ID:

dps_2045

 Coordinate:

Unknown_group_498:3217-3400 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.3 -49.1 -48.9

Flybase annnotation

exon [dpse_GLEANR_7239:2]; exon [dpse_GLEANR_7239:1]; CDS [Dpse\GA27993-cds]; CDS [Dpse\GA27993-cds]; intron [Dpse\GA27993-in]

No Repeatable elements found

mature
  1. Unknown_group_152:7246-7268 +
  2. Unknown_group_152:7393-7415 +
  3. Unknown_group_543:7283-7305 +
  4. Unknown_group_358:5151-5173 +
  5. Unknown_group_35:30688-30710 +
  6. Unknown_group_20:38742-38764 +
  7. Unknown_group_20:39333-39355 +
  8. Unknown_singleton_3810:1206-1228 +
  9. Unknown_group_188:2899-2921 +
  10. XR_group8:1355899-1355921 +
  11. Unknown_group_22:19076-19098 +
  12. Unknown_singleton_2019:837-859 +
  13. Unknown_group_203:5721-5743 +
  14. Unknown_group_336:1310-1332 +
  15. Unknown_group_481:391-413 +
  16. Unknown_group_364:434-456 +
  17. Unknown_group_364:6759-6781 +
  18. Unknown_group_416:10890-10912 +
  19. Unknown_singleton_635:1590-1612 +
  20. Unknown_singleton_211:100-122 +
  21. dps_2045  Unknown_group_498:3319-3341 +
  22. 3:5517469-5517491 +
  23. Unknown_singleton_2107:165-187 +
  24. Unknown_group_45:21805-21827 +
star

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAACGTGCCTGTCTCCCTTAGAAAGCTGCAAAGCGATCTAGAAAAGCAGGTCAAAAAACAAACCGAAAGTAGGTAGAGGAGTACCAGAGGAGTGGGAATATTAACAGCCCAATGTCTAGCTGCGGCGCTTGCAACAAAGCTAGGCATCTCCAACAGAGACAGTTGTAGGAAATGTGATGAACCTGGGCGGAAACCCTGGAACATCTAATCTGAAACTGTCATGATCTTTTAAGGGCAAGGAGGAAATACCTGGGCGCCCGGTGCTGGCATCACTGGAAGATGC
**************************************************...............(((((..((((......))))...((((((((...........))))((((((((((...((....)).....))))))))))))))..((..(((((((...(((.....((((..((.(((......))).))..))))...)))..))))))).))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 GSM343916
embryo
 M059
embryo
 GSM444067
head
 M022
male body		 M062
head
........................................................................................................................................................AACAGAGACAGTTGTAGGAAATG............................................................................................................. 23 0 20 12.00 240 226 3 9 0 0 1 1 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAATGT............................................................................................................ 24 0 20 5.90 118 96 0 17 0 2 3 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAATGTGA.......................................................................................................... 26 0 20 2.45 49 47 0 2 0 0 0 0 0 0
...........................................................................................................................................................AGAGACAGTTGTAGGAAATGTGA.......................................................................................................... 23 0 20 2.20 44 0 44 0 0 0 0 0 0 0
.........................................................................................................................................................ACAGAGACAGTTGTAGGAAATG............................................................................................................. 22 0 20 1.90 38 37 0 1 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAATGTG........................................................................................................... 25 0 20 1.85 37 32 0 3 0 2 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGG................................................................................................. 24 0 20 1.25 25 0 25 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTCGTAGGAAAT.............................................................................................................. 22 1 20 0.65 13 11 0 0 0 1 1 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAAT.............................................................................................................. 22 0 20 0.65 13 0 0 6 0 4 2 0 1 0
.........................................................................................................................................................ACAGAGACAGTTGTAGGAAATGTG........................................................................................................... 24 0 20 0.60 12 10 0 2 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAA................................................................................................................ 20 0 20 0.55 11 8 0 2 0 1 0 0 0 0
....................................................................................................................................................CTCCAACCGAGACAGTTGTAGGAAAT.............................................................................................................. 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGGG................................................................................................ 25 0 20 0.45 9 0 8 0 1 0 0 0 0 0
............................................................................................................................................................GAGACAGTTGTAGGAAATGTGATG........................................................................................................ 24 0 20 0.40 8 0 3 0 5 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGG.................................................................................................................. 18 0 20 0.35 7 7 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GGAAATACCTGGGCGCCCCGT..................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGAGACAGTTGTAGGAAATGTGATGA....................................................................................................... 26 0 20 0.30 6 0 4 0 2 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAAA.............................................................................................................. 22 1 20 0.30 6 4 0 2 0 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACCT................................................................................................... 22 0 20 0.25 5 0 5 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AAGGAGGAAATACCTGGGCGCCC........................ 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTCGTAGGAAATG............................................................................................................. 23 1 20 0.20 4 0 0 1 0 3 0 0 0 0
...........................................................................................................................................................AGAGACAGTTGTAGGAAATGTG........................................................................................................... 22 0 20 0.20 4 0 3 0 1 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACTTGG................................................................................................. 24 1 20 0.20 4 0 4 0 0 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAAC..................................................................................................... 20 0 20 0.20 4 0 2 0 2 0 0 0 0 0
.........................................................................................................................................................ACAGAGACAGTTGTAGGAAATGTGA.......................................................................................................... 25 0 20 0.20 4 3 0 1 0 0 0 0 0 0
.........................................................................................................................................................ACAGAGACAGTTGTAGGAAA............................................................................................................... 20 0 20 0.15 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................TAGGAAATGTGATGAACCTGGG................................................................................................ 22 0 20 0.15 3 1 0 0 2 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAA............................................................................................................... 21 0 20 0.15 3 0 0 3 0 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGGA................................................................................................ 25 1 20 0.15 3 0 3 0 0 0 0 0 0 0
..............................................................................................................................................................GACAGTTGTAGGAAATGTGATGA....................................................................................................... 23 0 20 0.15 3 0 3 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................CAAGGAGGAAATAACTGGATGCC......................... 23 3 9 0.11 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCTTAAGGGCAAGGAGGAAATACCTGGGC............................ 29 1 9 0.11 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACTTGGG................................................................................................ 25 1 20 0.10 2 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................AGACAGTTGTAGGAAATGTGATGA....................................................................................................... 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0
.......................................................................................................................................................CAACAGAGACAGTTGTAGGAAATG............................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAATTGTAGGAAA............................................................................................................... 21 1 20 0.10 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................CAGAGACAGTTGTAGGAAAT.............................................................................................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAATGAAA.......................................................................................................... 26 2 20 0.10 2 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACTTG.................................................................................................. 23 1 20 0.10 2 0 2 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAATGA............................................................................................................ 24 1 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................CAGAGACAGTTGTAGGAAATG............................................................................................................. 21 0 20 0.10 2 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................ACAGAGACAGTTGTAGGAAAT.............................................................................................................. 21 0 20 0.10 2 0 0 1 0 0 0 1 0 0
.........................................................................................................................................................ACAGAGACAGTTGTAGGAAATGT............................................................................................................ 23 0 20 0.10 2 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................AGAGACAGTTGTAGGAAATGT............................................................................................................ 21 0 20 0.10 2 0 1 0 1 0 0 0 0 0
........................................................................................................................................................AACAAAGACAGTTGTAGGAAATG............................................................................................................. 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................GAGACAGTTGTAGGAAATGTGAT......................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AAGGAGGAAATACCTGGGA............................ 19 1 10 0.10 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TAAGGAGGAAATACCTGGGCGC.......................... 22 1 11 0.09 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTCTAAGGGCAACGAGGCA...................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCTAAGGGCAACGAGGCAA..................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTCGTAAGGAAT.............................................................................................................. 22 3 20 0.05 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................TAGGAAATGTGATGAACCTG.................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACAGAGACAGTCGTAGGAAAA.............................................................................................................. 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CCAACAGAGACAGTTGTAGGAAATG............................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TAGGAAATGTGATGAACCTGG................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACCTG.................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................CAGAGACAGTTGTAGGAAATGT............................................................................................................ 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................AGAGACAGTTGTAGGAAATC............................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................ACGGAGACAGTTGTAGGAAAT.............................................................................................................. 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTCTAGGAAATG............................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................GTTGTAGGAAATGTGATGAACCTG.................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................ATCAGAGACAGTCGTAGGAAATG............................................................................................................. 23 2 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................TGTAGGAAATGTGATGAACCT................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGCTGGCATCACTGGAAGATGC 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................TTGTAGGAAATGTGATGAACC.................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................ACAGTTGTAGGAAATGTGATGA....................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATCCCGGGCGGAAACCCC...................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................TGTAGGAAATGTGATGAACC.................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................CGGAGACAGTTGTGGGAAATG............................................................................................................. 21 2 20 0.05 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTTGGAAATGT............................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGACAGTTGTAGGAAATGTG........................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................ACAGAGACAGTTGTAGGAAGTG............................................................................................................. 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................GATCTGGAAAAGCAGGGCAT..................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTTGTAGGAAATGTGAT......................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAGTGACATGATCTTTTG.................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AACAGAGACAGTCGTAGG.................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AACAGGGACAGTTGTAGGAAATG............................................................................................................. 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTTTGCACGGACAGAGGGAATCTTTCGACGTTTCGCTAGATCTTTTCGTCCAGTTTTTTGTTTGGCTTTCATCCATCTCCTCATGGTCTCCTCACCCTTATAATTGTCGGGTTACAGATCGACGCCGCGAACGTTGTTTCGATCCGTAGAGGTTGTCTCTGTCAACATCCTTTACACTACTTGGACCCGCCTTTGGGACCTTGTAGATTAGACTTTGACAGTACTAGAAAATTCCCGTTCCTCCTTTATGGACCCGCGGGCCACGACCGTAGTGACCTTCTACG
**************************************************...............(((((..((((......))))...((((((((...........))))((((((((((...((....)).....))))))))))))))..((..(((((((...(((.....((((..((.(((......))).))..))))...)))..))))))).))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M059
embryo
 GSM343916
embryo
 SRR902010
ovaries
 M022
male body		 M062
head
 SRR902011
testis
 GSM444067
head
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCT... 23 0 7 290.43 2033 1981 2 34 16 0 0 0 0 0
.................................................................................................................................................................................................TGGGGCCTTGGAGATTAG......................................................................... 18 2 2 161.50 323 240 79 1 3 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACCTTCT... 22 0 7 78.43 549 522 3 18 6 0 0 0 0 0
................................................................................................................................................................................................CTGGGGCCTTGGAGATTAG......................................................................... 19 3 7 52.14 365 188 173 2 1 0 1 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTCT... 21 0 7 22.43 157 128 0 27 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTC.... 22 0 7 15.57 109 108 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................CCCGCCTTTGGGAGGTTGT................................................................................ 19 2 1 12.00 12 11 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TTGGGGCCTTGGAGATTA.......................................................................... 18 2 1 9.00 9 5 4 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCTA.. 24 0 7 7.14 50 49 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACCTTC.... 21 0 7 5.14 36 36 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCCGCCTTTGGGAGGTTGTG............................................................................... 20 3 6 4.83 29 28 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGCCTTTGGGAGGTTGT................................................................................ 18 2 4 3.25 13 12 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................TGGGGCCTTGGAGATTAGA........................................................................ 19 2 1 3.00 3 2 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CCGGCCACGACCGTAGTGACCTTCT... 25 1 2 2.50 5 2 0 2 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGCCACGACCGTAGTGACCTTCT... 23 1 8 2.50 20 20 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACCTTCTA.. 23 0 7 2.43 17 14 0 0 1 2 0 0 0 0
.........................................................................................................................................................................................CCCGCCTTTGGGAGGTTG................................................................................. 18 2 5 2.20 11 11 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGGGCCTTGTAGATTAG......................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................CGATCCGTAGAGGTTGTCTCTGT.......................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GTTGGGGCCTTGGAGATTA.......................................................................... 19 3 10 1.70 17 10 6 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCTAC. 25 0 6 1.67 10 10 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AGCCACGACCGTAGTGACCTTCT... 23 1 8 1.38 11 11 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AACGACCGTAGTGACCTTCT... 20 1 20 1.25 25 25 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGGCCACGACCGTAGTGACCTTCT... 24 1 8 1.13 9 8 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CGGGCCACGACCGTAGTGACCTTCT... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCCGCCTTTGGGAGGTTGTGGAT............................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TTCGATCCGTAGAGGTTGTCTCTGT.......................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTT..... 21 0 8 1.00 8 8 0 0 0 0 0 0 0 0
.........GACAGAGGGAATCTTTCGACTT............................................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................GTTTCGATCCGTAGAGGTTGTCTCTG........................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGCCTTTGGGAGGTTGTGGAT............................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTGGGGCCTTGGAGATTAG......................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGCCTTTGGGAGGTTGTGGA............................................................................. 21 3 2 1.00 2 0 0 1 0 0 0 1 0 0
................................................................................................................................................................................................CTGGGGCCTTGTAGATTA.......................................................................... 18 2 2 1.00 2 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................TCCCGCCTTTGGGAGGTTGT................................................................................ 20 3 6 0.83 5 5 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCTG.. 24 1 8 0.75 6 6 0 0 0 0 0 0 0 0
........................................................................................................................................................TTGTCTCTGTCAACATCCTTTACACT.......................................................................................................... 26 0 20 0.75 15 0 0 0 0 15 0 0 0 0
...................................................................................................................................................................................................................................................................ACCACGACCGTAGTGACCTTCT... 22 1 7 0.71 5 4 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACCTTGT... 22 1 8 0.63 5 0 0 5 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCT...... 20 0 8 0.63 5 5 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCGCGACCGTAGTGACCTTCT... 23 1 7 0.57 4 3 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTC.... 20 0 7 0.57 4 4 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCTC.. 24 1 7 0.57 4 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GGGCCACGACCGTAGTGACCTTCT... 24 0 4 0.50 2 2 0 0 0 0 0 0 0 0
.TTTGCACGGACAGAGGGAATC...................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACCGGCCACGACCGTAGTGACCTTCT... 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGAC........ 18 0 8 0.50 4 4 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCCGCCTTTGGGACGTTGTG............................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGGGCCCTTGGAGATTAG......................................................................... 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTCTCTGTCAACATCCTTTACACT.......................................................................................................... 25 0 20 0.50 10 0 0 0 0 10 0 0 0 0
.......AGGACAGAGGGAATCTTTCGACGT............................................................................................................................................................................................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......AAGGACAGAGGGAATCTTTCGACGT............................................................................................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CGGGCCACGACCTTTGTG.......... 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCCGCCTTTGGGAGGTTGTGG.............................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.TTTGCACGGACAGAGGGAAT....................................................................................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTCTA.. 22 0 7 0.43 3 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GCCTTTGGGAGGTTGTGGAT............................................................................ 20 3 5 0.40 2 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGGCCACGACCGTAGTGACCTTCTA.. 25 1 8 0.38 3 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................CGCCACGACCGTAGTGACCTTCT... 23 1 8 0.38 3 1 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTGT... 21 1 8 0.38 3 0 0 3 0 0 0 0 0 0
.......................................................................................................................................................GTTGTCTCTGTCAACATCCTTTACACT.......................................................................................................... 27 0 20 0.35 7 0 0 0 0 6 0 0 1 0
......................................................................................................................................................GGTTGTCTCTGTCAACATCCTTT............................................................................................................... 23 0 20 0.35 7 0 0 0 0 0 0 0 7 0
......................TTTCGACGTTTCGCTAGATCTT................................................................................................................................................................................................................................................ 22 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................CGCGAACGTTGTTTTGATGCGG......................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0
................................................................................TCATGGTCTCTGCACCTTTAT....................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGGGTCCTTGGAGATTAG......................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................CTTTCGACGTTTCGCTAGATCTTTT.............................................................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................CTTTCGACGTTTCGCTAGATCTTT............................................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TTGTTGCGATCCTTAGAGGG................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGGGCCTTGGAGATTAGA........................................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCAACGACCGTAGTGACCTTCT... 23 1 7 0.29 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTCGTGACCTTCT... 22 1 7 0.29 2 0 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACTACCGTAGTGACCTTCT... 23 1 7 0.29 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCC... 23 1 7 0.29 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGCCCTTCT... 23 1 7 0.29 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACCT...... 19 0 8 0.25 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AGCCACGACCGTAGTGACCTTC.... 22 1 8 0.25 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GGGCCACGACCGTAGTGACCTTCTACC 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0
....................CCTTTCGACGTTTCGCTAGATCTT................................................................................................................................................................................................................................................ 24 1 4 0.25 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AAGCCACGACCGTAGTGACCTTCT... 24 2 9 0.22 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCTACG 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACCTTCTACG 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCTGGGGCCTTGGAGATT........................................................................... 18 3 20 0.20 4 3 1 0 0 0 0 0 0 0
.....................CTTTCGACGTTTCGCTAGATCTCTT.............................................................................................................................................................................................................................................. 25 1 12 0.17 2 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTCTAC. 23 0 6 0.17 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CGGGCCACGACCTTTGTGG......... 19 3 18 0.17 3 3 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAGACTTTGTCAGTACTATC........................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GCTGGGACCTTGGAGATTA.......................................................................... 19 3 13 0.15 2 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................GCCTTTGGGAGGTTGTGGA............................................................................. 19 3 20 0.15 3 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................GTCTCTGTCAACATCCTTT............................................................................................................... 19 0 20 0.15 3 0 0 0 0 3 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCCTCT... 21 1 7 0.14 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACAGGCTA.. 24 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GTTGGGGCCTTGGAGATTAG......................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................ACCACGACCGTAGTGACCTTC.... 21 1 7 0.14 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGGCCACGACCGTAGTGACCTTCTAC. 26 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGGCCTTCT... 23 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGAGCTTC.... 22 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGCCTTTGGGAGGTTGTGG.............................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CCAGGCCACGACCGTAGTGACCTTCT... 26 2 7 0.14 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCCTCT... 23 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGCAGTGACCTTCT... 23 1 7 0.14 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTCTC.. 22 1 7 0.14 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCAAGACCGTAGTGACCTTCT... 23 1 7 0.14 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTCGA.. 22 1 7 0.14 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCATCT... 21 1 7 0.14 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCATAGTGACCTTC.... 22 1 7 0.14 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCAAGACCGTAGTGACCTTCT... 22 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTCTT.. 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCATCT... 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTTGTGACCTTCT... 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................AACCACGACCGTAGTGACCTTCT... 23 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCTTCTG.. 22 1 8 0.13 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AGGCCACGACCGTAGTGACCTTC.... 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCACGACCGTAGTGACCGTCT... 21 1 8 0.13 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTTG.... 22 1 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGCCACGACCGTAGTGACCTTC.... 22 1 8 0.13 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACCTTCTG.. 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCCTAGTGACCTTCT... 22 1 8 0.13 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACCGTAGTGACC....... 18 0 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACCTCCT... 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGCCACGACCGTAGTGACCTTCTA.. 24 1 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGGCCGTAGTGACCTTCT... 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTTACCTTCT... 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCTACGACCGTAGTGACCTTCT... 23 1 8 0.13 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGTGACC....... 19 0 8 0.13 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCCCGACCGTAGTGACTTTCT... 22 2 9 0.11 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................ATGCCACGACCGTAGTGACCTTCT... 24 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AAGCCACGACCGTAGTGACCTTC.... 23 2 9 0.11 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCCACGACCGTAGTGACCTTCT... 22 1 9 0.11 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTGTCAACATCCTTTACACTACTT...................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGGGTTTGGGACGTTGTAG.............................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................ATGTCTCTGTCAACATCCTTTACACT.......................................................................................................... 26 1 20 0.10 2 0 0 0 0 2 0 0 0 0
......................................................................................................................................................................................................................................................................ACGACCGTAGTGACCTTCTA.. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGAGACCTTCT... 23 1 10 0.10 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CGACCGTAGTGACCTTCT... 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GGCCACGACCGTAGGGACCTTCT... 23 1 10 0.10 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AGCCAGGACCGTAGTGACCTTCT... 23 2 10 0.10 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GCCACGACAGTAGAGACCTTCT... 22 2 11 0.09 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................CGTGGAGGTTGTATGTGTCA........................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................GCCACCAACGTAGTGACCTTCT... 22 2 12 0.08 1 0 0 0 0 0 0 0 0 1
.............................................................TTGGCTTTCATCCACCTCCTCATCGGC.................................................................................................................................................................................................... 27 3 17 0.06 1 1 0 0 0 0 0 0 0 0
.........................CGACGTTTCGCTGGATCTTTTCG............................................................................................................................................................................................................................................ 23 1 19 0.05 1 1 0 0 0 0 0 0 0 0
.........................CGACGTTTCGCTAGATCTTTTCGT........................................................................................................................................................................................................................................... 24 0 19 0.05 1 1 0 0 0 0 0 0 0 0
.........................CGACGTTTCGCTGGATCTTTTCGT........................................................................................................................................................................................................................................... 24 1 19 0.05 1 1 0 0 0 0 0 0 0 0
......................TTTCGACGTTCCGCTAGATT.................................................................................................................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................GTTGTCTCTGTCAACATCCTT................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCTGTCAACATCCTTTACACT.......................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................GTCTCTGTCAACATCCTTTAC............................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GGTTGTCTCTGTCAACATCC.................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...TGCACGGACAGAGGGAATCTT.................................................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................GTCAACATCCTTTACACTACTTGGA................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................AAGACCGTAGTGACCTTCT... 19 1 20 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CACGACCGTAGTGACCTTCTA.. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................TTCGATCCGTAGGGGTTGTCTCTGTC......................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GGTTGTCTCTGCCAACATCCTTT............................................................................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................TGTCTCTGTCAACATCCTTT............................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................GGTTGTCTCTGTCAACATCCTTC............................................................................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................GGGCCCTTGTAGATTAGATGTTG................................................................... 23 3 20 0.05 1 0 0 0 1 0 0 0 0 0
..ATGTACGGACAGAGGGAAT....................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TGGGGCCCTGGAGATTAG......................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TTCGATCCGTAGGGGTTGTCTCTGT.......................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0
...AGCACGGACAGAGGGAAT....................................................................................................................................................................................................................................................................... 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TTGTCTCTGTCAACATCCTTTA.............................................................................................................. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................AGGGGCCTTGGAGATTAG......................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTCTCTGTCAACAACCTTTACACTACT....................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CACGACCGTAGTGACCTTCTAC. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTGGGTCCTTGTAGCTTG.......................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CACGACCGTAGTGACCTTATA.. 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_498:3167-3450 + dps_2045 AAAACGTGCCTGTCTCCCTTAGAAAGCT--GCAAAGCGATCTAGAAAAGCAGGTCAAAAAACAAACC---GAAAGTAGGTAGAG-GAGTACCAGAGG--------------------------AGTGGGAATATTAACAGCCCAATGTCTAGCTGCGGCGCTTGCAACAAAGCTAGGCATCTCCAACAGAGACAGTTGTAGGAAATGTGATGAACCTGGG----CGGAAACCCTGGAACATCTAATCTGAAACTGTCATGATCTTTTAAGGGCAAGGAGGAAATACCTGGGCGC-CCGGTGCTGGCATCACTGGAAGATGC
droPer2 scaffold_66:282610-282893 + AAAACGTGCCTGTCTCCCTTAGAAAGCT--GCAAAGCGATCTAGAAAAGCAGGCCAAAAAACAAACC---GAAAGTAGGTAGAG-GAGTACCAGAGG--------------------------AGTGGGAATATTAACAGCCCAATGTCTAGCTGCGGCGCTTGCAACAAAGCTAGGCATCTCCAACAGAGACAGTTGTAGGAAATGTGATGAACCTGGG----CGGAAACCCTGGAACATCTAATCTGAAACTGTCATGATCTTTTAAGGGCAAGGAGGAAATACCTGGGCGC-CCGGTGCTGGCATCACTGGAAGATGC
droVir3 scaffold_12875:6550577-6550640 + AGTAAGC--------------------A--GCAAAGCGAATACAATAAGCAACGCGAAAATCAAACA---AGAAGCAAAGTGAG-AAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:2497546-2497572 + TAGGAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTATCAACCTGGG----CGGAA--------------------------------------------------------------------------------------------
droGri2 scaffold_14616:3416-3422 + GAACCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:17463406-17463446 - GTGACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGGA----TGGGAAACCCAAAATATCTGATATCAA----------------------------------------------------------------------
droBip1 scf7180000395176:51681-51735 + AAAAAA-------------------------------------------------------AAAACC---GAAAATAGAGAAGG-AAATTCAAGCAG--------------------------ATTGGAGTTATCCAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000300536:17103-17403 + AAAACGTCCCTATCTCCCTAAGAACGAT--CCAAAGCGAGCTAGAGAGACGGGCTGACGCAAGCGCA---AAAAGCAGGTAGAG-GAGTAAT-------TCCGCGTAAGGACTG-------TAGAATGCAATTCTAACAGATCACTGCCTGTCTGCTGCACATGCATTCAAGCTGGGTATTACCGACAACGCCAAATGCCGGAAATGTGATGAATCCGAGGCAAACGAAACCTTGGAGCATCTGATTTGCAAATGTCCGGCCCTAACGAGGGCAAGAATGAGATACCTAGGCTCTCCAGTTCTGGCATAGCTAGAAGATGC
droFic1 scf7180000453937:76067-76231 + AATTA---------------------------------------------------------------------------------------------------------------------------GGATTTTAACAGATCATTGACTGGCTGTGTTTCACGCAACCAAATTACGCTCCACCAACATTAGCAATTGCAGGAAATGTGGTGAGTCCTGGGTAATCGAAACACTGAAATCCCTCGTTCGTAAATACACCGCC---------------------------------ATGATACTGGCATTACTTGAAGATGC
droEle1 scf7180000490502:10362-10613 + AGGACGTGCCCATCTGCCTGAGAACGCA--CCAGAGCTA-------------------------ACC---AAATGCAGGTGGAG-GAGAAT-------------------------------TAGTGGGAATTCTCACAGGCCACTGTCTAGCCTCGACACACGCAGTCAAACTAAGCATCATCAGCAATGGCAGTTGCAAG-------TTGATGTTGGGGCGAGCGAGTGCTTGGAACATCTTATCTGTAACTGCCCAGCTCTCTCAAGGGCAAGGAGAAGATACCTGGGCTACCCGTTACTGGCATCTCTAGAAGAAAC
droRho1 scf7180000766167:629-678 + GAAAGC---------------------C--CCTAAGCGAACTCAAAAAAAAAATCAGAAAACAATTT---AAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302246:11552-11819 + AGAAAATGCCTATTTCCCGCCGAACGCT--ACAAAGAGCAGTGAAGAAACAGGCAAACTTAGGCAC------------------TATGTACT-GAAT--------------------------CTTCAGATTCCTCACAGGCCACTGGCTGGCCACATCACAATCAACCACACTCGGAGTACTTAACAGCCGCA-----CAGAAATGTGATAAAACGG-GGCTATTGAAACCATGAAATATCTTATATGCAGTTGCCCGGCTTTCTCACGGGCAAGAAGAAGATACCTCGGTGCCCAAGTAGTGGCATCACTAGGAGACGC
droTak1 scf7180000412586:10707-10999 + AAGACCTGCCGAATCT--CAAGAACTATGTGCAAAGAG-----------CGCAACGAAAAACTCAGCCAG--------------TTTGTACT-GCGTCTACCACGGAAAGACTGCAGACTGTTAGTGGGAATCCTTCCAGGCCACTGTCTGGCCACATCACACGCAACCACACTCGGAATATTCAACAGCCGCGCCTGCAGGAAATGTGATGAATCGGGGGCTATGGAAACCCTGGAACATCTTATCTGCAACTGACCGGCTCTCTCTAGAGCAAAAAGAAGATACCTCGGTGCCCCAGTACTGGCATTACTAGGAGACGC
droEug1 scf7180000409629:14567-14618 - GCGAAGA------------------------------GCTTTCGAAGAATAGAGCAGAAAACAAACC---GAAAACACGAAAGG-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_645:56673-56934 + AAAACGTTCCTGTCTCCCTTAGAACGCT--CCAAAG---ACTGGAAAGACAGGCCGACACACGACT-----------------------G-------------------------------TTAGTGGGAATTCTTACAGGTCACTACCTAGCTGCGGCACACGCAGTCAAACTGGGCATTACCGACGACGCGAAATGCCGGAAATGTGATGAATTCGAGGCAATCGAAACCTTAGAGCATCTCATGTGCAAGTGTCCGGCCCTAACAAGGGCAAGAATAAACTACCTAGGCGCCCCGGTTCTGGTATCGCTAGAAGATGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAAACGTGCCTGTCTCCCTTAGAAAGCT--GCAAAGCGATCTAGAAAAGCAGGTCAAAAAACAAACC---GAAAGTAGGTAGAG-GAGTACCAGAGG--------------------------AGTGGGAATATTAACAGCCCAATGTCTAGCTGCGGCGCTTGCAACAAAGCTAGGCATCTCCAACAGAGACAGTTGTAGGAAATGTGATGAACCTGGG----CGGAAACCCTGGAACATCTAATCTGAAACTGTCATGATCTTTTAAGGGCAAGGAGGAAATACCTGGGCGC-CCGGTGCTGGCATCACTGGAAGATGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAATG..................................................................................................................232012.00240022610019300
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAATGT.................................................................................................................24205.90118096302017000
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAATGTGA...............................................................................................................26202.454904700002000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTGA...............................................................................................................23202.204400000004400
.........................................................................................................................................................................................ACAGAGACAGTTGTAGGAAATG..................................................................................................................22201.903803700001000
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAATGTG................................................................................................................25201.853703200203000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGG......................................................................................................24201.252500000002500
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAAT...................................................................................................................22200.65131020406000
.........................................................................................................................................................................................ACAGAGACAGTTGTAGGAAATGTG................................................................................................................24200.601201000002000
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAA.....................................................................................................................20200.55110800102000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGGG----.................................................................................................25200.4590000000810
............................................................................................................................................................................................GAGACAGTTGTAGGAAATGTGATG.............................................................................................................24200.4080000000350
........................................................................................................................................................................................AACAGAGACAGTTGTAGG.......................................................................................................................18200.3570700000000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTGATGA............................................................................................................26200.3060000000420
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAAA...................................................................................................................22200.3060400002000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCT........................................................................................................22200.2550000000500
.................................................................................................................................................................................................................................................................................AAGGAGGAAATACCTGGGCGC-CC........................2350.2010100000000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTG................................................................................................................22200.2040000000310
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAAC..........................................................................................................20200.2040000000220
.........................................................................................................................................................................................ACAGAGACAGTTGTAGGAAATGTGA...............................................................................................................25200.2040300001000
.........................................................................................................................................................................................ACAGAGACAGTTGTAGGAAA....................................................................................................................20200.1530300000000
......................................................................................................................................................................................................TAGGAAATGTGATGAACCTGGG----.................................................................................................22200.1530100000020
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAA....................................................................................................................21200.1530000003000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGGA----.................................................................................................25200.1530000000300
..............................................................................................................................................................................................GACAGTTGTAGGAAATGTGATGA............................................................................................................23200.1530000000300
.............................................................................................................................................................................................AGACAGTTGTAGGAAATGTGATGA............................................................................................................24200.1020000000020
.......................................................................................................................................................................................CAACAGAGACAGTTGTAGGAAATG..................................................................................................................24200.1020200000000
..........................................................................................................................................................................................CAGAGACAGTTGTAGGAAAT...................................................................................................................20200.1020200000000
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAATGA.................................................................................................................24200.1020200000000
..........................................................................................................................................................................................CAGAGACAGTTGTAGGAAATG..................................................................................................................21200.1020100001000
.........................................................................................................................................................................................ACAGAGACAGTTGTAGGAAAT...................................................................................................................21200.1020000011000
.........................................................................................................................................................................................ACAGAGACAGTTGTAGGAAATGT.................................................................................................................23200.1020000002000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGT.................................................................................................................21200.1020000000110
............................................................................................................................................................................................GAGACAGTTGTAGGAAATGTGAT..............................................................................................................23200.1020000000200
.................................................................................................................................................................................................................................................................................AAGGAGGAAATACCTGGGA.............................19100.1010100000000
......................................................................................................................................................................................................TAGGAAATGTGATGAACCTG.......................................................................................................20200.0510100000000
......................................................................................................................................................................................CCAACAGAGACAGTTGTAGGAAATG..................................................................................................................25200.0510100000000
......................................................................................................................................................................................................TAGGAAATGTGATGAACCTGG......................................................................................................21200.0510100000000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCTG.......................................................................................................23200.0510000000010
..........................................................................................................................................................................................CAGAGACAGTTGTAGGAAATGT.................................................................................................................22200.0510000100000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATC..................................................................................................................20200.0510000000100
..................................................................................................................................................................................................GTTGTAGGAAATGTGATGAACCTG.......................................................................................................24200.0510000000100
....................................................................................................................................................................................................TGTAGGAAATGTGATGAACCT........................................................................................................21200.0510000000010
...........................................................................................................................................................................................................................................................................................................TGCTGGCATCACTGGAAGATGC22200.0510010000000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACC.........................................................................................................21200.0510000000010
...............................................................................................................................................................................................ACAGTTGTAGGAAATGTGATGA............................................................................................................22200.0510100000000
....................................................................................................................................................................................................TGTAGGAAATGTGATGAACC.........................................................................................................20200.0510010000000
.............................................................................................................................................................................................AGACAGTTGTAGGAAATGTG................................................................................................................20200.0510000000100
........................................................................................................................................................................................AACAGAGACAGTTGTAGGAAATGTGAT..............................................................................................................27200.0510100000000
droPer2
AAAACGTGCCTGTCTCCCTTAGAAAGCT--GCAAAGCGATCTAGAAAAGCAGGCCAAAAAACAAACC---GAAAGTAGGTAGAG-GAGTACCAGAGG--------------------------AGTGGGAATATTAACAGCCCAATGTCTAGCTGCGGCGCTTGCAACAAAGCTAGGCATCTCCAACAGAGACAGTTGTAGGAAATGTGATGAACCTGGG----CGGAAACCCTGGAACATCTAATCTGAAACTGTCATGATCTTTTAAGGGCAAGGAGGAAATACCTGGGCGC-CCGGTGCTGGCATCACTGGAAGATGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTGA...............................................................................................................23200.95190190000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTGAT..............................................................................................................24200.50100000010
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGGG----C................................................................................................2620.501010000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGG......................................................................................................24200.408070001
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTG................................................................................................................22200.255032000
............................................................................................................................................................................................GAGACAGTTGTAGGAAATGTG................................................................................................................21200.204000004
..........................................................................................................................................................................................................................................................................TAAGGGCAAGGAGGAAATACCTGG...............................2450.201010000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCTGGG----.................................................................................................25200.153020001
................................................................................................................................................................................................................................................................................CAAGGAGGAAATACCTGGGCGC-..........................2280.131010000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAAC..........................................................................................................20200.102020000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTGATGA............................................................................................................26200.102000002
............................................................................................................................................................................................GAGACAGTTGTAGGAAATGTGATGAACC.........................................................................................................28200.102000002
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGT.................................................................................................................21200.102200000
...................................................................................................................................................................................................TTGTAGGAAATGTGATGAACCT........................................................................................................22200.102110000
.................................................................................................................................................................................................................................................................................AAGGAGGAAATACCTGGGCG............................20110.091010000
...........................................................................................................................................................................................AGAGACAGTTGTAGGAAATGTGATG.............................................................................................................25200.051010000
.......................................................................................................................................................................................CAACAGAGACAGTTGTAGGAAATG..................................................................................................................24200.051010000
............................................................................................................................................................................................GAGACAGTTGTAGGAAATGTGATGAA...........................................................................................................26200.051000001
..............................................................................................................................................................................................GACAGTTGTAGGAAATGTGA...............................................................................................................20200.051000001
............................................................................................................................................................................................GAGACAGTTGTAGGAAATGTGATGA............................................................................................................25200.051000001
..........................................................................................................................................................................................CAGAGACAGTTGTAGGAAATGTGA...............................................................................................................24200.051010000
droVir3
AGTAAGC--------------------A--GCAAAGCGAATACAATAAGCAACGCGAAAATCAAACA---AGAAGCAAAGTGAG-AAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TAGGAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTATCAACCTGGG----CGGAA--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GAACCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GTGACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGGA----TGGGAAACCCAAAATATCTGATATCAA----------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAAAA-------------------------------------------------------AAAACC---GAAAATAGAGAAGG-AAATTCAAGCAG--------------------------ATTGGAGTTATCCAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAAACGTCCCTATCTCCCTAAGAACGAT--CCAAAGCGAGCTAGAGAGACGGGCTGACGCAAGCGCA---AAAAGCAGGTAGAG-GAGTAAT-------TCCGCGTAAGGACTG-------TAGAATGCAATTCTAACAGATCACTGCCTGTCTGCTGCACATGCATTCAAGCTGGGTATTACCGACAACGCCAAATGCCGGAAATGTGATGAATCCGAGGCAAACGAAACCTTGGAGCATCTGATTTGCAAATGTCCGGCCCTAACGAGGGCAAGAATGAGATACCTAGGCTCTCCAGTTCTGGCATAGCTAGAAGATGCSizeHit CountTotal NormTotal
No Reads
droFic1
AATTA---------------------------------------------------------------------------------------------------------------------------GGATTTTAACAGATCATTGACTGGCTGTGTTTCACGCAACCAAATTACGCTCCACCAACATTAGCAATTGCAGGAAATGTGGTGAGTCCTGGGTAATCGAAACACTGAAATCCCTCGTTCGTAAATACACCGCC---------------------------------ATGATACTGGCATTACTTGAAGATGCSizeHit CountTotal NormTotal
No Reads
droEle1
AGGACGTGCCCATCTGCCTGAGAACGCA--CCAGAGCTA-------------------------ACC---AAATGCAGGTGGAG-GAGAAT-------------------------------TAGTGGGAATTCTCACAGGCCACTGTCTAGCCTCGACACACGCAGTCAAACTAAGCATCATCAGCAATGGCAGTTGCAAG-------TTGATGTTGGGGCGAGCGAGTGCTTGGAACATCTTATCTGTAACTGCCCAGCTCTCTCAAGGGCAAGGAGAAGATACCTGGGCTACCCGTTACTGGCATCTCTAGAAGAAACSizeHit CountTotal NormTotal
No Reads
droRho1
GAAAGC---------------------C--CCTAAGCGAACTCAAAAAAAAAATCAGAAAACAATTT---AAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGAAAATGCCTATTTCCCGCCGAACGCT--ACAAAGAGCAGTGAAGAAACAGGCAAACTTAGGCAC------------------TATGTACT-GAAT--------------------------CTTCAGATTCCTCACAGGCCACTGGCTGGCCACATCACAATCAACCACACTCGGAGTACTTAACAGCCGCA-----CAGAAATGTGATAAAACGG-GGCTATTGAAACCATGAAATATCTTATATGCAGTTGCCCGGCTTTCTCACGGGCAAGAAGAAGATACCTCGGTGCCCAAGTAGTGGCATCACTAGGAGACGCSizeHit CountTotal NormTotal
No Reads
droTak1
AAGACCTGCCGAATCT--CAAGAACTATGTGCAAAGAG-----------CGCAACGAAAAACTCAGCCAG--------------TTTGTACT-GCGTCTACCACGGAAAGACTGCAGACTGTTAGTGGGAATCCTTCCAGGCCACTGTCTGGCCACATCACACGCAACCACACTCGGAATATTCAACAGCCGCGCCTGCAGGAAATGTGATGAATCGGGGGCTATGGAAACCCTGGAACATCTTATCTGCAACTGACCGGCTCTCTCTAGAGCAAAAAGAAGATACCTCGGTGCCCCAGTACTGGCATTACTAGGAGACGCSizeHit CountTotal NormTotal
No Reads
droEug1
GCGAAGA------------------------------GCTTTCGAAGAATAGAGCAGAAAACAAACC---GAAAACACGAAAGG-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
AAAACGTTCCTGTCTCCCTTAGAACGCT--CCAAAG---ACTGGAAAGACAGGCCGACACACGACT-----------------------G-------------------------------TTAGTGGGAATTCTTACAGGTCACTACCTAGCTGCGGCACACGCAGTCAAACTGGGCATTACCGACGACGCGAAATGCCGGAAATGTGATGAATTCGAGGCAATCGAAACCTTAGAGCATCTCATGTGCAAGTGTCCGGCCCTAACAAGGGCAAGAATAAACTACCTAGGCGCCCCGGTTCTGGTATCGCTAGAAGATGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................CACACGACT-----------------------G-------------------------------TTAGTGGGAATTCTTACA......................................................................................................................................................................................2811.00101000000000
...................TAGAACGCT--CCAAAG---ACTGGAAAGACAGG............................................................................................................................................................................................................................................................................2940.50200000000002
...................................................................................................................................................................................................................................................................................GAATAAACTACCTAGGCGCCCCGGT.....................2530.33101000000000
...................................................................................................................................................................................................................................................................................GAATAAACTACCTAGGCGCCCCG.......................2330.33101000000000
.............................................................................................................................TGGGAATTCTTACAGGTCACTACCTAGC........................................................................................................................................................................2840.25101000000000
.......................................................................................................................................TACAGGTCACTACCTAGCTGCGGCACA...............................................................................................................................................................2740.25101000000000
......................................................................................................................................................................................................................TTCGAGGCAATCGAAACCTTAGAGCATC...............................................................................2840.25100100000000
.........................GCT--CCAAAG---ACTGGAAAGACAGGC...........................................................................................................................................................................................................................................................................2440.25100000000001
...........................................................................................................................................................................................................................................GAGCATCTCATGTGCAAGTGTCCGG.............................................................2540.25101000000000
...............................................................................................................................GGAATTCTTACAGGTCACTACCTAGC........................................................................................................................................................................2640.25101000000000
...................................................................................................................................................................................................................................AAACCTTAGAGCATCTCATGTG........................................................................2240.25100000010000
.......................................................................................................................................................................................................................................CTTAGAGCATCTCATGTGCA......................................................................2040.25101000000000
....CGTTCCTGTCTCCCTTAGAACGCT--CC.................................................................................................................................................................................................................................................................................................2670.14101000000000
.......................................................................................................................................................................................................CGGAAATGTGATGAATTCGAGGC...................................................................................................2390.11101000000000
....................................................................................................................................................................................................TGCCGGAAATGTGATGAATTCGAGG....................................................................................................2590.11101000000000
..............TCCCTTAGAACGCT--CCAA...............................................................................................................................................................................................................................................................................................18110.09101000000000
.................................................................T-----------------------G-------------------------------TTAGTGGGAATTCTTACAGGTCAC................................................................................................................................................................................26110.09101000000000
.......................................................................................................................................................................................................................................................TGCAAGTGTCCGGCCCTAACAAGG..................................................24120.08101000000000
................................................................................................................................................................CACGCAGTCAAACTGGGCATTACCGAC......................................................................................................................................27150.07100100000000
.........................................................................................................................................................TGCGGCACACGCAGTCAAACTGGGCAT.............................................................................................................................................27160.06101000000000
.........................................................................................................................................................TGCGGCACACGCAGTCAAACTGGGCA..............................................................................................................................................26170.06101000000000
..................................................................................................................................................................CGCAGTCAAACTGGGCATTACCGA.......................................................................................................................................24180.06101000000000
.........................................................................................................................................................TGCGGCACACGCAGTCAAACTGGGC...............................................................................................................................................25180.06101000000000

Generated: 05/18/2015 at 02:43 AM