ID:

dps_2007

 Coordinate:

Unknown_group_4:117056-117206 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.7 -19.6 -19.6

Flybase annnotation

exon [dpse_GLEANR_7012:1]; CDS [Dpse\GA16014-cds]; intron [Dpse\GA16014-in]

No Repeatable elements found

mature
  1. dps_2007  Unknown_group_4:117164-117190 +
  2. Unknown_group_18:27741-27767 +
  3. Unknown_group_77:16242-16268 -
  4. 2:18283907-18283933 -
  5. Unknown_group_410:15009-15035 -
  6. Unknown_group_305:4109-4135 +
  7. Unknown_singleton_3071:424-450 -
star

Sense Strand Reads

------------######################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCAGAATTCATTATGCCTTCTTCACTGTGTGAAACGATTAAAAATTCCGCGTAAGTTGTAAATTAATCTAAATACCATCTAAATATACAATAATTTACGAAATATATATGTAGCGGCGGTGCAGCGATATGCGGGCGGTTGATTATGATTTTTTTTCCTACTAACTTCCACTCCACAAAAGAAGTCGAGCCATAAAATTTTGGTCCTTCGAGCCGGATCATACGAGTCTGATTTTATTTTATATATTGAGT
**************************************************(((((((((..............................)))))))))(((((.((((..((((.((..((((......)))).)).))))..)))))))))........((.(((((............)))))..))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 GSM343916
embryo
 M062
head
 GSM444067
head
 M022
male body
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGT.................................................................. 27 0 7 25.29 177 124 42 4 4 2 0 0 1 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAG................................................................... 26 0 11 20.64 227 139 66 10 7 0 3 2 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAA.................................................................... 25 0 11 7.18 79 75 1 3 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAG...................................................................... 23 0 11 5.09 56 41 7 7 1 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGA..................................................................... 24 0 11 5.00 55 50 1 3 0 0 1 0 0 0
......................................................................................................................................................................................................................GGATCATACGAGTCTGAGGAT................ 21 3 4 2.00 8 8 0 0 0 0 0 0 0 0
...................................................................................................................................................ATTTTATTTTCTATTAACTTCCA................................................................................. 23 3 4 2.00 8 5 2 0 0 0 0 1 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGTC................................................................. 28 0 7 1.29 9 8 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................GGATCATACGAGTCTGAG................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACTAACTTCCACTCCACAAAAGAAG................................................................... 25 0 19 1.00 19 19 0 0 0 0 0 0 0 0
..................................................................................................................................................GATTTAATTTCCTATTAACTTCCA................................................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGTA................................................................. 28 1 7 1.00 7 7 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACTAACTTCCACTCCACAAAAGAAGT.................................................................. 26 0 15 0.87 13 13 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGC.................................................................. 27 1 11 0.82 9 0 9 0 0 0 0 0 0 0
....................................................................................................................................................TTTTATTTTCTATTAACTTCCA................................................................................. 22 3 12 0.75 9 7 1 0 0 0 0 1 0 0
.............................................................................................................................................................CTACTAACTTCCACTCCACAAAAGAAGT.................................................................. 28 0 6 0.67 4 2 1 0 0 1 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAA........................................................................ 21 0 12 0.50 6 6 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGATCATACGAGTCTGAGG.................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGTCGA............................................................... 27 0 14 0.43 6 6 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCCACTCCACAAAAGAAGTCGAGC............................................................. 25 0 15 0.40 6 4 0 2 0 0 0 0 0 0
...............................................................................................................................................................ACTAACTTCCACTCCACAAAAG...................................................................... 22 0 19 0.37 7 7 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGA.................................................................. 27 1 11 0.36 4 3 1 0 0 0 0 0 0 0
..............................................................................................................................................................TAATAACTTCCACTCCACAAAAGAAG................................................................... 26 1 11 0.36 4 0 4 0 0 0 0 0 0 0
......................................................................................................................................................................TCCACTCCACAAAAGAAGTCGAGC............................................................. 24 0 15 0.33 5 5 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAA....................................................................... 22 0 12 0.33 4 4 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGTGGATCATACGAGTCTGA.................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................CTTACTAACTTCCACTCCACAAAAGAAG................................................................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TCCACTCCACAAAAGAAGTCGAGCC............................................................ 25 0 14 0.21 3 2 1 0 0 0 0 0 0 0
...............................................................................................................................................................ACTAACTTCCACTCCACAAAAGAA.................................................................... 24 0 19 0.21 4 4 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTACTAACTTCCACTCCACAAAAGAAG................................................................... 27 0 10 0.20 2 1 1 0 0 0 0 0 0 0
.....GTTCAATATCCCTTCTTCAC.................................................................................................................................................................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAA................................................................... 26 1 11 0.18 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACA.......................................................................... 19 0 12 0.17 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTACTAACTACCACTCCACAAAAGAAGT.................................................................. 28 1 6 0.17 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................ACTAACTTCCACTCCACAAAAGA..................................................................... 23 0 19 0.16 3 3 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATACTAACTTCCACTCCACAAAAGAAGT.................................................................. 28 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACCCCACAAAAGAAGT.................................................................. 27 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAGGAAGT.................................................................. 27 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCAATCCACAAAAGAAGT.................................................................. 27 1 7 0.14 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTCCCACTCCACAAAAGAAGT.................................................................. 27 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACAAACTTCCACTCCACAAAAGAAGT.................................................................. 27 1 7 0.14 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TATTAACTTCCACTCCACAAAAGAAGT.................................................................. 27 1 7 0.14 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGTCG................................................................ 26 0 14 0.14 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACCTCCACTCCACAAAAGAAGT.................................................................. 27 1 8 0.13 1 1 0 0 0 0 0 0 0 0
.............................TGAAACTATTAAAAATACC........................................................................................................................................................................................................... 19 2 8 0.13 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................ACATGCGGACGGTTAATTA.......................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................TTTTGGTCCTTCGAGCCGGAT................................. 21 0 20 0.10 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................................TTCCACTCCACAAAAGAAG................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................ACTACTAACTTCCACTCCACAAAAGAAG................................................................... 28 1 10 0.10 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................CTAACTTCCACTCCACAAAAGAAG................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACCCCACAAAAGAAG................................................................... 26 1 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTACACAAAAGAAG................................................................... 26 1 11 0.09 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................ATACTAACTTCCACTCCACAAAAGA..................................................................... 25 1 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAATTTCCACTCCACAAAAGAAG................................................................... 26 1 11 0.09 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAGCTTCCACTCCACAAAAGAAG................................................................... 26 1 11 0.09 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGAGG................................................................... 26 1 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAAAAGGAG................................................................... 26 1 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTCCCACTCCACAAAAG...................................................................... 23 1 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCACAA......................................................................... 20 0 12 0.08 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCTACAAAAGAAG................................................................... 26 1 13 0.08 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TACTAACTTCCACTCCAC........................................................................... 18 0 13 0.08 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................AACTTCCACTCCACAAAAGAAGTCGA............................................................... 26 0 14 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAAGAACTTCCACTCCACAAAAGAAG................................................................... 26 2 14 0.07 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................CCACTCCACAAAAGAAGTCGAGC............................................................. 23 0 15 0.07 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGATTTTTTTTCCTAGGATC...................................................................................... 20 3 15 0.07 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................CACTCCACAAAAGAAGTCGAGCC............................................................ 23 0 15 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................CTAACTTCCACTCCACAAAAGAAGT.................................................................. 25 0 16 0.06 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCTAACTTCCACTCCACAAAAGAAGT.................................................................. 26 1 16 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGTC................................................................. 25 0 16 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTCCACTCCACAAAAGAAGTCGAG.............................................................. 24 0 16 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGT.................................................................. 24 0 16 0.06 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TCCACAAAAGAAGTCGAGCC............................................................ 20 0 17 0.06 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TCCACAAAAGAAGTCGAGCCA........................................................... 21 0 17 0.06 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................CCACAAAAGAAGTCGAGC............................................................. 18 0 18 0.06 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTTTGGTCCTTCGAGCCGGATC................................ 23 0 18 0.06 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TCCACAAAAGAAGTCGAGC............................................................. 19 0 18 0.06 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAATTTTGGTCCTTCGAGCCGGATA................................ 25 1 18 0.06 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................ACTTCCACTCCACAAAAGAAGT.................................................................. 22 0 19 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................CACTAACTTCCACTCCACAAAAGAAG................................................................... 26 1 19 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTTGGTCCTTCGAGCCGGATC................................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TTTTGGTCCTTCGAGTCGGATC................................ 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................ACTAACTTCCACTCCACAAA........................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACTAACTTCCACTCCACAAAA....................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................ACTTCCACTCCACAAAAGAAG................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TAACTTCCACTCCACAAAAGAAG................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................GCGGAAGTTGTAAAATAA......................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................TTTTGGTCCTTCGAGCCGGATC................................ 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AGTCTTAAGTAATACGGAAGAAGTGACACACTTTGCTAATTTTTAAGGCGCATTCAACATTTAATTAGATTTATGGTAGATTTATATGTTATTAAATGCTTTATATATACATCGCCGCCACGTCGCTATACGCCCGCCAACTAATACTAAAAAAAAGGATGATTGAAGGTGAGGTGTTTTCTTCAGCTCGGTATTTTAAAACCAGGAAGCTCGGCCTAGTATGCTCAGACTAAAATAAAATATATAACTCA
**************************************************(((((((((..............................)))))))))(((((.((((..((((.((..((((......)))).)).))))..)))))))))........((.(((((............)))))..))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 SRR902010
ovaries
 M059
embryo
 GSM343916
embryo
 M062
head
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTA................................. 18 0 20 111.90 2238 2190 46 2 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTACT............................... 20 1 9 2.67 24 12 9 1 0 2 0 0
...................................................................................................................................GCCCCACCACTAATACTAAAA................................................................................................... 21 3 3 1.33 4 4 0 0 0 0 0 0
..........................................................................................................................................................AAGGATGATTGAAGGTGAGGTGT.......................................................................... 23 0 3 1.00 3 0 0 0 3 0 0 0
...................................................................................................................CGCCACGTCGCTATACGCCCGCCAACT............................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGTATGCTCAGACTAAAATAAAATAT........ 26 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................GAAGCTCGGCCTAGCTTG............................ 18 2 5 0.60 3 3 0 0 0 0 0 0
.......................................................................................................................................................AAAAAGCATGATTGAAGGTGAGGTGT.......................................................................... 26 1 2 0.50 1 0 0 1 0 0 0 0
...................................................................................................................................GCCCCACCACTAATACTAAA.................................................................................................... 20 3 5 0.40 2 2 0 0 0 0 0 0
.............................................................................................................................................................GATGATTGAAGGTGAGGTGTTTTCTT.................................................................... 26 0 10 0.40 4 1 0 0 3 0 0 0
..........................................................................................................................................................AAGGATGATTTAGGGTGAGGTATT......................................................................... 24 3 3 0.33 1 0 0 0 0 0 1 0
....................................................................................................................................CCCCACCACTAATACTAAAAA.................................................................................................. 21 3 6 0.33 2 2 0 0 0 0 0 0
................................................................TTAGATGTATGGTAAATTTAAAT.................................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................CACCAGGAAGCTCGGCCTA................................. 19 1 20 0.30 6 6 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCGA................................. 18 1 20 0.30 6 1 0 0 0 0 0 5
.............................................................................................................................................................GATGATTGAAGGTGAGGTGTTTTCT..................................................................... 25 0 10 0.30 3 0 0 1 2 0 0 0
.............................................................................................................................................................GATGATTGAAGGTGAGGTGTT......................................................................... 21 0 11 0.27 3 0 0 0 3 0 0 0
.........................................................................................................................................................................................................CCAGGAAGCTCGGCCTAGCTTCC........................... 23 3 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTACTTTG............................ 23 2 4 0.25 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AACCAGGAAGCTCGGCCTAGTAT............................. 23 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTAGCTTG............................ 23 2 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTAGCTTCC........................... 24 3 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTATTA.............................. 21 1 5 0.20 1 1 0 0 0 0 0 0
.............................................................................................................................................................GATGATTGAAGGTGAGGTGTTTTC...................................................................... 24 0 10 0.20 2 0 0 0 2 0 0 0
..............................................................................................................................................................ATGATTGAAGGTGAGGTGTTTTCT..................................................................... 24 0 11 0.18 2 1 0 1 0 0 0 0
............................................................................................................................................................................GGTGTTTTCTTCAGCTCGGT........................................................... 20 0 17 0.18 3 3 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTCGGCT............................. 22 3 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTCGCTT............................. 22 3 6 0.17 1 0 0 0 0 1 0 0
........................................................................................................................................................AAAAGGATTTTTGAAGGTGAGGTGT.......................................................................... 25 2 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................AAAAGGACTTTTGAAGGTGAGGTGTT......................................................................... 26 3 6 0.17 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................ATACCAGGAAGCTCGGCCT.................................. 19 1 20 0.15 3 3 0 0 0 0 0 0
...................................................................................................................CGCCTCTGCGCTATACGCCC.................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTAACTTG............................ 23 3 8 0.13 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................AACCAGGAAGCTCGGCCTACTT.............................. 22 2 9 0.11 1 0 0 1 0 0 0 0
....................................................................................................................................................................GAAGGTGAGGTGTTTTCTT.................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................CCAGGAAGCTCGGCCTCG................................ 18 1 20 0.10 2 2 0 0 0 0 0 0
.............................................................................................................................................................GATGATTGAAGGCGAGGTGTTTTC...................................................................... 24 1 10 0.10 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTAGACTGG........................... 24 3 20 0.10 2 0 0 0 0 2 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTATT............................... 20 1 10 0.10 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTATTC.............................. 21 2 10 0.10 1 0 0 0 0 1 0 0
......................................................................................................................................................................................................AAACCAGGAAGCTCGGCCT.................................. 19 0 20 0.10 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACTAAAATAAAATAT........ 15 0 10 0.10 1 0 0 0 1 0 0 0
.............................................................................................................................................................GATGATTGAAGGTGAGGTGTTTT....................................................................... 23 0 11 0.09 1 0 0 0 1 0 0 0
.............................................................................................................................................................GATGATTGAAGGTGAGGTGTTT........................................................................ 22 0 11 0.09 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................GAAGCTCGGCCTAATTTG............................ 18 2 12 0.08 1 0 0 0 0 1 0 0
..............................................................................................................................................................ATGATTGAAGGTGAGGTGTTT........................................................................ 21 0 12 0.08 1 0 0 1 0 0 0 0
........................................................................................................................................................................GTGAGGTGTTTTCTTCAGCTCGGT........................................................... 24 0 15 0.07 1 1 0 0 0 0 0 0
....................................................................................................................................................................GAAGGTGAGGTGTTTTCTTCAGCT............................................................... 24 0 17 0.06 1 0 0 0 0 0 1 0
...................................................................................................................................................................AAAAGGTGAGGTGTTTTCTTCAGC................................................................ 24 2 17 0.06 1 1 0 0 0 0 0 0
..........................................................................................................................................................................GAGGTGTTTTCTTCAGCTCGGT........................................................... 22 0 17 0.06 1 1 0 0 0 0 0 0
...........................................................................................................................................................................AGGTGTTTTCTTCAGCTCGGT........................................................... 21 0 17 0.06 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................GTAAGACCAGGAAGCTCGGCCTA................................. 23 2 18 0.06 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................TTAAAACCAGGAAGCTCGGCCT.................................. 22 0 18 0.06 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................AAAACCAGGAAGCTCGGCCT.................................. 20 0 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................GTTGCTCAGACTAAAATTA............. 19 3 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGC.................................... 15 0 20 0.05 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TACCAGGAAGCTCGGCCTA................................. 19 1 20 0.05 1 0 0 0 0 0 0 1
.................................................................................................................................................................ATTGAAGGTGAGGTGTTT........................................................................ 18 0 20 0.05 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCTTCCTA................................. 18 2 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................ATTGAAGGTGAGGTGTTTTCTT.................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................GAAGGTGAGGTGTTTTCTTC................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................TGATTGAAGGTGAGGTGTTTT....................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................CCAGGAAGCTCGGCCTAGACTGG........................... 23 3 20 0.05 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGGCCTC................................. 18 1 20 0.05 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................ACCAGGAAGCTCGCCCTA................................. 18 1 20 0.05 1 0 0 0 0 0 0 1
........................................................................................................................................................................................................GCCAGGAAGCTCGGCCTCG................................ 19 2 20 0.05 1 1 0 0 0 0 0 0
......................................................CGACATTTAAATAGATTT................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................GCCCCACCACTAATACTAA..................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAAACAGGAAGCTCGGCCT.................................. 20 1 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................................................................GATTGAAGGTGAGGTGTTT........................................................................ 19 0 20 0.05 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................ACCAGGAAGTTCGGCCTA................................. 18 1 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................................................................GATTGAAGGTGAGGTGTTTTCTTC................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_4:117006-117256 + dps_2007 TCA-----------GAATTCATTATGCCTTCTTCACTGTGTGAAACGATTAAAAATTCCGCGTAAGTTGTAAAT--------------TAATCTAAATA------CCATCTAAATATACAA----TAATTTACGAAATATATATGTAGCGGCGGTGCAGCGATATGCGGGCGGTTGATTATGATTTTTTTTCCTACTAACTTCCACTCCACAAAAGAAGTCGAGCCATAAAATTTTGGTCCTTCGAGCCGGATCATACGAGTCTGATTTTA-----------------------------------------------------------------------------T---TTTATATATTGAGT
droPer2 scaffold_3:310231-310419 + TCA-----------GAATTCATTATGCCTTCTTCACTGTGTGAAACGATTAAAAATTCCGCGTAAGTTGTAAAT--------------TAATCTAAATA------CCATCTAAAAATACAA----TAATTTACGAAATATATATGTAGCGGCGGTGCAGCGATATGCGGGCGGTTGGTTA---TTTTTTTTCCTACTAACTTCCACTCCACAAAAGAAGTCGAGCCA-------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004961:3831098-3831155 + ATA-----------AATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGATACT-A----------------------------------------------------GCTGCTGATT--------------------------TAT---TTTGCACGTTGTGT
droAna3 scaffold_13340:6804662-6804728 - TCA-----------GA-GTCGTTATGCCTTCGTCATTGAGTGAAGCTCTTACAAATTCCTCGTAAGTTTGG-AT--------------TAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droBip1 scf7180000393144:398-464 + TCA-----------AAACATAACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGTCCTTCGAGCCGGATGC-CT----------------------------------------------------GCGTTTATTTGTGC-----------ATTTA---------------CTTTTGTG---
droKik1 scf7180000302388:964603-964682 + TCA-----------GAAGTCGTTATGCCTTCTTCCTTGTGTGAACCACATACAAGTTCTTCGTAAGTTGAGTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAACG----------------------------AAACA------------------------CC
droEle1 scf7180000491212:265436-265504 - TCA-----------GAAATCGTTATGCCTTCTTCATTGTGTGAAGCTCTCACGAATTCTTCGTAAGTTCTGAAA--------------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droRho1 scf7180000777133:9418-9488 + TCTACTTCATAAATAAACATAACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAGTC--------CGGATAC-CC----------------------------------------------------GCGTTTGATTTTG-------------------------A---GTTTCTTTGTGAAT
droBia1 scf7180000302136:1740872-1740983 - TCA-----------GGAGTCGTTATGCCTTCTTCATTGTGTGAAGCCCTCACAAATTCTTCGTAAGTTTGAAAT--------------TCATTTTTTTTATTTGTTTATATAAATATATAATTTATAATTTTCTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415658:262617-262678 - TCA-----------GGAATCGTTATGCCGTCTTCATTGTGTGAAGCGCTCACAAATTCTTCGTAAGTTTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409742:7301-7360 - ACA-----------AAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGATCTTCT----------------------------------------------------GCGTTTGAATTCG-------------------------A---GTTTATTTGTGAAT
dm3 chr3R:20941805-20941883 - TCA-----------GAAGTCGTTATGCCTTCTTCATTGTGTGAAGCTCTCACAAATTCTTCGTAAGTTTAAAAAC-------------TGCTTAAAATA------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droSim2 3r:20452133-20452242 - TCA-----------GAAGTCGTTATGCCTTCTTCATTGTGTGAAGCTCTCACAAATTCTTCGTAAGTTTAAAAACTGCAATGTATCATTAATTTATATT------TTATTAATATATTTAT----TAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droSec2 scaffold_135:41430-41516 + CAT-----------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGTCCTTCGAGCCGGATCACCGGAA-CTGCGTTTC---------------------------TTTCGGGCATTTGATTTTGATTATT-GGCCTTTTGGCAAACG------------------------AT
droYak3 3R:25554207-25554278 + TCA-----------GAAGTCGCTATGCCTTCTTCATTGTGTGAAGCTCTCACAAATTCTTCGTAAGTTATACAA--------------CAGCTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:24930380-24930495 - CAT-----------AAAAATAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGGTCCTTCGGCCCTGATCGTCAGCATCGCGTTTGATTTTCGACAGTTGGACTTATTGCAGTTTTGTAG---------------------------------ACGGTGATCTATATATTCCTATATCGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCA-----------GAATTCATTATGCCTTCTTCACTGTGTGAAACGATTAAAAATTCCGCGTAAGTTGTAAAT--------------TAATCTAAATA------CCATCTAAATATACAA----TAATTTACGAAATATATATGTAGCGGCGGTGCAGCGATATGCGGGCGGTTGATTATGATTTTTTTTCCTACTAACTTCCACTCCACAAAAGAAGTCGAGCCATAAAATTTTGGTCCTTCGAGCCGGATCATACGAGTCTGATTTTA-----------------------------------------------------------------------------T---TTTATATATTGAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGT..................................................................................................................................................27725.291770124420012440
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAG...................................................................................................................................................261120.6422701396623001070
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAA....................................................................................................................................................25117.187907510000300
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAG......................................................................................................................................................23115.095604170000710
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGA.....................................................................................................................................................24115.005505010100300
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGTC.................................................................................................................................................2871.2990800001000
.........................................................................................................................................................................................................................................................GGATCATACGAGTCTGAG...................................................................................................1811.0010100000000
..................................................................................................................................................................................................ACTAACTTCCACTCCACAAAAGAAG...................................................................................................................................................25191.001901900000000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGTA.................................................................................................................................................2871.0070700000000
..................................................................................................................................................................................................ACTAACTTCCACTCCACAAAAGAAGT..................................................................................................................................................26150.871301300000000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGC..................................................................................................................................................27110.8290090000000
................................................................................................................................................................................................CTACTAACTTCCACTCCACAAAAGAAGT..................................................................................................................................................2860.6740210001000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAA........................................................................................................................................................21120.5060600000000
.........................................................................................................................................................................................................................................................GGATCATACGAGTCTGAGG..................................................................................................1920.5010100000000
....................................................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGTCGA...............................................................................................................................................27140.4360600000000
........................................................................................................................................................................................................TTCCACTCCACAAAAGAAGTCGAGC.............................................................................................................................................25150.4060400000200
..................................................................................................................................................................................................ACTAACTTCCACTCCACAAAAG......................................................................................................................................................22190.3770700000000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGA..................................................................................................................................................27110.3640310000000
.........................................................................................................................................................................................................TCCACTCCACAAAAGAAGTCGAGC.............................................................................................................................................24150.3350500000000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAA.......................................................................................................................................................22120.3340400000000
.........................................................................................................................................................................................................TCCACTCCACAAAAGAAGTCGAGCC............................................................................................................................................25140.2130210000000
..................................................................................................................................................................................................ACTAACTTCCACTCCACAAAAGAA....................................................................................................................................................24190.2140400000000
................................................................................................................................................................................................CTACTAACTTCCACTCCACAAAAGAAG...................................................................................................................................................27100.2020110000000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAA...................................................................................................................................................26110.1820200000000
.................................................................................................................................................................................................TACTAACTTCCACTCCACA..........................................................................................................................................................19120.1720200000000
..................................................................................................................................................................................................ACTAACTTCCACTCCACAAAAGA.....................................................................................................................................................23190.1630300000000
....................................................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGTCG................................................................................................................................................26140.1420200000000
........................................................................................................................................................................................................................................TTTTGGTCCTTCGAGCCGGAT.................................................................................................................21200.1020000000020
........................................................................................................................................................................................................TTCCACTCCACAAAAGAAG...................................................................................................................................................19200.1020200000000
...................................................................................................................................................................................................CTAACTTCCACTCCACAAAAGAAG...................................................................................................................................................24200.1020200000000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAA.........................................................................................................................................................20120.0810100000000
.................................................................................................................................................................................................TACTAACTTCCACTCCAC...........................................................................................................................................................18130.0810100000000
.....................................................................................................................................................................................................AACTTCCACTCCACAAAAGAAGTCGA...............................................................................................................................................26140.0710100000000
..........................................................................................................................................................................................................CCACTCCACAAAAGAAGTCGAGC.............................................................................................................................................23150.0710100000000
...........................................................................................................................................................................................................CACTCCACAAAAGAAGTCGAGCC............................................................................................................................................23150.0710100000000
...................................................................................................................................................................................................CTAACTTCCACTCCACAAAAGAAGT..................................................................................................................................................25160.0610100000000
....................................................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGTC.................................................................................................................................................25160.0610100000000
........................................................................................................................................................................................................TTCCACTCCACAAAAGAAGTCGAG..............................................................................................................................................24160.0610100000000
....................................................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGT..................................................................................................................................................24160.0610100000000
..............................................................................................................................................................................................................TCCACAAAAGAAGTCGAGCC............................................................................................................................................20170.0610100000000
..............................................................................................................................................................................................................TCCACAAAAGAAGTCGAGCCA...........................................................................................................................................21170.0610100000000
...............................................................................................................................................................................................................CCACAAAAGAAGTCGAGC.............................................................................................................................................18180.0610100000000
.......................................................................................................................................................................................................................................ATTTTGGTCCTTCGAGCCGGATC................................................................................................................23180.0610000000010
..............................................................................................................................................................................................................TCCACAAAAGAAGTCGAGC.............................................................................................................................................19180.0610100000000
.....................................................................................................................................................................................................................................AAATTTTGGTCCTTCGAGCCGGATA................................................................................................................25180.0610000000100
......................................................................................................................................................................................................ACTTCCACTCCACAAAAGAAGT..................................................................................................................................................22190.0510100000000
.........................................................................................................................................................................................................................................TTTGGTCCTTCGAGCCGGATC................................................................................................................21200.0510000000010
..................................................................................................................................................................................................ACTAACTTCCACTCCACAAA........................................................................................................................................................20200.0510100000000
..................................................................................................................................................................................................ACTAACTTCCACTCCACAAAA.......................................................................................................................................................21200.0510100000000
......................................................................................................................................................................................................ACTTCCACTCCACAAAAGAAG...................................................................................................................................................21200.0510100000000
....................................................................................................................................................................................................TAACTTCCACTCCACAAAAGAAG...................................................................................................................................................23200.0510100000000
........................................................................................................................................................................................................................................TTTTGGTCCTTCGAGCCGGATC................................................................................................................22200.0510000000010
droPer2
TCA-----------GAATTCATTATGCCTTCTTCACTGTGTGAAACGATTAAAAATTCCGCGTAAGTTGTAAAT--------------TAATCTAAATA------CCATCTAAAAATACAA----TAATTTACGAAATATATATGTAGCGGCGGTGCAGCGATATGCGGGCGGTTGGTTA---TTTTTTTTCCTACTAACTTCCACTCCACAAAAGAAGTCGAGCCA-------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAGT..................................................................................................................................................27160.315050000
.................................................................................................................................................................................................TACTAACTTCCACTCCACAAAAGAAG...................................................................................................................................................26160.193021000
................................................................................................................................................................................................CTACTAACTTCCACTCCACA..........................................................................................................................................................20170.061010000
....................................................................................................................................................................................................TAACTTCCACTCCACAAAAGAAGTCG................................................................................................................................................26200.051010000
..............................................................................................................................................................................................................TCCACAAAAGAAGTCGAG..............................................................................................................................................18200.051010000
droWil2
ATA-----------AATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGATACT-A----------------------------------------------------GCTGCTGATT--------------------------TAT---TTTGCACGTTGTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................TTGGTCCTTCGAGCCGGATACT-.............................................................................................................22201.3026224000
..........................................................................................................................................................................................................................................TTGGTCCTTCGAGCCGGATAC...............................................................................................................21200.40806002
.................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGAT.................................................................................................................21200.25500005
.................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGATAC...............................................................................................................23200.05100001
..........................................................................................................................................................................................................................................TTGGTCCTTCGAGCCGGATA................................................................................................................20200.05100010
.................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGATA................................................................................................................22200.05101000
.................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGATACT-.............................................................................................................24200.05110000
...........................................................................................................................................................................................................................................TGGTCCTTCGAGCCGGATACT-.............................................................................................................21200.05101000
droAna3
TCA-----------GA-GTCGTTATGCCTTCGTCATTGAGTGAAGCTCTTACAAATTCCTCGTAAGTTTGG-AT--------------TAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCA-----------AAACATAACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGTCCTTCGAGCCGGATGC-CT----------------------------------------------------GCGTTTATTTGTGC-----------ATTTA---------------CTTTTGTG---SizeHit CountTotal NormTotal
No Reads
droKik1
TCA-----------GAAGTCGTTATGCCTTCTTCCTTGTGTGAACCACATACAAGTTCTTCGTAAGTTGAGTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAACG----------------------------AAACA------------------------CCSizeHit CountTotal NormTotal
No Reads
droEle1
TCA-----------GAAATCGTTATGCCTTCTTCATTGTGTGAAGCTCTCACGAATTCTTCGTAAGTTCTGAAA--------------ATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotal
No Reads
droRho1
TCTACTTCATAAATAAACATAACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAGTC--------CGGATAC-CC----------------------------------------------------GCGTTTGATTTTG-------------------------A---GTTTCTTTGTGAATSizeHit CountTotal NormTotal
No Reads
droBia1
TCA-----------GGAGTCGTTATGCCTTCTTCATTGTGTGAAGCCCTCACAAATTCTTCGTAAGTTTGAAAT--------------TCATTTTTTTTATTTGTTTATATAAATATATAATTTATAATTTTCTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCA-----------GGAATCGTTATGCCGTCTTCATTGTGTGAAGCGCTCACAAATTCTTCGTAAGTTTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACA-----------AAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTCCTTCGAGCCGGATCTTCT----------------------------------------------------GCGTTTGAATTCG-------------------------A---GTTTATTTGTGAATSizeHit CountTotal NormTotal
No Reads
dm3
TCA-----------GAAGTCGTTATGCCTTCTTCATTGTGTGAAGCTCTCACAAATTCTTCGTAAGTTTAAAAAC-------------TGCTTAAAATA------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................TTCTTCATTGTGTGAAGCTCTCACAAAT......................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCATTGTGTGAAGCTCTCACAAAT......................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTCTTCATTGTGTGAAGCTCTCAC..........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATGCCTTCTTCATTGTGTGAAGCTCTC............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTCGTTATGCCTTCTTCATTGTGT.....................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................TGAAGCTCTCACAAATTCTTC.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGCTCTCACAAATTCTTC.................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCA-----------GAAGTCGTTATGCCTTCTTCATTGTGTGAAGCTCTCACAAATTCTTCGTAAGTTTAAAAACTGCAATGTATCATTAATTTATATT------TTATTAATATATTTAT----TAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................GTTTAAAAACTGCAATGTATCAT......................................................................................................................................................................................................................................................................................2311.00100010000000000000
droSec2
CAT-----------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGTCCTTCGAGCCGGATCACCGGAA-CTGCGTTTC---------------------------TTTCGGGCATTTGATTTTGATTATT-GGCCTTTTGGCAAACG------------------------ATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................TC---------------------------TTTCGGGCATTTGATTTTGAT...............................................23100.3032010
............................................................................................................................................................................................................................................................................TTC---------------------------TTTCGGGCATTTGATTTTGAT...............................................24100.2020020
............................................................................................................................................................................................................................................................................TTC---------------------------TTTCGGGCATTTGATTTTGA................................................23110.1822000
...........................................................................................................................................................................................................................................................................................................TTCGGGCATTTGATTTTGATTATT-GGCC......................................28100.1011000
.............................................................................................................................................................................................................................................................................TC---------------------------TTTCGGGCATTTGATTTTGATTA.............................................25100.1010010
............................................................................................................................................................................................................................................................................TTC---------------------------TTTCGGGCATTTGATTTTGATTA.............................................26100.1011000
............................................................................................................................................................................................................................................................................TTC---------------------------TTTCGGGCATTTGATTTTGATTAT............................................27100.1011000
.......................................................................................................................................................................................................................................................................TGCGTTTC---------------------------TTTCGGGCATTTGATT....................................................24110.0911000
.............................................................................................................................................................................................................................................................................TC---------------------------TTTCGGGCATTTGATTT...................................................19110.0911000
..................................................................................................................................................................................................................................................................GAA-CTGCGTTTC---------------------------TTTCGGGC............................................................20110.0910010
droYak3
TCA-----------GAAGTCGCTATGCCTTCTTCATTGTGTGAAGCTCTCACAAATTCTTCGTAAGTTATACAA--------------CAGCTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAT-----------AAAAATAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGGTCCTTCGGCCCTGATCGTCAGCATCGCGTTTGATTTTCGACAGTTGGACTTATTGCAGTTTTGTAG---------------------------------ACGGTGATCTATATATTCCTATATCGTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 02:33 AM