC-TTTATTGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCCTCGTCCTC------GTGCCACACAGTCGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................28202.555151000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACACAGTCGT.26101.601614020
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAATGGC.................................27201.553131000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAT....................................25200.901818000
......................................................................................................................................................................................................................................................................................................................................................................CCTCGTCCTC------GTGCCACACAGTCGT.25100.4044000
...........................................................................................................................................................................................................................................................................TGGCA-------GACTTACTCACT---------------------------------------------------TCCTCCAA........................................25200.3066000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATAAT....................................24200.3066000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACACAGTC...24100.2022000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACACAGTCG..25100.2022000
.......................................................................................................................................................................................................................................................................................GACTTACTCACT---------------------------------------------------TCCTCCAATA......................................22200.2044000
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCCTC------GTGCCACACAGTCGTT2790.1111000
..........................................................................................................................................................................................................................................................................................................................................................................GTCCTC------GTGCCACACAGTCGT.21100.1010010
....................................................................................................................................................................................................................................................................................................................................................................CTCCTCGTCCTC------GTGCCACACAGTCGT.27100.1010010
.......................................................................................................................................................................................................................................................................................................................................................................CTCGTCCTC------GTGCCACACAGTCGT.24100.1010010
.................................................................................................................................................................................................................................................................................................................................................................TGGCTCCTCGTCCTC------GTGCCACACAGT....27100.1011000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAATA...................................26200.0511000
..............................................................................................................................................................................................................................................................................................................................................................TAATGGCTCCTCGTCCTC------GTGCCAC.........25200.0511000
.........................................................................................................................................................................................................................................................................................................................................................TCCAATAATGGCTCCTCGTCCTC------GTGCC...........28200.0511000
..................................................................................................................................................................................................................................................................................................T---------------------------------------------------TCCTCCAATAATGGCTCCTCGTCC........................25200.0511000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAAT.......................................22200.0511000
..................................................................................................................................................................................................................................................................................................T---------------------------------------------------TCCTCCAATAATGGCTCCTCGTCCTC------................27200.0511000
..................................................................................................................................................................................................................................................................................................T---------------------------------------------------TCCTCCAATAATGGCTCCTCGTC.........................24200.0511000
.........................................................................................................................................................................................................................................................................................................................................................TCCAATAATGGCTCCTCGTCCTC------GTGC............27200.0510001
.........................................................................................................................................................................................................................................................................................................................................................TCCAATAATGGCTCCTCGTCC........................21200.0511000
..........................................................................................................................................................................................................................................................................................TTACTCACT---------------------------------------------------TCCTCCAATAATGGCTCC..............................27200.0511000
...............................................................................................................................................................................................................................................................................A-------GACTTACTCACT---------------------------------------------------TCCTCCAATAAA....................................25200.0511000
droYak3
GTCCA----------------------------------------------------------------------------------------------------------ATT----------------------------------------------------------------------------CGTAGTT------------T-------------TACCAGTACTTA---TT-----TTCG---CTT--CTC-----------------------------------T---CTCTATCCA-ATTCCTCCAGTCATATCAAG-------------------CACGATGTCTCCACGTCCGC------ACAGCGCCACCACATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................TCATATCAAG-------------------CACGATGTCTCCACGTC.........................2790.11101000000000
droEre2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTCCTCTTCCTC------GTGCCACCCAGTCCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 03:03 AM