ID:

dps_2024

 Coordinate:

Unknown_group_43:16289-16439 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.9 -22.8 -22.7

Flybase annnotation

exon [dpse_GLEANR_11879:4]; CDS [Dpse\GA10795-cds]; intron [Dpse\GA10795-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
(TTATA)nSimple_repeatSimple_repeat+
mature
  1. dps_2024  Unknown_group_43:16373-16397 +
  2. Unknown_group_328:5770-5794 -
  3. Unknown_group_296:332-356 -
  4. Unknown_group_254:10941-10965 +
  5. Unknown_group_829:55-79 +
  6. Unknown_singleton_28:248-272 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAAGGCATTACTAGGTAGCGCACAAGCCCCAGTTCAAGGTACAGCAACAGGTGTGTAATATTGTATATTTATTTATTTATTTATATAGAAAGATGTTAGAGTTAAAACTAATCTAGCTTATTTAATGATAGCGCTGGTTACTATGACCTTCGGCTATGTTGCTATTATGTTACATTATGCTTATTATTTTATATTTATTATATGTGAGATGTATTACATGGGTTTTATATTAGAGTTAGATTAATGGATAT
**************************************************..(((((((((((((((..((......))..)))))))(((...((((((...........))))))...)))..(((((((((((((((...)))))...)))......)))))))))))))))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 GSM343916
embryo
 V112
male body		 GSM444067
head
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGT............................................................................................ 25 0 6 11.00 66 62 2 1 1 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATG............................................................................................. 24 0 6 5.50 33 30 2 0 1 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGTTG.......................................................................................... 23 0 6 4.83 29 27 1 0 0 1 0
................................................................................................................................TAGCGCTGGTTACTATGACCTTCGG.................................................................................................. 25 0 1 3.00 3 2 1 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGTTGC......................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
.........................................................................................................................................TTACTATGACCTTCGGCTATGTTG.......................................................................................... 24 0 6 1.50 9 9 0 0 0 0 0
...........................................................................................................................................ACTATGACCTTCGGCTATGTTG.......................................................................................... 22 0 6 1.17 7 7 0 0 0 0 0
..............................................................................................................................GATAGCGCTGGTTACTATGACCTTCGGC................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
...................GCACAAGCCCCAGTTCAAGGTACAGC.............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................TGATAGCGCTGGGTACTAGGACCT...................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTA............................................................................................... 22 0 7 1.00 7 4 0 3 0 0 0
.....................................................................................................................................CTGGTTACTATGACCTTCGGC................................................................................................. 21 0 7 0.86 6 6 0 0 0 0 0
.................................................................................................................................................................................................................................TATATTAGAGTTAGATTAATGGATA. 25 0 7 0.86 6 0 0 6 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGTT........................................................................................... 22 0 6 0.83 5 5 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGTTG.......................................................................................... 27 0 6 0.83 5 5 0 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATG............................................................................................. 20 0 6 0.83 5 5 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGC................................................................................................. 20 0 7 0.71 5 5 0 0 0 0 0
.......................................................................................................................................GGTTACTATGACCTTCGGCTATGT............................................................................................ 24 0 6 0.67 4 4 0 0 0 0 0
.................................................................................................................TAGCTTATTTAATGATAGCACTGGT................................................................................................................. 25 1 3 0.67 2 2 0 0 0 0 0
.....................................................................................................................................CTGGTTACTATGACCTTCGGCTATGT............................................................................................ 26 0 6 0.67 4 3 1 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGTT........................................................................................... 26 0 6 0.50 3 3 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGTA........................................................................................... 26 1 6 0.50 3 3 0 0 0 0 0
.......................................................................................................................................GGTTACTATGACCTTCGGCTATG............................................................................................. 23 0 6 0.50 3 3 0 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGT............................................................................................ 21 0 6 0.50 3 3 0 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGTTGA......................................................................................... 24 1 6 0.50 3 1 0 2 0 0 0
........................................................................................................................................GTTACTATGACCTTCGGC................................................................................................. 18 0 7 0.43 3 2 1 0 0 0 0
................................................................................................................CTAGCTTATTTAATGATAGCAC..................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
.................................................................................................................TAGCTTATTTAATGATAGCACTGGTT................................................................................................................ 26 1 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGTTGAAA....................................................................................... 26 2 6 0.33 2 2 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGC............................................................................................ 25 1 6 0.33 2 0 2 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGTA........................................................................................... 22 1 6 0.33 2 2 0 0 0 0 0
...................................................................................................................................................................................................................................TATTAGAGTTAGATTAATGGATA. 23 0 7 0.29 2 2 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTAT.............................................................................................. 23 0 7 0.29 2 2 0 0 0 0 0
.......................................................................................................................................GGTTACTATGACCTTCGGCTA............................................................................................... 21 0 7 0.29 2 2 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCT................................................................................................ 21 0 7 0.29 2 2 0 0 0 0 0
GAACGCATGACTAGGAAGCG....................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1
.....................................................................................................................................TTGGTTACTATGACCTTCGGCTATGT............................................................................................ 26 1 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGTAG.......................................................................................... 27 1 6 0.17 1 1 0 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTATGTTT.......................................................................................... 23 1 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................TTGTTACTATGACCTTCGGCTATGT............................................................................................ 25 1 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................................ACTATGACCTTCGGCTATGT............................................................................................ 20 0 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................TTGTTACTATGACCTTCGGCTATG............................................................................................. 24 1 6 0.17 1 0 1 0 0 0 0
.........................................................................................................................................TTACTATGACCTTCGGCTATGTC........................................................................................... 23 1 6 0.17 1 0 1 0 0 0 0
.......................................................................................................................................GGTTACTATGACCTTCGGCTATGTT........................................................................................... 25 0 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................TGGGTACTATGACCTTCGGCTATGT............................................................................................ 25 1 6 0.17 1 0 1 0 0 0 0
.........................................................................................................................................GTACTATGACCTTCGGCTATGTTG.......................................................................................... 24 1 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCATCGGCTATG............................................................................................. 24 1 6 0.17 1 0 0 0 1 0 0
............................................................................................................TAACCTAGCTTATTTAATGA........................................................................................................................... 20 1 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................................ACTATGACCTTCGGCTATG............................................................................................. 19 0 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGTGG.......................................................................................... 27 1 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................CTGGTTACTATGACCTTCGGCTATG............................................................................................. 25 0 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................GGTTACTATGACCTTCGGCTAT.............................................................................................. 22 0 7 0.14 1 1 0 0 0 0 0
............................................................................................................................................CTATGACCTTCGGCTATGTTG.......................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TTAGAGTTAGATTAATGGATA. 21 0 7 0.14 1 0 0 0 0 1 0
.................................................................................................................................................................................................................................TATATTAGAGTTAGATTAATGGATAC 26 1 7 0.14 1 0 0 1 0 0 0
......................................................................................................................................TGGTTACTCTGACCTTCGGCTATGA............................................................................................ 25 2 7 0.14 1 0 0 0 1 0 0
........................................................................................................................................GTTACTATGACCTTCGGCTA............................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................ATATTAGAGTTAGATTAATGG.... 21 0 7 0.14 1 0 0 0 0 1 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTATGTAA.......................................................................................... 27 2 7 0.14 1 1 0 0 0 0 0
..........................................................................................................................................TACTATGACCTTCGGCTAT.............................................................................................. 19 0 7 0.14 1 0 1 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTAC.............................................................................................. 23 1 7 0.14 1 1 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGGCTCTGA............................................................................................ 25 2 7 0.14 1 0 0 0 1 0 0
.....................................................................................................................................CTGGTTACTATGACCTTCGGCAC............................................................................................... 23 2 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................AATGGTAGCGCTGGTCATTA............................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................CTGGTTACTATGACCTTCGGCTAT.............................................................................................. 24 0 7 0.14 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................TAGAGTTAGATTAATGGATA. 20 0 7 0.14 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TTTATATTAGAGTTAGATTAATGGA... 25 0 7 0.14 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................TATATTAGAGTTAGATTAATGG.... 22 0 7 0.14 1 1 0 0 0 0 0
.................................................................................................................................AGCTCTGGTTACTATGACCTTCGAC................................................................................................. 25 2 7 0.14 1 0 1 0 0 0 0
.......................................................................................................................................GGTTACTATGACCTTCGGC................................................................................................. 19 0 7 0.14 1 1 0 0 0 0 0
......................................................................................................................................TGGTTACTATGACCTTCGG.................................................................................................. 19 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................................................................GGTTACTATGACCTTCGGCTATGA............................................................................................ 24 1 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................................ACTATGACCTTCGGCTATGTTA.......................................................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.............................................................................................................................................TATGACCTTCGGCTATGTT........................................................................................... 19 0 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................GTTACTATGACCTTCGGCTATGTTAA......................................................................................... 26 2 8 0.13 1 1 0 0 0 0 0
..........................................................................................................................................TAATATGACCTTCGGCTATGC............................................................................................ 21 2 8 0.13 1 0 1 0 0 0 0
...........................................................................................................................CATGATAGCGGTGTTTACT............................................................................................................. 19 3 9 0.11 1 1 0 0 0 0 0
........................................................................................................................................TCAACTATGACCTTCGGCTA............................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTTTATATGAGAGTTTGATC......... 20 3 19 0.05 1 1 0 0 0 0 0
..............................................................................................................................GCTAACGCTGGCTACTATG.......................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CTTCCGTAATGATCCATCGCGTGTTCGGGGTCAAGTTCCATGTCGTTGTCCACACATTATAACATATAAATAAATAAATAAATATATCTTTCTACAATCTCAATTTTGATTAGATCGAATAAATTACTATCGCGACCAATGATACTGGAAGCCGATACAACGATAATACAATGTAATACGAATAATAAAATATAAATAATATACACTCTACATAATGTACCCAAAATATAATCTCAATCTAATTACCTATA
**************************************************..(((((((((((((((..((......))..)))))))(((...((((((...........))))))...)))..(((((((((((((((...)))))...)))......)))))))))))))))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body
..............CATCGGGTGCTCGGGGTCA.......................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0
................................................................................................................GATCGAATAAATTACTATCGTGACC.................................................................................................................. 25 1 3 0.33 1 1 0 0
............................................................................................................ATTGGATCGAATAAATTACTATCG....................................................................................................................... 24 1 5 0.20 1 1 0 0
.............................................................................................................TTGGATCGAATAAATTACTATCG....................................................................................................................... 23 1 5 0.20 1 1 0 0
.....................................................................................................................................GACCAATGATACTGGAAGCCGATAC............................................................................................. 25 0 6 0.17 1 1 0 0
.......................................................................................................................................CCAATGATACTGGAAGCCGATACA............................................................................................ 24 0 6 0.17 1 1 0 0
............................................................................................................ATTGGATCGAATAAATTACT........................................................................................................................... 20 1 6 0.17 1 1 0 0
...........................................................................................................................................TGATACTGGAAGCCGATACAAC.......................................................................................... 22 0 6 0.17 1 0 1 0
.......................................................................................................................................CCAATGATACTGGAAGCCGATAC............................................................................................. 23 0 6 0.17 1 1 0 0
.....................................................................................................................................GACCAATGATACTGGAAGCCGATA.............................................................................................. 24 0 7 0.14 1 1 0 0
...........................................................................................................................................TGATACTGGAAGCCGATATAA........................................................................................... 21 1 7 0.14 1 0 0 1
........................................................................................................................................CAATGATACTGGAAGCCGATA.............................................................................................. 21 0 7 0.14 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_43:16239-16489 + dps_2024 GAAG---GCATTAC-----TAGGTAGCGCACAAGCCCCAGTTC-----AAGGTACA-GCAACAGGTGT------------GTAAT---------------------ATTGT-----------ATATTTATTTA------T--TTATTTAT---ATAGAAAGA--TGTTAGAGT---TAAAA-C-TAATCTAGCTTATT----TAATGATAGCGCTGGTTACTAT-GACCTTCGGCTATGTTGCT-----------------ATT--------------ATGTTACATTATGCTT--ATTA--------------------------------------TTTTAT---------------ATTTATT-ATA---TGTGAGATGT--------------------------------------ATTACAT--G------------------------G-GTTTTATA------------------TTA-----------------------GAGTTAGATTAATGGATAT
droPer2 scaffold_103:84201-84451 + dpe_643 GAAG---GCATTAC-----TAGGTAGCGCACAAGCCCCAGTTC-----AAGGTACA-GCAACAGGTGT------------GTAAT---------------------ATTGT-----------ATATTTATTTA------T--TTATTTAT---ATAGAAAGA--TGTTAGAGT---TAAAA-C-TAATCTAGCTTATT----TAATGATAGCGCTGGTTACTAT-GACCTTCGGCTATGTTGCT-----------------ATT--------------ATGTTACATTATGCTT--ATTA--------------------------------------TTTTAT---------------ATTTATT-ATA---TGTGAGATGT--------------------------------------ATTACAT--G------------------------G-GTTTTATA------------------TTA-----------------------GAGTTAGATTAATGGATAT
droWil2 scf2_1100000004412:7388-7616 - GCCCC---------AG-------------------------TGAAATCACGACAC---------------------------AAT---------------------AATTT-ATGTATAT-TTTATTTATTT----------TA-TTTATAATAAAGTTAATAA------TAAT--TAAAA-TTATTACTAGCTTATT----AACT-AAAGCGCTGGCGGCTAA-GGCGTTCGGCTTGGTATTTACA-TACATTTATATTTAC----AAAATTGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATTT----------------ACATATTTAGATATTTACATATTA-----------------------ACATACTTATAATTACAAT
droVir3 scaffold_12970:904226-904421 + ACACT---------AA---------------------------------------------CACAGGC------------GCAGG---------------------ATGGC-----------TTATTTATTTA------T--TT------A--ATAGTTAGGTA------TAATTAAAAAT-T-AAGACTAACTTAT-----TTCT-AAAGCACTGGCTGCGGGGGGGCTTCGGCTTGCT-GCT-----------------AT------------------------------------ACTTATTTACATTTTTTGTATA---------------------------------------CATATT-ACA---C----------------------------------------------------TT--ACATATTTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGCGATAT
droMoj3 scaffold_6498:2441012-2441250 - GCAAA---------A------------------GCATCAGATA-----A-AGTACA-GATAAAGTTAG------------ATAACAAGGTAATAGAAGCATTCAATAAAAT-----------TTATTTATTTA------T--TTAT-C-TT--AGAGTTAGAGT------TAATTA--AAA-TTAAAACTAACTTAAAT---TTTT-AAAGCGCTGGCTGCATG-GGCCTTCGGCTTATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TTTTAACATATTT---------------------------------------------------------------------------------------------ACATATTTTACTTA---TAATGGG-TT------------------TTAAA---------------------GGTTTATAGGATGTGGTAG
droGri2 scaffold_14822:613654-613673 + CAAG---GCGCTCC-----TCGGTGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12984:333475-333727 - AGTGCATGCGCTAC-----AA----------------------------AAGTACA-ACAAAGCGCATGCGAATCTGGGAGAAAC---------------------AAAGA-----------ATATTCATTTA------T--TTAT-TATT--AAAGATAGAGA------AGTTTACAAAA-C-TAGACTAACTTAGT----TGGT-AAAGCGCTGGCGGCAA--GGCCTTCGGCTTTTAAGGTTAATGATATTTAAGTCTAT----TACATAGTA--TGATTACAT---------------------------------------------------------------ATTGTT------------------------TTTTGTATTTAGGCTACTTAGTTG-GTAGA------------------------------------------TTT---------------------------------TATTTATGTACATTTTGAGT--------------ATTTTT
droBip1 scf7180000396045:3234-3476 + AATTG-----------------------------------------------------------ATTT------------TTATT---------------------ATTTT-ATAT-CAT-TTTATTATT------ATTA--TTAT-TATT--AAAGGTAGAAA------AGTTTACAAAA-C-TAGACTAGCTTAA-----TGAT-ATAGCGCTGGTTACTGT-GGCCTTCGGCTATGTGAGTTATTGGTGCTTAAGTCTTAAGG---GATGATATATATATACA----------------------------TGTTGTG-----------TCTTAACTTAAT---------------ATTTAACTGTTATC---------------------TATGT--------------------------GTTCTGTACATT--------------------ATTTT-TC------------------TTAAA---------------------ATTAAGCAACTAGTCTTGT
droKik1 scf7180000302382:987924-988122 - AACAA-----------------------------------------------------------TTTT------------GT--------------------CGATAATATT------TA-TTTATTTATTTA------T--TTAT-TATT--AAAGATAGAGA------AGTTTACAAAA-C-TAAACTAACTTAGT----TGGT-AAAGCGCTGGCAACAG--GGCCTTCGGCTTTTAAGATTCATGATATT-ATATATATTGTTT----------TAATTACAT------------------------------------------------------------------------AT---------------TTGACATTGTAGTTTGGCTATATAGTTG-GTA----------------------------------------------------------------------------------------------------------ATTTTTATTTATAT
droFic1 scf7180000451601:4925-5156 - CCCAA----------------------------------ATTC-----ATATGA--------------------------AAAAC---------------------AATAT-ATATACATTATTATTATT------ATTA--TTAT-TATA--AAAGATAGAAA------AGTTTACAAAA-C-TAAGCTAACTTATG----TGGT-ACAGCACTGGCAACGG--GGCCTTAGGCTATGTGGGATTTGGATGGT-GTACA---------------------------------------------------------TGTT-----------TCTTAACCTAATAATCATATTATTATTATTT--------------------------------------------------CTT---------ATGTCGTACAATTAATTAATTAG----TTT---------------------------------T-----------------TT-TTTTTTAATTTTGTGGTAT
droEle1 scf7180000490760:1829-2029 - TTAT----------------------------------------------------------------------------------------------------------------------TTATTTATTTA------T--TTTTTTATACAATGCTAACTAA-----TAGT---TAAAACTAGGAGTTAACAAAAATTGTGGTT-AGAGCTTTAGCTGCAAGAGGCCTTCAGCTCTGAGGGTG-----------------GT--------------TTAGTATTTTATACTAGCATTA--------------------------------------TTTAATT--------------ATTTATT-TTA---TATTA-TTAT--------------------------------------TCTACTT--A------------------------TGGTTTTATA------------------T-ATA---------------------TATATACATTTTCTGATGA
droRho1 scf7180000777143:3618-3716 - ATATT---------GT--------------------------------------------------------------------------------------TGCTTATTTT------TA-TTTAACTTTTTAACTGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTT------------------------GATGTACATTTAAATATTTTT--------------------------------------------TGTTTATTTTTTATTT---ATTATTATAATTTATTT
droBia1 scf7180000301585:47039-47271 - CATCA---------AA-AG----GTA----------------------A------------------T---------------GA---------------------AATAT-----------TTATTTATTTA------T--TTAT-TATT--AAAGATAGAGAAACTAGAGTTTACAAAA-C-TAGACTAACTTAGT----TGGT-AAAGCGCTGGCGGAAA--AGCCTTCGGCTTTTAAGGTTAATGATAAG-AAGTCTATTAGTT----------TAATTACAT---------------------------------------------------------------ATTGTT------------------------TGTTGTATTTAGGCAACATAGTTG-GTAAA------------------------------------------TTT---------------------------------TATTTACGTCCATTTTTGGTATTTTTAAATTTTGTGGTAT
droTak1 scf7180000413614:988-1192 - TGTA----------------------------------------------------------------------------------------------------------------------ATATTATT------ATTA--TTAT-TATT--AAAGATAGAGA------AGTTTACAAAA-C-TAGACTAACTTAGT----TGGT-AAAGCGCTGGCAGCAA--GGCCTTCGGCTTTTAAGGTTAACGATATT-AGGTCTAT----T----------TAATTACAT---------------------------------------------------------------GTTGTT------------------------CGTTGCATTTAGGCTATTTAGTTG-GTAAA------------------------------------------TTT---------------------------------TATTTATGTACATTTTGTGT-ATTTTAAATTTTGTGGTAT
droEug1 scf7180000408918:4360-4563 - TATTT---------TA--------------------------------------------------------------------------------------------TTTT------TA-TTTATTT-TTTA------T-TTA-TTTATA--ATAGATAGAAC------AGTTTACAAAA-C-TAAGATAACTTAGA----TAGT-ATAGCGCTGGCTGCAT--GGCCTATGGCTATATTGGTT-------------------------------------------------------------TACAATTTTACTGTA-----------TTTTAATCTAAT---------------ATCGAGTAATTGGC---------------------TAG-------------TGCATTGTTGTGTTTGTT--A------------------------G-AATCTTTA------------------T-----------------------T-TTTTTTAGTTTTGTGGTAT
dm3 chr3RHet:2291332-2291562 + AAACC---------GA----------------------GGATC-----AAAAAACA-ATAACAA-----------------CAAA---------------------AATAA-----------ATATTTATTTA------T--TTAT-TATG--ACAAAAAGAAT------ATCTTACAAAA-C-TAGACTAACCTAAA----TAGT-AGAGCACTGGCTACAG--GGCCTACAGCTATTT-GATT-------------------------------------------------------------TACAATGGTATTGTA-----------TCTTAATCTAGTTA--AT---------AT---CCAATTGGC---------------------TAAATAATTGA-----TGT--------GTTTGTAATGTACATTTGCCT-TTTTG-------------------------------------------------------------TTTTCAGATTTTGTGGT--
droSim2 node_59901:1741-1962 + TACAT------T--AGTAGTTG----------------------------------------------------------GGGAT---------------------AGTAA-----------ATATTTATTTA------T--TTAT-TATG--ATAGAAAGAAT------AGTTTACAAAA-C-TAGACTAACTTAGA----TAGT-ATAGCATTGGCTACGG--GGCTTACAGCTATATTGCTT-------------------------------------------------------------TACAATGTTAGTATA-----------TCTTAATTTAGTTA--AT---------AT---ATAATTTGC---------------------TAACTAGTTGC-----TGTCTT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGTAT
droSec2 scaffold_398:17070-17324 - ATTGC---------TA-----AGGTGAACACAAAATTTACTTC-----ATAATAATATTAACAA-TAT------------CG-AA---------------------TTTAT-----------TTATTTATTTA------T--TTAT-TATG--ATAGATAGAAT------AGTTTACAAAA-C-TAGACTAACTTAGA----TAGT-ATAGCATTAGCTACGG--GGCTTACAGCTATATTTATT-------------------------------------------------------------TACAATGTTATTATA-----------TCTTAATTTAGTTA--AT---------AT---CTAATTTGG---------------------TAACTAATTGC-----TGGCTT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTATATCTTGTGGTAT
droYak3 v2_chrUn_3870:9681-9887 + AGGCC---------TA-TA----TTA----------------------T------------------T-----------------------------------A-----GT----------ATTATTATT------ATTA--TTAT-TATA--ATGGATAGAGC------AGTTTACAAAA-C-TAAACTAAATTAAG----TAAT-ATAGCACTAGCTGCAG--GGCCTATGGCTATGTTGGTT-------------------------------------------------------------TACAATTTTTATTTATTTATTATTTTTTTTAATCTAATTA--AT---------GG---CTAATTGGC---------------------AAAATGA--------------------------------CATTTGTTT-------------------T--------------------------T-----------------TT-TTTTTTAATTTGGTGGTAT
droEre2 scaffold_4690:18571203-18571388 + CAGCT---------TT----------------------------------------------GGTTTT------------GCAAT---------------------GTTTT-AGGA-CAA-TTTAATT--------TTTATTTG-TTTAAA--GTGGATAGAGT------AGTGTACAAAA-C-TAACCCAACTTAAT----TATT-ATAGCGCAGG-TGCAG--GGCCTATGTATCTTAATCTTAATCATATT-GG-----------------------------------------------------------------------------------------------------------GTAGTGTGC---------------------TAAATTATT--------------------------TGTACTTT---------------------------------------------------T-----------------AT-TTTTTAGATTTTATGGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GAAG---GCATTAC-----TAGGTAGCGCACAAGCCCCAGTTC-----AAGGTACA-GCAACAGGTGT------------GTAAT---------------------ATTGT-----------ATATTTATTTA------T--TTATTTAT---ATAGAAAGA--TGTTAGAGT---TAAAA-C-TAATCTAGCTTATT----TAATGATAGCGCTGGTTACTAT-GACCTTCGGCTATGTTGCT-----------------ATT--------------ATGTTACATTATGCTT--ATTA--------------------------------------TTTTAT---------------ATTTATT-ATA---TGTGAGATGT--------------------------------------ATTACAT--G------------------------G-GTTTTATA------------------TTA-----------------------GAGTTAGATTAATGGATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGT................................................................................................................................................................................................................................................................................................25611.006606220100100
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATG.................................................................................................................................................................................................................................................................................................2465.503303020100000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTTG..............................................................................................................................................................................................................................................................................................2364.832902710001000
................................................................................................................................................................................................................TAGCGCTGGTTACTAT-GACCTTCGG......................................................................................................................................................................................................................................................................................................2513.0030210000000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTTGC.............................................................................................................................................................................................................................................................................................2412.0020110000000
.........................................................................................................................................................................................................................TTACTAT-GACCTTCGGCTATGTTG..............................................................................................................................................................................................................................................................................................2461.5090900000000
...........................................................................................................................................................................................................................ACTAT-GACCTTCGGCTATGTTG..............................................................................................................................................................................................................................................................................................2261.1770700000000
..............................................................................................................................................................................................................GATAGCGCTGGTTACTAT-GACCTTCGGC.....................................................................................................................................................................................................................................................................................................2811.0010100000000
...........................GCACAAGCCCCAGTTC-----AAGGTACA-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTA...................................................................................................................................................................................................................................................................................................2271.0070400000300
.....................................................................................................................................................................................................................CTGGTTACTAT-GACCTTCGGC.....................................................................................................................................................................................................................................................................................................2170.8660600000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA------------------TTA-----------------------GAGTTAGATTAATGGATA.2570.8660000000600
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTT...............................................................................................................................................................................................................................................................................................2260.8350500000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTTG..............................................................................................................................................................................................................................................................................................2760.8350500000000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATG.................................................................................................................................................................................................................................................................................................2060.8350500000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGC.....................................................................................................................................................................................................................................................................................................2070.7150500000000
.......................................................................................................................................................................................................................GGTTACTAT-GACCTTCGGCTATGT................................................................................................................................................................................................................................................................................................2460.6740400000000
.....................................................................................................................................................................................................................CTGGTTACTAT-GACCTTCGGCTATGT................................................................................................................................................................................................................................................................................................2660.6740310000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTT...............................................................................................................................................................................................................................................................................................2660.5030300000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTA...............................................................................................................................................................................................................................................................................................2660.5030300000000
.......................................................................................................................................................................................................................GGTTACTAT-GACCTTCGGCTATG.................................................................................................................................................................................................................................................................................................2360.5030300000000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGT................................................................................................................................................................................................................................................................................................2160.5030300000000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTTGA.............................................................................................................................................................................................................................................................................................2460.5030100000200
........................................................................................................................................................................................................................GTTACTAT-GACCTTCGGC.....................................................................................................................................................................................................................................................................................................1870.4330210000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGC................................................................................................................................................................................................................................................................................................2560.3320020000000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTA...............................................................................................................................................................................................................................................................................................2260.3320200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------TTA-----------------------GAGTTAGATTAATGGATA.2370.2920200000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTAT..................................................................................................................................................................................................................................................................................................2370.2920200000000
.......................................................................................................................................................................................................................GGTTACTAT-GACCTTCGGCTA...................................................................................................................................................................................................................................................................................................2170.2920200000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCT....................................................................................................................................................................................................................................................................................................2170.2920200000000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTTT..............................................................................................................................................................................................................................................................................................2360.1710100000000
...........................................................................................................................................................................................................................ACTAT-GACCTTCGGCTATGT................................................................................................................................................................................................................................................................................................2060.1710100000000
.........................................................................................................................................................................................................................TTACTAT-GACCTTCGGCTATGTC...............................................................................................................................................................................................................................................................................................2360.1710010000000
.......................................................................................................................................................................................................................GGTTACTAT-GACCTTCGGCTATGTT...............................................................................................................................................................................................................................................................................................2560.1710100000000
...........................................................................................................................................................................................................................ACTAT-GACCTTCGGCTATG.................................................................................................................................................................................................................................................................................................1960.1710100000000
.....................................................................................................................................................................................................................CTGGTTACTAT-GACCTTCGGCTATG.................................................................................................................................................................................................................................................................................................2560.1710100000000
.......................................................................................................................................................................................................................GGTTACTAT-GACCTTCGGCTAT..................................................................................................................................................................................................................................................................................................2270.1410100000000
............................................................................................................................................................................................................................CTAT-GACCTTCGGCTATGTTG..............................................................................................................................................................................................................................................................................................2170.1410100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-----------------------GAGTTAGATTAATGGATA.2170.1410000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA------------------TTA-----------------------GAGTTAGATTAATGGATAC2670.1410000000100
........................................................................................................................................................................................................................GTTACTAT-GACCTTCGGCTA...................................................................................................................................................................................................................................................................................................2070.1410100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA------------------TTA-----------------------GAGTTAGATTAATGG....2170.1410000001000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTAA..............................................................................................................................................................................................................................................................................................2770.1410100000000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTAT..................................................................................................................................................................................................................................................................................................1970.1410010000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTAC..................................................................................................................................................................................................................................................................................................2370.1410100000000
.....................................................................................................................................................................................................................CTGGTTACTAT-GACCTTCGGCAC...................................................................................................................................................................................................................................................................................................2370.1410100000000
.....................................................................................................................................................................................................................CTGGTTACTAT-GACCTTCGGCTAT..................................................................................................................................................................................................................................................................................................2470.1410100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------GAGTTAGATTAATGGATA.2070.1410100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATA------------------TTA-----------------------GAGTTAGATTAATGGA...2570.1410100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA------------------TTA-----------------------GAGTTAGATTAATGG....2270.1410100000000
.......................................................................................................................................................................................................................GGTTACTAT-GACCTTCGGC.....................................................................................................................................................................................................................................................................................................1970.1410100000000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGG......................................................................................................................................................................................................................................................................................................1970.1410100000000
.......................................................................................................................................................................................................................GGTTACTAT-GACCTTCGGCTATGA................................................................................................................................................................................................................................................................................................2470.1410100000000
...........................................................................................................................................................................................................................ACTAT-GACCTTCGGCTATGTTA..............................................................................................................................................................................................................................................................................................2270.1410100000000
.............................................................................................................................................................................................................................TAT-GACCTTCGGCTATGTT...............................................................................................................................................................................................................................................................................................1980.1310100000000
........................................................................................................................................................................................................................GTTACTAT-GACCTTCGGCTATGTTAA.............................................................................................................................................................................................................................................................................................2680.1310100000000
droPer2
GAAG---GCATTAC-----TAGGTAGCGCACAAGCCCCAGTTC-----AAGGTACA-GCAACAGGTGT------------GTAAT---------------------ATTGT-----------ATATTTATTTA------T--TTATTTAT---ATAGAAAGA--TGTTAGAGT---TAAAA-C-TAATCTAGCTTATT----TAATGATAGCGCTGGTTACTAT-GACCTTCGGCTATGTTGCT-----------------ATT--------------ATGTTACATTATGCTT--ATTA--------------------------------------TTTTAT---------------ATTTATT-ATA---TGTGAGATGT--------------------------------------ATTACAT--G------------------------G-GTTTTATA------------------TTA-----------------------GAGTTAGATTAATGGATATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGT................................................................................................................................................................................................................................................................................................2568.83530512000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTTG..............................................................................................................................................................................................................................................................................................2761.509090000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATG.................................................................................................................................................................................................................................................................................................2461.338080000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTA...............................................................................................................................................................................................................................................................................................2660.835050000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTAT..................................................................................................................................................................................................................................................................................................2370.574040000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTTG..............................................................................................................................................................................................................................................................................................2360.503030000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTA...................................................................................................................................................................................................................................................................................................2270.433030000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTT...............................................................................................................................................................................................................................................................................................2660.332020000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTAA..............................................................................................................................................................................................................................................................................................27100.303030000
.........................................................................................................................................................................................................................TTACTAT-GACCTTCGGCT....................................................................................................................................................................................................................................................................................................1870.292200000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCTATGTAAA.............................................................................................................................................................................................................................................................................................28110.182020000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATGTTGG.............................................................................................................................................................................................................................................................................................2460.171010000
..........................................................................................................................................................................................................................TACTAT-GACCTTCGGCTATG.................................................................................................................................................................................................................................................................................................2060.171001000
.....................................................................................................................................................................................................................CTGGTTACTAT-GACCTTCGGC.....................................................................................................................................................................................................................................................................................................2170.141010000
........................................................................................................................................................................................................................GTTACTAT-GACCTTCGGCT....................................................................................................................................................................................................................................................................................................1970.141100000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGC.....................................................................................................................................................................................................................................................................................................2070.141010000
......................................................................................................................................................................................................................TGGTTACTAT-GACCTTCGGCT....................................................................................................................................................................................................................................................................................................2170.141010000
droWil2
GCCCC---------AG-------------------------TGAAATCACGACAC---------------------------AAT---------------------AATTT-ATGTATAT-TTTATTTATTT----------TA-TTTATAATAAAGTTAATAA------TAAT--TAAAA-TTATTACTAGCTTATT----AACT-AAAGCGCTGGCGGCTAA-GGCGTTCGGCTTGGTATTTACA-TACATTTATATTTAC----AAAATTGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATTT----------------ACATATTTAGATATTTACATATTA-----------------------ACATACTTATAATTACAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................TATT----AACT-AAAGCGCTGGCGGCTAA-G..............................................................................................................................................................................................................................................................................................................2633.671109020
..................................................................................................................................................................................................TATT----AACT-AAAGCGCTGGCGGCTAA-...............................................................................................................................................................................................................................................................................................................2532.33705020
.........................................TGAAATCACGACAC---------------------------AAT---------------------AATTT-ATG.............................................................................................................................................................................................................................................................................................................................................................................................................................25202.0541041000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------ACATATTTAGATATTTACATAT............................................2432.00601050
.............................................................................................................................................................................................TAGCTTATT----AACT-AAAGCGCTGGCGGC...................................................................................................................................................................................................................................................................................................................2731.67504010
......................................................................................................................................................................................................................................TCGGCTTGGTATTTACA-TACATTTATATT............................................................................................................................................................................................................................................................................2921.00202000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTATTT----------------ACATATTTAGATATT...................................................2541.00403010
.....................................................................................................................................................................................................T----AACT-AAAGCGCTGGCGGCTAA-GG.............................................................................................................................................................................................................................................................................................................2431.00303000
..........................................................................................................................................................................................TACTAGCTTATT----AACT-AAAGCGCTGG.......................................................................................................................................................................................................................................................................................................................2630.67201010
.....................................................................................................................................................................................................T----AACT-AAAGCGCTGGCGGCTAA-GGC............................................................................................................................................................................................................................................................................................................2530.67202000
..................................................................................................................................................................................................TATT----AACT-AAAGCGCTGGCGGCTA.................................................................................................................................................................................................................................................................................................................2430.67201010
..................................................................................................................................................................................................TATT----AACT-AAAGCGCTGGCGGCTAA-GGC............................................................................................................................................................................................................................................................................................................2830.67201010
..................................................................................................................................................................................................TATT----AACT-AAAGCGCTGGCGGCTAA-GG.............................................................................................................................................................................................................................................................................................................2730.67202000
......................................................................................................................................................................................................................................................................................TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATTT----------------ACA...............................................................2840.50202000
.......................................................................................................................................................................................TATTACTAGCTTATT----AACT-AAAGCGC..........................................................................................................................................................................................................................................................................................................................2640.50201010
...................................................................................................................................................................................................................................................TACA-TACATTTATATTTAC----AAAATTGCA--..........................................................................................................................................................................................................................................................2820.50101000
......................................................................................................................................................................................................................................................................................TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATT...................................................................................2440.50201010
...................................................................................................................................................................................................................................................TACA-TACATTTATATTTAC----AAAATTGC.............................................................................................................................................................................................................................................................2720.50101000
................................................................................................................................................................................................................................................................................TGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATT...................................................................................2840.50201010
...................................................................................................................................................................................................................................................................TTAC----AAAATTGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATT...........................................................................................2920.50101000
....................................................................................................................................................................................................TT----AACT-AAAGCGCTGGCGGCTAA-G..............................................................................................................................................................................................................................................................................................................2430.33100010
.................................................................................................................................................................................................TTATT----AACT-AAAGCGCTGGCGGCTAA-GG.............................................................................................................................................................................................................................................................................................................2830.33101000
..........................................................................................................................................................................................TACTAGCTTATT----AACT-AAAGCGCTGGC......................................................................................................................................................................................................................................................................................................................2730.33101000
..................................................................................................................................................................................................TATT----AACT-AAAGCGCTGG.......................................................................................................................................................................................................................................................................................................................1830.33100010
...................................................................................................................................................................................................ATT----AACT-AAAGCGCTGGCGGCTAA-...............................................................................................................................................................................................................................................................................................................2430.33101000
.............................................................................................................................................................................................TAGCTTATT----AACT-AAAGCGCTGGCGG....................................................................................................................................................................................................................................................................................................................2630.33101000
.................................................................................................................................................................................................TTATT----AACT-AAAGCGCTGGCGGCTAA-...............................................................................................................................................................................................................................................................................................................2630.33101000
.........................................TGAAATCACGACAC---------------------------AAT---------------------AATTT-ATGT............................................................................................................................................................................................................................................................................................................................................................................................................................26200.30606000
.........................................TGAAATCACGACAC---------------------------AAT---------------------AATTT-ATGTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................28200.30605010
.....................................................................................................................................................................................................................................TTCGGCTTGGTATTTACA-TACATTTA................................................................................................................................................................................................................................................................................2640.25101000
....................................................................................................................................................................................................................................................................TAC----AAAATTGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATT...........................................................................................2840.25101000
................................................................................................................................................................................................................................................................................TGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGT......................................................................................2540.25100010
..........................................................................................................................................................................................................................................................................................TA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATTT----------------ACATATT...........................................................2840.25101000
.....................................................................................................................................................................................................................................TTCGGCTTGGTATTTACA-TACATTTATAT.............................................................................................................................................................................................................................................................................2940.25101000
....................................................................................................................................................................................................................................................................TAC----AAAATTGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACAT............................................................................................2740.25101000
......................................................................................................................................................................................................................................................................................TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGT......................................................................................2140.25101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTT----------------ACATATTTAGATAT....................................................2140.25101000
...............................................................................................................................................................................................................................................................................TTGCA--TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATT...................................................................................2940.25101000
......................................................................................................................................................................................................................................................................................TATTTA------------------------------------------------------C-----------------------------------------C------------------------------------------------TACACATTTACGTATTT----------------A.................................................................2640.25101000
.......................................................................................................................................................................................................................................CGGCTTGGTATTTACA-TACATTTATA..............................................................................................................................................................................................................................................................................2640.25101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATATTA-----------------------ACATACTTATAATTACAA.2850.20101000
..CCC---------AG-------------------------TGAAATCACGACAC---------------------------AAT---------------------AATTT-A...............................................................................................................................................................................................................................................................................................................................................................................................................................28200.10202000
..........................................GAAATCACGACAC---------------------------AAT---------------------AATTT-ATGT............................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.............................................ATCACGACAC---------------------------AAT---------------------AATTT-ATGTATAT-.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
droVir3
ACACT---------AA---------------------------------------------CACAGGC------------GCAGG---------------------ATGGC-----------TTATTTATTTA------T--TT------A--ATAGTTAGGTA------TAATTAAAAAT-T-AAGACTAACTTAT-----TTCT-AAAGCACTGGCTGCGGGGGGGCTTCGGCTTGCT-GCT-----------------AT------------------------------------ACTTATTTACATTTTTTGTATA---------------------------------------CATATT-ACA---C----------------------------------------------------TT--ACATATTTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGCGATATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGCGA...2761.509003000000001000000000000011000000000201000000000000000000000000
....................................................................................................................................................................................T-T-AAGACTAACTTAT-----TTCT-AAAGCAC..........................................................................................................................................................................................................................................................................................................................2651.005005000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCA.............2671.007000000000000000000000001010300000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGC.....2591.009102100000000010000000000000000000000004000000000000000000000000
......................................................................................................................................................................................T-AAGACTAACTTAT-----TTCT-AAAGCAC..........................................................................................................................................................................................................................................................................................................................2551.005004000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGC.....2670.866003000000001010000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGC.....2770.866003000000003000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TT-ACA---C----------------------------------------------------TT--ACATATTTACATA----------------TTTACA------------------T............................................2840.753000000000000000000000000001000000002000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TT--ACATATTTACATA----------------TTTACA------------------TTG-----------------GGT-.....................2740.753000000000000000000000000020000000010000000000000000000000000000
......................................................................................................................................................................................T-AAGACTAACTTAT-----TTCT-AAAGCACTGGC......................................................................................................................................................................................................................................................................................................................2950.603002100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGG......2570.574004000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGTC..............2570.574000000000000000000000001020000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA------------------TTG-----------------GGT-T-AGGTCATAGAAGG......2490.444002000000001000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAAG.......2570.433002010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................T-T-AAGACTAACTTAT-----TTCT-AAAGCACT.........................................................................................................................................................................................................................................................................................................................2750.402002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGT...............2730.331001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAA........2670.292000000000000000000000000000010001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGT...............2470.292000000000000000000000001000000000000000000010000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGG......2670.292000000000000000000000000001000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACA------------------TTG-----------------GGT-T-AGGTC..............1870.292000020000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TT-ACA---C----------------------------------------------------TT--ACATATTTACATA----------------TTTA.................................................................2540.251000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACATATTTACATA----------------TTTACA------------------TTG-----------------GGT-.....................2640.251001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TT-ACA---C----------------------------------------------------TT--ACATATTTACATA----------------TTTACA------------------.............................................2740.251000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TT-ACA---C----------------------------------------------------TT--ACATATTTACATA----------------TTTAC................................................................2640.251000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................T-ACA---C----------------------------------------------------TT--ACATATTTACATA----------------TTTACA------------------TT...........................................2840.251000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-----------------GGT-T-AGGTCATAGAAGGC.....2190.222001000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCA.............2750.201000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGCG....2660.171000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------TTG-----------------GGT-T-AGGTCATAGAAGGCGATA.2760.171000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T-AGGTCATAGAAGGCGA...1860.171001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACATA----------------TTTACA------------------TTG-----------------GG.......................1960.171000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................TAACTTAT-----TTCT-AAAGCACT.........................................................................................................................................................................................................................................................................................................................2060.171001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGCGA...2860.171000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAAGGCG....2860.171001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCATAGA.........2570.141000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCATAGAAG.......2770.141000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATA----------------TTTACA------------------TTG-----------------GGT-T-AGGTCAT............2770.141000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTTACATTTTTTGTATA---------------------------------------CATATT-ACA---C----------------------------------------------------T.....................................................................................................2870.141001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATA----------------TTTACA------------------TTG-----------------GGT-.....................1980.131000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................T-GCT-----------------AT------------------------------------ACTTATTTACATTTTTTGTA.................................................................................................................................................................................................................2680.131000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................T-GCT-----------------AT------------------------------------ACTTATTTACATTTTTTGT..................................................................................................................................................................................................................2580.131000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................T-GCT-----------------AT------------------------------------ACTTATTTACATTTTTTG...................................................................................................................................................................................................................2480.131001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA------------------TTG-----------------GGT-T-AGGTCATAGAA........2290.111000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA------------------TTG-----------------GGT-T-AGGTCATAGA.........2190.111000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------TTG-----------------GGT-T-AGGTCATAGAAGG......2390.111001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TAGGTA------TAATTAAAAAT-T-AAGACT..................................................................................................................................................................................................................................................................................................................................................24100.101000000000000000000000000000100000000000000000000000000000000000
droMoj3
GCAAA---------A------------------GCATCAGATA-----A-AGTACA-GATAAAGTTAG------------ATAACAAGGTAATAGAAGCATTCAATAAAAT-----------TTATTTATTTA------T--TTAT-C-TT--AGAGTTAGAGT------TAATTA--AAA-TTAAAACTAACTTAAAT---TTTT-AAAGCGCTGGCTGCATG-GGCCTTCGGCTTATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TTTTAACATATTT---------------------------------------------------------------------------------------------ACATATTTTACTTA---TAATGGG-TT------------------TTAAA---------------------GGTTTATAGGATGTGGTAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGCTGGC......................................................................................................................................................................................................................................................................................................................25820.1316167700843
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------....................................................................................................................................................................................................2686.505238100121
.............................................................................................................................................................................................................................................ATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------....................................................................................................................................................................................................2582.38191400050
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------................................................................................................................................................................................................................2582.13171600010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-TT------------------TTAAA---------------------GGTTTATAGGATGTGG...2771.86131200010
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGCTGG.......................................................................................................................................................................................................................................................................................................................2491.4413800032
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------T...................................................................................................................................................................................................2781.139900000
.............................................................................................................................................................................................................................................ATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------T...................................................................................................................................................................................................2681.008500030
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGCTGGCTGC...................................................................................................................................................................................................................................................................................................................2871.007200050
..........................................................ATAAAGTTAG------------ATAACAAGGTAATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................ATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TTT.................................................................................................................................................................................................2880.887600010
..............................................................................................................................................................................................AACTTAAAT---TTTT-AAAGCGCTGGC......................................................................................................................................................................................................................................................................................................................2480.887700000
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TTT.................................................................................................................................................................................................2980.887600010
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGCTGGCT.....................................................................................................................................................................................................................................................................................................................2680.756400020
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TT..................................................................................................................................................................................................2880.756600000
...............................................................................................................................................................................................................................................................................................................................................TAACATATTT---------------------------------------------------------------------------------------------ACATATTTTACTTA---TA.......................................................................2680.635400010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------TTAAA---------------------GGTTTATAGGATGTGGTA.2570.574400000
.................................................................................................................................................................................................TTAAAT---TTTT-AAAGCGCTGGC......................................................................................................................................................................................................................................................................................................................2180.383100020
.............................................................................................................................................................................................................................................ATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------................................................................................................................................................................................................................2480.383300000
..............................................................................................................................................................................................................................................TCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TTT.................................................................................................................................................................................................2780.383300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------TTAAA---------------------GGTTTATAGGATGTGGTAG2670.292200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA---------------------GGTTTATAGGATGTGGT..2170.292000002
..............................................................................................................................................................................................................................................TCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------....................................................................................................................................................................................................2480.252200000
.............................................................................................................................................................................................................................................ATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TT..................................................................................................................................................................................................2780.252200000
...........................................................................................................................................................................................................................................TTATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------TT..................................................................................................................................................................................................2980.252200000
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------C-----------....................................................................................................................................................................................................2680.252100010
..........................................................................................................................................................................................................TTTT-AAAGCGCTGGCTGCATG-GGCC...........................................................................................................................................................................................................................................................................................................2580.252000020
.............................................................................................................................................................................................................................................ATCGGATTAAGAATATT-TTAAC-A..........................................................................................................................................................................................................................................................................2380.252200000
...........................................................................................................................................................................................................................................TTATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------....................................................................................................................................................................................................2780.252000020
..............................................................................................................................................................................................AACTTAAAT---TTTT-AAAGCGCTGG.......................................................................................................................................................................................................................................................................................................................2390.222200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-TT------------------TTAAA---------------------GGTTTATAGGATG......2470.141100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTA---TAATGGG-TT------------------TTAAA---------------------GGTTTAT............2670.141100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-TT------------------TTAAA---------------------GGTTTATAGGATGT.....2570.141100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTTA---TAATGGG-TT------------------TTAAA---------------------GG.................2570.141100000
................................................................................................................................................................................................CTTAAAT---TTTT-AAAGCGCTGGCTGCA..................................................................................................................................................................................................................................................................................................................2670.141000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-TT------------------TTAAA---------------------GGTTTATAGGATGTG....2670.141100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGG-TT------------------TTAAA---------------------GGTTTATAGGATG......2770.141100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------TTAAA---------------------GGTTTATAGGATGTGGTA.2470.141100000
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGCTGGCTGCA..................................................................................................................................................................................................................................................................................................................2970.141100000
.........................................................................................................................................................................................................................................GCTTATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------C-----------....................................................................................................................................................................................................2980.131100000
...............................................................................................................................................................................................................................................................................................................................................TAACATATTT---------------------------------------------------------------------------------------------ACATATTTTACTTA---TAATG....................................................................2980.131100000
..........................................................................................................................................................................................................................TGCATG-GGCCTTCGGCTTATCGGATTA..........................................................................................................................................................................................................................................................................................2780.131100000
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------A...................................................................................................................................................................................................2780.131100000
....................................................................................................................................................................................................................................................TAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------....................................................................................................................................................................................................1880.131000010
...............................................................................................................................................................................................................................................................................................................................................TAACATATTT---------------------------------------------------------------------------------------------ACATATTTTACTTA---TAA......................................................................2780.131100000
..............................................................................................................................................................................................AACTTAAAT---TTTT-AAAGCGCTGGCT.....................................................................................................................................................................................................................................................................................................................2580.131100000
............................................................................................................................................................................................CTAACTTAAAT---TTTT-AAAGCGCTGGC......................................................................................................................................................................................................................................................................................................................2680.131000010
.........................................................................................................................................................................................................................................GCTTATCGGATTAAGAATATT-TTAAC-A..........................................................................................................................................................................................................................................................................2780.131100000
....................................................................................................................................................................................................................................................................................................................................................TATTT---------------------------------------------------------------------------------------------ACATATTTTACTTA---TAATGGG-T................................................................2780.131100000
.............................................................................................................................................................................................................................................................................................................................................TTTAACATATTT---------------------------------------------------------------------------------------------ACATATTTTACTTA---.........................................................................2680.131100000
............................................................................................................................................................................................................................................TATCGGATTAAGAATATT-TTAAC-AT---------------------------------------------------------T-----------C...................................................................................................................................................................................................2780.131100000
..........................................................................................................................................................................................................TTTT-AAAGCGCTGGCTGC...................................................................................................................................................................................................................................................................................................................1880.131100000
...............................................................................................................................................................................................ACTTAAAT---TTTT-AAAGCGCTGGC......................................................................................................................................................................................................................................................................................................................2380.131000010
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGCTGGCTG....................................................................................................................................................................................................................................................................................................................2780.131100000
.................................................................................................................................................................................................TTAAAT---TTTT-AAAGCGCTGG.......................................................................................................................................................................................................................................................................................................................2090.111100000
.....................................................................................................................................................................................................AT---TTTT-AAAGCGCTGGCT.....................................................................................................................................................................................................................................................................................................................1890.111100000
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGCT.........................................................................................................................................................................................................................................................................................................................2290.111100000
...............................................................................................................................................................................................ACTTAAAT---TTTT-AAAGCGCTGAT......................................................................................................................................................................................................................................................................................................................2390.111000010
.............................................................................................................................................................................................TAACTTAAAT---TTTT-AAAGCGC..........................................................................................................................................................................................................................................................................................................................2190.111000010
droGri2
CAAG---GCGCTCC-----TCGGTGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AGTGCATGCGCTAC-----AA----------------------------AAGTACA-ACAAAGCGCATGCGAATCTGGGAGAAAC---------------------AAAGA-----------ATATTCATTTA------T--TTAT-TATT--AAAGATAGAGA------AGTTTACAAAA-C-TAGACTAACTTAGT----TGGT-AAAGCGCTGGCGGCAA--GGCCTTCGGCTTTTAAGGTTAATGATATTTAAGTCTAT----TACATAGTA--TGATTACAT---------------------------------------------------------------ATTGTT------------------------TTTTGTATTTAGGCTACTTAGTTG-GTAGA------------------------------------------TTT---------------------------------TATTTATGTACATTTTGAGT--------------ATTTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................ATCTGGGAGAAAC---------------------AAAGA-----------ATATTCATT.............................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..............................................................................................................................................................................TACAAAA-C-TAGACTAACTTAGT----TGGT-.................................................................................................................................................................................................................................................................................................................................2690.898142010
..............................................................................................................................................................................TACAAAA-C-TAGACTAACTTAGT----TGG...................................................................................................................................................................................................................................................................................................................................2590.333210000
.............................................................................................................................................................................................................T-AAAGCGCTGGCGGCAA--GGCCTTCG.......................................................................................................................................................................................................................................................................................................2550.201100000
.............................................................................................................................................................................................................T-AAAGCGCTGGCGGCAA--GGCCTTC........................................................................................................................................................................................................................................................................................................2460.171100000
......................................................................................................................................................T--AAAGATAGAGA------AGTTTACAAAA-C-TAGA....................................................................................................................................................................................................................................................................................................................................................2890.111010000
.........................................................................................................................................................AAAGATAGAGA------AGTTTACAAAA-C-TAGAC...................................................................................................................................................................................................................................................................................................................................................28100.101010000
...........TAC-----AA----------------------------AAGTACA-ACAAAGCGCATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
...................................................GTACA-ACAAAGCGCATGCGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.................................................AAGTACA-ACAAAGCGCATGCGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
..............................................................GCGCATGCGAATCTGGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...........TAC-----AA----------------------------AAGTACA-ACAAAGCGCATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..........CTAC-----AA----------------------------AAGTACA-ACAAAGCGCATGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
droBip1
AATTG-----------------------------------------------------------ATTT------------TTATT---------------------ATTTT-ATAT-CAT-TTTATTATT------ATTA--TTAT-TATT--AAAGGTAGAAA------AGTTTACAAAA-C-TAGACTAGCTTAA-----TGAT-ATAGCGCTGGTTACTGT-GGCCTTCGGCTATGTGAGTTATTGGTGCTTAAGTCTTAAGG---GATGATATATATATACA----------------------------TGTTGTG-----------TCTTAACTTAAT---------------ATTTAACTGTTATC---------------------TATGT--------------------------GTTCTGTACATT--------------------ATTTT-TC------------------TTAAA---------------------ATTAAGCAACTAGTCTTGTSizeHit CountTotal NormTotal
No Reads
droKik1
AACAA-----------------------------------------------------------TTTT------------GT--------------------CGATAATATT------TA-TTTATTTATTTA------T--TTAT-TATT--AAAGATAGAGA------AGTTTACAAAA-C-TAAACTAACTTAGT----TGGT-AAAGCGCTGGCAACAG--GGCCTTCGGCTTTTAAGATTCATGATATT-ATATATATTGTTT----------TAATTACAT------------------------------------------------------------------------AT---------------TTGACATTGTAGTTTGGCTATATAGTTG-GTA----------------------------------------------------------------------------------------------------------ATTTTTATTTATATSizeHit CountTotal NormTotal
No Reads
droFic1
CCCAA----------------------------------ATTC-----ATATGA--------------------------AAAAC---------------------AATAT-ATATACATTATTATTATT------ATTA--TTAT-TATA--AAAGATAGAAA------AGTTTACAAAA-C-TAAGCTAACTTATG----TGGT-ACAGCACTGGCAACGG--GGCCTTAGGCTATGTGGGATTTGGATGGT-GTACA---------------------------------------------------------TGTT-----------TCTTAACCTAATAATCATATTATTATTATTT--------------------------------------------------CTT---------ATGTCGTACAATTAATTAATTAG----TTT---------------------------------T-----------------TT-TTTTTTAATTTTGTGGTATSizeHit CountTotal NormTotal
No Reads
droEle1
TTAT----------------------------------------------------------------------------------------------------------------------TTATTTATTTA------T--TTTTTTATACAATGCTAACTAA-----TAGT---TAAAACTAGGAGTTAACAAAAATTGTGGTT-AGAGCTTTAGCTGCAAGAGGCCTTCAGCTCTGAGGGTG-----------------GT--------------TTAGTATTTTATACTAGCATTA--------------------------------------TTTAATT--------------ATTTATT-TTA---TATTA-TTAT--------------------------------------TCTACTT--A------------------------TGGTTTTATA------------------T-ATA---------------------TATATACATTTTCTGATGASizeHit CountTotal NormTotal
No Reads
droRho1
ATATT---------GT--------------------------------------------------------------------------------------TGCTTATTTT------TA-TTTAACTTTTTAACTGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTT------------------------GATGTACATTTAAATATTTTT--------------------------------------------TGTTTATTTTTTATTT---ATTATTATAATTTATTTSizeHit CountTotal NormTotal
No Reads
droBia1
CATCA---------AA-AG----GTA----------------------A------------------T---------------GA---------------------AATAT-----------TTATTTATTTA------T--TTAT-TATT--AAAGATAGAGAAACTAGAGTTTACAAAA-C-TAGACTAACTTAGT----TGGT-AAAGCGCTGGCGGAAA--AGCCTTCGGCTTTTAAGGTTAATGATAAG-AAGTCTATTAGTT----------TAATTACAT---------------------------------------------------------------ATTGTT------------------------TGTTGTATTTAGGCAACATAGTTG-GTAAA------------------------------------------TTT---------------------------------TATTTACGTCCATTTTTGGTATTTTTAAATTTTGTGGTATSizeHit CountTotal NormTotal
No Reads
droTak1
TGTA----------------------------------------------------------------------------------------------------------------------ATATTATT------ATTA--TTAT-TATT--AAAGATAGAGA------AGTTTACAAAA-C-TAGACTAACTTAGT----TGGT-AAAGCGCTGGCAGCAA--GGCCTTCGGCTTTTAAGGTTAACGATATT-AGGTCTAT----T----------TAATTACAT---------------------------------------------------------------GTTGTT------------------------CGTTGCATTTAGGCTATTTAGTTG-GTAAA------------------------------------------TTT---------------------------------TATTTATGTACATTTTGTGT-ATTTTAAATTTTGTGGTATSizeHit CountTotal NormTotal
No Reads
droEug1
TATTT---------TA--------------------------------------------------------------------------------------------TTTT------TA-TTTATTT-TTTA------T-TTA-TTTATA--ATAGATAGAAC------AGTTTACAAAA-C-TAAGATAACTTAGA----TAGT-ATAGCGCTGGCTGCAT--GGCCTATGGCTATATTGGTT-------------------------------------------------------------TACAATTTTACTGTA-----------TTTTAATCTAAT---------------ATCGAGTAATTGGC---------------------TAG-------------TGCATTGTTGTGTTTGTT--A------------------------G-AATCTTTA------------------T-----------------------T-TTTTTTAGTTTTGTGGTATSizeHit CountTotal NormTotal
No Reads
dm3
AAACC---------GA----------------------GGATC-----AAAAAACA-ATAACAA-----------------CAAA---------------------AATAA-----------ATATTTATTTA------T--TTAT-TATG--ACAAAAAGAAT------ATCTTACAAAA-C-TAGACTAACCTAAA----TAGT-AGAGCACTGGCTACAG--GGCCTACAGCTATTT-GATT-------------------------------------------------------------TACAATGGTATTGTA-----------TCTTAATCTAGTTA--AT---------AT---CCAATTGGC---------------------TAAATAATTGA-----TGT--------GTTTGTAATGTACATTTGCCT-TTTTG-------------------------------------------------------------TTTTCAGATTTTGTGGT--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................TAGT-AGAGCACTGGCTACAG--GGC............................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCT-TTTTG-------------------------------------------------------------TTTTCAGATTTTGTGG...2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TCTTAATCTAGTTA--AT---------AT---CCAATTGGC---------------------......................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAAATAATTGA-----TGT--------GTTTGTAATG.................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................A----TAGT-AGAGCACTGGCTACAG--GGC............................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................T---CCAATTGGC---------------------TAAATAATTGA-----TGT--------GT.........................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AA----TAGT-AGAGCACTGGCTACAG--GGC............................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CAATTGGC---------------------TAAATAATTGA-----TGT--------GTTTG......................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................ATTGA-----TGT--------GTTTGTAATGTACATT...........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GA-----TGT--------GTTTGTAATGTACATTTGCCT-T....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TAAA----TAGT-AGAGCACTGGCTA....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATTGGC---------------------TAAATAATTGA-----TGT--------...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................TTT-GATT-------------------------------------------------------------TACAATGGTATTGT................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCT-TTTTG-------------------------------------------------------------TTTTCAGATTTTGTGG...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................T-AGAGCACTGGCTACAG--GGCCTACA.......................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................ACTAACCTAAA----TAGT-AGAGCACTGGC......................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TTGGC---------------------TAAATAATTGA-----TGT--------GTTTGT.....................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATTGGC---------------------TAAATAATTGA-----TGT--------GTTTG......................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TA--AT---------AT---CCAATTGGC---------------------TAAATA................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TTGGC---------------------TAAATAATTGA-----TGT--------GTTTGTA....................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TAGT-AGAGCACTGGCTACAG--GGCCTA.........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------GTTTGTAATGTACATTTGCCT-TT...................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TA--AT---------AT---CCAATTGGC---------------------TAAATAATT.............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTTTGTAATGTACATTTGCCT-TTTTG-------------------------------------------------------------...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TAATTGA-----TGT--------GTTTGTAATGTACATT...........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TAGT-AGAGCACTGGCTACAG--GGCC...........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TT-------------------------------------------------------------TACAATGGTATTGTA-----------TC..................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TAACCTAAA----TAGT-AGAGCACTGGC......................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TAAA----TAGT-AGAGCACTGGCTACAG--GGC............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAAATAATTGA-----TGT--------GTTTGTA....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GTTA--AT---------AT---CCAATTGGC---------------------TAAATAAT..............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GA----------------------GGATC-----AAAAAACA-ATAACAA-----------------CAAA---------------------AA....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------------------------------------------------------------TTTTCAGATTTTGTGGT--2080.6350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000002100000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-------------------------------------------------------------TTTTCAGATTTTGTGGT--2170.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000
..............................................................................................................................................................................................................................................TT-GATT-------------------------------------------------------------TACAATGGTATT..................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------TTTTCAGATTTTGTGGT--1980.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................T-GATT-------------------------------------------------------------TACAATGGTATTGT................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TTGTA-----------TCTTAATCTAGTTA--AT---------AT---C...................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TT-GATT-------------------------------------------------------------TACAATGGTATA..................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TT-GATT-------------------------------------------------------------TACAATGGTATTGTA-----------A...................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TT-GATT-------------------------------------------------------------TACAATGGTATTGTA-----------....................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------------------------------------------------------------TTTTCAGATTTTGTGG...1980.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TT-------------------------------------------------------------TACAATGGTATTGTA-----------GA..................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-------------------------------------------------------------TTTTCAGATTTTGTGG...2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTG-------------------------------------------------------------TTTTCAGATTTTGTGG...2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------TTTTCAGATTTTGTGG...1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------------------------TTTTCAGATTTTGTGGT--1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TACAT------T--AGTAGTTG----------------------------------------------------------GGGAT---------------------AGTAA-----------ATATTTATTTA------T--TTAT-TATG--ATAGAAAGAAT------AGTTTACAAAA-C-TAGACTAACTTAGA----TAGT-ATAGCATTGGCTACGG--GGCTTACAGCTATATTGCTT-------------------------------------------------------------TACAATGTTAGTATA-----------TCTTAATTTAGTTA--AT---------AT---ATAATTTGC---------------------TAACTAGTTGC-----TGTCTT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................T------AGTTTACAAAA-C-TAGACTAACTTAGA----......................................................................................................................................................................................................................................................................................................................................272010.35207000000742810500000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGG...27122.83340000002512150000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGA...........2771.571100000012440000000
..........................................................................................................................................................................................................TAGT-ATAGCATTGGCTACGG--GGCTTA.........................................................................................................................................................................................................................................................................................................2631.33400000000112000000
............................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTTGC-----TGTCTT---------GTTATGTACAAT...........................................................................................2711.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATTTGC---------------------TAACTAGTTGC-----T.....................................................................................................................1921.00200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGA...........2571.00700000011230000000
..................................................................................................................................................................................................TAGA----TAGT-ATAGCATTGGCTACGG--GGC............................................................................................................................................................................................................................................................................................................2711.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGTA.25140.861200000032401020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGA...........2970.86600000012120000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTT................2580.75600006000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTA....26130.69900000001080000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTG......24130.69900000011061000000
..........................................................................................................................................................................................................TAGT-ATAGCATTGGCTACGG--GGCTT..........................................................................................................................................................................................................................................................................................................2530.67200000000020000000
...........................................................................................................................TATTTATTTA------T--TTAT-TATG--ATAGA..................................................................................................................................................................................................................................................................................................................................................................................24200.551100000001730000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGA.....25130.54700000000070000000
........................................................................................................................................................................................TAGACTAACTTAGA----TAGT-ATAGCATTGGC......................................................................................................................................................................................................................................................................................................................2920.50100000000100000000
.............................................................................................................................................................................................TAACTTAGA----TAGT-ATAGCATTGGC......................................................................................................................................................................................................................................................................................................................2420.50100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGAA....26130.46600000005010000000
........................................................................................................................................................................................TAGACTAACTTAGA----TAGT-ATAGCA...........................................................................................................................................................................................................................................................................................................................24140.43600000001230000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TT.................2480.38300030000000000000
..........................................................................................................................................................................................................TAGT-ATAGCATTGGCTACGG--GGCT...........................................................................................................................................................................................................................................................................................................2430.33100000000001000000
.....................................................................................................................................................................................................................TTGGCTACGG--GGCTTACAGCTATATT...............................................................................................................................................................................................................................................................................................2630.33100000000001000000
...................................................................................................................................................................T------AGTTTACAAAA-C-TAGACTAACTTAGA----A.....................................................................................................................................................................................................................................................................................................................................28200.30600000001320000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGT..28110.27300000003000000000
...................................................................................................................................................................T------AGTTTACAAAA-C-TAGA....................................................................................................................................................................................................................................................................................................................................................17200.25500000000320000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGT.....25130.23300100000010010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTT....26130.23300000000120000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGG...2890.22200000001010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGTAT26140.21300000000030000000
............................................................................................................................................................................TTTACAAAA-C-TAGACTAACTTAGA----......................................................................................................................................................................................................................................................................................................................................24200.20400000040000000000
.............................................................................................................................................................................TTACAAAA-C-TAGACTAACTTAGA----......................................................................................................................................................................................................................................................................................................................................23200.20400000020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGTA.29110.18200000000200000000
..........................................................................................................................................................................................................TAGT-ATAGCATTGGCTACGG--GG.............................................................................................................................................................................................................................................................................................................2260.17100000000001000000
..........................................................................................................................................................................................................TAGT-ATAGCATTGGCTACGG--GGC............................................................................................................................................................................................................................................................................................................2360.17100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTG-------------------------------------------------------------TTTTTAGATTTTGAA....22190.16300000002010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTT........22130.15200000000200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGA...........19130.15200000001100000000
..............................................................................................................................................................................TACAAAA-C-TAGACTAACTTAGA----......................................................................................................................................................................................................................................................................................................................................22200.15300000002100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGT.....2770.14100000001000000000
...............................................................................................................................................................................................................ATAGCATTGGCTACG..................................................................................................................................................................................................................................................................................................................1570.14100000000001000000
..........................................................................................................................................................................................................TAGT-ATAGCATTGGCTACGG--GCT............................................................................................................................................................................................................................................................................................................2370.14100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGA...........2670.14100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTAGAA..........2870.14100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTT..............2770.14100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------A..................2680.13100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TT.................2680.13100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TA.................2780.13100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TT.................2780.13100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTT...............2680.13100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTG-------------------------------------------------------------TTTTTAGATTTTGTGG...21160.13200000000110000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-------------------------------------------------------------TTTTTAGATTTTGTGGTA.22170.12200000000000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTG......2590.11100000001000000000
...................................................................................................................................................................T------AGTTTACAAAA-C-TAGACT..................................................................................................................................................................................................................................................................................................................................................19200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGG...26120.08100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATT.........21130.08100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTAA...27130.08100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTA.......23130.08100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTTA...27130.08100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGT...27130.08100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGTA.26140.07100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGGT..24140.07100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTG-------------------------------------------------------------TTTTTAGATTTTGTGG...23150.07100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTG-------------------------------------------------------------TTTTTAGATTTTG......20160.06100000001000000000
..............................................................................................................................................................................................AACTTAGA----TAGT-ATAGCATT.........................................................................................................................................................................................................................................................................................................................20160.06100000000001000000
...................................................................................................................................................................T------AGTTTACAAAA-C-TAGACTAACTT.............................................................................................................................................................................................................................................................................................................................................24200.05100000000010000000
...................................................................................................................................................................T------AGTTTACAAAA-C-TAGACTAACTTAG...........................................................................................................................................................................................................................................................................................................................................26200.05100010000000000000
..............................................................................................................................................................................TACAAAA-C-TAGACTAACTTAGA----T.....................................................................................................................................................................................................................................................................................................................................23200.05100000000100000000
............................................................................................................................................................................TTTACAAAA-C-TAGACTAACT..............................................................................................................................................................................................................................................................................................................................................20200.05100000000001000000
..........................................................................................................................................................................AGTTTACAAAA-C-TAGACTAACTTAGA----......................................................................................................................................................................................................................................................................................................................................26200.05100000000010000000
..........................................................................................................................................................................AGTTTACAAAA-C-TAGACTAACTTAGA----T.....................................................................................................................................................................................................................................................................................................................................27200.05100010000000000000
...................................................................................................................................................................T------AGTTTACAAAA-C-TAGACTAACT..............................................................................................................................................................................................................................................................................................................................................23200.05100000000100000000
..............................................................................................................................................................................TACAAAA-C-TAGACTAACT..............................................................................................................................................................................................................................................................................................................................................18200.05100000010000000000
droSec2
ATTGC---------TA-----AGGTGAACACAAAATTTACTTC-----ATAATAATATTAACAA-TAT------------CG-AA---------------------TTTAT-----------TTATTTATTTA------T--TTAT-TATG--ATAGATAGAAT------AGTTTACAAAA-C-TAGACTAACTTAGA----TAGT-ATAGCATTAGCTACGG--GGCTTACAGCTATATTTATT-------------------------------------------------------------TACAATGTTATTATA-----------TCTTAATTTAGTTA--AT---------AT---CTAATTTGG---------------------TAACTAATTGC-----TGGCTT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TTTTTATATCTTGTGGTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................TTAGA----TAGT-ATAGCATTAGCTACGG--...............................................................................................................................................................................................................................................................................................................25200.901817001
.....................................................................................................................................................TG--ATAGATAGAAT------AGTTTACAAAA-C-T.......................................................................................................................................................................................................................................................................................................................................................26200.751515000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGC-----TGGCTT---------GTTATGTAC..............................................................................................25200.751512030
.................................................................................................................................................................................................TTAGA----TAGT-ATAGCATTAGCTACGG--G..............................................................................................................................................................................................................................................................................................................26200.65137060
.................................................................................................................................................................................................TTAGA----TAGT-ATAGCATTAGCTACGG--GG.............................................................................................................................................................................................................................................................................................................27200.651310030
...........................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGC-----TGGCTT---------GTTATGTACAAT...........................................................................................28200.601212000
.................................................................................................................................................................................................TTAGA----TAGT-ATAGCATTAGCTACG..................................................................................................................................................................................................................................................................................................................24200.50104060
...........................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGC-----TGGCTT---------GTTATGTA...............................................................................................24200.4590081
.....................................................................................................................................................TG--ATAGATAGAAT------AGTTTACAAAA-..........................................................................................................................................................................................................................................................................................................................................................24200.4590090
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCTGTTTTG-------------------------------------------------------------TTTTTATATCTTG......2650.4022000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGC-----TGGCTT---------GTTATGT................................................................................................23200.2550050
.....................................................................................................................................................TG--ATAGATAGAAT------AGTTTACAAAA-C-TA......................................................................................................................................................................................................................................................................................................................................................27200.2044000
....................................................................................................................................................................................................................................................T-------------------------------------------------------------TACAATGTTATTATA-----------TCTTAATTTAGT........................................................................................................................................................................................28200.1533000
....................................................................................................................................................................................................................................................T-------------------------------------------------------------TACAATGTTATTATA-----------TCTTAATT............................................................................................................................................................................................24200.1533000
..................................................................................................................................................................................................TAGA----TAGT-ATAGCATTAGCTACGG--...............................................................................................................................................................................................................................................................................................................24200.1022000
.................................................................................................................................................................................................TTAGA----TAGT-ATAGCATTAGCTA....................................................................................................................................................................................................................................................................................................................22200.1020020
..................................................................................................................................................................................................TAGA----TAGT-ATAGCATTAGCTACGG--GG.............................................................................................................................................................................................................................................................................................................26200.1022000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGC-----TGGCTT---------GTTATGTACAA............................................................................................27200.1020020
...............................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TT.................26190.0511000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TT.................24190.0510010
...............................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------T..................25190.0510010
..............................................................................................................................................................................................................................................................................................................................................................................................................................TT---------GTTATGTACAATTGCCTGTTTTG-------------------------------------------------------------TT.................27190.0511000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-----TGGCTT---------GTTATGTACAATTG.........................................................................................24200.0510010
..........................................................................................................................................................................................................TAGT-ATAGCATTAGCTACGG--GGC............................................................................................................................................................................................................................................................................................................23200.0511000
.....................................................................................................................................................TG--ATAGATAGAAT------AGTTTACAAAA-C-........................................................................................................................................................................................................................................................................................................................................................25200.0510001
..................................................................................................................................................................................................TAGA----TAGT-ATAGCATTAGCTACG..................................................................................................................................................................................................................................................................................................................23200.0511000
.................................................................................................................................................................................................TTAGA----TAGT-ATAGCATTAGCTAC...................................................................................................................................................................................................................................................................................................................23200.0511000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGC-----TGGCTT---------GTTATGTACAATT..........................................................................................29200.0511000
........................................................................................................................................................................................................................................................................................................................................................................T---CTAATTTGG---------------------TAACTAATTGC-----TGG...................................................................................................................24200.0511000
...........................................................................................................................................................AGATAGAAT------AGTTTACAAAA-C-T.......................................................................................................................................................................................................................................................................................................................................................22200.0511000
..........................................................................................................................................................................................................TAGT-ATAGCATTAGCTACGG--GG.............................................................................................................................................................................................................................................................................................................22200.0510010
..........................................................................................................................................................................................GACTAACTTAGA----TAGT-ATAGCATTAGC......................................................................................................................................................................................................................................................................................................................27200.0511000
...................................................................................................................................................................................................................CATTAGCTACGG--GGCTTACAGCTAT..................................................................................................................................................................................................................................................................................................25200.0511000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGC-----TGGCTT---------GTTAT..................................................................................................21200.0511000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-----TGGCTT---------GTTATGTACAATTGCC.......................................................................................26200.0510001
.............................................................................................................................................................................TTACAAAA-C-TAGACTAACTTAGA----A.....................................................................................................................................................................................................................................................................................................................................24200.0511000
droYak3
AGGCC---------TA-TA----TTA----------------------T------------------T-----------------------------------A-----GT----------ATTATTATT------ATTA--TTAT-TATA--ATGGATAGAGC------AGTTTACAAAA-C-TAAACTAAATTAAG----TAAT-ATAGCACTAGCTGCAG--GGCCTATGGCTATGTTGGTT-------------------------------------------------------------TACAATTTTTATTTATTTATTATTTTTTTTAATCTAATTA--AT---------GG---CTAATTGGC---------------------AAAATGA--------------------------------CATTTGTTT-------------------T--------------------------T-----------------TT-TTTTTTAATTTGGTGGTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................TGCAG--GGCCTATGGCTATGTTGGTT-------------------------------------------------------------..............................................................................................................................................................................................................................25150.33502300000000
..............................................................................................................................................................................................................................G--GGCCTATGGCTATGTTGGTT-------------------------------------------------------------TACAATT.......................................................................................................................................................................................................................28130.08101000000000
..........................................................................................................................................................................................................................TGCAG--GGCCTATGGCTATGTTGGTC-------------------------------------------------------------..............................................................................................................................................................................................................................25150.07100100000000
..........................................................................................................................................................................................................................TGCAG--GGCCTATGGCTATGTTGG.............................................................................................................................................................................................................................................................................................23150.07101000000000
............................................................................................................................................................................................................................CAG--GGCCTATGGCTATGTTGG.............................................................................................................................................................................................................................................................................................21150.07101000000000
............................................................................................................................................................GATAGAGC------AGTTTACAAAA-C-T.......................................................................................................................................................................................................................................................................................................................................................21180.06100000010000
droEre2
CAGCT---------TT----------------------------------------------GGTTTT------------GCAAT---------------------GTTTT-AGGA-CAA-TTTAATT--------TTTATTTG-TTTAAA--GTGGATAGAGT------AGTGTACAAAA-C-TAACCCAACTTAAT----TATT-ATAGCGCAGG-TGCAG--GGCCTATGTATCTTAATCTTAATCATATT-GG-----------------------------------------------------------------------------------------------------------GTAGTGTGC---------------------TAAATTATT--------------------------TGTACTTT---------------------------------------------------T-----------------AT-TTTTTAGATTTTATGGTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 02:37 AM