ID:

dps_2000

 Coordinate:

Unknown_group_388:3529-3679 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.8 -40.6 -40.4

Flybase annnotation

CDS [Dpse\GA28185-cds]; exon [dpse_GLEANR_7622:1]; intron [Dpse\GA28185-in]

Repeatable elements

NameClassFamilyStrand
BilboLINELOA+
BilboLINELOA+
BilboLINELOA+
mature
  1. Unknown_singleton_870:6910-6930 -
  2. Unknown_singleton_870:14218-14238 -
  3. Unknown_group_37:227-247 -
  4. Unknown_group_67:35084-35104 -
  5. 2:25181711-25181731 +
  6. dps_2000  Unknown_group_388:3610-3630 +
  7. Unknown_group_278:5200-5220 +
  8. Unknown_group_285:12683-12703 +
  9. Unknown_group_696:7092-7112 -
  10. Unknown_group_696:15572-15592 -
  11. Unknown_group_176:987-1007 -
  12. Unknown_singleton_2553:1378-1398 -
  13. Unknown_group_652:1025-1045 -
  14. Unknown_singleton_260:153-173 -
  15. Unknown_singleton_994:189-209 -
  16. Unknown_singleton_2861:944-964 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCATTTCGGGCTCAGCTCCGTGACCATAAAGGTTTACACGTCGGATGTCGGTAAACCAGTCGAACAGAATGGTGCCTAGAAAATCGAAGTACCCGTCGACGATAAGGAGACAAGCGTGAATTCGAGGCGACCACTGTAAAGCAGCATCCGCTGCTTCTATACCCCGAATGGAAGAGAGCGGAGCGGACTGCAACAAAGCGCCTAAATATATTTTTGCTCCATAATTATAGCGATAGCGACAAACGGCGGCA
**************************************************......(((((..((((..((((((((.(((...((..((..((...........))..))...))....))).)))).))))))))......((.((((((.(((((((.......)))))))..)))))))).)))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 GSM444067
head
 SRR902011
testis
 M022
male body
.................................................................................................................................................................................................................................TATAGCGATAGCGACAAACGGC.... 22 0 1 9.00 9 9 0 0 0 0 0
.................................................................................................................................................................................................................................TATAGCGATAGCGACAAACGGCG... 23 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................................................................................................................................................TATAGCGATAGCGACAAACG...... 20 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................................................TATAGCGATAGCGACAAACGG..... 21 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................................ATACCTCGGATCGAAGAGA.......................................................................... 19 3 15 1.87 28 26 0 2 0 0 0
...................................................................................................................................CACTGTAAAGCAGCATCCGCT................................................................................................... 21 0 16 1.31 21 21 0 0 0 0 0
.....TCGGGCTCAGCTCCGTGACCATAAAGG........................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................ATAGCGATAGCGACAAACGGC.... 21 0 1 1.00 1 1 0 0 0 0 0
..........CTCAGCTCTGTGACCATAAAGGT.......................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
....TTCGGGCTTAGCTCACTGACCATA............................................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................TATAGCGATAGCGACAAACGGCGGC. 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................CTGTAAAGCAGCATCCGCTGC................................................................................................. 21 0 16 0.75 12 12 0 0 0 0 0
............................................................................................................................................................................................................................ATAATTATAGCGATAGCGACA.......... 21 0 20 0.40 8 7 0 0 1 0 0
...................................................................................................................................CACTGTAAAGCAGCATCCGC.................................................................................................... 20 0 16 0.38 6 5 0 0 0 0 1
............................................................................................................................................GCAGCATTCGCTGCTACTA............................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0
..................................................................................................................................CCACTGTAAAGCAGCATCCGC.................................................................................................... 21 0 16 0.31 5 4 1 0 0 0 0
..........................................................................................................................................................................................................................CCATAATTATAGCGATAGCGA............ 21 0 20 0.25 5 5 0 0 0 0 0
....................................................................................................................................ACTGTAAAGCAGCATCCGCTG.................................................................................................. 21 0 16 0.19 3 3 0 0 0 0 0
...................................................................................................................................CATTGTAAAGCAGCATCCGC.................................................................................................... 20 1 17 0.18 3 2 0 0 1 0 0
.................................................................................................................................ACCACTGTAAAGCAGCATCC...................................................................................................... 20 0 19 0.16 3 3 0 0 0 0 0
...........................................................................................................................................................................................................................CATAATTATAGCGATAGCGAC........... 21 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................................................................................................................TCCATAATTATAGCGATAGCG............. 21 0 20 0.15 3 0 0 0 0 3 0
............................................................................................................GATAAGCGTGAGTTCGATG............................................................................................................................ 19 3 14 0.14 2 0 0 2 0 0 0
...................................................................................................................................CATTGTAAAGCAGCATCCGCT................................................................................................... 21 1 16 0.13 2 2 0 0 0 0 0
......................................................................................................................................TGTAAAGCAGCATCCGCTGCT................................................................................................ 21 0 16 0.13 2 2 0 0 0 0 0
....................................................................................................................................ACTGTAAAGCAGCATCCGCT................................................................................................... 20 0 17 0.12 2 2 0 0 0 0 0
...........TCAGCTCTGTGACCATAAAGGT.......................................................................................................................................................................................................................... 22 1 18 0.11 2 2 0 0 0 0 0
........................................................................................................................................TAAAGCAGCATCCGCTGC................................................................................................. 18 0 19 0.11 2 2 0 0 0 0 0
..................................................................................................................................CCACTGTAAAGCAGCATCCG..................................................................................................... 20 0 19 0.11 2 2 0 0 0 0 0
........................................................................................................................................................................................................................CTCCATAATTATAGCGATAGC.............. 21 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................CCATAATTATAGCGATAGCG............. 20 0 20 0.10 2 2 0 0 0 0 0
............................................ATGGCGGTACTCCAGTCGAA........................................................................................................................................................................................... 20 3 15 0.07 1 0 0 1 0 0 0
......................................................................................................................................TGTAAAGCAGCATCCGCTGC................................................................................................. 20 0 16 0.06 1 1 0 0 0 0 0
...................................................................................................................................CACTGTAAAGCAGCATCCGCTT.................................................................................................. 22 1 16 0.06 1 1 0 0 0 0 0
.....................................................................................................................................CTGTAAAGCGGCATCCGCTGC................................................................................................. 21 1 16 0.06 1 1 0 0 0 0 0
....................................................................................................................................ACTGTAGAGCAGCATCCGCTGTT................................................................................................ 23 2 16 0.06 1 1 0 0 0 0 0
.....................................................................................................................................CTGTAAAGCAGCATCCGCTG.................................................................................................. 20 0 16 0.06 1 1 0 0 0 0 0
....................................................................................................................................ATTGTAAAGCAGCATCCGCTG.................................................................................................. 21 1 16 0.06 1 1 0 0 0 0 0
....................................................................................................................................ATTGTAAAGCAGCATCCGCT................................................................................................... 20 1 17 0.06 1 1 0 0 0 0 0
....................................................................................................................................ACTGTAAAGCAGCATCCGC.................................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0
......................................................................................................................................TGTAAATCAGCATCCGCTGCT................................................................................................ 21 1 18 0.06 1 1 0 0 0 0 0
............CAGCTCTGTGACCATAAAGGT.......................................................................................................................................................................................................................... 21 1 19 0.05 1 1 0 0 0 0 0
.........................CGAAAGGTTTACACGTCGA............................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 1 0 0
.................................................................................................................................ACCACTGTAAAGCAGCATCCG..................................................................................................... 21 0 19 0.05 1 1 0 0 0 0 0
..................................................................................................................................CCATTGTAAAGCAGCATCCG..................................................................................................... 20 1 19 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................CCATAATTATAGCGATAGCGT............ 21 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TCCATAATTATAGCGATAGC.............. 20 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GCTCCATAATTATAGCGATAG............... 21 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................CATAATTATAGCGATAGCGA............ 20 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TAATTATAGCGATAGCGACA.......... 20 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................................ATAATTATAGCGATAGCGAC........... 20 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................AATTATAGCGATAGCGACA.......... 19 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TAATTATAGCGATAGCGACAA......... 21 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGTAAAGCCCGAGTCGAGGCACTGGTATTTCCAAATGTGCAGCCTACAGCCATTTGGTCAGCTTGTCTTACCACGGATCTTTTAGCTTCATGGGCAGCTGCTATTCCTCTGTTCGCACTTAAGCTCCGCTGGTGACATTTCGTCGTAGGCGACGAAGATATGGGGCTTACCTTCTCTCGCCTCGCCTGACGTTGTTTCGCGGATTTATATAAAAACGAGGTATTAATATCGCTATCGCTGTTTGCCGCCGT
**************************************************......(((((..((((..((((((((.(((...((..((..((...........))..))...))....))).)))).))))))))......((.((((((.(((((((.......)))))))..)))))))).)))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 GSM343916
embryo
 GSM444067
head
 V112
male body		 M022
male body
..................................................................................................................................................AGGCGACGAAGATATGGGGCTTACCTT.............................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................GTCGTAGGCGACGAAGATATGGGGCT.................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................CGTAGGCGACGAAGATATGGGGCT.................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................CGACGAAGATATGGGGCTTACCTTCT............................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGAGGTATTAATATCGCTATC............... 21 0 20 0.60 12 12 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGAGGTATTAATATCGCTAT................ 20 0 20 0.60 12 10 0 0 0 2 0 0 0
........CCAAGTCGAGGCACTGGTATT.............................................................................................................................................................................................................................. 21 1 2 0.50 1 0 0 0 1 0 0 0 0
.................................................................................................................................TGGTGACATTTCGTCGTAGGC..................................................................................................... 21 0 19 0.42 8 8 0 0 0 0 0 0 0
...................................................................................................................................GTGACATTTCGTCGTAGGCGA................................................................................................... 21 0 16 0.38 6 4 0 0 0 0 1 0 1
......................................................................................................................................................................................................................ACGAGGTATTAATATCGCTAT................ 21 0 20 0.30 6 3 2 0 0 0 1 0 0
.......................................................................................................................................................................................................................CGAGGTATTAATATCGCTATCGCTGT.......... 26 0 19 0.26 5 4 0 0 0 1 0 0 0
..................................................................................................................................GGTGACATTACGTCGTAGGCG.................................................................................................... 21 1 16 0.25 4 4 0 0 0 0 0 0 0
..................................................................................................................................GGTGACATTTCGTCGTAGG...................................................................................................... 19 0 19 0.16 3 3 0 0 0 0 0 0 0
....................................................................................................................................TGACATTACGTCGTAGGCGA................................................................................................... 20 1 17 0.12 2 2 0 0 0 0 0 0 0
.................................................................................................................................TGGTGACATTTCGTCGTAGG...................................................................................................... 20 0 19 0.11 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGGTATTAATATCGCTATCGC............. 21 0 20 0.10 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GGAACGAGGTATTAATATCGCTAC................ 24 3 10 0.10 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GAGGTATTAATATCGCTGT................ 19 1 20 0.10 2 0 0 1 0 0 0 1 0
...........................................................................................................................................................................................................................GTATTAATATCGCTATCGCTG........... 21 0 20 0.10 2 2 0 0 0 0 0 0 0
..................................................................................................................................GGTGACATTTCGTCGTAGGCG.................................................................................................... 21 0 16 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................................GTGACATTTCGTCGTAGGCG.................................................................................................... 20 0 16 0.06 1 1 0 0 0 0 0 0 0
.................................................................................................................................TGGTGACATTTCGTCGTAGGCGA................................................................................................... 23 0 16 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................................GTGACATTACGTCGTAGGCGA................................................................................................... 21 1 16 0.06 1 1 0 0 0 0 0 0 0
..................................................................................................................................GGTGACATTTCGTCGTAGGC..................................................................................................... 20 0 19 0.05 1 1 0 0 0 0 0 0 0
...........AGTCGAGACACTGGTATTTCC........................................................................................................................................................................................................................... 21 1 19 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGAGGTATTAATATCGCTATCGCT............ 24 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GAGGTATTAATATCGCTATCGCTGT.......... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACGAGGTATTAATATCGCTA................. 20 0 20 0.05 1 0 0 0 0 0 0 1 0
..............................................................................................................................................TCGTAGGCGACGAGGATAT.......................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGAGGTATTAATATCGCTGT................ 20 1 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................ACGAGGTGTTAATATCGCTATC............... 22 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_388:3479-3729 + dps_2000 CCATTTCGGGCTCAGCTCCGTGACCATAAAGGTTTACACGTCGGATGT---------------------CGGTAAACCAGTCGAACAGA--------------------------------------------------------------------------------------------------------------ATGGTGCCTAGAAAATCGAAGTACCCGTCGACGATAAGGAGACAAGCGTGA-ATTCGAGGCG--------------------ACCACTGTAAAGCAGCATCCGCTGCTTCTATACCCCGAATGGAAGAGAGCGGAGCGGAC-----------------------------------------------------------------------------------------------------------------TGCAACAAAGCGCCTAAATATATTTTTGCTCCATAATTATAGCGATAGCGACAA-ACGGCGGCA
droPer2 scaffold_59:263304-263555 - CCATTTCGGGCTCAGCTCCGTGACCATAAAGGTTTACACGTCGGATGT---------------------CGGTAAACCAGTCGAACAGA--------------------------------------------------------------------------------------------------------------ATGGTGCCTAGAAAATCGAAGTACCCGTCGACGATACGGAGACAAGCGTGA-ATTCGAGGCG--------------------ACCACTGTAAAGCAGCATCCGCTGCTTCTATACCCCGCCTGGAAGAGAGCGGAGCGGAC-----------------------------------------------------------------------------------------------------------------TGCAACAAAGCGCCTAAATATATTTTTGCTCCATAATTATAGCGATAGCGACAACACGGCGGCA
droVir3 scaffold_13047:17380471-17380517 + TAATTTAGGAGTTAGTTCGGTTACCATCAAAGTTTATAAGGCTGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:17457434-17457481 + AAATTTTGGCTTCAGCTCGGTGGTCGTTAAGGTCTATAAATCAGACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14854:8915-9167 - AAATTTCGGCTTCGGCTCCATTACCGTCAAGGTATATAAATCGGATGCGCCGGCCGGAGGAGACTCTGTTATCT----------------------------------------------------------------------------------GTAACA----------------------AGACGGCTGAACAGGGTCCTCCTGCGGAAATCGGAGCAACCGATGAGGAGCTGGAGCCAGGCTATACGTCGGACACGTCGACT----GTGACTC-----------GGGG----CCTTGAGGCCTTGTGTCACGAGTTGGACGA---------------------------------------------------------------------------------------------------------------------------------------------AGACGACTTCACGCTGTCGGACGAGAACGACAGCAACAACACGGTGGTG
droAna3 scaffold_13017:43539-43837 - AAACTTCGACTTCAGCTCCGTTACCATAAAGACATACAAGTCGGACTC---------------------GGGCGGGGGAGCGAAACAGG--------------------------------CCACAACTCAGGAGGAACT-------CTGGCCTCAGAGTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTGAGGATGGAGCCGATATAGTTCAAGTCCAGGAAAGATGAATGGCAGGGGGTAGGGTTTCTGGACTAGCGACCAAGGAGTACAAGCTACTAGTAGCTAACACTGAAAGTAAAATTAGAGCCTGCATTTTATCTAAAAAGCACCTTAGCATATTTTTACTCCATAATTACAGCAACGAAGACAATGCGGCAGCC
droBip1 scf7180000395034:29820-29977 + ACGTTTCGGTCC-----------------GTATCTACAAATCCGATGC-----------------------GAAAGCCAAGCCAGGAGGT-------------------------------------------------------------------------------------------------------------ATCG-GGCTGGACGATAAGGATGTCC-TTGACGATCT------------------------------TGGAAATAAACCTCCATCACAGTAAAGCGGGGTCAGCTGCCCTCCTACTCCACCTCGCCGAGAGTGGAGCTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000488772:2378-2578 - CGAGCGCGAA--------------------------------GGGGGA---------------------CGATGAGCCGG-----------------------------------------------------AGGACGGCTATTCCATCGACGCATCGTTAAGCTGAGTGATGCAGGCGATGA---------------AGCCGGCTGTAGGAGACGACGACCTCAGTGACGATGAGGAAGCCGACGTCA-CTG-----------------GTGAACCTCCACCACAGTAAGGCAGCGTCTGCTGTTCTGCTGCTCCGCCTGTCTGACGGCGGGGCAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000766013:27329-27513 - CAACTATGGGTTCAGTGCCATACATATTAAAATATATAAAGGGGACTCTAATTCCTCGGGAAGTCCTGCCGGCAACCCAGCCGAGCAGG--------------------------------------------------------------------------------------------------------------TGCTTGCGGAGGAAGTGGAGGCCCCTGGTGT---------------------------------------------GCCTACATCACAGTAAAGCAGCGTCCGCTGCTCTTTTGCTTCGCCTGGCCAAAGGCGAAGCCGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302238:13809-13911 - GAACTTCTGCTTCAT----------GCGAAGATTTACAAGGGCGACTCCAATGCCCCTAAAAGCTCTGCCGGCAACCCAGTCGAGCAGG--------------------------------------------------------------------------------------------------------------TGCTTGCTGAGGAATTGGAAGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000410364:2273-2623 + CAACTTTGG-TTCATCGCCGTACTTATCAAAATCTATAAAGGAGACTCCAATTTCACGGAAAGCCCTGCCGGCAACCCAGCCGAGGAGGTGCTTGCGGATGAAGTGGAGGCGCCTGGTATG--------CCGAAGGACGGCTACTCAATCGACTCGTCGCTGAGCTG--------------------------------------------------------------------------------------------------------------------------GGAGCGGCATTTGATGCTCTATTGCTTCACCTGGCCGAGGGCGGAGCCGAAGTGGTCTTAGTACCGGAACCTTGGGT-----------------------------------AGTAGGAGGCATTGCTTGACCCCAATGAAGGTAAAATTCGAACCTGCATTTTAGCTAAACGGCATCTTAGTATATTTCTGGTTCGCAATTACAGCAACGGAGATAACACGGCAGTA
droSim2 node_83424:106-148 - AAACTTCGGCTTCAGCTCAGTGCCCATAAAGGTCTAAAGGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_004:777060-777286 - AAACTTTGGGTTTAGCTCAGTGACCATAAAGGTCTACAAATCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AGGCAGTGGGGGAGTGA-TCGAGGAGAT------------------------------T---------------------------------------------------------------------------------------------------------------------AGGATTAGGGAATAAGGAATATAAGCTTCTAACAGCTCCTAGCGAAGGTAAAATAAGAGCCTGCATTCTAGCCAAAAAGCACCTTAACATTTTTCTGCTCCATAATTACAGCGATGCAGACAACGCGGCAGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCATTTCGGGCTCAGCTCCGTGACCATAAAGGTTTACACGTCGGATGT---------------------CGGTAAACCAGTCGAACAGA--------------------------------------------------------------------------------------------------------------ATGGTGCCTAGAAAATCGAAGTACCCGTCGACGATAAGGAGACAAGCGTGA-ATTCGAGGCG--------------------ACCACTGTAAAGCAGCATCCGCTGCTTCTATACCCCGAATGGAAGAGAGCGGAGCGGAC-----------------------------------------------------------------------------------------------------------------TGCAACAAAGCGCCTAAATATATTTTTGCTCCATAATTATAGCGATAGCGACAA-ACGGCGGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAA-ACGGC....2219.0090900000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAA-ACGGCG...2313.0030300000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAA-ACG......2012.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAA-ACGG.....2112.0020200000000
...........................................................................................................................................................................................................................................................................................CACTGTAAAGCAGCATCCGCT.....................................................................................................................................................................................................................21161.312102100000000
.....TCGGGCTCAGCTCCGTGACCATAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCGATAGCGACAA-ACGGC....2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAA-ACGGCGGC.2511.0010100000000
.............................................................................................................................................................................................................................................................................................CTGTAAAGCAGCATCCGCTGC...................................................................................................................................................................................................................21160.751201200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATAGCGATAGCGACA...........21200.4080700010000
...........................................................................................................................................................................................................................................................................................CACTGTAAAGCAGCATCCGC......................................................................................................................................................................................................................20160.3861500000000
..........................................................................................................................................................................................................................................................................................CCACTGTAAAGCAGCATCCGC......................................................................................................................................................................................................................21160.3150400100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAATTATAGCGATAGCGA.............21200.2550500000000
............................................................................................................................................................................................................................................................................................ACTGTAAAGCAGCATCCGCTG....................................................................................................................................................................................................................21160.1930300000000
.........................................................................................................................................................................................................................................................................................ACCACTGTAAAGCAGCATCC........................................................................................................................................................................................................................20190.1630300000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATTATAGCGATAGCGAC............21200.1530300000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAATTATAGCGATAGCG..............21200.1530000000030
..............................................................................................................................................................................................................................................................................................TGTAAAGCAGCATCCGCTGCT..................................................................................................................................................................................................................21160.1320200000000
............................................................................................................................................................................................................................................................................................ACTGTAAAGCAGCATCCGCT.....................................................................................................................................................................................................................20170.1220200000000
................................................................................................................................................................................................................................................................................................TAAAGCAGCATCCGCTGC...................................................................................................................................................................................................................18190.1120200000000
..........................................................................................................................................................................................................................................................................................CCACTGTAAAGCAGCATCCG.......................................................................................................................................................................................................................20190.1120200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCATAATTATAGCGATAGC...............21200.1020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAATTATAGCGATAGCG..............20200.1020200000000
..............................................................................................................................................................................................................................................................................................TGTAAAGCAGCATCCGCTGC...................................................................................................................................................................................................................20160.0610100000000
...........................................................................................................................................................................................................................................................................................CACTGTAAAGCAGCATCCGCTT....................................................................................................................................................................................................................22160.0610100000000
.............................................................................................................................................................................................................................................................................................CTGTAAAGCAGCATCCGCTG....................................................................................................................................................................................................................20160.0610100000000
............................................................................................................................................................................................................................................................................................ACTGTAAAGCAGCATCCGC......................................................................................................................................................................................................................19170.0610100000000
.........................................................................................................................................................................................................................................................................................ACCACTGTAAAGCAGCATCCG.......................................................................................................................................................................................................................21190.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAATTATAGCGATAGCGT.............21200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAATTATAGCGATAGC...............20200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATAATTATAGCGATAG................21200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATTATAGCGATAGCGA.............20200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATAGCGATAGCGACA...........20200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATAGCGATAGCGAC............20200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATAGCGATAGCGACA...........19200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATAGCGATAGCGACAA-.........21200.0510100000000
droPer2
CCATTTCGGGCTCAGCTCCGTGACCATAAAGGTTTACACGTCGGATGT---------------------CGGTAAACCAGTCGAACAGA--------------------------------------------------------------------------------------------------------------ATGGTGCCTAGAAAATCGAAGTACCCGTCGACGATACGGAGACAAGCGTGA-ATTCGAGGCG--------------------ACCACTGTAAAGCAGCATCCGCTGCTTCTATACCCCGCCTGGAAGAGAGCGGAGCGGAC-----------------------------------------------------------------------------------------------------------------TGCAACAAAGCGCCTAAATATATTTTTGCTCCATAATTATAGCGATAGCGACAACACGGCGGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAACACGGC....23201.35270270000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAACACG......21200.204040000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCGATAGCGACAACACGGCGGC.26200.051010000
droVir3
TAATTTAGGAGTTAGTTCGGTTACCATCAAAGTTTATAAGGCTGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAATTTTGGCTTCAGCTCGGTGGTCGTTAAGGTCTATAAATCAGACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAATTTCGGCTTCGGCTCCATTACCGTCAAGGTATATAAATCGGATGCGCCGGCCGGAGGAGACTCTGTTATCT----------------------------------------------------------------------------------GTAACA----------------------AGACGGCTGAACAGGGTCCTCCTGCGGAAATCGGAGCAACCGATGAGGAGCTGGAGCCAGGCTATACGTCGGACACGTCGACT----GTGACTC-----------GGGG----CCTTGAGGCCTTGTGTCACGAGTTGGACGA---------------------------------------------------------------------------------------------------------------------------------------------AGACGACTTCACGCTGTCGGACGAGAACGACAGCAACAACACGGTGGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AAACTTCGACTTCAGCTCCGTTACCATAAAGACATACAAGTCGGACTC---------------------GGGCGGGGGAGCGAAACAGG--------------------------------CCACAACTCAGGAGGAACT-------CTGGCCTCAGAGTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTGAGGATGGAGCCGATATAGTTCAAGTCCAGGAAAGATGAATGGCAGGGGGTAGGGTTTCTGGACTAGCGACCAAGGAGTACAAGCTACTAGTAGCTAACACTGAAAGTAAAATTAGAGCCTGCATTTTATCTAAAAAGCACCTTAGCATATTTTTACTCCATAATTACAGCAACGAAGACAATGCGGCAGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACGTTTCGGTCC-----------------GTATCTACAAATCCGATGC-----------------------GAAAGCCAAGCCAGGAGGT-------------------------------------------------------------------------------------------------------------ATCG-GGCTGGACGATAAGGATGTCC-TTGACGATCT------------------------------TGGAAATAAACCTCCATCACAGTAAAGCGGGGTCAGCTGCCCTCCTACTCCACCTCGCCGAGAGTGGAGCTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGAGCGCGAA--------------------------------GGGGGA---------------------CGATGAGCCGG-----------------------------------------------------AGGACGGCTATTCCATCGACGCATCGTTAAGCTGAGTGATGCAGGCGATGA---------------AGCCGGCTGTAGGAGACGACGACCTCAGTGACGATGAGGAAGCCGACGTCA-CTG-----------------GTGAACCTCCACCACAGTAAGGCAGCGTCTGCTGTTCTGCTGCTCCGCCTGTCTGACGGCGGGGCAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAACTATGGGTTCAGTGCCATACATATTAAAATATATAAAGGGGACTCTAATTCCTCGGGAAGTCCTGCCGGCAACCCAGCCGAGCAGG--------------------------------------------------------------------------------------------------------------TGCTTGCGGAGGAAGTGGAGGCCCCTGGTGT---------------------------------------------GCCTACATCACAGTAAAGCAGCGTCCGCTGCTCTTTTGCTTCGCCTGGCCAAAGGCGAAGCCGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GAACTTCTGCTTCAT----------GCGAAGATTTACAAGGGCGACTCCAATGCCCCTAAAAGCTCTGCCGGCAACCCAGTCGAGCAGG--------------------------------------------------------------------------------------------------------------TGCTTGCTGAGGAATTGGAAGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAACTTTGG-TTCATCGCCGTACTTATCAAAATCTATAAAGGAGACTCCAATTTCACGGAAAGCCCTGCCGGCAACCCAGCCGAGGAGGTGCTTGCGGATGAAGTGGAGGCGCCTGGTATG--------CCGAAGGACGGCTACTCAATCGACTCGTCGCTGAGCTG--------------------------------------------------------------------------------------------------------------------------GGAGCGGCATTTGATGCTCTATTGCTTCACCTGGCCGAGGGCGGAGCCGAAGTGGTCTTAGTACCGGAACCTTGGGT-----------------------------------AGTAGGAGGCATTGCTTGACCCCAATGAAGGTAAAATTCGAACCTGCATTTTAGCTAAACGGCATCTTAGTATATTTCTGGTTCGCAATTACAGCAACGGAGATAACACGGCAGTASizeHit CountTotal NormTotal
No Reads
droSim2
AAACTTCGGCTTCAGCTCAGTGCCCATAAAGGTCTAAAGGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droYak3
AAACTTTGGGTTTAGCTCAGTGACCATAAAGGTCTACAAATCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AGGCAGTGGGGGAGTGA-TCGAGGAGAT------------------------------T---------------------------------------------------------------------------------------------------------------------AGGATTAGGGAATAAGGAATATAAGCTTCTAACAGCTCCTAGCGAAGGTAAAATAAGAGCCTGCATTCTAGCCAAAAAGCACCTTAACATTTTTCTGCTCCATAATTACAGCGATGCAGACAACGCGGCAGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCATAATTACAGCGATGCAT..............24200.9018000000000018
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCATAATTACAGCGATGCAGA.............25200.6513013000000000
....TTTGGGTTTAGCTCAGTGACCATAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50101000000000
...................................ACAAATCGGACTCCG---------------------CCAA----------GGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.40824000020000
......................ACCATAAAGGTCTACAAATCGGACTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.33300000000003
..............................................TCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AGGCAGT..............................................................................................................................................................................................................................................................................................................27190.16302100000000
...................................ACAAATCGGACTCCG---------------------CCAA----------GGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15303000000000
.............................AGGTCTACAAATCGGACTCCG---------------------CCAA----------GGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2880.13101000000000
..............................GGTCTACAAATCGGACTCCG---------------------CCAA----------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13101000000000
........................................TCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-.....................................................................................................................................................................................................................................................................................................................26200.10202000000000
.........GTTTAGCTCAGTGACCATAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000000000
........................................TCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-A....................................................................................................................................................................................................................................................................................................................27200.10200000000002
..............................................TCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AGGCAG...............................................................................................................................................................................................................................................................................................................26200.10202000000000
.............................AGGTCTACAAATCGGACTCCG---------------------CC............................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.09101000000000
.............................AGGTCTACAAATCGGACTCCG---------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.09101000000000
..................................TACAAATCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------AT............................................................................................................................................................................................................................................................................................................................27110.09101000000000
..................................TACAAATCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATC...........................................................................................................................................................................................................................................................................................................................28110.09101000000000
..........................TAAAGGTCTACAAATCGGACTCCG---------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09101000000000
..............................................TCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AGGCAGTG.............................................................................................................................................................................................................................................................................................................28190.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCATAATTACAGCGATGCCT..............24200.05100000000001
...........................................GACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AG...................................................................................................................................................................................................................................................................................................................25200.05100000000001
..............................................TCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AGGCA................................................................................................................................................................................................................................................................................................................25200.05101000000000
....................................CAAATCGGACTCCG---------------------CCAA----------GG..............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.......................................................................CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GGA-AGGCAGTG.............................................................................................................................................................................................................................................................................................................24200.05101000000000
.............AGCTCAGTGACCATAAAGGTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
...................................ACAAATCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................24200.05101000000000
........................................TCGGACTCCG---------------------CCAA----------GGAGG-------------------------------------------------------------------------------------------------------------ATCA-GG.......................................................................................................................................................................................................................................................................................................................25200.05101000000000

Generated: 05/18/2015 at 02:31 AM