ID:

dps_2065

 Coordinate:

Unknown_group_526:1481-1631 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.8 -14.5 -14.4 -14.2

Flybase annnotation

CDS [Dpse\GA29279-cds]; exon [dpse_GLEANR_9872:2]; intron [Dpse\GA29279-in]

No Repeatable elements found

mature
  1. Unknown_group_422:32875-32898 -
  2. dps_2065  Unknown_group_526:1514-1537 -
  3. Unknown_singleton_761:2246-2269 +
  4. 3:8453-8476 -
  5. Unknown_singleton_780:44343-44366 +
  6. Unknown_singleton_780:68052-68075 -
  7. Unknown_singleton_780:84522-84545 -
  8. Unknown_singleton_780:96324-96347 -
  9. Unknown_group_206:52750-52773 -
  10. Unknown_group_206:63578-63601 -
  11. Unknown_group_206:71459-71482 +
  12. Unknown_group_171:33703-33726 +
  13. Unknown_group_666:9892-9915 +
  14. Unknown_group_666:21512-21535 +
  15. Unknown_group_666:42989-43012 +
  16. Unknown_group_530:3744-3767 +
  17. XL_group1a:4222836-4222859 -
  18. Unknown_singleton_2058:251-274 -
  19. Unknown_singleton_1137:533-556 -
  20. Unknown_singleton_3234:237-260 -
  21. Unknown_singleton_761:12666-12689 +
  22. Unknown_singleton_762:35086-35109 +
  23. Unknown_singleton_780:452-475 +
  24. Unknown_singleton_780:11517-11540 +
  25. Unknown_singleton_780:22010-22033 +
  26. Unknown_singleton_780:54490-54513 +
  27. Unknown_group_206:82001-82024 +
  28. Unknown_singleton_760:10688-10711 +
  29. Unknown_group_171:13022-13045 +
  30. Unknown_group_171:42620-42643 +
  31. Unknown_group_666:32066-32089 +
  32. Unknown_singleton_1988:583-606 +
  33. Unknown_singleton_762:2661-2684 +
  34. Unknown_singleton_762:12920-12943 +
  35. Unknown_singleton_762:24424-24447 +
  36. Unknown_singleton_760:425-448 +
  37. Unknown_singleton_1998:198-221 +
star
  1. dps_2065  Unknown_group_526:1561-1585 -
  2. XL_group1a:4222885-4222909 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACTATCGACCAGGACCCCAAGCAGCAAGGACGCTTCCACTGGACAACCGTGTTAACCGTGCTTACGCCGCGCTTCCGTGACTAGCCCCAAGGTCTCCGGTATTCAGTGCGTTACCTAAGAAGGGTCTACCGAAGGGTCAATACGTGATACTACCGTCGGAAACGCGAAAGACGCCACCGTGATTCGACATGGGGGTACAGTGGATTTCGTATCGAAGGACGAATTGCAGGCCATCGCAGCCGAATTCGGC
************************************************************************************************.......((...((((..((...((..(((.......((..(((.....)))..))))).))))..))))))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 M059
embryo
 GSM343916
embryo
 V112
male body
...TATCGACCAGGACCCCAAGCAG.................................................................................................................................................................................................................................. 22 0 6 3.67 22 4 12 6 0 0 0
...TATCGACCAGGACCCCAAGCAGCAAG.............................................................................................................................................................................................................................. 26 0 6 3.67 22 0 18 4 0 0 0
................................................................................................................................................GTGATACTACCGTCGGAAACGCGA................................................................................... 24 0 20 3.35 67 67 0 0 0 0 0
..............................................ACCGTGTTAACCGTGCTTACGCCGC.................................................................................................................................................................................... 25 0 3 2.67 8 7 0 0 1 0 0
..............................................ACCGTGTTAACCGTGCTTACGCC...................................................................................................................................................................................... 23 0 3 2.33 7 7 0 0 0 0 0
..............................................ACCGTGTTAACCGTGCTTACGCCGCGC.................................................................................................................................................................................. 27 0 3 2.33 7 7 0 0 0 0 0
..............................................ACCGTGTTAACCGTGCTTACGCCG..................................................................................................................................................................................... 24 0 3 1.67 5 5 0 0 0 0 0
..............................................ACCGTGTTAACCGTGCTTACGC....................................................................................................................................................................................... 22 0 3 1.67 5 5 0 0 0 0 0
...TATCGACCAGGACCCCAAGCAGCAA............................................................................................................................................................................................................................... 25 0 6 1.00 6 4 2 0 0 0 0
...TATCGACCAGGACCCCAAGCAGCAAGG............................................................................................................................................................................................................................. 27 0 6 1.00 6 0 3 3 0 0 0
......CGACCAGGACCCCAAGCAGCAAGGACG.......................................................................................................................................................................................................................... 27 0 6 1.00 6 0 1 5 0 0 0
.....TCGACCAGGACCCCAAGCAGCAAGGA............................................................................................................................................................................................................................ 26 0 7 0.86 6 1 3 2 0 0 0
GACTATCGACCAGGACCCCAAGCAG.................................................................................................................................................................................................................................. 25 0 6 0.67 4 1 2 1 0 0 0
..............................................ACCGTGTTAACCGTGCTTACGCCGCG................................................................................................................................................................................... 26 0 3 0.67 2 2 0 0 0 0 0
...............................................................................................................................................CGTGATACTACCGTCGGAAACGC..................................................................................... 23 0 20 0.60 12 0 11 0 1 0 0
......CGACCAGGACCCCAAGCAGCAAGG............................................................................................................................................................................................................................. 24 0 7 0.57 4 0 0 4 0 0 0
..............................................................................................................................................................................................TGGGGGTACAGTGGATTTCGTATCGA................................... 26 0 2 0.50 1 1 0 0 0 0 0
................................................................................................CCGGTATTCAGTGCGTTACCTAAGA.................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
..............................................................TTACGCCGCGCTTCCGTGACTAGCC.................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 1 0 0
.....TCGACCAGGACCCCAAGCAGCAAG.............................................................................................................................................................................................................................. 24 0 7 0.43 3 0 1 2 0 0 0
......CGACCAGGACCCCAAGCAGCAAGGAC........................................................................................................................................................................................................................... 26 0 7 0.43 3 0 3 0 0 0 0
..........................................................................TCCGTGACTAGCCCCAAGG.............................................................................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0
...TATCGACCAGGACCCCAAGCAGCA................................................................................................................................................................................................................................ 24 0 6 0.33 2 2 0 0 0 0 0
................................................CGTGTTAACCGTGCTTACGCCGCGC.................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
................................................CGTGTTAACCGTGCTTACGCCG..................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
..............................................ACCGTGTTAACCGTGCTTAC......................................................................................................................................................................................... 20 0 3 0.33 1 0 0 0 1 0 0
............................................CAACCGTGTTAACCGTGCTTACGCC...................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
...............................................CCGTGTTAACCGTGCTTACGCCGC.................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
.........................................................................TTCCGTGACTAGCCCCAAGG.............................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0
.............................................AACCGTGTTAACCGTGCTTACGCC...................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
...TATCGACCAGGACCCCAAGCAGC................................................................................................................................................................................................................................. 23 0 6 0.33 2 1 0 1 0 0 0
.....................................................................GCGCTTCCGTGACTAGCCCCAAGG.............................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0 0
..............................................ACCGTGTTAACCGTGCTTACGCCGCGCT................................................................................................................................................................................. 28 0 3 0.33 1 1 0 0 0 0 0
.........................................................................TTCCGTGACTAGCCCCAAGA.............................................................................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0
...............................................CCGTGTTAACCGTGCTTACGC....................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
..................................................TGTTAACCGTGCTTACGCCGCGCTT................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0 0
......CGACCAGGACCCCAAGCAGCAAG.............................................................................................................................................................................................................................. 23 0 7 0.29 2 1 1 0 0 0 0
.....TCGACCAGGACCCCAAGCAGCAAGGAC........................................................................................................................................................................................................................... 27 0 7 0.29 2 0 2 0 0 0 0
...............................................................................................................................................CGTGATACTACCGTCGGAAACGCG.................................................................................... 24 0 20 0.25 5 0 5 0 0 0 0
...............................................................................................................................................CGTGATACTACCGTCGGGAACGC..................................................................................... 23 1 20 0.20 4 0 0 4 0 0 0
...TATCGACCAGGACTTAAAGCAG.................................................................................................................................................................................................................................. 22 3 6 0.17 1 0 1 0 0 0 0
...TATCGACCAGGACCCCAAGCAGA................................................................................................................................................................................................................................. 23 1 6 0.17 1 0 1 0 0 0 0
...TATCGACCAGGACCCCAAGCGG.................................................................................................................................................................................................................................. 22 1 6 0.17 1 0 0 1 0 0 0
......CGACCAGGACCCCAAGCAGCAAGGACGC......................................................................................................................................................................................................................... 28 0 6 0.17 1 0 1 0 0 0 0
...TATCGACCAGGACTTCAAGCAG.................................................................................................................................................................................................................................. 22 2 6 0.17 1 0 1 0 0 0 0
...TATCGACCAGGACCCCAAGCAGCAAGGAC........................................................................................................................................................................................................................... 29 0 6 0.17 1 0 0 0 1 0 0
...TATCGACCAGGACCCCAAGCAGCAAGGA............................................................................................................................................................................................................................ 28 0 6 0.17 1 1 0 0 0 0 0
...TATCGACCAGGACCCCAAGC.................................................................................................................................................................................................................................... 20 0 6 0.17 1 0 0 0 0 1 0
.ACTATCGACCAGGACCCCA....................................................................................................................................................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0
................................................................................................................................................GTGATACTACCGTCGGAAACGCGAAAGA............................................................................... 28 0 20 0.15 3 3 0 0 0 0 0
...............................................................................................................................................CGTGATACTACCGTCGGAA......................................................................................... 19 0 20 0.15 3 3 0 0 0 0 0
....ATCGACCAGGACCCCAAGCAGCA................................................................................................................................................................................................................................ 23 0 7 0.14 1 1 0 0 0 0 0
.....TCGACCAGGACCCCAAGCAGCAA............................................................................................................................................................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0
.....TCGACCAGGACCCCAAGCAG.................................................................................................................................................................................................................................. 20 0 7 0.14 1 0 0 1 0 0 0
.....TCGACCAGGACCCCAAGCAGCAAGG............................................................................................................................................................................................................................. 25 0 7 0.14 1 1 0 0 0 0 0
..........CAGGACCCCAAGCAGCAAGGACG.......................................................................................................................................................................................................................... 23 0 8 0.13 1 1 0 0 0 0 0
...........AGGACCCCAAGCAGCAAGGACG.......................................................................................................................................................................................................................... 22 0 8 0.13 1 0 1 0 0 0 0
..........CAGGACTCCAAGCAGCAAGGACGC......................................................................................................................................................................................................................... 24 1 8 0.13 1 0 1 0 0 0 0
..........CAGGACCCCAAGCAGCAAGGACGC......................................................................................................................................................................................................................... 24 0 8 0.13 1 0 1 0 0 0 0
.........CCAGGACCCCAGGCAGCAAGGGCGT......................................................................................................................................................................................................................... 25 3 8 0.13 1 0 0 0 0 1 0
.......GACCAGGACCCCAAGCAGCAAGGAC........................................................................................................................................................................................................................... 25 0 9 0.11 1 0 1 0 0 0 0
...........AGGACCCCAAGCAGCAAGGAC........................................................................................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0 0 0
..........CAGGACCCCAAGCAGCAAGG............................................................................................................................................................................................................................. 20 0 9 0.11 1 1 0 0 0 0 0
................................................................................................................................................GTGATACTACCGTCGGAAAC....................................................................................... 20 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................................................TGATACTACCGTCGGAAACGCGAAAG................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................TCAATACGTGATACTACCGTCGGAA......................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................GTGATACTACCGTCGGAAACGA..................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
...............................................................TACGCCGTGCTTCCGTGACTAGCCCCA................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................CGTGACACTACCGTCGGAAACGCG.................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
................................................GGTGTTCACCGTGCTGACG........................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................TTCGACATGGGGGTACAGTG................................................ 20 0 20 0.05 1 1 0 0 0 0 0
......................................................................TGCTTCCGTGACTAGCCCCA................................................................................................................................................................. 20 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................TACTACCGTCGGAAACGCGAAAGA............................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................GTGATACTACTGTCGGAAACACGA................................................................................... 24 2 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................GTGATACTACCGTCGGAAACGC..................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0
.............................................................................................................................................TACGTGATACTACCGCCGGAAAC....................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................TACGTGATACTACCGCCGGAAACGC..................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................CGTGATACTACCGTCGGAAACGCGAAA................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................................................GTGATACTACCGTCGGAAACCCGA................................................................................... 24 1 20 0.05 1 0 0 0 0 0 1
...............................................................................................................................................CGTGGTACTACCGTCGGAAACGCG.................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................GTGATACTACCGTCGGGAACGCGA................................................................................... 24 1 20 0.05 1 0 0 0 0 0 1
............................................................................................................................................ATACGTGATACTACCGTCGGAAACG...................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CTGATAGCTGGTCCTGGGGTTCGTCGTTCCTGCGAAGGTGACCTGTTGGCACAATTGGCACGAATGCGGCGCGAAGGCACTGATCGGGGTTCCAGAGGCCATAAGTCACGCAATGGATTCTTCCCAGATGGCTTCCCAGTTATGCACTATGATGGCAGCCTTTGCGCTTTCTGCGGTGGCACTAAGCTGTACCCCCATGTCACCTAAAGCATAGCTTCCTGCTTAACGTCCGGTAGCGTCGGCTTAAGCCG
***********************************************************************************.......((...((((..((...((..(((.......((..(((.....)))..))))).))))..))))))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 GSM343916
embryo
 V112
male body		 SRR902012
CNS imaginal disc
 GSM444067
head
...................................AGGTGACCTGTTGGCACAATT................................................................................................................................................................................................... 21 0 2 8.50 17 10 6 1 0 0 0 0 0
..............................................................................................GAGGCCATAAGTCACGCAATGGATT.................................................................................................................................... 25 0 3 7.67 23 19 1 1 1 1 0 0 0
..............................................................................................GAGGCCATAAGTCACGCAATGGAT..................................................................................................................................... 24 0 3 7.00 21 16 4 1 0 0 0 0 0
..............................................................................................GAGGCCATAAGTCACGCAATGGATTCT.................................................................................................................................. 27 0 2 7.00 14 12 0 0 1 1 0 0 0
................................................................................................................................GGCCTTCCCAGTTATGCACTATGATG................................................................................................. 26 2 1 7.00 7 7 0 0 0 0 0 0 0
................................................................................................................................GGCCTTCCCAGTTATGCACTATGAT.................................................................................................. 25 2 1 6.00 6 4 2 0 0 0 0 0 0
..................................AAGGTGACCTGTTGGCACAATT................................................................................................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACCTAAAGCATA...................................... 27 0 20 3.90 78 64 1 0 13 0 0 0 0
............................................................................................................................................................................................GTACCCCCATGTCACCTAAAGCAT....................................... 24 0 20 3.85 77 74 1 0 2 0 0 0 0
.................................AAAGGTGACCTGTTGGCACAATT................................................................................................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................................................................................................................GTACCCCCATGTCACCTAAAGCATA...................................... 25 0 20 2.55 51 50 0 0 1 0 0 0 0
................................................................................................GGCCATAAGTCACGCAATGGATTCTT................................................................................................................................. 26 0 2 2.00 4 4 0 0 0 0 0 0 0
..................................................................CGGCGCGAAGGCACTGATCGGGGT................................................................................................................................................................. 24 0 2 2.00 4 0 0 4 0 0 0 0 0
...........................................................................................................................................................................................TGTACCCCCATGTCACCTAAAGCATA...................................... 26 0 20 1.65 33 25 4 0 4 0 0 0 0
...................................................................GGCGCGAAGGCACTGATCGGGGT................................................................................................................................................................. 23 0 2 1.50 3 1 0 1 0 0 1 0 0
...................................AGGTGACCTGTTGGCACAAT.................................................................................................................................................................................................... 20 0 2 1.50 3 3 0 0 0 0 0 0 0
..............................................................................................GAGGCCATAAGTCACGCAATGGATTC................................................................................................................................... 26 0 3 1.33 4 4 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACCCCCATGTCACCTAAAGCAT....................................... 23 0 20 1.05 21 17 0 4 0 0 0 0 0
..................................................................................................................................CCTTCCCAGTTATGCACTATGAT.................................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................AAAGGTGACCTGTTGGCACAATTGGC................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................................................................GGCCTTCCCAGTTATGCACTATGATGGC............................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................AGAGGCCATAAGTCACGCAATGGATT.................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................GCCTTCCCAGTTATGCACTATGAT.................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................GAGGCCATAAGTCACGCAATGGATTCTT................................................................................................................................. 28 0 2 1.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................CACTAAGCTGTACCCCCATGTCACCT.............................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................GCCTTCCCAGTTATGCACTATGATG................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................AGAGGCCATAAGTCACGCAATGGATTCT.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................GCGGCGCGAAGGCACTGATCGGGGT................................................................................................................................................................. 25 0 2 1.00 2 1 0 1 0 0 0 0 0
................................................................................................................................GGCCTTCCCAGTTATGCACTATGA................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................GCCTTCCCAGTTATGCACTATGATGG................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................TCTTCCCAGTTATGCACTATGATG................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................GGCTTCCCAGTTATGCACTATGAT.................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................AAGGTGACCTGTTGGCACAAT.................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................CTTCCCAGTTATGCACTATGATGGC............................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................TGATCGGGGTTCCTGAGGCCATAAGT................................................................................................................................................. 26 1 20 0.90 18 18 0 0 0 0 0 0 0
....................................GGTGACCTGTTGGCACAATT................................................................................................................................................................................................... 20 0 13 0.85 11 11 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACCTAAAGCA........................................ 25 0 20 0.75 15 14 0 0 1 0 0 0 0
...ATAGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 24 0 6 0.67 4 4 0 0 0 0 0 0 0
..GATAGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 25 0 6 0.67 4 4 0 0 0 0 0 0 0
...................................................................GGCGCGAAGGCACTGATCGCGGTT................................................................................................................................................................ 24 1 3 0.67 2 2 0 0 0 0 0 0 0
...............................................................................................AGGCCATAAGTCACGCAATGGATT.................................................................................................................................... 24 0 3 0.67 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACCTAAAGCAT....................................... 26 0 20 0.65 13 0 7 2 0 4 0 0 0
...............................AAAAAGGTGACCTGTTGGCACAATT................................................................................................................................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................GGCCATAAGTCACGCAATGGATTCT.................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................AGGGGACCTGTTGGCACAATT................................................................................................................................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TGTACCCCCATGTCACCTAAAGCAT....................................... 25 0 20 0.50 10 0 1 0 7 0 1 0 1
..................................................................................................CCATAAGTCACGCAATGGATTCTT................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................AGTCACGCAATGGATTCTT................................................................................................................................. 19 0 2 0.50 1 0 0 0 0 1 0 0 0
.................................................................................................GCCATAAGTCACGCAATGGATTCT.................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................AGGCCATAAGTCACGCAATGGATTCT.................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................CACGAATGCGGCGCGAAGGCACTGAT....................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................AGGTGACCTGTTGGCACAATTGG................................................................................................................................................................................................. 23 0 2 0.50 1 0 0 0 0 0 1 0 0
..............................................................AATGCGGCGCGAAGGCACTGATC...................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................AGGTGACCTGTTGGCACAATTGGCA............................................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0
.......................................GACCTGTTGGCACAATTGGCACGAAT.......................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0
...........................................................ACGAATGCGGCGCGAAGGCACTGAT....................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................GACCTGTTGGCACAATTGGCACGA............................................................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................GGCGCGAAGGCACTGATCGGGGTT................................................................................................................................................................ 24 0 2 0.50 1 0 0 1 0 0 0 0 0
...............................................................................................AGGCCATAAGTCACGCAGTGGATTCTT................................................................................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................GGGGCGCGAAGGCACTGATCGGGGT................................................................................................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0 0
...................................AGGTGACCTGTTGGCACAATTGGCAC.............................................................................................................................................................................................. 26 0 2 0.50 1 0 0 0 0 1 0 0 0
..................................................................CGGCGCGAAGGCACTGAT....................................................................................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0
....................................TGTGACCTGTTGGCACAATTGGCACGA............................................................................................................................................................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0
.....................................GTGACCTGTTGGCACAATTGGCACGAAT.......................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................ATGCGGCGCGAAGGCACTGATC...................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0
.......CTGGTCCTGGGGTTCGTCGTTCCT............................................................................................................................................................................................................................ 24 0 9 0.44 4 4 0 0 0 0 0 0 0
.........GGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 18 0 9 0.44 4 3 0 0 0 1 0 0 0
.....AGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 22 0 7 0.43 3 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCTGTACCCCCATGTCACCTAA............................................ 24 0 20 0.40 8 6 0 0 2 0 0 0 0
............................................................................................................................................................................................GTACCCCCATGTCACCTAAAGCA........................................ 23 0 20 0.40 8 8 0 0 0 0 0 0 0
........................................................................AAAGGCACTGATCGGGGT................................................................................................................................................................. 18 1 3 0.33 1 0 0 1 0 0 0 0 0
..............................................................................................GAGGCCATAAGTCACGCAATGGA...................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0
.........GGTCCTGGGGTTCGTCGTTCCT............................................................................................................................................................................................................................ 22 0 9 0.33 3 3 0 0 0 0 0 0 0
................................................................TGCGGCGCGAAGGCACTGATCGCGGT................................................................................................................................................................. 26 1 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................CCGAAGGCACTGATCGGGGTTC............................................................................................................................................................... 22 1 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................AGGCGCGGAGGCACTGATC...................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
....................................................................GCGCGAAGGCACTGATCGCGGTT................................................................................................................................................................ 23 1 3 0.33 1 1 0 0 0 0 0 0 0
.............................................................................................CGAGGCCATAAGTCACGCAATGGATT.................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................CGGAGGCACTGATCGGGGT................................................................................................................................................................. 19 1 3 0.33 1 1 0 0 0 0 0 0 0
..............................................................................................GAGGCCATAAGTCACGCAGTGGATT.................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0
................................................................................................GGCCATAAGTCACGCAATGGATT.................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................GCGAAGGCACTGATCGGGGT................................................................................................................................................................. 20 0 3 0.33 1 0 0 1 0 0 0 0 0
....................................................................................CGGGGTTACGGAGGCCATAAGT................................................................................................................................................. 22 2 3 0.33 1 0 0 0 0 1 0 0 0
........................................................GGCACGAATGCGGCGCGAAG............................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0 0
.AGATAGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 26 1 6 0.33 2 2 0 0 0 0 0 0 0
.....................................................................CGCGGAGGCACTGATCGGGGTT................................................................................................................................................................ 22 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................GAAGGCACTGATCGGGGTTCC.............................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0 0
.................................................................................................GCCATAAGTCACGCAATGGAT..................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
............................................................CGAATGCGGCGCGAAGGCACT.......................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
.................................................................GCGGCGCGAAGGCACTGATCGCGGT................................................................................................................................................................. 25 1 3 0.33 1 1 0 0 0 0 0 0 0
................................................................................................GGCCATAAGTCACGCAATGGAT..................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0
....................................GGTGACCTGTTGGCACAAT.................................................................................................................................................................................................... 19 0 13 0.31 4 4 0 0 0 0 0 0 0
.............................................................................................................................................................................................TACCCCCATGTCACCTAAAGCATA...................................... 24 0 20 0.30 6 6 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCCCCATGTCACCTAAAGCATA...................................... 22 0 20 0.30 6 5 0 0 1 0 0 0 0
....TAGCTGGTCCTGGGGTTCGTCGTT............................................................................................................................................................................................................................... 24 0 7 0.29 2 1 0 0 0 0 1 0 0
.....................................GTGACCTGTTGGCACAATT................................................................................................................................................................................................... 19 0 15 0.27 4 4 0 0 0 0 0 0 0
........................................................GGCACGTATGCGGCGCGAAGGCACTGAT....................................................................................................................................................................... 28 1 12 0.25 3 2 0 0 1 0 0 0 0
......................................................................GCGAAGGCACTGATCGCGGT................................................................................................................................................................. 20 1 4 0.25 1 1 0 0 0 0 0 0 0
.................................................................GCGGCACGAAGGCACTGATCGGGGT................................................................................................................................................................. 25 1 20 0.25 5 1 4 0 0 0 0 0 0
..............................................................................................................................................................................................ACCCCCATGTCACCTAAAGCAT....................................... 22 0 20 0.25 5 5 0 0 0 0 0 0 0
.......................................................................CGAAGGCACTGATCGCGGT................................................................................................................................................................. 19 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................TGACCTGTTGGCACAATTGGCACG............................................................................................................................................................................................. 24 0 13 0.23 3 3 0 0 0 0 0 0 0
..........GTCCTGGGGTTCGTCGTTCCT............................................................................................................................................................................................................................ 21 0 9 0.22 2 2 0 0 0 0 0 0 0
........TGGTCCTGGGGTTCGTCGTT............................................................................................................................................................................................................................... 20 0 9 0.22 2 1 0 0 0 1 0 0 0
........TGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 19 0 9 0.22 2 1 0 0 0 1 0 0 0
......................................................................................................................................CCCAGTTATGCACTATGATGGCAGCCT.......................................................................................... 27 0 20 0.20 4 4 0 0 0 0 0 0 0
.........................................................GCACGTATGCGGCGCGAAGGCACTGAT....................................................................................................................................................................... 27 1 12 0.17 2 2 0 0 0 0 0 0 0
.ATATTGCTGGTCCTGGGGTTCGTCGTT............................................................................................................................................................................................................................... 27 3 6 0.17 1 0 0 0 0 1 0 0 0
CTGATAGCTGGTCCTGGGGT....................................................................................................................................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0 0 0
...AAAGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 24 1 6 0.17 1 1 0 0 0 0 0 0 0
.TGATAGCTGGTCCTGGGGT....................................................................................................................................................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................GTACCCCCATGTCACCTAAAGCATC...................................... 25 1 20 0.15 3 0 0 3 0 0 0 0 0
........................................................................................................................................................................................AGCTGTACCCCCATGTCACCTAA............................................ 23 0 20 0.15 3 3 0 0 0 0 0 0 0
......GCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 21 0 7 0.14 1 1 0 0 0 0 0 0 0
....AAGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 23 1 7 0.14 1 0 0 0 0 1 0 0 0
....TAGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 23 0 7 0.14 1 1 0 0 0 0 0 0 0
.....AGCTGGTCCTGGGGTTCGTCGTTCCT............................................................................................................................................................................................................................ 26 0 7 0.14 1 1 0 0 0 0 0 0 0
............................CCTGCGAAGGTGACGCGTTG........................................................................................................................................................................................................... 20 2 7 0.14 1 0 0 0 1 0 0 0 0
..TTTAGCTGGTCCTGGGGTTCGTCGT................................................................................................................................................................................................................................ 25 2 7 0.14 1 1 0 0 0 0 0 0 0
.....CGCTGGTCCTGGGGTTCGTCTT................................................................................................................................................................................................................................ 22 2 7 0.14 1 0 0 0 1 0 0 0 0
.....AGCTGGTCCTGGGGTTCG.................................................................................................................................................................................................................................... 18 0 8 0.13 1 1 0 0 0 0 0 0 0
..................................................................................ATCGAGGTTCCAGAG.......................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1 0
.......CTGGTCCTGGGGTTCGTCGTTCC............................................................................................................................................................................................................................. 23 0 9 0.11 1 1 0 0 0 0 0 0 0
......TCTGGTCCTGGGGTTCGTCTT................................................................................................................................................................................................................................ 21 2 9 0.11 1 0 0 0 1 0 0 0 0
.........GGTCCTGGGGTTCGTCGTTCC............................................................................................................................................................................................................................. 21 0 9 0.11 1 1 0 0 0 0 0 0 0
......................................................................................................................................CCCAGTTATGCACTATGATGGCAGCCTT......................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCCCCATGTCACCTAAAGCAT....................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACTGTACCCCCATGTCACCTAAAGCAT....................................... 27 1 20 0.10 2 2 0 0 0 0 0 0 0
....................................................................................................................................................ATGATGGCAGCCTTTGCGCTT.................................................................................. 21 0 20 0.10 2 0 0 2 0 0 0 0 0
............................................................................................................................................................................................GTACCCCCATGTCACCTAAAGC......................................... 22 0 20 0.10 2 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCTGTACCCCCATGTCACCTA............................................. 23 0 20 0.10 2 2 0 0 0 0 0 0 0
.............................................................GTATGCGGCGCGAAGGCACTGAT....................................................................................................................................................................... 23 1 12 0.08 1 1 0 0 0 0 0 0 0
..................................AGGGTGACCTGTTGGCACAATT................................................................................................................................................................................................... 22 1 12 0.08 1 1 0 0 0 0 0 0 0
....................................GGTGACCTGTTGGCACAATTGGC................................................................................................................................................................................................ 23 0 12 0.08 1 1 0 0 0 0 0 0 0
.............................................................GTATGCGGCGCGAAGGCACTGA........................................................................................................................................................................ 22 1 13 0.08 1 1 0 0 0 0 0 0 0
......................................TGACCTGTTGGCACAATTGGCA............................................................................................................................................................................................... 22 0 13 0.08 1 1 0 0 0 0 0 0 0
.....................................GTGACCTGTTGGCACAATTGGCACG............................................................................................................................................................................................. 25 0 13 0.08 1 1 0 0 0 0 0 0 0
....................................GGTGGCCTGTTGGCACAATT................................................................................................................................................................................................... 20 1 13 0.08 1 0 0 1 0 0 0 0 0
......................................TGACCTGTTGGCACAATTG.................................................................................................................................................................................................. 19 0 15 0.07 1 1 0 0 0 0 0 0 0
.....................................ATGACCTGTTGGCACAATT................................................................................................................................................................................................... 19 1 15 0.07 1 1 0 0 0 0 0 0 0
....................................AGTGACCTGTTGGCACAATT................................................................................................................................................................................................... 20 1 15 0.07 1 1 0 0 0 0 0 0 0
...................................................................GGCTGGAAGGCTCTGATC...................................................................................................................................................................... 18 3 18 0.06 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGTACCCCCATGTCACCT.............................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCTCCTAAAGCAT....................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTCCTGCTTAACGTCCGGTA................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGTACCCCCATGTCACCTAAAGCAT....................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................ATCTGTACCCCCATGTCACCTAAAGCATA...................................... 29 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................CGGCACGAAGGCACTGATCGGGGT................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................AAATGCGGCACGAAGGCACTGAT....................................................................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................CTGATCGGGGTTCCTGAGGCCATAAGTC................................................................................................................................................ 28 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................TGGCGTCCCAGTTATGCACTATGAT.................................................................................................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................TGTACCCCCATGTCACCTAAAGCAGA...................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0
................................................................................TGATCGGGGTTCCTGAGGCCATAAGTC................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................AGCTGTACCCCCATGTCACCTAAAGCATA...................................... 29 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGTACCCCCATGTCACCTAAAGAAT....................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0
................................................................TGCGGCACGAAGGCACTGATCGGGGT................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACCTAAAGAAT....................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TGTACCCCCATGTCACCTA............................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................TGGCGTCCCAGTCATGCACTATGATG................................................................................................. 26 2 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................AGTTATGCACTGTGATGGCAGCCT.......................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCTGTACCCCCATGTCACCTAA............................................ 25 1 20 0.05 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................ACCCCCATGTCACCTAAAGCATAGC.................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................CCCAGTTATGCACTGTGATGGCAGCCTT......................................................................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................................................................CCCAGTTATGCACTGTGATGGCAGCCT.......................................................................................... 27 1 20 0.05 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TTCCTGCTTAACGTCCGGT................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................TGCACTGTGATGGCAGCCTTT........................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................TGATCGGGGTTGCTGAGGCCATAAGT................................................................................................................................................. 26 2 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................................................................................................CCAGTTATGCACTATGATG................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................AACTGTACCCCCATGTCACCTAAAGCAT....................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GCTGTACCCCCATGTCACCTAA............................................ 22 0 20 0.05 1 0 0 0 0 1 0 0 0
...................................................................GGCACGAAGGCACTGATCGGGGT................................................................................................................................................................. 23 1 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................CGTACCCCCATGTCACCTAAAGCAGA...................................... 26 2 20 0.05 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................CCCATGTCACCTAAAGCAT....................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCTGTACCCCCATGTCACCT.............................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................AGAGGCCATAAGTCGCGCAATGGATTC................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAGTACCCCCATGTCACCTAAAGCATA...................................... 27 1 20 0.05 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACCTAATGCATA...................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACTTAAAGCAT....................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TGTACCCCCATATCACCTAAAGCAT....................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0
...........AAATGGGGTTCGTCGTTCCT............................................................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................ACCCCCATGTCACCTAAAGCA........................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACCTAAAGCAGA...................................... 27 1 20 0.05 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................AGCTGTACCCCCATGTCACCTAAAGCAT....................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................TGTACCCCCATGTCAACTAAAGCAGA...................................... 26 2 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................ATTCCTGCTTAACGTCCGGT................. 20 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................TGATCGGGGTTCCTGAGGCCATAAGTCC............................................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTTTACCCCCATGTCACCTAAAGCAT....................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................GTACCCCCATGTCACCTAAAG.......................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................CCCAGTTATGCACTATGATGGCAG............................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTGTACCCCCATGTCACCTAAAGC......................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTCCTGCTTAACGTCCGGT................. 20 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_526:1431-1681 - dps_2065 GACTATCGACCAGGACCCCAAGCAGCAAGGACGCTTCCACTGGACAACCGTGTTAACCGTGCTTACGCCGCGCTTCCGTGACTAGCCCCAAGGTCTCCGGTATTCAGTGCGTTACCTAAGAAGGG--TCTACCGAAGGGTCAATACGTGATACTACCGTCGGAAACGCGAAAGAC-----------------GCCACCGTGATTCGACATGGGGGTACAGTGGATTTCGTATC----GAAGGACGAATTGCAGGCCATCGCAGCCGAATTCGGC---
droPer2 scaffold_5637:457-730 + GACTATCGACCACGACCCCAAGCAGCAAGGACGCTTCCACTGGACAACCGTGTTAACCGTGCATACGCCGCGCTTCCGTGACTAGCCCCAAGGACTCCGGTATTCAGTGCGTTACCTAAGAAAGGATTCTACCGGAGTGTCAATACGTGATACTACCGTCGGGAACGCGAAAGACCTCGAAGTGCCAGTTCGACCACCGTGCTTTGACATGGGGGTACAGTGGATTTCGTATCGGCGCAAGGACGAATTGCAGGCCATCGCCGCTGAATTCGGC---
droKik1 scf7180000298056:1214-1283 - CAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCGCACGTTGGATTTCGTATCTGCGGAAGCGGGAATTGGAGGCGATTCTAAAGGAGTTTTCT---
droFic1 scf7180000453618:26775-26834 + C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGATTTATTCACGTTCGAAGGCCGAATTACTAGCCTTTGCTGACGAATTCGGATTC
droEle1 scf7180000490490:4427-4483 + C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGATTTATTCACGTTTGAAGGCCGAATTACTAGCCTTTGCTGACGAATTCGGG---
droRho1 scf7180000772643:9490-9556 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGTGTAAGGTGGATATCCTATCGCCGCAAAGAGGAACTACAACTCCTCTTAGCCGAGTTCGGC---
droTak1 scf7180000415801:75436-75502 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGTATAAGGTTGATATCCTATCGCCCCAAGGAGGAACTACAACTCCTCTCAGCCGAGTTCGGG---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GACTATCGACCAGGACCCCAAGCAGCAAGGACGCTTCCACTGGACAACCGTGTTAACCGTGCTTACGCCGCGCTTCCGTGACTAGCCCCAAGGTCTCCGGTATTCAGTGCGTTACCTAAGAAGGG--TCTACCGAAGGGTCAATACGTGATACTACCGTCGGAAACGCGAAAGAC-----------------GCCACCGTGATTCGACATGGGGGTACAGTGGATTTCGTATC----GAAGGACGAATTGCAGGCCATCGCAGCCGAATTCGGC---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...TATCGACCAGGACCCCAAGCAG............................................................................................................................................................................................................................................................2263.672204000006120
...TATCGACCAGGACCCCAAGCAGCAAG........................................................................................................................................................................................................................................................2663.672200000004180
..................................................................................................................................................GTGATACTACCGTCGGAAACGCGA...........................................................................................................24203.356706700000000
..............................................ACCGTGTTAACCGTGCTTACGCCGC..............................................................................................................................................................................................................2532.6780710000000
..............................................ACCGTGTTAACCGTGCTTACGCC................................................................................................................................................................................................................2332.3370700000000
..............................................ACCGTGTTAACCGTGCTTACGCCGCGC............................................................................................................................................................................................................2732.3370700000000
..............................................ACCGTGTTAACCGTGCTTACGCCG...............................................................................................................................................................................................................2431.6750500000000
..............................................ACCGTGTTAACCGTGCTTACGC.................................................................................................................................................................................................................2231.6750500000000
...TATCGACCAGGACCCCAAGCAGCAA.........................................................................................................................................................................................................................................................2561.0060400000020
...TATCGACCAGGACCCCAAGCAGCAAGG.......................................................................................................................................................................................................................................................2761.0060000000330
......CGACCAGGACCCCAAGCAGCAAGGACG....................................................................................................................................................................................................................................................2761.0060000000510
.....TCGACCAGGACCCCAAGCAGCAAGGA......................................................................................................................................................................................................................................................2670.8660100000230
GACTATCGACCAGGACCCCAAGCAG............................................................................................................................................................................................................................................................2560.6740100000120
..............................................ACCGTGTTAACCGTGCTTACGCCGCG.............................................................................................................................................................................................................2630.6720200000000
.................................................................................................................................................CGTGATACTACCGTCGGAAACGC.............................................................................................................23200.601200100000110
......CGACCAGGACCCCAAGCAGCAAGG.......................................................................................................................................................................................................................................................2470.5740000000400
.................................................................................................................................................................................................................TGGGGGTACAGTGGATTTCGTATC----GA......................................2620.5010100000000
................................................................................................CCGGTATTCAGTGCGTTACCTAAGA............................................................................................................................................................2520.5010100000000
..............................................................TTACGCCGCGCTTCCGTGACTAGCC..............................................................................................................................................................................................2520.5010010000000
.....TCGACCAGGACCCCAAGCAGCAAG........................................................................................................................................................................................................................................................2470.4330000000210
......CGACCAGGACCCCAAGCAGCAAGGAC.....................................................................................................................................................................................................................................................2670.4330000000030
..........................................................................TCCGTGACTAGCCCCAAGG........................................................................................................................................................................................1930.3310100000000
...TATCGACCAGGACCCCAAGCAGCA..........................................................................................................................................................................................................................................................2460.3320200000000
................................................CGTGTTAACCGTGCTTACGCCGCGC............................................................................................................................................................................................................2530.3310100000000
................................................CGTGTTAACCGTGCTTACGCCG...............................................................................................................................................................................................................2230.3310100000000
..............................................ACCGTGTTAACCGTGCTTAC...................................................................................................................................................................................................................2030.3310010000000
............................................CAACCGTGTTAACCGTGCTTACGCC................................................................................................................................................................................................................2530.3310100000000
...............................................CCGTGTTAACCGTGCTTACGCCGC..............................................................................................................................................................................................................2430.3310100000000
.........................................................................TTCCGTGACTAGCCCCAAGG........................................................................................................................................................................................2030.3310100000000
.............................................AACCGTGTTAACCGTGCTTACGCC................................................................................................................................................................................................................2430.3310100000000
...TATCGACCAGGACCCCAAGCAGC...........................................................................................................................................................................................................................................................2360.3320100000100
.....................................................................GCGCTTCCGTGACTAGCCCCAAGG........................................................................................................................................................................................2430.3310100000000
..............................................ACCGTGTTAACCGTGCTTACGCCGCGCT...........................................................................................................................................................................................................2830.3310100000000
.........................................................................TTCCGTGACTAGCCCCAAGA........................................................................................................................................................................................2030.3310100000000
...............................................CCGTGTTAACCGTGCTTACGC.................................................................................................................................................................................................................2130.3310100000000
..................................................TGTTAACCGTGCTTACGCCGCGCTT..........................................................................................................................................................................................................2530.3310100000000
......CGACCAGGACCCCAAGCAGCAAG........................................................................................................................................................................................................................................................2370.2920100000010
.....TCGACCAGGACCCCAAGCAGCAAGGAC.....................................................................................................................................................................................................................................................2770.2920000000020
.................................................................................................................................................CGTGATACTACCGTCGGAAACGCG............................................................................................................24200.2550000000050
...TATCGACCAGGACCCCAAGCAGA...........................................................................................................................................................................................................................................................2360.1710000000010
......CGACCAGGACCCCAAGCAGCAAGGACGC...................................................................................................................................................................................................................................................2860.1710000000010
...TATCGACCAGGACCCCAAGCAGCAAGGAC.....................................................................................................................................................................................................................................................2960.1710010000000
...TATCGACCAGGACCCCAAGCAGCAAGGA......................................................................................................................................................................................................................................................2860.1710100000000
...TATCGACCAGGACCCCAAGC..............................................................................................................................................................................................................................................................2060.1710000100000
.ACTATCGACCAGGACCCCA.................................................................................................................................................................................................................................................................1960.1710100000000
..................................................................................................................................................GTGATACTACCGTCGGAAACGCGAAAGA.......................................................................................................28200.1530300000000
.................................................................................................................................................CGTGATACTACCGTCGGAA.................................................................................................................19200.1530300000000
....ATCGACCAGGACCCCAAGCAGCA..........................................................................................................................................................................................................................................................2370.1410100000000
.....TCGACCAGGACCCCAAGCAGCAA.........................................................................................................................................................................................................................................................2370.1410100000000
.....TCGACCAGGACCCCAAGCAG............................................................................................................................................................................................................................................................2070.1410000000100
.....TCGACCAGGACCCCAAGCAGCAAGG.......................................................................................................................................................................................................................................................2570.1410100000000
..........CAGGACCCCAAGCAGCAAGGACG....................................................................................................................................................................................................................................................2380.1310100000000
...........AGGACCCCAAGCAGCAAGGACG....................................................................................................................................................................................................................................................2280.1310000000010
..........CAGGACCCCAAGCAGCAAGGACGC...................................................................................................................................................................................................................................................2480.1310000000010
.......GACCAGGACCCCAAGCAGCAAGGAC.....................................................................................................................................................................................................................................................2590.1110000000010
...........AGGACCCCAAGCAGCAAGGAC.....................................................................................................................................................................................................................................................2190.1110100000000
..........CAGGACCCCAAGCAGCAAGG.......................................................................................................................................................................................................................................................2090.1110100000000
..................................................................................................................................................GTGATACTACCGTCGGAAAC...............................................................................................................20200.1020200000000
...................................................................................................................................................TGATACTACCGTCGGAAACGCGAAAG........................................................................................................26200.0510100000000
...........................................................................................................................................TCAATACGTGATACTACCGTCGGAA.................................................................................................................25200.0510000000010
..................................................................................................................................................GTGATACTACCGTCGGAAACGA.............................................................................................................22200.0510100000000
..........................................................................................................................................................................................................TTCGACATGGGGGTACAGTG.......................................................20200.0510100000000
......................................................................................................................................................TACTACCGTCGGAAACGCGAAAGA.......................................................................................................24200.0510100000000
..................................................................................................................................................GTGATACTACCGTCGGAAACGC.............................................................................................................22200.0510010000000
.................................................................................................................................................CGTGATACTACCGTCGGAAACGCGAAA.........................................................................................................27200.0510000000100
..............................................................................................................................................ATACGTGATACTACCGTCGGAAACG..............................................................................................................25200.0510100000000
droPer2
GACTATCGACCACGACCCCAAGCAGCAAGGACGCTTCCACTGGACAACCGTGTTAACCGTGCATACGCCGCGCTTCCGTGACTAGCCCCAAGGACTCCGGTATTCAGTGCGTTACCTAAGAAAGGATTCTACCGGAGTGTCAATACGTGATACTACCGTCGGGAACGCGAAAGACCTCGAAGTGCCAGTTCGACCACCGTGCTTTGACATGGGGGTACAGTGGATTTCGTATCGGCGCAAGGACGAATTGCAGGCCATCGCCGCTGAATTCGGC---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................TACCGGAGTGTCAATACGTGATAC............................................................................................................................2411.001010000
............CGACCCCAAGCAGCAAGGACG....................................................................................................................................................................................................................................................2111.001010000
...............CCCCAAGCAGCAAGGACGCTTCCACT............................................................................................................................................................................................................................................2611.001010000
......CGACCACGACCCCAAGCAGCAAGGA......................................................................................................................................................................................................................................................2511.001010000
............CGACCCCAAGCAGCAAGGACGCTTCCA..............................................................................................................................................................................................................................................2711.001010000
......................................................................................................................................................................................TGCCAGTTCGACCACCGTGCTTTGACA....................................................................2731.003120000
................................GCTTCCACTGGACAACCGTG.................................................................................................................................................................................................................................2011.001010000
...............................CGCTTCCACTGGACAACCGTGTTAAC............................................................................................................................................................................................................................2611.001010000
.................................................................................................................................................................................................................................................GACGAATTGCAGGCCATCGCCGCT............2411.001010000
....................................................TTAACCGTGCATACGCCGCGCTT..........................................................................................................................................................................................................2390.676060000
.............................................................................................................................................................................................................................GGATTTCGTATCGGCGCAAGGACG................................24200.60122100000
...............................................................................................................TTACCTAAGAAAGGATTCTACCGGA.............................................................................................................................................2520.501010000
.......................................................................................................TCAGTGCGTTACCTAAGAAAGGATT.....................................................................................................................................................2520.501010000
....................................................................................................................TAAGAAAGGATTCTACCGGAG............................................................................................................................................2120.501010000
................................................................................................................TACCTAAGAAAGGATTCTACCGGAG............................................................................................................................................2520.501010000
...................................................................................................................................................TGATACTACCGTCGGGAACGCGA...........................................................................................................2350.402020000
.............................................................................................................................................................................................................................GGATTTCGTATCGGCGCAAGGAC.................................23200.408070001
.................................................................................................................................................CGTGATACTACCGTCGGGAACGC.............................................................................................................2350.402020000
.............................................................................................................................................................................................................................GGATTTCGTATCGGCGCAAGGACGA...............................25200.408170000
........................................................................................................................................................................................CCAGTTCGACCACCGTGCTTTGACA....................................................................2530.331100000
......................................................................................................................................................................................TGCCAGTTCGACCACCGTGCTTTG.......................................................................2430.331010000
.......................................................................................................................................................................................GCCAGTTCGACCACCGTGCTTTGACA....................................................................2630.331010000
....................................................TTAACCGTGCATACGCCGCGCTTCCG.......................................................................................................................................................................................................2690.333030000
....................................................TTAACCGTGCATACGCCGCGCTTCC........................................................................................................................................................................................................2590.333030000
......................................................................................................................................................................................TGCCAGTTCGACCACCGTGCTTTGA......................................................................2530.331010000
....................................................TTAACCGTGCATACGCCGCGCT...........................................................................................................................................................................................................2290.333030000
..............................................................................TGACTAGCCCCAAGGACTCC...................................................................................................................................................................................20100.303300000
.................................................................................................................................................CGTGATACTACCGTCGGGA.................................................................................................................1970.292101000
.............................................................................................................................................................................................................................GGATTTCGTATCGGCGCAAGGACGAA..............................26200.255050000
....................................................TTAACCGTGCATACGCCGCGCTTC.........................................................................................................................................................................................................2490.222020000
..................................................................................................................................................GTGATACTACCGTCGGGAAC...............................................................................................................2050.201010000
..................................................................................................................................................GTGATACTACCGTCGGGAACGC.............................................................................................................2250.201010000
...................................................................................................................................................TGATACTACCGTCGGGAACGCGAAAGA.......................................................................................................2750.201010000
.................................................................................................................................................CGTGATACTACCGTCGGGAACG..............................................................................................................2250.201010000
....................................................................................................................................................GATACTACCGTCGGGAACGCG............................................................................................................2150.201010000
..................................................................................................................................................GTGATACTACCGTCGGGAACGCG............................................................................................................2350.201010000
..................................................................................................................................................GTGATACTACCGTCGGGAACGCGA...........................................................................................................2450.201010000
..................................................................................................................................................GTGATACTACCGTCGGGAACGCGAAAG........................................................................................................2750.201010000
.............................................................................................................................................................................................................................GGATTTCGTATCGGCGCAAGGACGAAT.............................27200.153000003
...........................................................................CCGTGACTAGCCCCAAGGACTCCG..................................................................................................................................................................................2480.131010000
..............................................................................TGACTAGCCCCAAGGACTCCGGT................................................................................................................................................................................2380.131010000
............................................................................CGTGACTAGCCCCAAGGACTCCGT.................................................................................................................................................................................2480.131010000
.........................................................CGTGCATACGCCGCGCTTCCGTGA....................................................................................................................................................................................................2490.111010000
.....................................................TAACCGTGCATACGCCGCGCTTCCG.......................................................................................................................................................................................................2590.111010000
....................................................TTAACCGTGCATACGCCGCGCTTCCGT......................................................................................................................................................................................................2790.111010000
...............................................CCGTGTTAACCGTGCATACGCCGCGC............................................................................................................................................................................................................26110.091010000
..................................................................GCCGCGCTTCCGTGACTA.................................................................................................................................................................................................18110.091010000
....................................................TTAACCGTGCATACGCCGCGC............................................................................................................................................................................................................21120.081010000
..................................................................................................................................................................................................................................................ACGAATTGCAGGCCATCGCCGC.............22130.081010000
............................................................................CGTGACTAGCCCCAAGGACTC....................................................................................................................................................................................21140.071010000
.............................................................................GTGACTAGCCCCAAGGACT.....................................................................................................................................................................................19140.071010000
................................................................................................CCGGTATTCAGTGCGTTACCTAAGAA...........................................................................................................................................................26150.071010000
..........................................................................TCCGTGACTAGCCCCAAGGA.......................................................................................................................................................................................20160.061010000
.............................................................................................................................................................................ACCTCGAAGTGCCAGTTCGACCACCG..............................................................................26180.061010000
........................................................................................................................................................................GAAAGACCTCGAAGTGCC...........................................................................................18180.061100000
.....................................CACTGGACAACCGTGTTAACCGTGCA......................................................................................................................................................................................................................26190.051010000
..............................................................................................................................................................................................................................GATTTCGTATCGGCGCAAGG...................................20200.051010000
....................................................................................................................................................................................AGTGCCAGTTCGACCACCGTGCTT.........................................................................24200.051010000
...........................................................................................................................................................................................................................................CGCAAGGACGAATTGCAGGCCAT...................23200.051010000
................................................................................................................................................................................TCGAAGTGCCAGTTCGACCACCGTGC...........................................................................26200.051010000
......................................................................................................................................................................................TGCCAGTTCGACCACCGTGC...........................................................................20200.051010000
...........................................................................................................................................................................................................................................CGCAAGGACGAATTGCAGG.......................19200.051010000
......................................................................................................................................................................................................................GTACAGTGGATTTCGTATCGGCGCAA.....................................26200.051010000
............................................................................................................................................................................................................................TGGATTTCGTATCGGCGCAAGGACGAA..............................27200.051010000
.....................................................................................................................................................................................................................................TATCGGCGCAAGGACGAATTGCAG........................24200.051100000
.................................................................................................................................................................................CGAAGTGCCAGTTCGACCACCGTGC...........................................................................25200.051001000
................................................................................................................................................................................TCGAAGTGCCAGTTCGACCACCGTG............................................................................25200.051010000
......................................................................................................TTCAGTGCGTTACCTAAGAA...........................................................................................................................................................20200.051100000
........................................................................................................................................................................................................................ACAGTGGATTTCGTATCGGC.........................................20200.051010000
.............................................................................................................................................................................................................................GGATTTCGTATCGGCGCA......................................18200.051100000
..............................................................................................................................................................................................................................GATTTCGTATCGGCGCAAGGACG................................23200.051010000
.............................................................................................................................................................................................................................GGATTTCGTATCGGCGCAAG....................................20200.051010000
droKik1
CAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCGCACGTTGGATTTCGTATCTGCGGAAGCGGGAATTGGAGGCGATTCTAAAGGAGTTTTCT---SizeHit CountTotal NormTotal
No Reads
droFic1
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGATTTATTCACGTTCGAAGGCCGAATTACTAGCCTTTGCTGACGAATTCGGATTCSizeHit CountTotal NormTotal
No Reads
droEle1
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGATTTATTCACGTTTGAAGGCCGAATTACTAGCCTTTGCTGACGAATTCGGG---SizeHit CountTotal NormTotal
No Reads
droRho1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGTGTAAGGTGGATATCCTATCGCCGCAAAGAGGAACTACAACTCCTCTTAGCCGAGTTCGGC---SizeHit CountTotal NormTotal
No Reads
droTak1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGTATAAGGTTGATATCCTATCGCCCCAAGGAGGAACTACAACTCCTCTCAGCCGAGTTCGGG---SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 02:53 AM