ID:

dps_199

 Coordinate:

Unknown_group_264:25381-25429 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.6 -28.3 -28.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. Unknown_group_144:937-959 -
  2. Unknown_group_89:4702-4724 -
  3. Unknown_group_783:448-470 -
  4. dps_199  Unknown_group_264:25407-25429 +
  5. Unknown_group_266:341-363 +
  6. Unknown_group_283:3019-3041 +
  7. Unknown_group_126:2207-2229 -
  8. Unknown_group_278:6850-6872 -
  9. XL_group1a:553753-553775 -
  10. Unknown_group_71:22578-22600 +
  11. Unknown_singleton_1864:1609-1631 +
  12. Unknown_singleton_692:583-605 +
  13. Unknown_singleton_3750:115-137 +
  14. dps_203  Unknown_group_327:5218-5240 +
  15. Unknown_group_219:13694-13716 -
  16. Unknown_singleton_175:1860-1882 -
  17. Unknown_singleton_528:1300-1322 -
  18. Unknown_singleton_188:695-717 -
  19. Unknown_group_504:4201-4223 -
  20. Unknown_singleton_3116:545-567 +
  21. Unknown_group_368:691-713 +
  22. Unknown_group_390:11611-11633 +
  23. Unknown_singleton_2568:872-894 +
  24. Unknown_singleton_3595:1097-1119 +
  25. Unknown_singleton_612:634-656 +
star

Sense Strand Reads

ATGGTCTCAATGCAAAAACGGAACGCATCGCTGTGTGCATGTGCAGCTGCGGGTCTAGCCATGCGTGTGAGAACATTACAGCTATGTTCTGGACCCGAGCAATAACAACACAGCTATGCGCGTAAAACTAGCTTCTTAAGCGGTGCAAT
***********************************.((.((((..(((.(((((((((.(((((.(((((.....))))))).)))..))))))))))))........))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 SRR902011
testis
 GSM343916
embryo
 V112
male body		 M062
head
 M022
male body
............................................................................TACAGCTATGTTCTGGACCCGAGC................................................. 24 0 2 27.50 55 35 12 5 2 0 1 0 0
............................................................................TACAGCTATGTTCTGGACCCGAG.................................................. 23 0 20 15.30 306 232 12 54 0 3 2 3 0
............................................................................TACAGCTATGCTCTGGACCCGAGC................................................. 24 1 5 12.60 63 6 57 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGA................................................... 22 0 20 11.90 238 209 15 10 3 1 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGAGCA................................................ 25 0 2 4.50 9 7 1 0 1 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCG.................................................... 21 0 20 4.20 84 73 1 3 5 0 0 1 1
.......CAATGCAAAAACGGAACGCATCGCTG.................................................................................................................... 26 0 7 3.71 26 24 1 1 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATCGC...................................................................................................................... 24 0 7 2.57 18 18 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGAGCAA............................................... 26 0 2 2.50 5 3 0 1 0 0 1 0 0
............................................................................TACAGCTATGTTCTGGACCC..................................................... 20 0 20 1.95 39 30 8 0 0 0 0 1 0
.......CAATGCAAAAACGGAACGCATCG....................................................................................................................... 23 0 7 1.71 12 8 0 4 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATCGCT..................................................................................................................... 25 0 7 1.57 11 10 1 0 0 0 0 0 0
......TCAATGCAAAAACGGAACGCATCGCTG.................................................................................................................... 27 0 6 1.33 8 7 0 1 0 0 0 0 0
........AATGCAAAAACGGAACGCATCGCTG.................................................................................................................... 25 0 7 1.29 9 9 0 0 0 0 0 0 0
......TCAATGCAAAAACGGAACGCATCGC...................................................................................................................... 25 0 6 1.00 6 6 0 0 0 0 0 0 0
.............................................................................ACAGCTATGTTCTGGACCCGAGC................................................. 23 0 2 1.00 2 2 0 0 0 0 0 0 0
..................................................................................................................TGTGCGCGTAAAACTAGCTTCTTAAG......... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACC...................................................... 19 0 20 0.80 16 13 3 0 0 0 0 0 0
.............................................................................ACAGCTATGTTCTGGACCCGA................................................... 21 0 20 0.75 15 15 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATC........................................................................................................................ 22 0 7 0.71 5 5 0 0 0 0 0 0 0
......................................................................................................TAACAACACAGCTATGCGCGTAAAAC..................... 26 0 9 0.67 6 6 0 0 0 0 0 0 0
............................................................................TGCAGCTATGCTCTGGACCCGAGC................................................. 24 2 5 0.60 3 0 3 0 0 0 0 0 0
............................................................................TAAAGCTATGCTCTGGACCCGAGC................................................. 24 2 5 0.60 3 0 3 0 0 0 0 0 0
............................................................................TACTGCTATGCTCTGGACCCGAGC................................................. 24 2 5 0.60 3 0 3 0 0 0 0 0 0
..........................................................................ATTACAGCTATGTTCTGGACCCGAGC................................................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0
............................................................................TACAGCTATGATCTGGACCCGAGC................................................. 24 1 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................AGCTAGCTTCTTAAGTGGT..... 19 2 2 0.50 1 0 0 0 0 1 0 0 0
................................................................................GCTATGTTCTGGACCCGAGC................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................TACTGCTATGTTCTGGACCCGAGC................................................. 24 1 2 0.50 1 0 1 0 0 0 0 0 0
............................................................................TAAAGCTATGTTCTGGACCCGAGC................................................. 24 1 2 0.50 1 0 1 0 0 0 0 0 0
........AATGCAAAAACGGAACGCATCGCT..................................................................................................................... 24 0 7 0.43 3 3 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATCGCGG.................................................................................................................... 26 1 7 0.43 3 3 0 0 0 0 0 0 0
............................................................................TACAGCTCTGCTCTGGACCCGAGC................................................. 24 2 5 0.40 2 0 2 0 0 0 0 0 0
...........................................................................TTACAGCTATGCTCTGGACCCGAGC................................................. 25 1 5 0.40 2 0 2 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGT................................................... 22 1 20 0.35 7 7 0 0 0 0 0 0 0
.............................................................................ACAGCTATGTTCTGGACCCG.................................................... 20 0 20 0.35 7 7 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGAGA................................................. 24 1 20 0.35 7 0 2 5 0 0 0 0 0
......TCAATGCAAAAACGGAACGCATCG....................................................................................................................... 24 0 6 0.33 2 2 0 0 0 0 0 0 0
....TCTCAATGCAAAAACGGAACGCATCGC...................................................................................................................... 27 0 6 0.33 2 2 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGC........................................................................................................................... 19 0 7 0.29 2 0 0 2 0 0 0 0 0
..........TGCAAAAACGGAACGCATCGCTGTG.................................................................................................................. 25 0 7 0.29 2 0 0 0 2 0 0 0 0
.......CAATGCAAAAACGGAACGCATCGCGGTG.................................................................................................................. 28 1 7 0.29 2 2 0 0 0 0 0 0 0
.................................................................TGTGAGAACATTACAGCTATGTT............................................................. 23 0 20 0.25 5 4 0 0 0 1 0 0 0
......................................................................................................TAACAACACAGCTATGCGCGTA......................... 22 0 20 0.25 5 4 1 0 0 0 0 0 0
.......................................................................................................AACAACACAGCTATGCGCGTAAAAC..................... 25 0 9 0.22 2 2 0 0 0 0 0 0 0
............................................................................TACAGCTATGCTCTGCACCCGAGC................................................. 24 2 5 0.20 1 1 0 0 0 0 0 0 0
............................................................................TAAAGCTATGCTCTGGACCCGAGCA................................................ 25 2 5 0.20 1 0 0 0 0 1 0 0 0
..........................................................................ATTACAGCTATGCTCTGGACCCGAGC................................................. 26 1 5 0.20 1 0 1 0 0 0 0 0 0
............................................................................TTCAGCTATGCTCTGGACCCGAGC................................................. 24 2 5 0.20 1 0 0 0 0 1 0 0 0
...........................................................................................................................AACACTAGCTTCTTAA.......... 16 1 5 0.20 1 0 0 1 0 0 0 0 0
............................................................................TAGAGCTATGCTCTGGACCCGAGC................................................. 24 2 5 0.20 1 0 1 0 0 0 0 0 0
............................................................................TACAGCTATGCTCTAGACCCGAGC................................................. 24 2 5 0.20 1 0 1 0 0 0 0 0 0
............................................................................GACAGCTATGCTCTGGACCCGAGC................................................. 24 2 5 0.20 1 0 1 0 0 0 0 0 0
............................................................................TACAGTTATGCTCTGGACCCGAGC................................................. 24 2 5 0.20 1 0 1 0 0 0 0 0 0
..........................................................................ATTACAGCTATGTTCTGGACCCGA................................................... 24 0 20 0.20 4 1 0 2 1 0 0 0 0
...........................................................................TTACAGCTATGTTCTGGACCCGAG.................................................. 24 0 20 0.20 4 3 0 1 0 0 0 0 0
............................................................................TACAGCTATGTGCTGGACCCGAG.................................................. 23 1 20 0.20 4 3 1 0 0 0 0 0 0
............................................................................TACAGCTATGCTCTGGACCCAAGC................................................. 24 2 5 0.20 1 0 1 0 0 0 0 0 0
......TCAATGCAAAAACGGAACGCAT......................................................................................................................... 22 0 6 0.17 1 0 1 0 0 0 0 0 0
......TCAATGCAAAAACGGAACGCATC........................................................................................................................ 23 0 6 0.17 1 1 0 0 0 0 0 0 0
....TCTCAATGCAAAAACGGAACGCATCGCTG.................................................................................................................... 29 0 6 0.17 1 1 0 0 0 0 0 0 0
......TCATTGCAAAAACGGAACGCATCGCC..................................................................................................................... 26 2 6 0.17 1 0 1 0 0 0 0 0 0
......TCAATGCAAAAACGGAACGCATCGCGG.................................................................................................................... 27 1 6 0.17 1 1 0 0 0 0 0 0 0
......TCAATGCAAAAACGGAACGCATCGCT..................................................................................................................... 26 0 6 0.17 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGAC.................................................. 23 1 20 0.15 3 0 3 0 0 0 0 0 0
............................................................................TATAGCTATGTTCTGGACCCGAG.................................................. 23 1 20 0.15 3 0 0 3 0 0 0 0 0
...........................................................................TTACAGCTATGTTCTGGACCCGA................................................... 23 0 20 0.15 3 2 0 0 1 0 0 0 0
............................................................................TGCAGCTATGTTCTGGACCCGA................................................... 22 1 20 0.15 3 2 1 0 0 0 0 0 0
............................................................................TACAGCTATGATCTGGACCCGA................................................... 22 1 20 0.15 3 1 1 0 0 1 0 0 0
........AATGCAAAAACGGAGCGCATCGCTG.................................................................................................................... 25 1 7 0.14 1 1 0 0 0 0 0 0 0
..........TGCAAAAACGGAACGCATCGCGGTG.................................................................................................................. 25 1 7 0.14 1 1 0 0 0 0 0 0 0
............CAAAAACGGAACGCATCGCTGTG.................................................................................................................. 23 0 7 0.14 1 1 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATCAC...................................................................................................................... 24 1 7 0.14 1 1 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGCGTCGCT..................................................................................................................... 25 1 7 0.14 1 1 0 0 0 0 0 0 0
..........................................................................................................AACACAGCTATGCGCGTAAAACTAGC................. 26 0 7 0.14 1 1 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATCGCTA.................................................................................................................... 26 1 7 0.14 1 1 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATCGCC..................................................................................................................... 25 1 7 0.14 1 0 1 0 0 0 0 0 0
.......CAATGCAAAAACGGTACACATCGAT..................................................................................................................... 25 3 7 0.14 1 0 0 1 0 0 0 0 0
........AATGCAAAAACGGAACGCATCGCTA.................................................................................................................... 25 1 7 0.14 1 1 0 0 0 0 0 0 0
.......CAATGCAAAAACGGAACGCATCGCTGT................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0 0 0 0
........AATGCAAAAACGGAACGCATCGCGG.................................................................................................................... 25 1 7 0.14 1 1 0 0 0 0 0 0 0
...........GCAAAAACGGAACGCATCGCC..................................................................................................................... 21 1 8 0.13 1 0 1 0 0 0 0 0 0
.........................................................................................................CAACACAGCTATGCGCGTAAAACTA................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0
......................................................................................................TAACAACACAGCTATGCGCGTAAAACT.................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0
...........................................................................................................................AAAACTAGCTTCTTAAATGGTC.... 22 3 9 0.11 1 0 0 0 0 1 0 0 0
............................................................................TACAGCTATGTTCTGGAC....................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0 0
................................................................................GCTATGTTCTGGACCCGAG.................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0 0
.........................................................................................................CAACACAGCTATGCGCGTAAAA...................... 22 0 20 0.10 2 0 0 0 1 0 1 0 0
.................................................................TGTGAGAACATTACAGCTATG............................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0
......................................................................................................TAACAACACAGCTATGCGCGTAAA....................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGAA.................................................. 23 1 20 0.10 2 2 0 0 0 0 0 0 0
...............................................................................AGCTATGTTCTGGACCCGAG.................................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0
.......................................................................................................AACAACACAGCTATGCGCGT.......................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0
..........................................................................ATTACAGCTATGTTCTGGACCCGAG.................................................. 25 0 20 0.10 2 0 0 0 2 0 0 0 0
...GTCTCAATGCAGTTACGGAA.............................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0
.............................................................................................................................GACTAGCTTCTTATGTGGT..... 19 3 11 0.09 1 0 0 0 0 1 0 0 0
.............................................................................................................................AACTAGCTTCTTAAATGGTT.... 20 3 15 0.07 1 0 0 0 0 1 0 0 0
.................ACGGAACGCATCGCTGTGTGC............................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................ACAGCTATGTTCTGGACCCGAA.................................................. 22 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCA..................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................ATTACAGCTATGTTCTGGACCC..................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................ATTACAGCTATGTTCTGGACCCG.................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................................................TAACAACACAGCTATGCGCGTAAAA...................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................AACAGCTATGTGCTGGATCCGAG.................................................. 23 3 20 0.05 1 0 0 0 0 1 0 0 0
.............................................................................ACAGCTATGTTCTGGACCC..................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TGCAGCTATGTTCTGGACCC..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................ATTACAGCTATGTTCTGGACC...................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0
................AACGGAACGCATCGCTGTGTG................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................AGCTATGTTCTGGACCCGA................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TAAAGCTATGTTCTGGACCCGA................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0
....................................................................GAGAACATTACAGCTATGTTCTGGACC...................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0
...................................................................TGAGAACATTACAGCTATGTTCTGGACC...................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................TGTTCTGGACCCGAGAAAAA............................................. 20 2 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TGCAGCTATGTTCTGGACCCGAC.................................................. 23 2 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................................CAACACAGCTATGCACGTAAAA...................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0
...................GGAACGCATCGCTGTGTG................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGATCTGGACCCG.................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCCCGACCCGAG.................................................. 23 2 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................AGCAATAACAACACAGCTATGCGCG........................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................GCAATAACAACACAGCTATGCGCGTAA........................ 27 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCCGGACCCGA................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................TAACAACACAGCTATGCGCGTAAG....................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................AACGAGCTTCTTAAATGGT..... 19 3 20 0.05 1 0 0 0 0 1 0 0 0
........................................................................................................ACAACACAGCTATGCGCGTAAAA...................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGG................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TGCAGCTATGTTCTGGACCCG.................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0
...................................................................TGAGAACATTACAGCTATGT.............................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................CTACAGCTATGTTCTGGACCCGA................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGAGG................................................. 24 1 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................TAAAGCTATGTTCTGGACCCGAG.................................................. 23 1 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................TACAGCTATGATCTGGACCC..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................AATACAGCTATGTTCTGGACCCGA................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGAGCCG.................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................GTGAGAACATTACAGCTATGTTC............................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGATCTGGACCCGAG.................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................CAGCTATGTTCTGGACCCGAG.................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................TACAGCTATGTTCTGGACCCGAGAA................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................GTGAGAACATTACAGCTATGTT............................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................CATTACAGCTATGTTCTGGACCCGAG.................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................TGTGAGAACATTACAGCTATGT.............................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................CTACAGCTATGTTCTGGACCCGAG.................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................CGCTACAGCTATGTTCTGGACCCGAG.................................................. 26 2 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................TACAGGTATGTTCTGGACCCGA................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TACCAGAGTTACGTTTTTGCCTTGCGTAGCGACACACGTACACGTCGACGCCCAGATCGGTACGCACACTCTTGTAATGTCGATACAAGACCTGGGCTCGTTATTGTTGTGTCGATACGCGCATTTTGATCGAAGAATTCGCCACGTTA
***********************************.((.((((..(((.(((((((((.(((((.(((((.....))))))).)))..))))))))))))........))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 M059
embryo
 SRR902010
ovaries
 GSM343916
embryo
...............................................................GCACACTCTTGTAATGTCGATAC............................................................... 23 0 20 3.35 67 0 67 0 0 0
.............................................................ACGCACACTCTTGTAATGTCGATA................................................................ 24 0 20 2.85 57 56 0 1 0 0
............................................................TACGCACACTCTTGTAATGTCGATAC............................................................... 26 0 20 1.95 39 39 0 0 0 0
...............................................................GCACACTCTTGTAATGTCGATA................................................................ 22 0 20 1.80 36 35 1 0 0 0
.........................................................CGGTACGCACACTCTTGTAATGTCGAT................................................................. 27 0 20 1.40 28 4 24 0 0 0
..............................................GACGCCCAGATCGGTACGCACACTCT............................................................................. 26 0 1 1.00 1 1 0 0 0 0
.................TGCCTTGCGTAGCGACACACGT.............................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
..............................................................CGCACACTCTTGTAATGTCGAT................................................................. 22 0 20 0.70 14 0 14 0 0 0
..................................................................CACTCTTGTAATGTCGATAC............................................................... 20 0 20 0.55 11 11 0 0 0 0
.............................................................ACGCACACTCTTGTAATGTCGAT................................................................. 23 0 20 0.55 11 11 0 0 0 0
............................................................TACGCACACTCTTGTAATGTCGAT................................................................. 24 0 20 0.55 11 0 11 0 0 0
....................................................CAGATCGGTAAGCACACTTTGGTAAT....................................................................... 26 3 2 0.50 1 1 0 0 0 0
..............................................................AGCACACTCTTGTAATGTCGATAC............................................................... 24 1 20 0.50 10 10 0 0 0 0
...........................................................GTACGCACACTCTTGTAATGTCGAT................................................................. 25 0 20 0.40 8 3 5 0 0 0
.......................................................ATTGGTACGCACACTCTTGT.......................................................................... 20 1 3 0.33 1 1 0 0 0 0
................................................................CACACTCTTGTAATGTCGATA................................................................ 21 0 20 0.25 5 5 0 0 0 0
..................................................................CACTCTTGTAATGTCGATA................................................................ 19 0 20 0.20 4 4 0 0 0 0
......................................................................................................ATTGTTGTGTCGATACGCGCATT........................ 23 0 20 0.15 3 3 0 0 0 0
.............................................................ACGCACACTCTTGTAATGTCGA.................................................................. 22 0 20 0.15 3 3 0 0 0 0
............................................................CACGCACACTCTTGTAATGTCGATAC............................................................... 26 1 20 0.15 3 1 0 2 0 0
.......GTTACGTTTTTGCCTTGCGTA......................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0
..............TTTTGCCTTGCGTAGCGACACA................................................................................................................. 22 0 7 0.14 1 1 0 0 0 0
..........................................................................................................TTGTGTCGATACGCGCATTTTG..................... 22 0 9 0.11 1 1 0 0 0 0
.........................................................................................................GTTGTGTCGATACGCGCATTTTG..................... 23 0 9 0.11 1 1 0 0 0 0
.................................................................ACACTCTTGTAATGTCGATACAAGACCT........................................................ 28 0 20 0.10 2 2 0 0 0 0
..............................................................CGCACACTCTTGTAATGTCGATGC............................................................... 24 1 20 0.10 2 0 0 2 0 0
.............................................................ACGCACACTCTTGTAATGTCGATACAAG............................................................ 28 0 20 0.10 2 2 0 0 0 0
..............................................................CGCACACTCTTGTAATGTCGATA................................................................ 23 0 20 0.10 2 0 0 0 0 2
.........................................................CGGTACGCACACTCTTGTAATGTCGA.................................................................. 26 0 20 0.10 2 2 0 0 0 0
..............................................................CGCACACCCTTGTAATGTCGATAC............................................................... 24 1 20 0.10 2 2 0 0 0 0
..............................................................CGCACGCTCTTGTAATGTCGATAC............................................................... 24 1 20 0.10 2 2 0 0 0 0
....................................................................................................TTATTGTTGTGTCGATACGCGCAT......................... 24 0 20 0.10 2 0 0 2 0 0
..CCAGAGTTGCGCTTTCGCCT............................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
..............................................................CGCACACTCTTGTAATGTCG................................................................... 20 0 20 0.05 1 1 0 0 0 0
..............................................................CGCACACTCTTGTCATGTCGATAC............................................................... 24 1 20 0.05 1 0 0 0 1 0
......................................................................................................ATTGTTGTGTCGATACGCGCATTT....................... 24 0 20 0.05 1 1 0 0 0 0
..............................................................CGCACACTATTGTAATGTCGATAC............................................................... 24 1 20 0.05 1 0 0 0 0 1
.....................................................................................................GATTGTTGTGTCGATACGCGCAT......................... 23 1 20 0.05 1 1 0 0 0 0
..............................................................CGCACACTCTTGTAATGTCGAAAC............................................................... 24 1 20 0.05 1 0 0 0 1 0
..............................................................CGCACACTCTTGTAATGTCGGT................................................................. 22 1 20 0.05 1 0 1 0 0 0
..............................................................CGCACACTCTTGTAACGTCGATAC............................................................... 24 1 20 0.05 1 1 0 0 0 0
..........................................................GGTACGCACACTCTTGTAATGTCGA.................................................................. 25 0 20 0.05 1 0 0 1 0 0
..............................................................CGCACACTCTTGTAATGTCGTTAC............................................................... 24 1 20 0.05 1 0 0 1 0 0
...................................................................................................GTTATTGTTGTGTCGATACGCGCATT........................ 26 0 20 0.05 1 0 1 0 0 0
...............................................................GCCCACTCTTGTAATGTCGATAC............................................................... 23 1 20 0.05 1 1 0 0 0 0
......................................................................CTTGTAATGTCGATACAAGACCT........................................................ 23 0 20 0.05 1 0 0 1 0 0
..........................................................GGTACGCACACTCTTGTAATGTCG................................................................... 24 0 20 0.05 1 0 1 0 0 0
..............................................................CGCACAATCTTGTAATGTCGAT................................................................. 22 1 20 0.05 1 0 0 0 0 1
..............................................................CGCACACTCTTGTAATGTCGATAT............................................................... 24 1 20 0.05 1 0 1 0 0 0
..............................................................CGCACACTCTTGTAATGACGATAC............................................................... 24 1 20 0.05 1 0 0 0 1 0
..............................................................CGCACACTCTTGTAATGTC.................................................................... 19 0 20 0.05 1 0 0 0 1 0
.............................................................CCGCACACTCTTGTAATGTCGATAC............................................................... 25 1 20 0.05 1 1 0 0 0 0
...............................................................................................GCTCGTTATTGTTGTGTCGATAC............................... 23 0 20 0.05 1 1 0 0 0 0
.............................................................ACGCACACTCTTCTAATGTCGATAC............................................................... 25 1 20 0.05 1 1 0 0 0 0
..............................................................CCCACACTCTTGTAATGTCGATAC............................................................... 24 1 20 0.05 1 0 1 0 0 0
......................................................................................................ATTGTTGTGTCGATACGCGCAT......................... 22 0 20 0.05 1 1 0 0 0 0
......................................................................CTTGTAATGTCGATACAAGACCTGGGCT................................................... 28 0 20 0.05 1 0 0 1 0 0
..........................................................................................................TTGTGTCGATACGCGCATTT....................... 20 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_264:25331-25479 + dps_199 ATGGTCTCAATGCAAAAACGGAACGCATCGCTGTGTGCATGTGCAGCTGCGGGTCTAGCCATGCGTGTGAGAACATTACAGCTATGTTCTGGACCCGAGCAATAACAACACAGCTATGCGCGTAAAACTAGCTTCTTAAGCGGTGCAAT
droPer2 scaffold_101:28719-28867 - ACGGTCTCAATGCAAAAACGGAACGCATCGCTGTGTGCATGTGCAGCTGCGGGTCTAGCCATGCGTGTGAGAACATTACAGCTATGTTCTGGACCCGAGCAATAACAACACAGCTATGCGCGTAAAACTAGCTTCTTAAGCGGTGCAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATGGTCTCAATGCAAAAACGGAACGCATCGCTGTGTGCATGTGCAGCTGCGGGTCTAGCCATGCGTGTGAGAACATTACAGCTATGTTCTGGACCCGAGCAATAACAACACAGCTATGCGCGTAAAACTAGCTTCTTAAGCGGTGCAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................TACAGCTATGTTCTGGACCCGAGC.................................................24227.5055035120001520
............................................................................TACAGCTATGTTCTGGACCCGAG..................................................232015.3030602321233025400
............................................................................TACAGCTATGTTCTGGACCCGA...................................................222011.9023802091501001030
............................................................................TACAGCTATGTTCTGGACCCGAGCA................................................2524.5090710000010
............................................................................TACAGCTATGTTCTGGACCCG....................................................21204.208417311000350
.......CAATGCAAAAACGGAACGCATCGCTG....................................................................................................................2673.712602410000100
.......CAATGCAAAAACGGAACGCATCGC......................................................................................................................2472.571801800000000
............................................................................TACAGCTATGTTCTGGACCCGAGCAA...............................................2622.5050300001100
............................................................................TACAGCTATGTTCTGGACCC.....................................................20201.953903081000000
.......CAATGCAAAAACGGAACGCATCG.......................................................................................................................2371.71120800000400
.......CAATGCAAAAACGGAACGCATCGCT.....................................................................................................................2571.571101010000000
......TCAATGCAAAAACGGAACGCATCGCTG....................................................................................................................2761.3380700000100
........AATGCAAAAACGGAACGCATCGCTG....................................................................................................................2571.2990900000000
......TCAATGCAAAAACGGAACGCATCGC......................................................................................................................2561.0060600000000
.............................................................................ACAGCTATGTTCTGGACCCGAGC.................................................2321.0020200000000
............................................................................TACAGCTATGTTCTGGACC......................................................19200.801601330000000
.............................................................................ACAGCTATGTTCTGGACCCGA...................................................21200.751501500000000
.......CAATGCAAAAACGGAACGCATC........................................................................................................................2270.7150500000000
......................................................................................................TAACAACACAGCTATGCGCGTAAAAC.....................2690.6760600000000
..........................................................................ATTACAGCTATGTTCTGGACCCGAGC.................................................2620.5010010000000
................................................................................GCTATGTTCTGGACCCGAGC.................................................2020.5010100000000
........AATGCAAAAACGGAACGCATCGCT.....................................................................................................................2470.4330300000000
............................................................................TACAGCTATGTTCTGGACCCGT...................................................22200.3570700000000
.............................................................................ACAGCTATGTTCTGGACCCG....................................................20200.3570700000000
............................................................................TACAGCTATGTTCTGGACCCGAGA.................................................24200.3570020000500
......TCAATGCAAAAACGGAACGCATCG.......................................................................................................................2460.3320200000000
....TCTCAATGCAAAAACGGAACGCATCGC......................................................................................................................2760.3320200000000
.......CAATGCAAAAACGGAACGC...........................................................................................................................1970.2920000000200
..........TGCAAAAACGGAACGCATCGCTGTG..................................................................................................................2570.2920000000020
.................................................................TGTGAGAACATTACAGCTATGTT.............................................................23200.2550400100000
......................................................................................................TAACAACACAGCTATGCGCGTA.........................22200.2550410000000
.......................................................................................................AACAACACAGCTATGCGCGTAAAAC.....................2590.2220200000000
..........................................................................ATTACAGCTATGTTCTGGACCCGA...................................................24200.2040100000210
...........................................................................TTACAGCTATGTTCTGGACCCGAG..................................................24200.2040300000100
......TCAATGCAAAAACGGAACGCAT.........................................................................................................................2260.1710010000000
......TCAATGCAAAAACGGAACGCATC........................................................................................................................2360.1710100000000
....TCTCAATGCAAAAACGGAACGCATCGCTG....................................................................................................................2960.1710100000000
......TCAATGCAAAAACGGAACGCATCGCT.....................................................................................................................2660.1710100000000
............................................................................TACAGCTATGTTCTGGACCCGAC..................................................23200.1530030000000
...........................................................................TTACAGCTATGTTCTGGACCCGA...................................................23200.1530200000010
............CAAAAACGGAACGCATCGCTGTG..................................................................................................................2370.1410100000000
..........................................................................................................AACACAGCTATGCGCGTAAAACTAGC.................2670.1410100000000
.......CAATGCAAAAACGGAACGCATCGCTA....................................................................................................................2670.1410100000000
.......CAATGCAAAAACGGAACGCATCGCC.....................................................................................................................2570.1410010000000
........AATGCAAAAACGGAACGCATCGCTA....................................................................................................................2570.1410100000000
.......CAATGCAAAAACGGAACGCATCGCTGT...................................................................................................................2770.1410100000000
...........GCAAAAACGGAACGCATCGCC.....................................................................................................................2180.1310010000000
.........................................................................................................CAACACAGCTATGCGCGTAAAACTA...................2590.1110100000000
......................................................................................................TAACAACACAGCTATGCGCGTAAAACT....................2790.1110100000000
............................................................................TACAGCTATGTTCTGGAC.......................................................18200.1020200000000
................................................................................GCTATGTTCTGGACCCGAG..................................................19200.1020200000000
.........................................................................................................CAACACAGCTATGCGCGTAAAA......................22200.1020000001010
.................................................................TGTGAGAACATTACAGCTATG...............................................................21200.1020200000000
......................................................................................................TAACAACACAGCTATGCGCGTAAA.......................24200.1020200000000
............................................................................TACAGCTATGTTCTGGACCCGAA..................................................23200.1020200000000
...............................................................................AGCTATGTTCTGGACCCGAG..................................................20200.1020200000000
.......................................................................................................AACAACACAGCTATGCGCGT..........................20200.1020200000000
..........................................................................ATTACAGCTATGTTCTGGACCCGAG..................................................25200.1020000000020
.................ACGGAACGCATCGCTGTGTGC...............................................................................................................21200.0510100000000
.............................................................................ACAGCTATGTTCTGGACCCGAA..................................................22200.0510100000000
............................................................................TACAGCTATGTTCTGGACCA.....................................................20200.0510100000000
..........................................................................ATTACAGCTATGTTCTGGACCC.....................................................22200.0510100000000
..........................................................................ATTACAGCTATGTTCTGGACCCG....................................................23200.0510000000010
......................................................................................................TAACAACACAGCTATGCGCGTAAAA......................25200.0510100000000
.............................................................................ACAGCTATGTTCTGGACCC.....................................................19200.0510100000000
..........................................................................ATTACAGCTATGTTCTGGACC......................................................21200.0510010000000
................AACGGAACGCATCGCTGTGTG................................................................................................................21200.0510100000000
...............................................................................AGCTATGTTCTGGACCCGA...................................................19200.0510100000000
....................................................................GAGAACATTACAGCTATGTTCTGGACC......................................................27200.0510001000000
...................................................................TGAGAACATTACAGCTATGTTCTGGACC......................................................28200.0510100000000
...................GGAACGCATCGCTGTGTG................................................................................................................18200.0510100000000
.................................................................................................AGCAATAACAACACAGCTATGCGCG...........................25200.0510100000000
..................................................................................................GCAATAACAACACAGCTATGCGCGTAA........................27200.0510100000000
......................................................................................................TAACAACACAGCTATGCGCGTAAG.......................24200.0510100000000
........................................................................................................ACAACACAGCTATGCGCGTAAAA......................23200.0510000000010
............................................................................TACAGCTATGTTCTGGACCCGG...................................................22200.0510100000000
...................................................................TGAGAACATTACAGCTATGT..............................................................20200.0510100000000
............................................................................TACAGCTATGTTCTGGACCCGAGG.................................................24200.0510000000010
..................................................................GTGAGAACATTACAGCTATGTTC............................................................23200.0510100000000
..............................................................................CAGCTATGTTCTGGACCCGAG..................................................21200.0510100000000
..................................................................GTGAGAACATTACAGCTATGTT.............................................................22200.0510100000000
.........................................................................CATTACAGCTATGTTCTGGACCCGAG..................................................26200.0510100000000
.................................................................TGTGAGAACATTACAGCTATGT..............................................................22200.0510100000000
droPer2
ACGGTCTCAATGCAAAAACGGAACGCATCGCTGTGTGCATGTGCAGCTGCGGGTCTAGCCATGCGTGTGAGAACATTACAGCTATGTTCTGGACCCGAGCAATAACAACACAGCTATGCGCGTAAAACTAGCTTCTTAAGCGGTGCAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......TCAATGCAAAAACGGAACGCATCGCTG....................................................................................................................2760.674040000
............................................................................TACAGCTATGTTCTGGACCCGAGCA................................................2560.503030000
......TCAATGCAAAAACGGAACGCATCGCT.....................................................................................................................2680.252020000
......TCAATGCAAAAACGGAACGCATCG.......................................................................................................................2480.252020000
.....CTCAATGCAAAAACGGAACGCATCGCTG....................................................................................................................2860.171010000
............................................................................TACAGCTATGTTCTGGACCCGAGC.................................................2460.171010000
.......CAATGCAAAAACGGAACGCATCGCTG....................................................................................................................2660.171010000
....TCTCAATGCAAAAACGGAACGCATCGCTG....................................................................................................................2960.171010000
........AATGCAAAAACGGAACGCATCGCTG....................................................................................................................2560.171010000
......TCAATGCAAAAACGGAACGCATC........................................................................................................................2380.131010000
......TCAATGCAAAAACGGAACGCA..........................................................................................................................2190.111010000
............................................................................TACAGCTATGTTCTGGACCCGAG..................................................23200.102020000
..........................................................................ATTACAGCTATGTTCTGGACCCGA...................................................24200.051010000

Generated: 05/15/2015 at 03:03 PM