ID:

dps_2015

 Coordinate:

Unknown_group_422:35623-35773 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.9 -4.1

Flybase annnotation

CDS [Dpse\GA23300-cds]; exon [dpse_GLEANR_11939:1]; intron [Dpse\GA23300-in]

Repeatable elements

NameClassFamilyStrand
Gypsy11-I_Dpse-intLTRGypsy+
mature
  1. dps_2015  Unknown_group_422:35726-35748 +
  2. Unknown_group_371:8879-8901 +
  3. Unknown_singleton_761:14588-14610 +
  4. Unknown_singleton_780:2375-2397 +
  5. Unknown_singleton_780:13412-13434 +
  6. Unknown_group_206:92148-92170 +
  7. Unknown_singleton_760:12628-12650 +
  8. Unknown_group_171:35675-35697 +
  9. Unknown_group_666:234-256 +
  10. Unknown_group_666:11989-12011 +
  11. Unknown_group_666:44894-44916 +
  12. Unknown_group_134:452-474 +
  13. Unknown_group_134:692-714 +
  14. Unknown_group_134:788-810 +
  15. Unknown_group_134:884-906 +
  16. Unknown_group_134:1220-1242 +
  17. Unknown_group_530:5833-5855 +
  18. Unknown_singleton_1998:2010-2032 +
  19. Unknown_singleton_1998:2058-2080 +
  20. Unknown_singleton_295:1757-1779 +
  21. Unknown_singleton_761:4253-4275 +
  22. Unknown_singleton_762:4758-4780 +
  23. Unknown_singleton_762:26425-26447 +
  24. Unknown_singleton_780:2519-2541 +
  25. Unknown_singleton_780:24058-24080 +
  26. Unknown_singleton_780:46392-46414 +
  27. Unknown_group_206:73508-73530 +
  28. Unknown_group_666:378-400 +
  29. Unknown_group_666:23561-23583 +
  30. Unknown_group_666:45038-45060 +
star
  1. dps_2015  Unknown_group_422:35694-35716 +
  2. Unknown_singleton_761:14604-14626 +
  3. Unknown_singleton_762:36959-36981 +
  4. Unknown_singleton_780:13380-13402 +
  5. Unknown_singleton_780:56363-56385 +
  6. Unknown_group_666:23385-23407 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATCGCCGGACAGCGGTCTCAGGATCCTGATGGGCCACGAAGTGAGGAAGGTATCATGAGCGGCTGACGCCAATCAGTAGTCACCGAGACAATCTAGCACAATCGCCGCGGGACGAAACCAACGCACCAGAGTCTCGAACCCGCCAGACCCCGCAATGTACCAGTGACAACGCACCTGAATCCCAACCACGCCAGATCCAGCCATGTACCAGTGACAACGCACCAGAATCCCGACCACGCCAGACCCAGCA
*************************************************************************************************************************..........((...................((..(((.......)))..)))).*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 GSM343916
embryo
 SRR902011
testis
 M062
head
 V112
male body
.........................................................................................................................................................CAATGTACCAGTGACAACGCACC........................................................................... 23 0 20 3.70 74 74 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGCAC............................................................................ 22 0 20 2.95 59 59 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGCACCT.......................................................................... 24 0 13 1.46 19 19 0 0 0 0 0 0
.........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACC........................... 23 0 16 1.06 17 14 2 0 0 0 1 0
.......................ATCCTGATGGGCGAGGAA.................................................................................................................................................................................................................. 18 2 2 1.00 2 2 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGCACCTG......................................................................... 25 0 13 0.62 8 8 0 0 0 0 0 0
.........................................................................................................................................................................................................CCATGTACCAGTGACAACGCAC............................ 22 0 16 0.56 9 7 2 0 0 0 0 0
..........................................................................................................................................................AATGTACCAGTGACAACGCACC........................................................................... 22 0 20 0.55 11 11 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGCACCTGAA....................................................................... 27 0 13 0.54 7 6 1 0 0 0 0 0
.........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACCA.......................... 24 0 16 0.50 8 8 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGCACCTGA........................................................................ 26 0 13 0.46 6 4 0 2 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTTACAACGCACC........................................................................... 23 1 20 0.45 9 8 1 0 0 0 0 0
....................................................................................................................................TCTCGAACCCGCCACACGCC................................................................................................... 20 2 5 0.40 2 1 1 0 0 0 0 0
.........................................................................................................................ACGCACCAGAGTCTCGAACCCGC........................................................................................................... 23 0 6 0.33 2 2 0 0 0 0 0 0
.........................................................................................................................ACGCACCAGAGTCTCGAACCC............................................................................................................. 21 0 6 0.33 2 1 0 1 0 0 0 0
..........................................................................................................................CGCACCAGAGTCTCGAACCCGCC.......................................................................................................... 23 0 6 0.33 2 2 0 0 0 0 0 0
....................................................................................................................................................................................TCCCAACCACGCCAGATCCAG.................................................. 21 0 13 0.31 4 4 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGATAACGCACCTG......................................................................... 25 1 13 0.23 3 3 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGC.............................................................................. 20 0 20 0.20 4 0 3 0 1 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGCAA............................................................................ 22 1 20 0.20 4 4 0 0 0 0 0 0
......................................................................................................................CCAACGCACCAGAGTCTCGAACC.............................................................................................................. 23 0 5 0.20 1 1 0 0 0 0 0 0
...................................................................................................................AAACCAACGCACCAGAGTCTCGAACCCG............................................................................................................ 28 0 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................CACCAGAGTCTCGAACCCGCCAGAC...................................................................................................... 25 0 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................................CGCACCAGAGTCTCGAACCCGCCAG........................................................................................................ 25 0 6 0.17 1 1 0 0 0 0 0 0
............................................................................................................................................................TGTACCAGTGACAACGCACCTGAATC..................................................................... 26 0 12 0.17 2 2 0 0 0 0 0 0
............................................................................................................................................................TGTACCAGTGACAACGCACCTGAAT...................................................................... 25 0 12 0.17 2 1 1 0 0 0 0 0
.................................................................................................................................GAGTCTCGAACCCGCCAGACCC.................................................................................................... 22 0 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................................CGCACCAGAGTCTCGAACCCGA........................................................................................................... 22 1 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................................CGCACCAGAGTCTCGAACCCGCCAGAA...................................................................................................... 27 1 6 0.17 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACCAG......................... 25 0 13 0.15 2 2 0 0 0 0 0 0
..........................................................................................................................................................AATGTACCAGTGACAACGCACCTG......................................................................... 24 0 13 0.15 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................CCATGTACCAGTGACAACGCA............................. 21 0 16 0.13 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................CCATGTACCAGTGACAACGC.............................. 20 0 17 0.12 2 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TACCAGTGACAACGCACCAGAATCC.................... 25 0 20 0.10 2 1 0 1 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTTACAACGCAC............................................................................ 22 1 20 0.10 2 0 2 0 0 0 0 0
............................................................................................................................................................TGTACCAGTGACAACGCACCTGAATCC.................................................................... 27 0 12 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................TACCAGTGACAACGCACCTGAATCCCAAC................................................................ 29 0 12 0.08 1 0 1 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGATAACGCACCTGAAT...................................................................... 28 1 12 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................TACCAGTGACAACGCACCTGAATCC.................................................................... 25 0 12 0.08 1 0 0 0 0 1 0 0
..........................................TCAGGAAGGCATCATGACC.............................................................................................................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................................GTACCAGTGACAACGCACCTGAATCC.................................................................... 26 0 12 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................AATGTACCAGTGATAACGCACCTGAA....................................................................... 26 1 13 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................ATGTACCAGTGACAACGCACCT.......................................................................... 22 0 13 0.08 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACCAGA........................ 26 0 13 0.08 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................CCCAACCACGCCAGATCCAG.................................................. 20 0 13 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................AATGTACCAGTGACAACGCACCTGAA....................................................................... 26 0 13 0.08 1 1 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGATAACGCACCT.......................................................................... 24 1 13 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CAACCACGCCAGATCCAGCCATGTA........................................... 25 0 13 0.08 1 1 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAACGCACCTGT........................................................................ 26 1 13 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................AATGTACCAGTGACAACGCACCTGT........................................................................ 25 1 13 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................TGTACCAGTGACAACGCACCTG......................................................................... 22 0 13 0.08 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................ACGCACCAGAATCCCGACCACG............ 22 0 14 0.07 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGCACCAGAATCCCGACCACGC........... 22 0 14 0.07 1 1 0 0 0 0 0 0
............GCGGTCTAAGGCTCCTGA............................................................................................................................................................................................................................. 18 2 14 0.07 1 1 0 0 0 0 0 0
.........................................................................................................................................................CAATGTACCAGTGACAAAGCACCTAA........................................................................ 26 2 16 0.06 1 1 0 0 0 0 0 0
..........................................................................................................................................................AATGTACCAGTTACAACGCA............................................................................. 20 1 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................................ACGCACCTCAATCCCAACCACGC........................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0
..........................................................................................................................................................................CGCACCTGAATCCCAACCACGCC.......................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................TGTACCAGTGACAACGCACCAGAATC..................... 26 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ACCAGTGACAACGCACCAG......................... 19 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TACCAGTGACAACGCACCAGAATC..................... 24 0 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................AATGTACCAGTTACAACGCACC........................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................................................ATGTACCAGTGACAACGCACC........................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ACCAGTGACAACGCACCAGAATCC.................... 24 0 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................ATGTACCAGTTACAACGCAA............................ 20 2 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................TGTACCAGTGACAACGCACCAGAATCCC................... 28 0 20 0.05 1 1 0 0 0 0 0 0
..TCGCCGGACAGCGCTCTCAGGATA................................................................................................................................................................................................................................. 24 2 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................TGTACCAGTGACAACGCACCAGA........................ 23 0 20 0.05 1 1 0 0 0 0 0 0
..TCGCCGGACAGCGGTCACAGGATC................................................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................................................................................TGACAACGCCCGTGAATCCG................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

TTAGCGGCCTGTCGCCAGAGTCCTAGGACTACCCGGTGCTTCACTCCTTCCATAGTACTCGCCGACTGCGGTTAGTCATCAGTGGCTCTGTTAGATCGTGTTAGCGGCGCCCTGCTTTGGTTGCGTGGTCTCAGAGCTTGGGCGGTCTGGGGCGTTACATGGTCACTGTTGCGTGGACTTAGGGTTGGTGCGGTCTAGGTCGGTACATGGTCACTGTTGCGTGGTCTTAGGGCTGGTGCGGTCTGGGTCGT
***************************************************************************..........((...................((..(((.......)))..)))).************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 GSM444067
head
 M059
embryo
 GSM343916
embryo
...............................................................................................................................................GGTCTGGGGCGTTACATGGT........................................................................................ 20 0 4 16.75 67 61 5 0 1 0 0 0
.............................................................................................................................................GCGGTCTGGGGCGTTACATGGT........................................................................................ 22 0 4 9.75 39 38 0 0 0 1 0 0
..............................................................................................................................................CGGTCTGGGGCGTTACATGGT........................................................................................ 21 0 4 8.50 34 31 3 0 0 0 0 0
............................................................................................................................................GGCGGTCTGGGGCGTTACATGGT........................................................................................ 23 0 4 6.50 26 25 0 0 0 1 0 0
................................................................................................................................................GTCTGGGGCGTTACATGGT........................................................................................ 19 0 4 5.75 23 23 0 0 0 0 0 0
..............................................................................................................................................................................................CGGTCTAGGTCGGTACATGGT........................................ 21 0 13 4.77 62 60 0 2 0 0 0 0
............................................................................................................................................................................................TGCGGTCTAGGTCGGTACATGGT........................................ 23 0 13 4.62 60 52 6 1 1 0 0 0
.............................................................................................................................................................................................GCGGTCTAGGTCGGTACATGGT........................................ 22 0 13 4.00 52 52 0 0 0 0 0 0
...............................................................................................................................................................................................GGTCTAGGTCGGTACATGGT........................................ 20 0 13 3.62 47 46 0 1 0 0 0 0
..........................................................................................................................................................................................GGTGCGGTCTAGGTCGGTACATGGT........................................ 25 0 13 3.23 42 42 0 0 0 0 0 0
...........................................................................................................................................................................................GTGCGGTCTAGGTCGGTACATGGT........................................ 24 0 13 2.38 31 29 2 0 0 0 0 0
..............................................................................................................................................TGGTCTGGGGCGTTACATGGT........................................................................................ 21 1 4 1.50 6 4 1 0 0 0 0 1
..........................................................................................................................................TGGGCGGTCTGGGGCGTTACATGGT........................................................................................ 25 0 4 1.00 4 1 3 0 0 0 0 0
...........................................................................................................................................GGGCGGTCTGGGGCGTTACATGGT........................................................................................ 24 0 4 1.00 4 2 2 0 0 0 0 0
................................................................................................................................................................................................GTCTAGGTCGGTACATGGT........................................ 19 0 13 0.92 12 11 0 0 0 0 0 1
..............................................................................................................................................................................................CGGTCTAGGTCGGTACATGG......................................... 20 0 13 0.62 8 8 0 0 0 0 0 0
..............................................................................................................................................CGGTCTGGGGCGTTACATGG......................................................................................... 20 0 4 0.50 2 2 0 0 0 0 0 0
.................................................................................GTGGCTCTCTTGGATCGTG....................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................................TGTCTGGGGCGTTACATGGT........................................................................................ 20 1 4 0.50 2 2 0 0 0 0 0 0
................................................................................................................................................GTCTGGGGCGTTACATGG......................................................................................... 18 0 4 0.50 2 2 0 0 0 0 0 0
.................................................................................................................................................TCTGGGGCGTTACATGGT........................................................................................ 18 0 4 0.50 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................TGGTGCGGTCTAGGTCGGTACATGGT........................................ 26 0 13 0.38 5 5 0 0 0 0 0 0
...........................................................................................................................CGTGGTCTCAGAGCTTGGGCGGT......................................................................................................... 23 0 6 0.33 2 0 2 0 0 0 0 0
............GGCATGAGTCCTAGGACT............................................................................................................................................................................................................................. 18 3 20 0.30 6 6 0 0 0 0 0 0
...............................................................................................................................................GGTCTGGGGCGTTACATGG......................................................................................... 19 0 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................................................GCGGTCTGGGGCGTTACATGGTCAC..................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................................................GGTCTGGGGCGTTACACGGT........................................................................................ 20 1 4 0.25 1 1 0 0 0 0 0 0
................................................................................................................................................GTCTGGGGCGTTACATGGA........................................................................................ 19 1 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................................................ACGGTCTGGGGCGTTACATGGT........................................................................................ 22 1 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................................................GGTCTGGGGCGTTACATGGTC....................................................................................... 21 0 4 0.25 1 0 0 0 0 0 1 0
.........................................................................................................................................TTGGGCGGTCTGGGGCGTTACATGGT........................................................................................ 26 0 4 0.25 1 0 0 0 1 0 0 0
............................................................................................................................................TGCGGTCTGGGGCGTTACATGGT........................................................................................ 23 1 20 0.25 5 4 0 0 1 0 0 0
..............................................................................................................................................TTGTCTGGGGCGTTACATGGT........................................................................................ 21 2 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................................................GCGGTCTGGGGCGTTACATGG......................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................GTGCGGTCTAGGTCGGTACATGG......................................... 23 0 13 0.23 3 3 0 0 0 0 0 0
.................................................................................................................GCTTTGGTTGCGTGGTCTC....................................................................................................................... 19 0 5 0.20 1 1 0 0 0 0 0 0
....................................................................................................................TTGGTTGCGTGGTCTCAGAGCTT................................................................................................................ 23 0 5 0.20 1 1 0 0 0 0 0 0
....................................................................................................................TTGGTTGCGTGGTCTCAGAGCT................................................................................................................. 22 0 5 0.20 1 1 0 0 0 0 0 0
..............................................................................................................CCTGCTTTGGTTGCGTGGTCTCAGAGCT................................................................................................................. 28 0 5 0.20 1 1 0 0 0 0 0 0
...................................................................................................................TTTGGTTGCGTGGTCTCAGAGCT................................................................................................................. 23 0 5 0.20 1 1 0 0 0 0 0 0
......................................................................................................................GGTTGCGTGGTCTCAGAGCTT................................................................................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................CGGTACATGGTCACTGTTGCGTGGT.......................... 25 0 16 0.19 3 2 0 1 0 0 0 0
................................................................................................................................................................GGTCACTGTTGCGTGGACTTAGGGT.................................................................. 25 0 12 0.17 2 1 0 0 1 0 0 0
.............................................................................................................................................................................................GCGGTCTAGGTCGGTACATGG......................................... 21 0 13 0.15 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................GGTCTAGGTCGGTACATGG......................................... 19 0 13 0.15 2 2 0 0 0 0 0 0
..........................GTCTACCCGGTGCTGCAAT.............................................................................................................................................................................................................. 19 3 13 0.15 2 2 0 0 0 0 0 0
..........................................................................................................................................................................................TGTGCGGTCTAGGTCGGTACATGGT........................................ 25 1 13 0.15 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................CTAGGTCGGTACATGGTCACTGT.................................. 23 0 13 0.15 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................CGGTACATGGTCACTGTTGCGTGGTCTT....................... 28 0 13 0.15 2 1 0 1 0 0 0 0
..............................................................................................................CCTGCTTTGGTTGCGTGGTCT........................................................................................................................ 21 0 20 0.15 3 2 0 0 0 0 1 0
.....................................................................................................................................................................CTGTTGCGTGGACTTAGGGT.................................................................. 20 0 20 0.15 3 3 0 0 0 0 0 0
...................................GGGCTTGACTCCTTCCCTA..................................................................................................................................................................................................... 19 3 14 0.14 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................................GTCACTGTTGCGTGGTCTTAGGGCT................. 25 0 16 0.13 2 0 0 2 0 0 0 0
...............................................................................................................................................TGTCTGGGGCGTTGCATGGT........................................................................................ 20 2 8 0.13 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................GGTCACTGTTGCGTGGTCTTAGGG................... 24 0 20 0.10 2 2 0 0 0 0 0 0
................................................................................................................................................................GGTCACTGTTGCGTGGACTTAGGG................................................................... 24 0 12 0.08 1 1 0 0 0 0 0 0
................................................................................................................................................GTCTGGGGCGTTACATGGC........................................................................................ 19 1 13 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................GTGCGGTCTAGGTCGGTACATGGTC....................................... 25 0 13 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TGGTCTAGGTCGGTACATGGT........................................ 21 1 13 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................GGTGCGGTCTAGGTCGGTACATTGT........................................ 25 1 13 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................CGGTCTAGGTCGGTACATG.......................................... 19 0 13 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................GGTCTAGGTCGGTACATGGTC....................................... 21 0 13 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................GCGGTCTAGGTCGGTACATGGTCACT.................................... 26 0 13 0.08 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................GGTGCGGTCTAGGTCGGTACATGGTC....................................... 26 0 13 0.08 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................CGGTACATGGTCACTGTTGCGTGGTCT........................ 27 0 13 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TGCGGTCTAGGTCGGTACATGG......................................... 22 0 13 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................CGGCCTAGGTCGGTACATGGT........................................ 21 1 13 0.08 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................GCGGTCTAGGTCGGTACATGGTA....................................... 23 1 13 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TGCGGTCTAGGTCGGTACACGGT........................................ 23 1 13 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGTCACTGTTGCGTGGTCTTAGGGC.................. 26 0 13 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................CGGTCTAGGTCGGTACATGGC........................................ 21 1 13 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................CCGGTCTAGGTCGGTACATGGT........................................ 22 1 13 0.08 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................GGTGCGGTCTAGGTCGGTACATGG......................................... 24 0 13 0.08 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TTGGTGCGGTCTAGGTCGGTACATGGT........................................ 27 0 13 0.08 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GGTACATGGTCACTGTTGCGTGGTCT........................ 26 0 13 0.08 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................CTGCGGTCTAGGTCGGTACATGGT........................................ 24 1 13 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................GTGCGGTCTAGGTCGGTACATTGT........................................ 24 1 13 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................GGTCTAGGTCGGTACATGTT........................................ 20 1 13 0.08 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................GGTCTAGGTCGGTACATGGTCAC..................................... 23 0 13 0.08 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTTGCGTGGTCTTAGGGCTGGT.............. 22 0 14 0.07 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTGGTCTAGGTCGGTACATGG......................................... 21 2 14 0.07 1 1 0 0 0 0 0 0
............................................................................................................................................................................................AAAGGTCTAGGTCGGTACATGGT........................................ 23 3 14 0.07 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTCGGTACATGGTCACTGTTGCGT............................. 25 0 15 0.07 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTCGGTACATGGTCACTGTTGCGTG............................ 26 0 15 0.07 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTAGGGCTGGTGCGGTCTGGGT... 22 0 15 0.07 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCTTAGGGCTGGTGCGGT......... 19 0 15 0.07 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................CACTGTTGCGTGGTCTTAGGGCT................. 23 0 16 0.06 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGCTGGTGCGGTCTGGGTCGT 21 0 16 0.06 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTCGGTACATGGTCACTGTTGC............................... 23 0 16 0.06 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GTCACTGTTGCGTGGTCTTAGGGC.................. 24 0 16 0.06 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TCACTGTTGCGTGGTCTTAGGGC.................. 23 0 16 0.06 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTGTTGCGTGGTCTTAGGGC.................. 20 0 17 0.06 1 1 0 0 0 0 0 0
.....................................................................................................................................................................CTATTGCGTGGACTTAGGG................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TGGTGCGGTCTGGGT... 15 0 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................................AGTTGCGTGGACTTAGGGT.................................................................. 19 1 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................CACTGTTGCGTGGACTTAGGGT.................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GTCACTGTTGCGTGGTCGT....................... 19 1 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................................GTTGCGTGGACTTAGGGTTGG............................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................ACTGTTGCGTGGACTTAGGGT.................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................................GTTGCGTGGACTTAGGGTTG................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................CGGCGTCAGGCTTTGGTTG................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0
.....GGCCTGTCGCCAGAGTCCTAG................................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................................GTTGCGTGGACTTAGGGT.................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................................CTGTTGCGTGGACTTAGGGTT................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................GTGGACTTAGGGTTGGTGCGGT......................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................TGAATGGCTCTGTTCGAT........................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................CAATGTTGCGTGGTCTTAGG.................... 20 1 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................TACGTCGGTAAATGGTCA...................................... 18 2 20 0.05 1 1 0 0 0 0 0 0
.........TGTTGCCAGACTCCTTGGAC.............................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_422:35573-35823 + dps_2015 AATCGCCGGACAGCGGTCTCAGGATCCTGATGGGCCACGAAGTGAGGAAGGTATCATGAGCGGCTGACGCCAATCAGTAGTCACCGAGACAATCTAGC-ACAATCGCCGCGGGACGAAACCAACGCACCAGAGTCTCGAACCCGCCAGACCCCGCAATGTACCAGTGACAACGCACCTGAATCCCAACCACGCCAGATCCAGCCATGTACCAGTGACAACGCACCAGAATCCCGACCACGCCAGACCCAGCA
droPer2 scaffold_1612:70-277 + A----------------------------------------GTGACGAAAGTCCCGCGACTG-CATACGCTGCTCC-TACCCGCTCGACCAATCCAACGGCGACCGAC--CGGACGAAGACAACGCACCAGAATCCCGACCACGCCAGACCCGGCAATGTACCAGTGCCAACGCACCAGAATCCCGACCACGCCAGATCCGGCAATGTTCCAGTGACAACGCAACAGAATCCCAATCACGCCAGACCCTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AATCGCCGGACAGCGGTCTCAGGATCCTGATGGGCCACGAAGTGAGGAAGGTATCATGAGCGGCTGACGCCAATCAGTAGTCACCGAGACAATCTAGC-ACAATCGCCGCGGGACGAAACCAACGCACCAGAGTCTCGAACCCGCCAGACCCCGCAATGTACCAGTGACAACGCACCTGAATCCCAACCACGCCAGATCCAGCCATGTACCAGTGACAACGCACCAGAATCCCGACCACGCCAGACCCAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................CAATGTACCAGTGACAACGCACC...........................................................................23203.707407400000000
..........................................................................................................................................................CAATGTACCAGTGACAACGCAC............................................................................22202.955905900000000
..........................................................................................................................................................CAATGTACCAGTGACAACGCACCT..........................................................................24131.461901900000000
..........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACC...........................23161.061701421000000
..........................................................................................................................................................CAATGTACCAGTGACAACGCACCTG.........................................................................25130.6280800000000
..........................................................................................................................................................................................................CCATGTACCAGTGACAACGCAC............................22160.5690720000000
...........................................................................................................................................................AATGTACCAGTGACAACGCACC...........................................................................22200.551101100000000
..........................................................................................................................................................CAATGTACCAGTGACAACGCACCTGAA.......................................................................27130.5470610000000
..........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACCA..........................24160.5080800000000
..........................................................................................................................................................CAATGTACCAGTGACAACGCACCTGA........................................................................26130.4660400000200
..........................................................................................................................ACGCACCAGAGTCTCGAACCCGC...........................................................................................................2360.3320200000000
..........................................................................................................................ACGCACCAGAGTCTCGAACCC.............................................................................................................2160.3320100000100
...........................................................................................................................CGCACCAGAGTCTCGAACCCGCC..........................................................................................................2360.3320200000000
.....................................................................................................................................................................................TCCCAACCACGCCAGATCCAG..................................................21130.3140400000000
..........................................................................................................................................................CAATGTACCAGTGACAACGC..............................................................................20200.2040030100000
..........................................................................................................................................................CAATGTACCAGTGACAACGCAA............................................................................22200.2040400000000
.......................................................................................................................CCAACGCACCAGAGTCTCGAACC..............................................................................................................2350.2010100000000
....................................................................................................................AAACCAACGCACCAGAGTCTCGAACCCG............................................................................................................2850.2010100000000
.............................................................................................................................CACCAGAGTCTCGAACCCGCCAGAC......................................................................................................2560.1710100000000
...........................................................................................................................CGCACCAGAGTCTCGAACCCGCCAG........................................................................................................2560.1710100000000
.............................................................................................................................................................TGTACCAGTGACAACGCACCTGAATC.....................................................................26120.1720200000000
.............................................................................................................................................................TGTACCAGTGACAACGCACCTGAAT......................................................................25120.1720110000000
..................................................................................................................................GAGTCTCGAACCCGCCAGACCC....................................................................................................2260.1710100000000
...........................................................................................................................CGCACCAGAGTCTCGAACCCGA...........................................................................................................2260.1710100000000
...........................................................................................................................CGCACCAGAGTCTCGAACCCGCCAGAA......................................................................................................2760.1710100000000
..........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACCAG.........................25130.1520200000000
...........................................................................................................................................................AATGTACCAGTGACAACGCACCTG.........................................................................24130.1520200000000
..........................................................................................................................................................................................................CCATGTACCAGTGACAACGCA.............................21160.1320200000000
..........................................................................................................................................................................................................CCATGTACCAGTGACAACGC..............................20170.1220110000000
...............................................................................................................................................................................................................TACCAGTGACAACGCACCAGAATCC....................25200.1020100000100
.............................................................................................................................................................TGTACCAGTGACAACGCACCTGAATCC....................................................................27120.0810100000000
...............................................................................................................................................................TACCAGTGACAACGCACCTGAATCCCAAC................................................................29120.0810010000000
...............................................................................................................................................................TACCAGTGACAACGCACCTGAATCC....................................................................25120.0810000000010
..............................................................................................................................................................GTACCAGTGACAACGCACCTGAATCC....................................................................26120.0810100000000
............................................................................................................................................................ATGTACCAGTGACAACGCACCT..........................................................................22130.0810010000000
..........................................................................................................................................................................................................CCATGTACCAGTGACAACGCACCAGA........................26130.0810100000000
......................................................................................................................................................................................CCCAACCACGCCAGATCCAG..................................................20130.0810100000000
...........................................................................................................................................................AATGTACCAGTGACAACGCACCTGAA.......................................................................26130.0810100000000
........................................................................................................................................................................................CAACCACGCCAGATCCAGCCATGTA...........................................25130.0810100000000
..........................................................................................................................................................CAATGTACCAGTGACAACGCACCTGT........................................................................26130.0810100000000
...........................................................................................................................................................AATGTACCAGTGACAACGCACCTGT........................................................................25130.0810100000000
.............................................................................................................................................................TGTACCAGTGACAACGCACCTG.........................................................................22130.0810000100000
..........................................................................................................................................................................................................................ACGCACCAGAATCCCGACCACG............22140.0710100000000
...........................................................................................................................................................................................................................CGCACCAGAATCCCGACCACGC...........22140.0710100000000
...........................................................................................................................................................................CGCACCTGAATCCCAACCACGCC..........................................................23200.0510100000000
.............................................................................................................................................................................................................TGTACCAGTGACAACGCACCAGAATC.....................26200.0510100000000
................................................................................................................................................................................................................ACCAGTGACAACGCACCAG.........................19200.0510100000000
...............................................................................................................................................................................................................TACCAGTGACAACGCACCAGAATC.....................24200.0510100000000
............................................................................................................................................................ATGTACCAGTGACAACGCACC...........................................................................21200.0510100000000
................................................................................................................................................................................................................ACCAGTGACAACGCACCAGAATCC....................24200.0510100000000
.............................................................................................................................................................................................................TGTACCAGTGACAACGCACCAGAATCCC...................28200.0510100000000
.............................................................................................................................................................................................................TGTACCAGTGACAACGCACCAGA........................23200.0510100000000
droPer2
A----------------------------------------GTGACGAAAGTCCCGCGACTG-CATACGCTGCTCC-TACCCGCTCGACCAATCCAACGGCGACCGAC--CGGACGAAGACAACGCACCAGAATCCCGACCACGCCAGACCCGGCAATGTACCAGTGCCAACGCACCAGAATCCCGACCACGCCAGATCCGGCAATGTTCCAGTGACAACGCAACAGAATCCCAATCACGCCAGACCCTGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................TG-CATACGCTGCTCC-TACCC..........................................................................................................................................................................2060.171010000
..................................................GTCCCGCGACTG-CATACGCTG....................................................................................................................................................................................2170.141010000
.................................................AGTCCCGCGACTG-CATACGCTGCTC.................................................................................................................................................................................2570.141100000

Generated: 05/18/2015 at 02:38 AM