dps_2043

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	-

Name

Class

Family

Strand

Gypsy8-I_Dpse-int

LTR

Gypsy

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGATCGGTCTGCATCGTGGACTGGTGCCAATGGACGGGATAGAAGAAAAGGTATGGTGAGATGAGGGACCTAAGAACTCGGGAGGCTTACCAGATCCAAGGCGAAACCAAGGGGTTAGTGAAAAGTGAAAAGGGTTAGAAGTGAAAGGTTGTAGCGTGCTCCCAGGAGCGGAGAAATGAGAAGCGTCCAGAAACGCGGAGGGAGGAGCCCAGAGAGAGCCGACGACGACGCGGTCGGCAACGCTTCCGACG ************************************************************......(((..((.((.((........)))).))..))).............***************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902010 ovaries	GSM444067 head	GSM343916 embryo	M059 embryo	SRR902011 testis	V112 male body
..............................................................GAGGGACCTAAGAACTCGGGAGG......................................................................................................................................................................	23	0	1	38.00	38	30	8	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAG.......................................................................................................................................................................	22	0	1	20.00	20	18	2	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGC.....................................................................................................................................................................	24	0	1	16.00	16	3	12	0	0	0	1	0
..............................................................GAGGGACCTAAGAACTCGGGA........................................................................................................................................................................	21	0	1	4.00	4	1	3	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGG.........................................................................................................................................................................	20	0	1	3.00	3	3	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGG..........................................................................................................................................................................	19	0	1	3.00	3	3	0	0	0	0	0	0
.........................................................................................CCAGATCCAAGGCGAAACCAAGGGG.........................................................................................................................................	25	0	1	3.00	3	3	0	0	0	0	0	0
..............................TGGACGGGATAGAAGAAAAGGTATG....................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................GAGCGGAGAAATGAGAAGCGTC................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................ACCAGATCCAAGGCGAAACCAAGG...........................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................................GCTTACCAGATCCAAGGCGAAACC...............................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................GAGAGACCTAAGAACTCGGGAGGC.....................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0
....................................................................................GCTTACCAGATCCAAGGCGAAACCAAGG...........................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................GGGAGGCTTACCAGATCCAAGG......................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................AAACGCGGAGGGAGGAGCCCAGA......................................	23	0	1	1.00	1	0	1	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGCTT...................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................GCTTACCAGATCCAAGGCGAAAC................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
..............................TGGACGGGATAGAAGAAAAGGTATGG...................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................GGTTAGTGAAAAGTGAAAAGGG.....................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGTT.....................................................................................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0	0
AGATCGGTCTGCATCGTGGACTG....................................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................TACCAGATCCAAGGCGACACCAAGGGG.........................................................................................................................................	27	1	1	1.00	1	0	0	0	1	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGT......................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................GGAGCGGAGAACTGATAAGCGC.................................................................	22	3	1	1.00	1	0	0	1	0	0	0	0
...............................................................AGGGACCTAAGAACTCGGG.........................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGCT....................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
........................................AGAAGAAAAGGTATGGTGAGATG............................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................AGGGACCTAAGAACTCGGGAGG......................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................AACTCGGGAGGCTTACCAGATCCAAGG......................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................TTAGAAGTGAAAGGTTGTAGC................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................ACCAGATCCAAGGCGAAACCAAG............................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................AGGGACCTAAGAACTCGGGAGGC.....................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................TACCAGATCCAAGGCGAAACCAAG............................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
..............................TGGACGGGATAGAAGAAAAGGTATGGT..................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................AGGCTTACCAGATCCAAGGCGAAAC................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	1	0	0
........................................................................................ACCAGATCCAAGGCGAAACCAAGGGG.........................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGTA....................................................................................................................................................................	25	2	1	1.00	1	1	0	0	0	0	0	0
........................................................................................ACCAGATCCAAGGCGAAACCAAGGG..........................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................AGGCTTACCAGATCCAAGGCGAA..................................................................................................................................................	23	0	2	0.50	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................GACGCGGTCCACAACGCT.......	18	2	2	0.50	1	1	0	0	0	0	0	0
................................................................................................................................AAAGGGTTAGGGGTGGAAGGT......................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0
...........................CGATGGACGGGATGGGAGAAAA..........................................................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0	0	0
....................................................................................................................................................................TGGGCGGAGAACTGAGAAGCG..................................................................	21	3	4	0.25	1	0	0	1	0	0	0	0
....................................................................................GCTTACCAGATTCAAGGCGAAACCA..............................................................................................................................................	25	1	5	0.20	1	1	0	0	0	0	0	0
..............................................................GAGGGACCCAAGAACTCGGGAGG......................................................................................................................................................................	23	1	5	0.20	1	1	0	0	0	0	0	0
.....................................................................................CTTACCAGATTCAAGGCGAAAC................................................................................................................................................	22	1	5	0.20	1	1	0	0	0	0	0	0
....................................................................................TCTTACCAGATTCAAGGCGAAA.................................................................................................................................................	22	2	5	0.20	1	1	0	0	0	0	0	0
....................................................................................................................................................................GGGGCGGAGAAATGAGAAGGGC.................................................................	22	3	5	0.20	1	0	0	0	1	0	0	0
.......................................................................AAGAACTCGGGAGGCTTACCAG..............................................................................................................................................................	22	0	5	0.20	1	1	0	0	0	0	0	0
........................................................................................................................................................................................ACCCAGAAACGCGGAGGG.................................................	18	2	6	0.17	1	1	0	0	0	0	0	0
.................................................................................................................GTTAGGGAAAGGTGAAAAG.......................................................................................................................	19	2	6	0.17	1	1	0	0	0	0	0	0
....................................................................................................................................................................GGGACGGAGAACTGAGAAGCG..................................................................	21	3	6	0.17	1	0	0	1	0	0	0	0
.................................................................................................................................AAGGGTTAGGGGTGAAAG........................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	1
......................................................GGTGAGATGAGGGACCCAAGAACT.............................................................................................................................................................................	24	1	11	0.09	1	1	0	0	0	0	0	0
....................................................................CCTAAGAGATGGGGAGGCT....................................................................................................................................................................	19	3	13	0.08	1	0	0	0	0	0	0	1
....................................................................................................................................................................TGAACGGAGAAATGAGAAGGG..................................................................	21	3	15	0.07	1	0	0	1	0	0	0	0
....................................................................CCTAAGAAATGGGGAAGCT....................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGATCGGTCTGCATCGTGGACTGGTGCCAATGGACGGGATAGAAGAAAAGGTATGGTGAGATGAGGGACCTAAGAACTCGGGAGGCTTACCAGATCCAAGGCGAAACCAAGGGGTTAGTGAAAAGTGAAAAGGGTTAGAAGTGAAAGGTTGTAGCGTGCTCCCAGGAGCGGAGAAATGAGAAGCGTCCAGAAACGCGGAGGGAGGAGCCCAGAGAGAGCCGACGACGACGCGGTCGGCAACGCTTCCGACG
**************************************************************......(((..((.((.((........)))).))..))).............*****************************************************************************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M040
female body

SRR902010
ovaries

GSM444067
head

GSM343916
embryo

M059
embryo

SRR902011
testis

V112
male body

..............................................................GAGGGACCTAAGAACTCGGGAGG......................................................................................................................................................................

38.00

..............................................................GAGGGACCTAAGAACTCGGGAG.......................................................................................................................................................................

20.00

..............................................................GAGGGACCTAAGAACTCGGGAGGC.....................................................................................................................................................................

16.00

..............................................................GAGGGACCTAAGAACTCGGGA........................................................................................................................................................................

4.00

..............................................................GAGGGACCTAAGAACTCGGG.........................................................................................................................................................................

3.00

..............................................................GAGGGACCTAAGAACTCGG..........................................................................................................................................................................

3.00

.........................................................................................CCAGATCCAAGGCGAAACCAAGGGG.........................................................................................................................................

3.00

..............................TGGACGGGATAGAAGAAAAGGTATG....................................................................................................................................................................................................

2.00

.....................................................................................................................................................................GAGCGGAGAAATGAGAAGCGTC................................................................

1.00

........................................................................................ACCAGATCCAAGGCGAAACCAAGG...........................................................................................................................................

1.00

....................................................................................GCTTACCAGATCCAAGGCGAAACC...............................................................................................................................................

1.00

..............................................................GAGAGACCTAAGAACTCGGGAGGC.....................................................................................................................................................................

1.00

....................................................................................GCTTACCAGATCCAAGGCGAAACCAAGG...........................................................................................................................................

1.00

...............................................................................GGGAGGCTTACCAGATCCAAGG......................................................................................................................................................

1.00

..............................................................................................................................................................................................AAACGCGGAGGGAGGAGCCCAGA......................................

1.00

..............................................................GAGGGACCTAAGAACTCGGGAGGCTT...................................................................................................................................................................

1.00

....................................................................................GCTTACCAGATCCAAGGCGAAAC................................................................................................................................................

1.00

..............................TGGACGGGATAGAAGAAAAGGTATGG...................................................................................................................................................................................................

1.00

................................................................................................................GGTTAGTGAAAAGTGAAAAGGG.....................................................................................................................

1.00

..............................................................GAGGGACCTAAGAACTCGGGAGTT.....................................................................................................................................................................

1.00

AGATCGGTCTGCATCGTGGACTG....................................................................................................................................................................................................................................

1.00

.......................................................................................TACCAGATCCAAGGCGACACCAAGGGG.........................................................................................................................................

1.00

..............................................................GAGGGACCTAAGAACTCGGGAGT......................................................................................................................................................................

1.00

....................................................................................................................................................................GGAGCGGAGAACTGATAAGCGC.................................................................

1.00

...............................................................AGGGACCTAAGAACTCGGG.........................................................................................................................................................................

1.00

..............................................................GAGGGACCTAAGAACTCGGGAGGCT....................................................................................................................................................................

1.00

........................................AGAAGAAAAGGTATGGTGAGATG............................................................................................................................................................................................

1.00

...............................................................AGGGACCTAAGAACTCGGGAGG......................................................................................................................................................................

1.00

..........................................................................AACTCGGGAGGCTTACCAGATCCAAGG......................................................................................................................................................

1.00

......................................................................................................................................TTAGAAGTGAAAGGTTGTAGC................................................................................................

1.00

........................................................................................ACCAGATCCAAGGCGAAACCAAG............................................................................................................................................

1.00

...............................................................AGGGACCTAAGAACTCGGGAGGC.....................................................................................................................................................................

1.00

.......................................................................................TACCAGATCCAAGGCGAAACCAAG............................................................................................................................................

1.00

..............................TGGACGGGATAGAAGAAAAGGTATGGT..................................................................................................................................................................................................

1.00

..................................................................................AGGCTTACCAGATCCAAGGCGAAAC................................................................................................................................................

1.00

........................................................................................ACCAGATCCAAGGCGAAACCAAGGGG.........................................................................................................................................

1.00

..............................................................GAGGGACCTAAGAACTCGGGAGGTA....................................................................................................................................................................

1.00

........................................................................................ACCAGATCCAAGGCGAAACCAAGGG..........................................................................................................................................

1.00

..................................................................................AGGCTTACCAGATCCAAGGCGAA..................................................................................................................................................

0.50

..................................................................................................................................................................................................................................GACGCGGTCCACAACGCT.......

0.50

................................................................................................................................AAAGGGTTAGGGGTGGAAGGT......................................................................................................

0.50

...........................CGATGGACGGGATGGGAGAAAA..........................................................................................................................................................................................................

0.50

....................................................................................................................................................................TGGGCGGAGAACTGAGAAGCG..................................................................

0.25

....................................................................................GCTTACCAGATTCAAGGCGAAACCA..............................................................................................................................................

0.20

..............................................................GAGGGACCCAAGAACTCGGGAGG......................................................................................................................................................................

0.20

.....................................................................................CTTACCAGATTCAAGGCGAAAC................................................................................................................................................

0.20

....................................................................................TCTTACCAGATTCAAGGCGAAA.................................................................................................................................................

0.20

....................................................................................................................................................................GGGGCGGAGAAATGAGAAGGGC.................................................................

0.20

.......................................................................AAGAACTCGGGAGGCTTACCAG..............................................................................................................................................................

0.20

........................................................................................................................................................................................ACCCAGAAACGCGGAGGG.................................................

0.17

.................................................................................................................GTTAGGGAAAGGTGAAAAG.......................................................................................................................

0.17

....................................................................................................................................................................GGGACGGAGAACTGAGAAGCG..................................................................

0.17

.................................................................................................................................AAGGGTTAGGGGTGAAAG........................................................................................................

0.17

......................................................GGTGAGATGAGGGACCCAAGAACT.............................................................................................................................................................................

0.09

....................................................................CCTAAGAGATGGGGAGGCT....................................................................................................................................................................

0.08

....................................................................................................................................................................TGAACGGAGAAATGAGAAGGG..................................................................

0.07

....................................................................CCTAAGAAATGGGGAAGCT....................................................................................................................................................................

0.05

TCTAGCCAGACGTAGCACCTGACCACGGTTACCTGCCCTATCTTCTTTTCCATACCACTCTACTCCCTGGATTCTTGAGCCCTCCGAATGGTCTAGGTTCCGCTTTGGTTCCCCAATCACTTTTCACTTTTCCCAATCTTCACTTTCCAACATCGCACGAGGGTCCTCGCCTCTTTACTCTTCGCAGGTCTTTGCGCCTCCCTCCTCGGGTCTCTCTCGGCTGCTGCTGCGCCAGCCGTTGCGAAGGCTGC ***************************************************************************************************************************************......(((..((.((.((........)))).))..))).............************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo
...............................................................................................................................................................................TACTCTTCGCAGGTCTTTGCGCCTCCCT................................................	28	0	1	3.00	3	3	0
..................................................................................................................................................................................TCTTCGCAGGTCTTTGCGCCTCCCT................................................	25	0	1	3.00	3	3	0
.........................................................................CTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	21	0	5	2.20	11	11	0
..........................................................................TTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	20	0	5	2.20	11	11	0
..............................................................................................................CCCCAATCACTTTTCACTTTTCCCAAT..................................................................................................................	27	0	1	2.00	2	2	0
...................................................................................................................................................................................CTTCGCAGGTCTTTGCGCCTCCCT................................................	24	0	1	2.00	2	2	0
........................................................................TCTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	22	0	5	1.60	8	7	1
.........................................................................................................TGGTTCCCCAATCACTTTTCACTTTT........................................................................................................................	26	0	1	1.00	1	1	0
................ACCTGACCACGGTTACCTGCCCTATCT................................................................................................................................................................................................................	27	0	1	1.00	1	1	0
.........................................................................................................................................................................................AGGTCTTTGCGCCTCCCTCCTCGGGTC.......................................	27	0	1	1.00	1	1	0
...............CACCTGACCACGGTTACCTGCCCTAT..................................................................................................................................................................................................................	26	0	1	1.00	1	1	0
......................................................................AAACTTGAGCCCTCCGAATGGT...............................................................................................................................................................	22	2	1	1.00	1	1	0
....................................................................GGATTCTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	26	0	1	1.00	1	1	0
..................CTGACCACGGTTACCTGCCCTATCTTCT.............................................................................................................................................................................................................	28	0	1	1.00	1	1	0
................................................................................................................................................................................ACTCTTCGCAGGTCTTTGCGCCTCCCT................................................	27	0	1	1.00	1	1	0
....................................................................................................................................................................................TTCGCAGGTCTTTGCGCCTCCCT................................................	23	0	1	1.00	1	1	0
................................................................................................................................TTTCCCAATCTTCACTTTCCAACAT..................................................................................................	25	0	1	1.00	1	0	1
........................................................................................................TTGGTTCCCCAATCACTTTTCACT...........................................................................................................................	24	0	1	1.00	1	1	0
........................................................................................................TTGGTTCCCCAATCACTTTTCACTTT.........................................................................................................................	26	0	1	1.00	1	1	0
.............AGCACCTGACCACGGTTACCTGCCCT....................................................................................................................................................................................................................	26	0	1	1.00	1	1	0
.......................................................................................................................................................................................GCAGGTCTTTGCGCCTCCCT................................................	20	0	1	1.00	1	1	0
...................................................................................................................................................................................TTTCGCAGGTCTTTGCGCCTCCCT................................................	24	1	1	1.00	1	1	0
...........................................................................TGAGCCCTCCGAATGGTCT.............................................................................................................................................................	19	0	5	1.00	5	4	1
................................CTGCCCTATCTTCTTTTCCATACCACT................................................................................................................................................................................................	27	0	1	1.00	1	1	0
........................................................................TCTTGAGCCCTCCGAATGGT...............................................................................................................................................................	20	0	5	0.80	4	4	0
................................................................................CCTCCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................	26	1	3	0.67	2	2	0
...................................................................................CCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................	23	1	3	0.67	2	0	2
........................................................................TCTTGAGCCCTCCGAATGGTC..............................................................................................................................................................	21	0	5	0.40	2	2	0
.......................................................................TTCTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	23	0	5	0.40	2	2	0
............................................................................GAGCCCTCCGAATGGTCT.............................................................................................................................................................	18	0	5	0.40	2	2	0
..................................................................................TCCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................	24	1	3	0.33	1	1	0
.................................................................................CTCCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................	25	1	3	0.33	1	1	0
........................................................................TCTTGAGCCCTCCGAATGG................................................................................................................................................................	19	0	5	0.20	1	1	0
.....................................................................................GAATGGTCTAAGTTCCGCTTTGGT..............................................................................................................................................	24	1	5	0.20	1	1	0
.....................................................................................GAATGGTCTAAGTTCCGCTTTGGTT.............................................................................................................................................	25	1	5	0.20	1	1	0
........................................................................ACTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	22	1	5	0.20	1	1	0
.......................................................................AACTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	23	2	5	0.20	1	1	0
.........................................................................ATTGAGCCCTCCGAATGGTCT.............................................................................................................................................................	21	1	5	0.20	1	1	0
..........................................................................TTGAGCCCTCCGAATTGTCT.............................................................................................................................................................	20	1	5	0.20	1	1	0
..........................................................................TTGAGCCCTCCGAATGGTC..............................................................................................................................................................	19	0	5	0.20	1	1	0
....................................................................................CGAATGGTCTAAGTTCCGCTTTG................................................................................................................................................	23	1	5	0.20	1	1	0
........................................................................AATTGAGCCCTCCGAATGGT...............................................................................................................................................................	20	2	5	0.20	1	1	0
...........................................................................AGAGCCCTCCGAATGGTCT.............................................................................................................................................................	19	1	5	0.20	1	1	0
........................................................................CCTTGAGCCCTCCGAATGGTC..............................................................................................................................................................	21	1	5	0.20	1	1	0
.......................................................................TTCTTGAGCCCTCCGAATGGTC..............................................................................................................................................................	22	0	5	0.20	1	1	0
............................................................................................CTAAGTTCCGCTTTGGTT.............................................................................................................................................	18	1	6	0.17	1	1	0
.......................................................................................ATGGTCTAAGTTCCGCTTTGGTT.............................................................................................................................................	23	1	6	0.17	1	1	0
.........................................................................................GGTCTAAGTTCCGCTTTGGC..............................................................................................................................................	20	2	6	0.17	1	1	0
........................................................................AAATGAGCCCTCCGAATGGT...............................................................................................................................................................	20	3	6	0.17	1	1	0
.....................ACCACGGGTTCCCGCCCTAT..................................................................................................................................................................................................................	20	3	7	0.14	1	1	0
.......................................................................AACTTGAGCCCTCCGAATGGT...............................................................................................................................................................	21	2	20	0.05	1	1	0

TCTAGCCAGACGTAGCACCTGACCACGGTTACCTGCCCTATCTTCTTTTCCATACCACTCTACTCCCTGGATTCTTGAGCCCTCCGAATGGTCTAGGTTCCGCTTTGGTTCCCCAATCACTTTTCACTTTTCCCAATCTTCACTTTCCAACATCGCACGAGGGTCCTCGCCTCTTTACTCTTCGCAGGTCTTTGCGCCTCCCTCCTCGGGTCTCTCTCGGCTGCTGCTGCGCCAGCCGTTGCGAAGGCTGC
*****************************************************************************************************************************************......(((..((.((.((........)))).))..))).............**************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M040
female body

M059
embryo

...............................................................................................................................................................................TACTCTTCGCAGGTCTTTGCGCCTCCCT................................................

3.00

..................................................................................................................................................................................TCTTCGCAGGTCTTTGCGCCTCCCT................................................

3.00

.........................................................................CTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

2.20

..........................................................................TTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

2.20

..............................................................................................................CCCCAATCACTTTTCACTTTTCCCAAT..................................................................................................................

2.00

...................................................................................................................................................................................CTTCGCAGGTCTTTGCGCCTCCCT................................................

2.00

........................................................................TCTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

1.60

.........................................................................................................TGGTTCCCCAATCACTTTTCACTTTT........................................................................................................................

1.00

................ACCTGACCACGGTTACCTGCCCTATCT................................................................................................................................................................................................................

1.00

.........................................................................................................................................................................................AGGTCTTTGCGCCTCCCTCCTCGGGTC.......................................

1.00

...............CACCTGACCACGGTTACCTGCCCTAT..................................................................................................................................................................................................................

1.00

......................................................................AAACTTGAGCCCTCCGAATGGT...............................................................................................................................................................

1.00

....................................................................GGATTCTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

1.00

..................CTGACCACGGTTACCTGCCCTATCTTCT.............................................................................................................................................................................................................

1.00

................................................................................................................................................................................ACTCTTCGCAGGTCTTTGCGCCTCCCT................................................

1.00

....................................................................................................................................................................................TTCGCAGGTCTTTGCGCCTCCCT................................................

1.00

................................................................................................................................TTTCCCAATCTTCACTTTCCAACAT..................................................................................................

1.00

........................................................................................................TTGGTTCCCCAATCACTTTTCACT...........................................................................................................................

1.00

........................................................................................................TTGGTTCCCCAATCACTTTTCACTTT.........................................................................................................................

1.00

.............AGCACCTGACCACGGTTACCTGCCCT....................................................................................................................................................................................................................

1.00

.......................................................................................................................................................................................GCAGGTCTTTGCGCCTCCCT................................................

1.00

...................................................................................................................................................................................TTTCGCAGGTCTTTGCGCCTCCCT................................................

1.00

...........................................................................TGAGCCCTCCGAATGGTCT.............................................................................................................................................................

1.00

................................CTGCCCTATCTTCTTTTCCATACCACT................................................................................................................................................................................................

1.00

........................................................................TCTTGAGCCCTCCGAATGGT...............................................................................................................................................................

0.80

................................................................................CCTCCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................

0.67

...................................................................................CCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................

0.67

........................................................................TCTTGAGCCCTCCGAATGGTC..............................................................................................................................................................

0.40

.......................................................................TTCTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

0.40

............................................................................GAGCCCTCCGAATGGTCT.............................................................................................................................................................

0.40

..................................................................................TCCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................

0.33

.................................................................................CTCCGAATGGTCTAAGTTCCGCTTT.................................................................................................................................................

0.33

........................................................................TCTTGAGCCCTCCGAATGG................................................................................................................................................................

0.20

.....................................................................................GAATGGTCTAAGTTCCGCTTTGGT..............................................................................................................................................

0.20

.....................................................................................GAATGGTCTAAGTTCCGCTTTGGTT.............................................................................................................................................

0.20

........................................................................ACTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

0.20

.......................................................................AACTTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

0.20

.........................................................................ATTGAGCCCTCCGAATGGTCT.............................................................................................................................................................

0.20

..........................................................................TTGAGCCCTCCGAATTGTCT.............................................................................................................................................................

0.20

..........................................................................TTGAGCCCTCCGAATGGTC..............................................................................................................................................................

0.20

....................................................................................CGAATGGTCTAAGTTCCGCTTTG................................................................................................................................................

0.20

........................................................................AATTGAGCCCTCCGAATGGT...............................................................................................................................................................

0.20

...........................................................................AGAGCCCTCCGAATGGTCT.............................................................................................................................................................

0.20

........................................................................CCTTGAGCCCTCCGAATGGTC..............................................................................................................................................................

0.20

.......................................................................TTCTTGAGCCCTCCGAATGGTC..............................................................................................................................................................

0.20

............................................................................................CTAAGTTCCGCTTTGGTT.............................................................................................................................................

0.17

.......................................................................................ATGGTCTAAGTTCCGCTTTGGTT.............................................................................................................................................

0.17

.........................................................................................GGTCTAAGTTCCGCTTTGGC..............................................................................................................................................

0.17

........................................................................AAATGAGCCCTCCGAATGGT...............................................................................................................................................................

0.17

.....................ACCACGGGTTCCCGCCCTAT..................................................................................................................................................................................................................

0.14

.......................................................................AACTTGAGCCCTCCGAATGGT...............................................................................................................................................................

0.05

Species	Coordinate	ID	Alignment
dp5	Unknown_group_489:6748-6998 -	dps_2043	AGATCGGTCTGCATCGTGGACTGGTGCCAATGGACGGGATAGAAGAAAAGGTATGGTGAGATGAGGGACCTAAGAACTCGGGAGGCTTACCAGATCCAAGGCGAAACCA----------------------------AGGGGTTAGTGAAAAGTGAAAAGGGTTAGAAGTGAAAGGTTGTAGCGTGCTCCCAGGAGCGGAGAAATGAGAAGCGTCCAGAAACGCGGAGGGAGGAGCCCAGAGAGAGCCGACGACGACGCGGTCGGCAACGCT-------TCCGACG
droPer2	scaffold_2351:907-1146 +		AGATCGGTCGGCACCGTGGACTGGGGCCCAAGGACGGGCTGGAAGAAAAGGCAAGGTGAGATGAGGAACCCAAGAGCTCGGGAGGCTTACCAGATTCAAGGCGAAGCCAAACAACCGACGCCAGACCTGTAAGTAGAAAGGGCCATTAAAAATCAAAAAAAAAAAAAAAAAAAAGGGAA----------------------------------------------AAAAGGGGAACCGAAGGAAAGCTAACAAAACCACGGGGGGCACCATAGGGTTAACGCGGCG
droWil2	scf2_1100000004968:2084229-2084268 +		G------------------------------------GCTATAAAGAAAAACATGTTGAGATGAAGGAATTAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301377:30712-30749 -		GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGTCCAAGGAGACGAAGGGAGGAGCCCAAGGA-------------------------------------------

Species

Coordinate

Alignment

dp5

Unknown_group_489:6748-6998 -

dps_2043

AGATCGGTCTGCATCGTGGACTGGTGCCAATGGACGGGATAGAAGAAAAGGTATGGTGAGATGAGGGACCTAAGAACTCGGGAGGCTTACCAGATCCAAGGCGAAACCA----------------------------AGGGGTTAGTGAAAAGTGAAAAGGGTTAGAAGTGAAAGGTTGTAGCGTGCTCCCAGGAGCGGAGAAATGAGAAGCGTCCAGAAACGCGGAGGGAGGAGCCCAGAGAGAGCCGACGACGACGCGGTCGGCAACGCT-------TCCGACG

droPer2

scaffold_2351:907-1146 +

AGATCGGTCGGCACCGTGGACTGGGGCCCAAGGACGGGCTGGAAGAAAAGGCAAGGTGAGATGAGGAACCCAAGAGCTCGGGAGGCTTACCAGATTCAAGGCGAAGCCAAACAACCGACGCCAGACCTGTAAGTAGAAAGGGCCATTAAAAATCAAAAAAAAAAAAAAAAAAAAGGGAA----------------------------------------------AAAAGGGGAACCGAAGGAAAGCTAACAAAACCACGGGGGGCACCATAGGGTTAACGCGGCG

droWil2

scf2_1100000004968:2084229-2084268 +

G------------------------------------GCTATAAAGAAAAACATGTTGAGATGAAGGAATTAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droBia1

scf7180000301377:30712-30749 -

GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGTCCAAGGAGACGAAGGGAGGAGCCCAAGGA-------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

AGATCGGTCTGCATCGTGGACTGGTGCCAATGGACGGGATAGAAGAAAAGGTATGGTGAGATGAGGGACCTAAGAACTCGGGAGGCTTACCAGATCCAAGGCGAAACCA----------------------------AGGGGTTAGTGAAAAGTGAAAAGGGTTAGAAGTGAAAGGTTGTAGCGTGCTCCCAGGAGCGGAGAAATGAGAAGCGTCCAGAAACGCGGAGGGAGGAGCCCAGAGAGAGCCGACGACGACGCGGTCGGCAACGCT-------TCCGACG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................GAGGGACCTAAGAACTCGGGAGG.........................................................................................................................................................................................................	23	1	38.00	38	0	30	0	0	0	0	0	8	0	0
..............................................................GAGGGACCTAAGAACTCGGGAG..........................................................................................................................................................................................................	22	1	20.00	20	0	18	0	0	0	0	0	2	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGC........................................................................................................................................................................................................	24	1	16.00	16	0	3	0	0	0	0	0	12	1	0
..............................................................GAGGGACCTAAGAACTCGGGA...........................................................................................................................................................................................................	21	1	4.00	4	0	1	0	0	0	0	0	3	0	0
..............................................................GAGGGACCTAAGAACTCGGG............................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGG.............................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................CCAGATCCAAGGCGAAACCA----------------------------AGGGG................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................TGGACGGGATAGAAGAAAAGGTATG.......................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GAGCGGAGAAATGAGAAGCGTC.......................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................ACCAGATCCAAGGCGAAACCA----------------------------AGG..................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................GCTTACCAGATCCAAGGCGAAACC..................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................GCTTACCAGATCCAAGGCGAAACCA----------------------------AGG..................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................GGGAGGCTTACCAGATCCAAGG.........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AAACGCGGAGGGAGGAGCCCAGA.............................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGCTT......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
....................................................................................GCTTACCAGATCCAAGGCGAAAC...................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................TGGACGGGATAGAAGAAAAGGTATGG......................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................GGTTAGTGAAAAGTGAAAAGGG............................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGTT........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0
AGATCGGTCTGCATCGTGGACTG.......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGT.........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................AGGGACCTAAGAACTCGGG............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGCT.......................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................AGAAGAAAAGGTATGGTGAGATG...............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................AGGGACCTAAGAACTCGGGAGG.........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................AACTCGGGAGGCTTACCAGATCCAAGG.........................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................TTAGAAGTGAAAGGTTGTAGC.......................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................ACCAGATCCAAGGCGAAACCA----------------------------AG...................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................AGGGACCTAAGAACTCGGGAGGC........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TACCAGATCCAAGGCGAAACCA----------------------------AG...................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................TGGACGGGATAGAAGAAAAGGTATGGT.....................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................AGGCTTACCAGATCCAAGGCGAAAC...................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................ACCAGATCCAAGGCGAAACCA----------------------------AGGGG................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................GAGGGACCTAAGAACTCGGGAGGTA.......................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................ACCAGATCCAAGGCGAAACCA----------------------------AGGG.................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................AGGCTTACCAGATCCAAGGCGAA.....................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................AAGAACTCGGGAGGCTTACCAG.................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGATCGGTCGGCACCGTGGACTGGGGCCCAAGGACGGGCTGGAAGAAAAGGCAAGGTGAGATGAGGAACCCAAGAGCTCGGGAGGCTTACCAGATTCAAGGCGAAGCCAAACAACCGACGCCAGACCTGTAAGTAGAAAGGGCCATTAAAAATCAAAAAAAAAAAAAAAAAAAAGGGAA----------------------------------------------AAAAGGGGAACCGAAGGAAAGCTAACAAAACCACGGGGGGCACCATAGGGTTAACGCGGCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................ATGAGGAACCCAAGAGCTCGGG............................................................................................................................................................................................................	22	4	1.00	4	0	4	0	0	0	0
............................................................ATGAGGAACCCAAGAGCTCGGGA...........................................................................................................................................................................................................	23	4	0.75	3	0	3	0	0	0	0
..............................................................GAGGAACCCAAGAGCTCGGGAGG.........................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
............................................................ATGAGGAACCCAAGAGCTCGGGAGA.........................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
............................................................ATGAGGAACCCAAGAGCTCGGGAG..........................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................AACCGAAGGAAAGCTAACAAAACC.............................	24	5	0.20	1	0	1	0	0	0	0
................................................................................................................................................................AAAAAAAAAAAAAAGGGAA----------------------------------------------AA...........................................................	21	5	0.20	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................AACCGAAGGAAAGCTAACAAAAC..............................	23	5	0.20	1	0	1	0	0	0	0
.......................................................................................TACCAGATTCAAGGCGAAGCC..................................................................................................................................................................................	21	17	0.18	3	0	3	0	0	0	0
...............................GGACGGGCTGGAAGAAAAGGC..........................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0
....................................................................................GCTTACCAGATTCAAGGCGAAGCCAAA...............................................................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0
.......................................................................................TACCAGATTCAAGGCGAAGCCAAAC..............................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0
.......................................................................................TACCAGATTCAAGGCGAAGCCAAACAAC...........................................................................................................................................................................	28	16	0.06	1	1	0	0	0	0	0
.......................................................................................TACCAGATTCAAGGCGAAGCCAAACAAA...........................................................................................................................................................................	28	17	0.06	1	0	1	0	0	0	0

droWil2

G------------------------------------GCTATAAAGAAAAACATGTTGAGATGAAGGAATTAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................TAAAGAAAAACATGTTGAGATGAAGGA..........................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0
..............................................AAAAACATGTTGAGATGAAGG...........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...............................................AAAACATGTTGAGATGAAGGA..........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...................................................CATGTTGAGATGAAGGAATTA......................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

droBia1

GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGTCCAAGGAGACGAAGGGAGGAGCCCAAGGA-------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dps_2043

Unknown_group_489:6798-6948 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.9	-6.2	-6.2