dps_1931

intron [Dpse\GA28699-in]; CDS [Dpse\GA28699-cds]; CDS [Dpse\GA28699-cds]; exon [dpse_GLEANR_8805:2]; exon [dpse_GLEANR_8805:1]

##################################################-----------------------------------################################################## CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACGCCGAAGCCGTGCAGG ************************************************.....(((((.((((......))))..))).))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902010 ovaries	SRR902011 testis	GSM343916 embryo	V112 male body	M059 embryo	M022 male body
......................................................GCTTGGACTAGGGGAAACTGG............................................................	21	1	7	5.29	37	31	6	0	0	0	0	0
..............................................................TAGGAGAAACTGGGACTGTAGAGG.................................................	24	0	9	4.33	39	1	15	23	0	0	0	0
......................................................GCTTGGACTAGGAGAAACTGGGAA.........................................................	24	1	1	3.00	3	3	0	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGG...........................................................	22	1	6	3.00	18	17	0	0	1	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTG.......................................................	23	0	11	3.00	33	23	10	0	0	0	0	0
............................................................................................................ATTCATCGCACGCCGAAGCCG......	21	0	1	3.00	3	3	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGT......................................................	24	0	10	1.80	18	7	11	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGGA..........................................................	23	1	6	1.67	10	10	0	0	0	0	0	0
..............................................................TAGGAGAAACTGGGACTGTAGAG..................................................	23	0	10	1.30	13	0	1	12	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGGAC.........................................................	24	1	6	1.17	7	7	0	0	0	0	0	0
.................CCCGCAGGAAGCACGAGCTGCAGA..............................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
......................................................GCTTGGACTAGGAGAAACTGGG...........................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACT........................................................	22	0	11	1.00	11	5	3	3	0	0	0	0
......................................................GCTTGGACTAGGAGAAACTGGGAC.........................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................CTGGGACTGTAGAGGATCTACGGA........................................	24	0	1	1.00	1	0	1	0	0	0	0	0
...........TAGCGTCCCGCAGGAAGCACGAGC....................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
..................CCGCAGGAAGCACGAGCTGCAGA..............................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGTAG....................................................	26	0	10	0.90	9	2	7	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTG.............................................................	20	1	7	0.86	6	6	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGAC.........................................................	21	0	12	0.83	10	4	6	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGA..........................................................	20	0	12	0.67	8	1	5	1	0	1	0	0
..................................................................AGAAACTGGGACTGTAGAGG.................................................	20	0	9	0.56	5	0	0	5	0	0	0	0
.........................................................TGGACTAGGAGAAACTGG............................................................	18	0	12	0.50	6	2	4	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGGACTCT......................................................	27	2	6	0.50	3	0	3	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGTAGT...................................................	27	1	9	0.44	4	0	4	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGGACT........................................................	25	1	6	0.33	2	2	0	0	0	0	0	0
..............................................................TAGGAGAAACTGGGACTGTAGAGGA................................................	25	0	9	0.33	3	0	3	0	0	0	0	0
.......................................................CTTGGACTAGGGGAAACTGGGA..........................................................	22	1	6	0.33	2	2	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGTA.....................................................	25	0	10	0.30	3	0	3	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACT..............................................................	19	1	7	0.29	2	2	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTC.......................................................	23	1	11	0.27	3	0	0	3	0	0	0	0
..............................................................TAGGAGAAACTGAGACTGTAGAGG.................................................	24	1	9	0.22	2	0	0	2	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGTAGA...................................................	27	0	9	0.22	2	2	0	0	0	0	0	0
...................................................................GAAACTGGGACTGTAGAGG.................................................	19	0	14	0.21	3	0	0	3	0	0	0	0
..................................................GTGAGATTGGAATTGGAGAAA................................................................	21	3	5	0.20	1	1	0	0	0	0	0	0
................................................................GGAGAAACTGGGACTGTAGAG..................................................	21	0	10	0.20	2	0	0	2	0	0	0	0
.......................................................CTTGGACTAGGGGAAACTGGGAC.........................................................	23	1	6	0.17	1	1	0	0	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGAC.........................................................	22	0	12	0.17	2	2	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGG..........................................................	20	1	12	0.17	2	0	0	2	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGG...........................................................	19	0	12	0.17	2	1	1	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGGACTG.......................................................	26	1	6	0.17	1	1	0	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGGAA.........................................................	24	2	6	0.17	1	1	0	0	0	0	0	0
.......................................................CTTGGACTAGGGGAAACTGG............................................................	20	1	7	0.14	1	1	0	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGCTCT........................................................	25	3	7	0.14	1	0	1	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAAC...............................................................	18	1	7	0.14	1	1	0	0	0	0	0	0
......................................................GCTTGGACTAGGGGAAACTGGTAA.........................................................	24	3	7	0.14	1	1	0	0	0	0	0	0
..................................................................AGAAACTGGGACTGTAGAGGA................................................	21	0	9	0.11	1	0	0	1	0	0	0	0
.............................................................CTAGGAGAAACTGGGACTGTAGAGG.................................................	25	0	9	0.11	1	0	0	1	0	0	0	0
.................................................................GAGAAACTGGGACTGTAGAGG.................................................	21	0	9	0.11	1	0	0	1	0	0	0	0
..................................................................AGAAACTGGGACTGTAGAG..................................................	19	0	10	0.10	1	0	0	1	0	0	0	0
..........................................................GGACTAGGAGAAACTGGGACTGTA.....................................................	24	0	10	0.10	1	1	0	0	0	0	0	0
...................................................................................................GATCACCGCATTCATCGCACG...............	21	0	20	0.10	2	2	0	0	0	0	0	0
...........................................................GACTAGGAGAAACTGGGACTGTAG....................................................	24	0	10	0.10	1	0	1	0	0	0	0	0
...............................................................AGGAGAAACTGGGACTGTA.....................................................	19	0	11	0.09	1	0	0	1	0	0	0	0
..........................................................GGACTAGGAGAAACTGGGACT........................................................	21	0	11	0.09	1	1	0	0	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGACTG.......................................................	24	0	11	0.09	1	1	0	0	0	0	0	0
..........................................................GGACTAGGAGAAACTGGGACTG.......................................................	22	0	11	0.09	1	1	0	0	0	0	0	0
......................................................GGCTGGACTAGGAGAAACTGGGA..........................................................	23	2	12	0.08	1	0	0	0	0	0	1	0
......................................................GGTTGGACTAGGAGAAACTGGGAC.........................................................	24	1	12	0.08	1	0	0	0	0	0	1	0
........................................................TTGGACTAGGAGAAACTGG............................................................	19	0	12	0.08	1	1	0	0	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGA..........................................................	21	0	12	0.08	1	1	0	0	0	0	0	0
..........................................................GGACTAGGAGAAACTGGGA..........................................................	19	0	12	0.08	1	1	0	0	0	0	0	0
.......................................................................CTGGGACTGTGGAGGCTC..............................................	18	2	12	0.08	1	0	0	0	0	0	0	1
.........................................................................................TACGGAGCCGGATCACCGCATTCATCGC..................	28	0	12	0.08	1	0	0	1	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGG...........................................................	20	0	12	0.08	1	1	0	0	0	0	0	0
........................................................................................CTACGGAGCCGGATCACCG............................	19	0	13	0.08	1	1	0	0	0	0	0	0
........................................................................................CTGCGGAGCCGGATCGCCGC...........................	20	2	13	0.08	1	0	0	0	0	1	0	0
.........................................................................................TACGGAGCCGGATCACCGCA..........................	20	0	13	0.08	1	0	0	0	0	1	0	0
...............................GAGCTGCAGAGCCTGGAT......................................................................................	18	1	14	0.07	1	1	0	0	0	0	0	0
..............................................................................................AGCCGGATCACCGCATTCATCGCAC................	25	0	15	0.07	1	1	0	0	0	0	0	0
..............CGTCACGCCGGTAGCACG.......................................................................................................	18	3	19	0.05	1	0	0	0	1	0	0	0
.ATCCGCTGGATAGCGTCCCGCAGG..............................................................................................................	24	0	19	0.05	1	1	0	0	0	0	0	0
CATCCGCTGGATAGCGTCCCGCAGG..............................................................................................................	25	0	19	0.05	1	1	0	0	0	0	0	0
.....................................................................................................TCACCGCATTCATCGCACGCC.............	21	0	20	0.05	1	1	0	0	0	0	0	0
......CTGGATAGCGTCCCGCAGGA.............................................................................................................	20	0	20	0.05	1	1	0	0	0	0	0	0
..............................CGCGCTGCACAGCTTGGCT......................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0
.......................................................................CTGGGACTGTCGATGTTCT.............................................	19	3	20	0.05	1	0	0	0	1	0	0	0
.................................................................................................CGGATCACCGCATTCATCGCAC................	22	0	20	0.05	1	1	0	0	0	0	0	0
..TCCGCTGGATAGCGTCCCGCAGG..............................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0	0

##################################################-----------------------------------##################################################
CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACGCCGAAGCCGTGCAGG
**************************************************.....(((((.((((......))))..))).))..**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M040
female body

SRR902010
ovaries

SRR902011
testis

GSM343916
embryo

V112
male body

M059
embryo

M022
male body

......................................................GCTTGGACTAGGGGAAACTGG............................................................

5.29

..............................................................TAGGAGAAACTGGGACTGTAGAGG.................................................

4.33

......................................................GCTTGGACTAGGAGAAACTGGGAA.........................................................

3.00

......................................................GCTTGGACTAGGGGAAACTGGG...........................................................

3.00

.........................................................TGGACTAGGAGAAACTGGGACTG.......................................................

3.00

............................................................................................................ATTCATCGCACGCCGAAGCCG......

3.00

.........................................................TGGACTAGGAGAAACTGGGACTGT......................................................

1.80

......................................................GCTTGGACTAGGGGAAACTGGGA..........................................................

1.67

..............................................................TAGGAGAAACTGGGACTGTAGAG..................................................

1.30

......................................................GCTTGGACTAGGGGAAACTGGGAC.........................................................

1.17

.................CCCGCAGGAAGCACGAGCTGCAGA..............................................................................................

1.00

......................................................GCTTGGACTAGGAGAAACTGGG...........................................................

1.00

.........................................................TGGACTAGGAGAAACTGGGACT........................................................

1.00

......................................................GCTTGGACTAGGAGAAACTGGGAC.........................................................

1.00

.......................................................................CTGGGACTGTAGAGGATCTACGGA........................................

1.00

...........TAGCGTCCCGCAGGAAGCACGAGC....................................................................................................

1.00

..................CCGCAGGAAGCACGAGCTGCAGA..............................................................................................

1.00

.........................................................TGGACTAGGAGAAACTGGGACTGTAG....................................................

0.90

......................................................GCTTGGACTAGGGGAAACTG.............................................................

0.86

.........................................................TGGACTAGGAGAAACTGGGAC.........................................................

0.83

.........................................................TGGACTAGGAGAAACTGGGA..........................................................

0.67

..................................................................AGAAACTGGGACTGTAGAGG.................................................

0.56

.........................................................TGGACTAGGAGAAACTGG............................................................

0.50

......................................................GCTTGGACTAGGGGAAACTGGGACTCT......................................................

0.50

.........................................................TGGACTAGGAGAAACTGGGACTGTAGT...................................................

0.44

......................................................GCTTGGACTAGGGGAAACTGGGACT........................................................

0.33

..............................................................TAGGAGAAACTGGGACTGTAGAGGA................................................

0.33

.......................................................CTTGGACTAGGGGAAACTGGGA..........................................................

0.33

.........................................................TGGACTAGGAGAAACTGGGACTGTA.....................................................

0.30

......................................................GCTTGGACTAGGGGAAACT..............................................................

0.29

.........................................................TGGACTAGGAGAAACTGGGACTC.......................................................

0.27

..............................................................TAGGAGAAACTGAGACTGTAGAGG.................................................

0.22

.........................................................TGGACTAGGAGAAACTGGGACTGTAGA...................................................

0.22

...................................................................GAAACTGGGACTGTAGAGG.................................................

0.21

..................................................GTGAGATTGGAATTGGAGAAA................................................................

0.20

................................................................GGAGAAACTGGGACTGTAGAG..................................................

0.20

.......................................................CTTGGACTAGGGGAAACTGGGAC.........................................................

0.17

........................................................TTGGACTAGGAGAAACTGGGAC.........................................................

0.17

.........................................................TGGACTAGGAGAAACTGGGG..........................................................

0.17

.........................................................TGGACTAGGAGAAACTGGG...........................................................

0.17

......................................................GCTTGGACTAGGGGAAACTGGGACTG.......................................................

0.17

......................................................GCTTGGACTAGGGGAAACTGGGAA.........................................................

0.17

.......................................................CTTGGACTAGGGGAAACTGG............................................................

0.14

......................................................GCTTGGACTAGGGGAAACTGGCTCT........................................................

0.14

......................................................GCTTGGACTAGGGGAAAC...............................................................

0.14

......................................................GCTTGGACTAGGGGAAACTGGTAA.........................................................

0.14

..................................................................AGAAACTGGGACTGTAGAGGA................................................

0.11

.............................................................CTAGGAGAAACTGGGACTGTAGAGG.................................................

0.11

.................................................................GAGAAACTGGGACTGTAGAGG.................................................

0.11

..................................................................AGAAACTGGGACTGTAGAG..................................................

0.10

..........................................................GGACTAGGAGAAACTGGGACTGTA.....................................................

0.10

...................................................................................................GATCACCGCATTCATCGCACG...............

0.10

...........................................................GACTAGGAGAAACTGGGACTGTAG....................................................

0.10

...............................................................AGGAGAAACTGGGACTGTA.....................................................

0.09

..........................................................GGACTAGGAGAAACTGGGACT........................................................

0.09

........................................................TTGGACTAGGAGAAACTGGGACTG.......................................................

0.09

..........................................................GGACTAGGAGAAACTGGGACTG.......................................................

0.09

......................................................GGCTGGACTAGGAGAAACTGGGA..........................................................

0.08

......................................................GGTTGGACTAGGAGAAACTGGGAC.........................................................

0.08

........................................................TTGGACTAGGAGAAACTGG............................................................

0.08

........................................................TTGGACTAGGAGAAACTGGGA..........................................................

0.08

..........................................................GGACTAGGAGAAACTGGGA..........................................................

0.08

.......................................................................CTGGGACTGTGGAGGCTC..............................................

0.08

.........................................................................................TACGGAGCCGGATCACCGCATTCATCGC..................

0.08

........................................................TTGGACTAGGAGAAACTGGG...........................................................

0.08

........................................................................................CTACGGAGCCGGATCACCG............................

0.08

........................................................................................CTGCGGAGCCGGATCGCCGC...........................

0.08

.........................................................................................TACGGAGCCGGATCACCGCA..........................

0.08

...............................GAGCTGCAGAGCCTGGAT......................................................................................

0.07

..............................................................................................AGCCGGATCACCGCATTCATCGCAC................

0.07

..............CGTCACGCCGGTAGCACG.......................................................................................................

0.05

.ATCCGCTGGATAGCGTCCCGCAGG..............................................................................................................

0.05

CATCCGCTGGATAGCGTCCCGCAGG..............................................................................................................

0.05

.....................................................................................................TCACCGCATTCATCGCACGCC.............

0.05

......CTGGATAGCGTCCCGCAGGA.............................................................................................................

0.05

..............................CGCGCTGCACAGCTTGGCT......................................................................................

0.05

.......................................................................CTGGGACTGTCGATGTTCT.............................................

0.05

.................................................................................................CGGATCACCGCATTCATCGCAC................

0.05

..TCCGCTGGATAGCGTCCCGCAGG..............................................................................................................

0.05

GTAGGCGACCTATCGCAGGGCGTCCTTCGTGCTCGACGTCTCGGACCGATCACTCGAACCTGATCCTCTTTGACCCTGACATCTCCTAGATGCCTCGGCCTAGTGGCGTAAGTAGCGTGCGGCTTCGGCACGTCC ************************************************.....(((((.((((......))))..))).))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902010 ovaries	V112 male body	M059 embryo	GSM343916 embryo	M062 head	SRR902011 testis
...............................................................................................CGGCCTAGTGGCGTAAGTAGCGT.................	23	0	16	13.63	218	195	15	2	3	2	0	1
..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGT.................	24	0	15	8.40	126	112	11	1	1	1	0	0
.........................................CGGACCGATCACTCGAACCTGATCCT....................................................................	26	0	1	8.00	8	8	0	0	0	0	0	0
................................................................................................GGCCTAGTGGCGTAAGTAGCGT.................	22	0	20	7.70	154	147	7	0	0	0	0	0
.............................................................................................CTCGGCCTAGTGGCGTAAGTAGCGT.................	25	0	14	5.64	79	76	0	2	1	0	0	0
.......................................CTCGGACCGATCACTCGAACCTGAT.......................................................................	25	0	1	4.00	4	4	0	0	0	0	0	0
...............................................................................................CGGCCTAGTGGCGTAAGTAGCGTG................	24	0	16	2.06	33	33	0	0	0	0	0	0
.................................................................................................GCCTAGTGGCGTAAGTAGCGT.................	21	0	20	2.05	41	37	0	1	0	3	0	0
......................................TCTCGGACCGATCACTCGAACCTGAT.......................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0
..........................................GGACCGATCACTCGAACCTGATCCT....................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0
.........................................CGGACCGATCACTCGAACCTGAT.......................................................................	23	0	1	2.00	2	2	0	0	0	0	0	0
............................................................................................CCTCGGCCTAGTGGCGTAAGTAGCGT.................	26	0	14	1.86	26	25	1	0	0	0	0	0
..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGTG................	25	0	15	1.40	21	18	1	2	0	0	0	0
................................................................................................GGCCTAGTGGCGTAAGTAGCGTG................	23	0	20	1.10	22	20	1	0	0	1	0	0
...............................................................................................CGGCCTAGTGGCGTAAGTAGCGTGCGGCT...........	29	0	1	1.00	1	0	1	0	0	0	0	0
............................................ACCGATCACTCGAACCTGATCCT....................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
.............CGCAGGGCGTCCTTCGTGCTCGACGT................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
..............................GCTCGACGTCTCGGACCGATCACTCG...............................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................CCTGACATCTCCTAGATGCCTCGGC....................................	25	0	1	1.00	1	1	0	0	0	0	0	0
........................................TCGGACCGATCACTCGAACCTGAT.......................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
.............CGCAGGGCGTCCTTCGTGCTCGAC..................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
.........................................CGGACCGATCACTCGAACCTGATCC.....................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................CGGCCTAGTGGCGTAAGTAGCG..................	22	0	16	0.94	15	12	3	0	0	0	0	0
..............................................................................................TCGGCCTAGTGGCGTAAGTAGCG..................	23	0	15	0.93	14	14	0	0	0	0	0	0
.....CGACCTATCGCAGGGCGTCCTT............................................................................................................	22	0	20	0.85	17	17	0	0	0	0	0	0
...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAGCGT.................	27	0	13	0.69	9	9	0	0	0	0	0	0
................................................................................................GGCCTAGTGGCGTAAGTAGCG..................	21	0	20	0.65	13	13	0	0	0	0	0	0
...GGCGACCTATCGCAGGGCGTCCTT............................................................................................................	24	0	20	0.55	11	11	0	0	0	0	0	0
....................................................................................CCTAGATGCCTCGGCCTAGTGGCGT..........................	25	0	6	0.50	3	3	0	0	0	0	0	0
GTAGGCGACCTATCGCAGGGCGTCCTT............................................................................................................	27	0	19	0.47	9	9	0	0	0	0	0	0
...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAG....................	24	0	13	0.46	6	6	0	0	0	0	0	0
GTAGGCGACCTATCGCAGGGCGT................................................................................................................	23	0	20	0.45	9	8	0	1	0	0	0	0
.............................................................................................CTCGGCCTAGTGGCGTAAGTAGCG..................	24	0	14	0.43	6	6	0	0	0	0	0	0
GTAGGCGACCTATCGCAGGGCGTCCT.............................................................................................................	26	0	19	0.42	8	8	0	0	0	0	0	0
..AGGCGACCTATCGCAGGGCGTCCTT............................................................................................................	25	0	20	0.40	8	8	0	0	0	0	0	0
.................................................................................................GCCTAGTGGCGTAAGTAGCGTG................	22	0	20	0.40	8	8	0	0	0	0	0	0
...................................................................................................CTAGTGGCGTAAGTAGCGT.................	19	0	20	0.40	8	7	0	0	0	1	0	0
.............................................................................................TTCGGCCTAGTGGCGTAAGTAGCGT.................	25	1	16	0.38	6	6	0	0	0	0	0	0
.....................................................................................CTAGATGCCTCGGCCTAGTGGCGT..........................	24	0	6	0.33	2	2	0	0	0	0	0	0
................................................................CCTCTTTGACCCTGACATCTCCT................................................	23	0	9	0.33	3	3	0	0	0	0	0	0
......GACCTATCGCAGGGCGTCCTT............................................................................................................	21	0	20	0.30	6	6	0	0	0	0	0	0
.................................................................CTCTTTGACCCTGACATCTCCT................................................	22	0	9	0.22	2	2	0	0	0	0	0	0
.................................................................................................GCCTAGTGGCGTAAGTAGCG..................	20	0	20	0.20	4	4	0	0	0	0	0	0
.............................................................................................ATCGGCCTAGTGGCGTAAGTAGCGT.................	25	1	15	0.20	3	3	0	0	0	0	0	0
...........................................................CTGATCCTCTTTGACCCTGACA......................................................	22	0	10	0.20	2	1	0	0	0	1	0	0
...............................................................................................CGGCTTAGTGGCGTAAGTAGCGT.................	23	1	16	0.19	3	3	0	0	0	0	0	0
..................................................................................CTCCTAGATGCCTCGGCCTAGTGGCGT..........................	27	0	6	0.17	1	1	0	0	0	0	0	0
................................................................................................GGCCTAGTGGCGTAAGTAG....................	19	0	20	0.15	3	3	0	0	0	0	0	0
..................................................................................................CCTAGTGGCGTAAGTAGCGTG................	21	0	20	0.15	3	3	0	0	0	0	0	0
.....CGACCTATCGCAGGGCGTCCT.............................................................................................................	21	0	20	0.15	3	2	0	0	1	0	0	0
.............................................................................................CTCGGCCTAGTGGCGTAAGTAGCGTG................	26	0	14	0.14	2	2	0	0	0	0	0	0
............................................................................................CCTCGGCCTAGTGGCGTAAGTAGCG..................	25	0	14	0.14	2	2	0	0	0	0	0	0
...........................................................................................GCCTCGGCCTAGTGGCGTAAGT......................	22	0	14	0.14	2	1	0	1	0	0	0	0
..............................................................................................TCGGCCTAGTGGCGTAAGTAG....................	21	0	15	0.13	2	2	0	0	0	0	0	0
...............................................................................................CGGCCTAGTGGCGTAAGTAGATT.................	23	2	16	0.13	2	0	0	0	2	0	0	0
...............................................................................................CGGCCTAGTGGCGTAAGTAGCGTGC...............	25	0	16	0.13	2	2	0	0	0	0	0	0
............................................................TGATCCTCTTTGACCCTGACATCTCC.................................................	26	0	9	0.11	1	1	0	0	0	0	0	0
...............................................................TCCTCTTTGGCCCTGACATCTCCT................................................	24	1	9	0.11	1	1	0	0	0	0	0	0
................................................................CCTCTTTGACCCTGACATCTCC.................................................	22	0	9	0.11	1	1	0	0	0	0	0	0
.......................................................................CAGCCTGACATCTTCTAG..............................................	18	3	20	0.10	2	0	2	0	0	0	0	0
...................................................................................................CTAGTGGCGTAAGTAGCGTG................	20	0	20	0.10	2	2	0	0	0	0	0	0
...................................................................................AACTAGATGCCTCGGCCT..................................	18	2	10	0.10	1	0	1	0	0	0	0	0
...................................................................................................ATAGTGGCGTAAGTAGCGT.................	19	1	20	0.10	2	2	0	0	0	0	0	0
............................................................TGATCCTCTTTGACCTTGACATCTCCT................................................	27	1	10	0.10	1	1	0	0	0	0	0	0
................................................................................................GGCCTAGTGGCGTAAGTAGCGTGC...............	24	0	20	0.10	2	2	0	0	0	0	0	0
..........................................................................................TGCCTCGGCCTAGTGGCGTAAGTAG....................	25	0	12	0.08	1	1	0	0	0	0	0	0
..........................................................................................TGCCTCGGCCTAGTGGCGTAAGTAGCGT.................	28	0	12	0.08	1	1	0	0	0	0	0	0
...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAGC...................	25	0	13	0.08	1	1	0	0	0	0	0	0
...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAGCG..................	26	0	13	0.08	1	1	0	0	0	0	0	0
...........................................................................................GCCTCGGCCTAGTGGCGTAAGTA.....................	23	0	14	0.07	1	1	0	0	0	0	0	0
............................................................................................CCTCGGCCTAGTAGCGTAAGTAGCGT.................	26	1	14	0.07	1	1	0	0	0	0	0	0
.............................................................................................CTCGGCCTAGTGGCGTAAGTAG....................	22	0	14	0.07	1	1	0	0	0	0	0	0
............................................................................................CCTCGGCCTAGTGGCGTAAGTAGCGTGC...............	28	0	14	0.07	1	1	0	0	0	0	0	0
.............................................................................................CTCGGCCTAGTGGCGTAAGTAGC...................	23	0	14	0.07	1	1	0	0	0	0	0	0
..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGCGC...............	26	1	15	0.07	1	1	0	0	0	0	0	0
..............................................................................................TCGGCCTAGTGGCGTAAGTAGC...................	22	0	15	0.07	1	1	0	0	0	0	0	0
.............................................................................................ATCGGCCTAGTGGCGTAAGTAGCG..................	24	1	15	0.07	1	1	0	0	0	0	0	0
..............................................................................................TCGACCTAGTGGCGTAAGTAGCGT.................	24	1	15	0.07	1	1	0	0	0	0	0	0
..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGTGC...............	26	0	15	0.07	1	1	0	0	0	0	0	0
.............................................................................................CTCGGCCTAGTGGCGTAAGTA.....................	21	0	15	0.07	1	1	0	0	0	0	0	0
..............................................................................................TCGGCTTAGTGGCGTAAGTAGCGT.................	24	1	15	0.07	1	1	0	0	0	0	0	0
..............................................................................................TCGGCCTAGTGGCGTAAATAGCG..................	23	1	16	0.06	1	1	0	0	0	0	0	0
..............................................................................................ACGGCCTAGTGGCGTAAGTAGCGT.................	24	1	16	0.06	1	1	0	0	0	0	0	0
..............................................................................................CCGGCCTAGTGGCGTAAGTAGCGTG................	25	1	16	0.06	1	0	0	0	0	0	1	0
...............................................................................................CGGCCTAGTGGCGTAAGTAGC...................	21	0	16	0.06	1	1	0	0	0	0	0	0
...............................................................................................CGGCCTATTGGCGTAAGTAGCGT.................	23	1	16	0.06	1	1	0	0	0	0	0	0
...............................................................................................CGGCCCAGTGGCGTAAGTAGCGT.................	23	1	16	0.06	1	0	1	0	0	0	0	0
...............................................................................................CGGCCTAGCGGCGTAAGTAGCGT.................	23	1	16	0.06	1	1	0	0	0	0	0	0
...............................................................................................CGGCCTAGTGGCGTAAGTAGCTT.................	23	1	16	0.06	1	0	0	0	1	0	0	0
...............................................................................................CGGCCTAGTGGCGTAAGTATCG..................	22	1	16	0.06	1	1	0	0	0	0	0	0
..............................................................................................ACGGCCTAGTGGCGTAAGTAGCGTG................	25	1	16	0.06	1	1	0	0	0	0	0	0
...............................................................................................CGGCCTAGTGGTGTAAGTAGCGT.................	23	1	16	0.06	1	0	0	1	0	0	0	0
................................................................................................GGCCTAGTGGCGTAAGTAGTCTG................	23	2	20	0.05	1	0	0	0	1	0	0	0
..AGGCGACCTATCGCAGGGCGTCCTTC...........................................................................................................	26	0	20	0.05	1	1	0	0	0	0	0	0
.................................................................................................CCCTAGTGGCGTAAGTAGCGTGC...............	23	1	20	0.05	1	1	0	0	0	0	0	0
......GACCTATCGCAGGGCGTC...............................................................................................................	18	0	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................CCTAGTGGCGTAAGTAGCGT.................	20	0	20	0.05	1	0	0	0	1	0	0	0
...GGCGACCTATCGCAGGGCGTCCT.............................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0	0
................................................................................................GGCCTAGTGGCGTAAGTAGTG..................	21	1	20	0.05	1	1	0	0	0	0	0	0
GTAGGCGACCTATCGCAGGGCG.................................................................................................................	22	0	20	0.05	1	1	0	0	0	0	0	0
..TGGCGAGCTATCGCAGGGCGTCCTT............................................................................................................	25	2	20	0.05	1	1	0	0	0	0	0	0
...GGCGACCTATCGCAGGGCGT................................................................................................................	20	0	20	0.05	1	1	0	0	0	0	0	0
................................................................................................GGCCTAGGGGCGTAAGTAGCGT.................	22	1	20	0.05	1	1	0	0	0	0	0	0
.....CGAGCTATCGCAGGGCGTCCTT............................................................................................................	22	1	20	0.05	1	1	0	0	0	0	0	0
......................................................................................................GTGGCGTAAGTAGCGT.................	16	0	20	0.05	1	0	1	0	0	0	0	0
....................................................................................................TAGTGGCGTAAGTAGCGT.................	18	0	20	0.05	1	0	0	0	0	1	0	0
..................................................................................................AATAGTGGCGTAAGTAGCGT.................	20	2	20	0.05	1	1	0	0	0	0	0	0
................................................................................................TGCCTAGTGGCGTAAGTAGCGT.................	22	1	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................AGGCCTAGTGGCGTAAGTAGCGT.................	23	1	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................CCTAGTGGCGTAAGTAGCGTGC...............	22	0	20	0.05	1	0	0	0	1	0	0	0
...................................................................................................TTAGTGGCGTAAGTAGCGT.................	19	1	20	0.05	1	1	0	0	0	0	0	0
......GACTTATCGCAGGGCGTCCT.............................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0	0
......GACCTATCGCAGGGCGTCCTTC...........................................................................................................	22	0	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................CTAGTGGCGTAAGTAGCGTGCG..............	22	0	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................AAGTGGCGTAAGTAGCGT.................	18	1	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................CTAGTGGCGAATGCAGCG..................	18	3	20	0.05	1	0	0	0	0	1	0	0
.................................................................................................GCTTAGTGGCGTAAGTAGCGTG................	22	1	20	0.05	1	0	0	1	0	0	0	0
........................................................................................................GGCGTAAGTAGCGTGCGG.............	18	0	20	0.05	1	1	0	0	0	0	0	0
..AGGCGACCTATCGCAGGGCGTCCT.............................................................................................................	24	0	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................CCTAGTGGCGTAAGTAGCG..................	19	0	20	0.05	1	1	0	0	0	0	0	0
................................................................................................GGCTTAGTGGCGTAAGTAGCGT.................	22	1	20	0.05	1	1	0	0	0	0	0	0
................................................................................................TGCCTAGTGGCGTAAGTAGCG..................	21	1	20	0.05	1	1	0	0	0	0	0	0
......GAGCTATCGCAGGGCGTCCTT............................................................................................................	21	1	20	0.05	1	1	0	0	0	0	0	0
..AGGCGACCTATCGCAGGGCG.................................................................................................................	20	0	20	0.05	1	1	0	0	0	0	0	0

GTAGGCGACCTATCGCAGGGCGTCCTTCGTGCTCGACGTCTCGGACCGATCACTCGAACCTGATCCTCTTTGACCCTGACATCTCCTAGATGCCTCGGCCTAGTGGCGTAAGTAGCGTGCGGCTTCGGCACGTCC
**************************************************.....(((((.((((......))))..))).))..**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M040
female body

SRR902010
ovaries

V112
male body

M059
embryo

GSM343916
embryo

M062
head

SRR902011
testis

...............................................................................................CGGCCTAGTGGCGTAAGTAGCGT.................

13.63

218

195

..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGT.................

8.40

126

112

.........................................CGGACCGATCACTCGAACCTGATCCT....................................................................

8.00

................................................................................................GGCCTAGTGGCGTAAGTAGCGT.................

7.70

154

147

.............................................................................................CTCGGCCTAGTGGCGTAAGTAGCGT.................

5.64

.......................................CTCGGACCGATCACTCGAACCTGAT.......................................................................

4.00

...............................................................................................CGGCCTAGTGGCGTAAGTAGCGTG................

2.06

.................................................................................................GCCTAGTGGCGTAAGTAGCGT.................

2.05

......................................TCTCGGACCGATCACTCGAACCTGAT.......................................................................

2.00

..........................................GGACCGATCACTCGAACCTGATCCT....................................................................

2.00

.........................................CGGACCGATCACTCGAACCTGAT.......................................................................

2.00

............................................................................................CCTCGGCCTAGTGGCGTAAGTAGCGT.................

1.86

..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGTG................

1.40

................................................................................................GGCCTAGTGGCGTAAGTAGCGTG................

1.10

...............................................................................................CGGCCTAGTGGCGTAAGTAGCGTGCGGCT...........

1.00

............................................ACCGATCACTCGAACCTGATCCT....................................................................

1.00

.............CGCAGGGCGTCCTTCGTGCTCGACGT................................................................................................

1.00

..............................GCTCGACGTCTCGGACCGATCACTCG...............................................................................

1.00

..........................................................................CCTGACATCTCCTAGATGCCTCGGC....................................

1.00

........................................TCGGACCGATCACTCGAACCTGAT.......................................................................

1.00

.............CGCAGGGCGTCCTTCGTGCTCGAC..................................................................................................

1.00

.........................................CGGACCGATCACTCGAACCTGATCC.....................................................................

1.00

...............................................................................................CGGCCTAGTGGCGTAAGTAGCG..................

0.94

..............................................................................................TCGGCCTAGTGGCGTAAGTAGCG..................

0.93

.....CGACCTATCGCAGGGCGTCCTT............................................................................................................

0.85

...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAGCGT.................

0.69

................................................................................................GGCCTAGTGGCGTAAGTAGCG..................

0.65

...GGCGACCTATCGCAGGGCGTCCTT............................................................................................................

0.55

....................................................................................CCTAGATGCCTCGGCCTAGTGGCGT..........................

0.50

GTAGGCGACCTATCGCAGGGCGTCCTT............................................................................................................

0.47

...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAG....................

0.46

GTAGGCGACCTATCGCAGGGCGT................................................................................................................

0.45

.............................................................................................CTCGGCCTAGTGGCGTAAGTAGCG..................

0.43

GTAGGCGACCTATCGCAGGGCGTCCT.............................................................................................................

0.42

..AGGCGACCTATCGCAGGGCGTCCTT............................................................................................................

0.40

.................................................................................................GCCTAGTGGCGTAAGTAGCGTG................

0.40

...................................................................................................CTAGTGGCGTAAGTAGCGT.................

0.40

.............................................................................................TTCGGCCTAGTGGCGTAAGTAGCGT.................

0.38

.....................................................................................CTAGATGCCTCGGCCTAGTGGCGT..........................

0.33

................................................................CCTCTTTGACCCTGACATCTCCT................................................

0.33

......GACCTATCGCAGGGCGTCCTT............................................................................................................

0.30

.................................................................CTCTTTGACCCTGACATCTCCT................................................

0.22

.................................................................................................GCCTAGTGGCGTAAGTAGCG..................

0.20

.............................................................................................ATCGGCCTAGTGGCGTAAGTAGCGT.................

0.20

...........................................................CTGATCCTCTTTGACCCTGACA......................................................

0.20

...............................................................................................CGGCTTAGTGGCGTAAGTAGCGT.................

0.19

..................................................................................CTCCTAGATGCCTCGGCCTAGTGGCGT..........................

0.17

................................................................................................GGCCTAGTGGCGTAAGTAG....................

0.15

..................................................................................................CCTAGTGGCGTAAGTAGCGTG................

0.15

.....CGACCTATCGCAGGGCGTCCT.............................................................................................................

0.15

.............................................................................................CTCGGCCTAGTGGCGTAAGTAGCGTG................

0.14

............................................................................................CCTCGGCCTAGTGGCGTAAGTAGCG..................

0.14

...........................................................................................GCCTCGGCCTAGTGGCGTAAGT......................

0.14

..............................................................................................TCGGCCTAGTGGCGTAAGTAG....................

0.13

...............................................................................................CGGCCTAGTGGCGTAAGTAGATT.................

0.13

...............................................................................................CGGCCTAGTGGCGTAAGTAGCGTGC...............

0.13

............................................................TGATCCTCTTTGACCCTGACATCTCC.................................................

0.11

...............................................................TCCTCTTTGGCCCTGACATCTCCT................................................

0.11

................................................................CCTCTTTGACCCTGACATCTCC.................................................

0.11

.......................................................................CAGCCTGACATCTTCTAG..............................................

0.10

...................................................................................................CTAGTGGCGTAAGTAGCGTG................

0.10

...................................................................................AACTAGATGCCTCGGCCT..................................

0.10

...................................................................................................ATAGTGGCGTAAGTAGCGT.................

0.10

............................................................TGATCCTCTTTGACCTTGACATCTCCT................................................

0.10

................................................................................................GGCCTAGTGGCGTAAGTAGCGTGC...............

0.10

..........................................................................................TGCCTCGGCCTAGTGGCGTAAGTAG....................

0.08

..........................................................................................TGCCTCGGCCTAGTGGCGTAAGTAGCGT.................

0.08

...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAGC...................

0.08

...........................................................................................GCCTCGGCCTAGTGGCGTAAGTAGCG..................

0.08

...........................................................................................GCCTCGGCCTAGTGGCGTAAGTA.....................

0.07

............................................................................................CCTCGGCCTAGTAGCGTAAGTAGCGT.................

0.07

.............................................................................................CTCGGCCTAGTGGCGTAAGTAG....................

0.07

............................................................................................CCTCGGCCTAGTGGCGTAAGTAGCGTGC...............

0.07

.............................................................................................CTCGGCCTAGTGGCGTAAGTAGC...................

0.07

..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGCGC...............

0.07

..............................................................................................TCGGCCTAGTGGCGTAAGTAGC...................

0.07

.............................................................................................ATCGGCCTAGTGGCGTAAGTAGCG..................

0.07

..............................................................................................TCGACCTAGTGGCGTAAGTAGCGT.................

0.07

..............................................................................................TCGGCCTAGTGGCGTAAGTAGCGTGC...............

0.07

.............................................................................................CTCGGCCTAGTGGCGTAAGTA.....................

0.07

..............................................................................................TCGGCTTAGTGGCGTAAGTAGCGT.................

0.07

..............................................................................................TCGGCCTAGTGGCGTAAATAGCG..................

0.06

..............................................................................................ACGGCCTAGTGGCGTAAGTAGCGT.................

0.06

..............................................................................................CCGGCCTAGTGGCGTAAGTAGCGTG................

0.06

...............................................................................................CGGCCTAGTGGCGTAAGTAGC...................

0.06

...............................................................................................CGGCCTATTGGCGTAAGTAGCGT.................

0.06

...............................................................................................CGGCCCAGTGGCGTAAGTAGCGT.................

0.06

...............................................................................................CGGCCTAGCGGCGTAAGTAGCGT.................

0.06

...............................................................................................CGGCCTAGTGGCGTAAGTAGCTT.................

0.06

...............................................................................................CGGCCTAGTGGCGTAAGTATCG..................

0.06

..............................................................................................ACGGCCTAGTGGCGTAAGTAGCGTG................

0.06

...............................................................................................CGGCCTAGTGGTGTAAGTAGCGT.................

0.06

................................................................................................GGCCTAGTGGCGTAAGTAGTCTG................

0.05

..AGGCGACCTATCGCAGGGCGTCCTTC...........................................................................................................

0.05

.................................................................................................CCCTAGTGGCGTAAGTAGCGTGC...............

0.05

......GACCTATCGCAGGGCGTC...............................................................................................................

0.05

..................................................................................................CCTAGTGGCGTAAGTAGCGT.................

0.05

...GGCGACCTATCGCAGGGCGTCCT.............................................................................................................

0.05

................................................................................................GGCCTAGTGGCGTAAGTAGTG..................

0.05

GTAGGCGACCTATCGCAGGGCG.................................................................................................................

0.05

..TGGCGAGCTATCGCAGGGCGTCCTT............................................................................................................

0.05

...GGCGACCTATCGCAGGGCGT................................................................................................................

0.05

................................................................................................GGCCTAGGGGCGTAAGTAGCGT.................

0.05

.....CGAGCTATCGCAGGGCGTCCTT............................................................................................................

0.05

......................................................................................................GTGGCGTAAGTAGCGT.................

0.05

....................................................................................................TAGTGGCGTAAGTAGCGT.................

0.05

..................................................................................................AATAGTGGCGTAAGTAGCGT.................

0.05

................................................................................................TGCCTAGTGGCGTAAGTAGCGT.................

0.05

...............................................................................................AGGCCTAGTGGCGTAAGTAGCGT.................

0.05

..................................................................................................CCTAGTGGCGTAAGTAGCGTGC...............

0.05

...................................................................................................TTAGTGGCGTAAGTAGCGT.................

0.05

......GACTTATCGCAGGGCGTCCT.............................................................................................................

0.05

......GACCTATCGCAGGGCGTCCTTC...........................................................................................................

0.05

...................................................................................................CTAGTGGCGTAAGTAGCGTGCG..............

0.05

....................................................................................................AAGTGGCGTAAGTAGCGT.................

0.05

...................................................................................................CTAGTGGCGAATGCAGCG..................

0.05

.................................................................................................GCTTAGTGGCGTAAGTAGCGTG................

0.05

........................................................................................................GGCGTAAGTAGCGTGCGG.............

0.05

..AGGCGACCTATCGCAGGGCGTCCT.............................................................................................................

0.05

..................................................................................................CCTAGTGGCGTAAGTAGCG..................

0.05

................................................................................................GGCTTAGTGGCGTAAGTAGCGT.................

0.05

................................................................................................TGCCTAGTGGCGTAAGTAGCG..................

0.05

......GAGCTATCGCAGGGCGTCCTT............................................................................................................

0.05

..AGGCGACCTATCGCAGGGCG.................................................................................................................

0.05

Species	Coordinate	ID	Alignment
dp5	Unknown_group_27:23361-23495 -	dps_1931	CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACG-----------CCGAAGCCGTGCAGG
droPer2	scaffold_54:500800-500945 +		CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACGCCCTGGGCACCCCGAAGCCGTGCAGG
droWil2	scf2_1100000004947:1206715-1206832 -		CGTTCATTGGATAAATCATCGTCGCAAAGCCGAGATGGAAGTCCTTTGTGACGAATTCGGACTAGACACCGGTGGAATAGTGGAAGACCTAAGAAATCGGTTCCGTGAGTTCGCCTCA----------------------------
droVir3	scaffold_13324:817171-817284 +		CGTCCGCTGGATTCACCAGCGACGCAAAGAAGAGTTAGTGGCGATCGCCCAGGAGCTTGGGCTGGAAGAGGAGGGGCGCGTGGAGGAGCTACGTAAGCGGCTGTCCACCTACGT--------------------------------
droMoj3	scaffold_6381:36225-36349 -		G---------------------CGAAAGGCAGAGCTGGAGGCCATTCTCATCGAACTGGGACTGGAACCACATGGTCTCGTGGACGAGCTGCGGCGGCGACTAACCGCATATATCAATAGGGAAGATCTCAGCGAGGAGGTGCAAC
droAna3	scaffold_12928:491424-491560 +		ACT-CGTTGCATAAGTTACCGCCGCAAGAATAAACTCCAAGGCCTCCTCAAATAATTCGGACTGGATACCATTGCACCGGTCGAGGAACAACGCTCACGCCTAACCACATTCATAGGAGGAAACACCCA--------CGGTCCGGC
droKik1	scf7180000301829:11518-11654 +		CGCACGCTGGATCGCGTATCTGCGGAAGCGGGAATTGGAGGCGATTTTGAAGGAGTTTTCCTTGGAAGCAACCGGAACCGTGGAGGAAATGCGGAGCCGGCTGGCTGCCTTCAACAATCAAGATGATCA---------CGTGCTGG
droFic1	scf7180000452789:7964-8099 -		AGTCTCCTGGATCTCATACAGAAAGAAGCACGAGCTCGAGGTTATCCTTCTCGATCTCGGCCTGGAGCAGAACGGTACGGTCGAGGAACAGCGAGCCCGACTGTACGCGTTCGCCAGGCAACCGGAGCA----------CTCCAAG
droEle1	scf7180000490501:13251-13311 -		--TCAGGTGGATCTCCTACCGCCGGAAAGACGAACTGCAGGCTCTATTAAAAGAGTTTGGACT-----------------------------------------------------------------------------------
droRho1	scf7180000778114:9177-9303 -		-------TGGATCTCGTACCGAAGGAAGCATGAGCTCGAAGACATTTTTCTGGAGCTAGGACTGGAACACAGCGGTACAGTCGAGGAGCAACGAG------------CATTCGCACGACAGCCAGAGCACACTGACGCAGTACTAG
droBia1	scf7180000300133:1879-2015 +		CGTAAGATGAGTAACGGATCGCCCCAACAACGAGCTGCAAGCCCTCGCGGCGGAGTTTGGGTTGCAACCAACGGGAACGGTTGAGGAACTGCGCACCCGGCTTATAGCGTTCTTCACCCGAGGTAACCA---------CGAGCAAA
droTak1	scf7180000415652:3051-3187 +		CGTAAGATGGGTAACGTATCGTCGCAAGGACGAGCTACAAGCCCTTGCTGTGGAGTTTGGGTTGCAATCAACGGGAACGGTTGAGGAACTGCGCAGTCGACTTATAGCGTTCTTCACCCGAGATGACCA---------CGAGCAAA
droEug1	scf7180000409440:56869-57012 -		TCT--CCTGGATATCCTACAGGAAGAAGCACGAGCTCGAGGCTATTCTTCTCGAGCTCGGCCTCGAACAAAACGGTACGGTCGACGAGCAGCGGGCCGGACTGTACGCATTCGCCAGGCAAACAGAACACTCCGAAGATACCCTGA

Species

Coordinate

Alignment

dp5

Unknown_group_27:23361-23495 -

dps_1931

CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACG-----------CCGAAGCCGTGCAGG

droPer2

scaffold_54:500800-500945 +

CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACGCCCTGGGCACCCCGAAGCCGTGCAGG

droWil2

scf2_1100000004947:1206715-1206832 -

CGTTCATTGGATAAATCATCGTCGCAAAGCCGAGATGGAAGTCCTTTGTGACGAATTCGGACTAGACACCGGTGGAATAGTGGAAGACCTAAGAAATCGGTTCCGTGAGTTCGCCTCA----------------------------

droVir3

scaffold_13324:817171-817284 +

CGTCCGCTGGATTCACCAGCGACGCAAAGAAGAGTTAGTGGCGATCGCCCAGGAGCTTGGGCTGGAAGAGGAGGGGCGCGTGGAGGAGCTACGTAAGCGGCTGTCCACCTACGT--------------------------------

droMoj3

scaffold_6381:36225-36349 -

G---------------------CGAAAGGCAGAGCTGGAGGCCATTCTCATCGAACTGGGACTGGAACCACATGGTCTCGTGGACGAGCTGCGGCGGCGACTAACCGCATATATCAATAGGGAAGATCTCAGCGAGGAGGTGCAAC

droAna3

scaffold_12928:491424-491560 +

ACT-CGTTGCATAAGTTACCGCCGCAAGAATAAACTCCAAGGCCTCCTCAAATAATTCGGACTGGATACCATTGCACCGGTCGAGGAACAACGCTCACGCCTAACCACATTCATAGGAGGAAACACCCA--------CGGTCCGGC

droKik1

scf7180000301829:11518-11654 +

CGCACGCTGGATCGCGTATCTGCGGAAGCGGGAATTGGAGGCGATTTTGAAGGAGTTTTCCTTGGAAGCAACCGGAACCGTGGAGGAAATGCGGAGCCGGCTGGCTGCCTTCAACAATCAAGATGATCA---------CGTGCTGG

droFic1

scf7180000452789:7964-8099 -

AGTCTCCTGGATCTCATACAGAAAGAAGCACGAGCTCGAGGTTATCCTTCTCGATCTCGGCCTGGAGCAGAACGGTACGGTCGAGGAACAGCGAGCCCGACTGTACGCGTTCGCCAGGCAACCGGAGCA----------CTCCAAG

droEle1

scf7180000490501:13251-13311 -

--TCAGGTGGATCTCCTACCGCCGGAAAGACGAACTGCAGGCTCTATTAAAAGAGTTTGGACT-----------------------------------------------------------------------------------

droRho1

scf7180000778114:9177-9303 -

-------TGGATCTCGTACCGAAGGAAGCATGAGCTCGAAGACATTTTTCTGGAGCTAGGACTGGAACACAGCGGTACAGTCGAGGAGCAACGAG------------CATTCGCACGACAGCCAGAGCACACTGACGCAGTACTAG

droBia1

scf7180000300133:1879-2015 +

CGTAAGATGAGTAACGGATCGCCCCAACAACGAGCTGCAAGCCCTCGCGGCGGAGTTTGGGTTGCAACCAACGGGAACGGTTGAGGAACTGCGCACCCGGCTTATAGCGTTCTTCACCCGAGGTAACCA---------CGAGCAAA

droTak1

scf7180000415652:3051-3187 +

CGTAAGATGGGTAACGTATCGTCGCAAGGACGAGCTACAAGCCCTTGCTGTGGAGTTTGGGTTGCAATCAACGGGAACGGTTGAGGAACTGCGCAGTCGACTTATAGCGTTCTTCACCCGAGATGACCA---------CGAGCAAA

droEug1

scf7180000409440:56869-57012 -

TCT--CCTGGATATCCTACAGGAAGAAGCACGAGCTCGAGGCTATTCTTCTCGAGCTCGGCCTCGAACAAAACGGTACGGTCGACGAGCAGCGGGCCGGACTGTACGCATTCGCCAGGCAAACAGAACACTCCGAAGATACCCTGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACG-----------CCGAAGCCGTGCAGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................TAGGAGAAACTGGGACTGTAGAGG............................................................	24	9	4.33	39	0	1	0	0	0	0	0	15	23	0
......................................................GCTTGGACTAGGAGAAACTGGGAA....................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTG..................................................................	23	11	3.00	33	0	23	0	0	0	0	0	10	0	0
............................................................................................................ATTCATCGCACG-----------CCGAAGCCG......	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGT.................................................................	24	10	1.80	18	0	7	0	0	0	0	0	11	0	0
..............................................................TAGGAGAAACTGGGACTGTAGAG.............................................................	23	10	1.30	13	0	0	0	0	0	0	0	1	12	0
.................CCCGCAGGAAGCACGAGCTGCAGA.........................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................GCTTGGACTAGGAGAAACTGGG......................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........................................................TGGACTAGGAGAAACTGGGACT...................................................................	22	11	1.00	11	0	5	0	0	0	0	0	3	3	0
......................................................GCTTGGACTAGGAGAAACTGGGAC....................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................CTGGGACTGTAGAGGATCTACGGA...................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...........TAGCGTCCCGCAGGAAGCACGAGC...............................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CCGCAGGAAGCACGAGCTGCAGA.........................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGTAG...............................................................	26	10	0.90	9	0	2	0	0	0	0	0	7	0	0
.........................................................TGGACTAGGAGAAACTGGGAC....................................................................	21	12	0.83	10	0	4	0	0	0	0	0	6	0	0
.........................................................TGGACTAGGAGAAACTGGGA.....................................................................	20	12	0.67	8	0	1	0	0	0	0	1	5	1	0
..................................................................AGAAACTGGGACTGTAGAGG............................................................	20	9	0.56	5	0	0	0	0	0	0	0	0	5	0
.........................................................TGGACTAGGAGAAACTGG.......................................................................	18	12	0.50	6	0	2	0	0	0	0	0	4	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGTAGT..............................................................	27	9	0.44	4	0	0	0	0	0	0	0	4	0	0
..............................................................TAGGAGAAACTGGGACTGTAGAGGA...........................................................	25	9	0.33	3	0	0	0	0	0	0	0	3	0	0
.........................................................TGGACTAGGAGAAACTGGGACTGTA................................................................	25	10	0.30	3	0	0	0	0	0	0	0	3	0	0
.........................................................TGGACTAGGAGAAACTGGGACTC..................................................................	23	11	0.27	3	0	0	0	0	0	0	0	0	3	0
.........................................................TGGACTAGGAGAAACTGGGACTGTAGA..............................................................	27	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...................................................................GAAACTGGGACTGTAGAGG............................................................	19	14	0.21	3	0	0	0	0	0	0	0	0	3	0
................................................................GGAGAAACTGGGACTGTAGAG.............................................................	21	10	0.20	2	0	0	0	0	0	0	0	0	2	0
........................................................TTGGACTAGGAGAAACTGGGAC....................................................................	22	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGG.....................................................................	20	12	0.17	2	0	0	0	0	0	0	0	0	2	0
.........................................................TGGACTAGGAGAAACTGGG......................................................................	19	12	0.17	2	0	1	0	0	0	0	0	1	0	0
..................................................................AGAAACTGGGACTGTAGAGGA...........................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.............................................................CTAGGAGAAACTGGGACTGTAGAGG............................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.................................................................GAGAAACTGGGACTGTAGAGG............................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	1	0
..................................................................AGAAACTGGGACTGTAGAG.............................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	1	0
..........................................................GGACTAGGAGAAACTGGGACTGTA................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................GATCACCGCATTCATCGCACG-----------...............	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................GACTAGGAGAAACTGGGACTGTAG...............................................................	24	10	0.10	1	0	0	0	0	0	0	0	1	0	0
...............................................................AGGAGAAACTGGGACTGTA................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	1	0
..........................................................GGACTAGGAGAAACTGGGACT...................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGACTG..................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................................................GGACTAGGAGAAACTGGGACTG..................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................TTGGACTAGGAGAAACTGG.......................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGA.....................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................GGACTAGGAGAAACTGGGA.....................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................TACGGAGCCGGATCACCGCATTCATCGC.............................	28	12	0.08	1	0	0	0	0	0	0	0	0	1	0
........................................................TTGGACTAGGAGAAACTGGG......................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................................................CTACGGAGCCGGATCACCG.......................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................TACGGAGCCGGATCACCGCA.....................................	20	13	0.08	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................AGCCGGATCACCGCATTCATCGCAC...........................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.ATCCGCTGGATAGCGTCCCGCAGG.........................................................................................................................	24	19	0.05	1	0	1	0	0	0	0	0	0	0	0
CATCCGCTGGATAGCGTCCCGCAGG.........................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................TCACCGCATTCATCGCACG-----------CC.............	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......CTGGATAGCGTCCCGCAGGA........................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................CGGATCACCGCATTCATCGCAC...........................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..TCCGCTGGATAGCGTCCCGCAGG.........................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CATCCGCTGGATAGCGTCCCGCAGGAAGCACGAGCTGCAGAGCCTGGCTAGTGAGCTTGGACTAGGAGAAACTGGGACTGTAGAGGATCTACGGAGCCGGATCACCGCATTCATCGCACGCCCTGGGCACCCCGAAGCCGTGCAGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................TTGGACTAGGAGAAACTGGGA.....................................................................	21	20	0.25	5	5	0	0	0	0	0
...........................................................................................................CATTCATCGCACGCCCTGC....................	19	20	0.20	4	4	0	0	0	0	0
....................................................................AAACTGGGACTGTAGAGGA...........................................................	19	20	0.15	3	3	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACTG..................................................................	23	20	0.15	3	0	3	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGAC....................................................................	22	20	0.15	3	1	2	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGG......................................................................	20	20	0.10	2	0	2	0	0	0	0
..............................................................TAGGAGAAACTGGGACTGTAGAGGA...........................................................	25	20	0.10	2	2	0	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGACT...................................................................	22	20	0.10	2	0	2	0	0	0	0
.......................................................................................TCTACGGAGCCGGATCACCGCATTCA.................................	26	13	0.08	1	0	1	0	0	0	0
............................................................................................................ATTCATCGCACGCCCTGGGCAC................	22	18	0.06	1	0	1	0	0	0	0
............................................................................................................ATTCATCGCACGCCCTGGGCACC...............	23	18	0.06	1	0	1	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGACTG..................................................................	24	20	0.05	1	0	1	0	0	0	0
........................................................TTGGACTAGGAGAAACTGGGACA...................................................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................CCGCATTCATCGCACGCCCTG.....................	21	20	0.05	1	0	1	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGAC....................................................................	21	20	0.05	1	0	1	0	0	0	0
..............................................................TAGGAGAAACTGGGACTGTAGAGG............................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................TGGACTAGGAGAAACTGGGAAA...................................................................	22	20	0.05	1	0	1	0	0	0	0

droWil2

CGTTCATTGGATAAATCATCGTCGCAAAGCCGAGATGGAAGTCCTTTGTGACGAATTCGGACTAGACACCGGTGGAATAGTGGAAGACCTAAGAAATCGGTTCCGTGAGTTCGCCTCA----------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................ACTAGACACCGGTGGAATAGTGG...............................................................	23	1	1.00	1	0	1	0	0	0

droVir3

CGTCCGCTGGATTCACCAGCGACGCAAAGAAGAGTTAGTGGCGATCGCCCAGGAGCTTGGGCTGGAAGAGGAGGGGCGCGTGGAGGAGCTACGTAAGCGGCTGTCCACCTACGT--------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................AGAAGAGTTAGTGGCGATCGC..................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGAAGAGTTAGTGGCGATCGCCC................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACGCAAAGAAGAGTTAGTGGC........................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TTGGGCTGGAAGAGGAGGG.......................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACGCAAAGAAGAGTTAGTGGCGATC....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................GCTACGTAAGCGGCTGTCCACC.....................................	22	20	0.90	18	0	0	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTCCACCT....................................	23	20	0.55	11	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTCCAC......................................	21	20	0.45	9	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................TGGCGATCGCCCAGGAGCT.........................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................AGCTACGTAAGCGGCTGTCCACCTAC..................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
.......................................................................................GCTACGTAAGCGGCTGTCCACCTA...................................	24	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTCC........................................	19	20	0.20	4	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................GCTACGTAAGCGGCTGTCCA.......................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CTACGTAAGCGGCTGTCCACCTACG.................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TACGTAAGCGGCTGTCCACCTA...................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTCCACCTT...................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTTA........................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CTACGTAAGCGGCTGTCCACCTAC..................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTCCACTA....................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGCGTGGAGGAGCTACGTAAG.................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTCCACCA....................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTGGAGGAGCTACGTAAGCGGCT............................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GGAGGAGCTACGTAAGCGGCTT...........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GCGTGGAGGAGCTACGTAAGCGGC.............................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CGTGGAGGAGCTACGTAAGCGGCT............................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AGCTACGTAAGCGGCTGTCCAC......................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTC.........................................	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGCGTGGAGGAGCTACGTAAGCGGCTT...........................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTACGTAAGCGGCTGTCCACT.....................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G---------------------CGAAAGGCAGAGCTGGAGGCCATTCTCATCGAACTGGGACTGGAACCACATGGTCTCGTGGACGAGCTGCGGCGGCGACTAACCGCATATATCAATAGGGAAGATCTCAGCGAGGAGGTGCAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................TTCTCATCGAACTGGGACTGGAACCACA..........................................................................	28	10	2.10	21	21	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTGGAACC.............................................................................	25	13	1.92	25	12	0	0	0	13	0
............................................TTCTCATCGAACTGGGACTGG.................................................................................	21	13	1.23	16	16	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTGGAAC..............................................................................	24	13	1.08	14	9	0	0	0	5	0
............................................TTCTCATCGAACTGGGACTGGA................................................................................	22	13	0.69	9	6	0	0	0	3	0
.............................................TCTCATCGAACTGGGACTGGAACCACA..........................................................................	27	10	0.40	4	4	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTGGAACCA............................................................................	26	11	0.36	4	4	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTGGAA...............................................................................	23	13	0.31	4	4	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTGGAACCAC...........................................................................	27	10	0.30	3	3	0	0	0	0	0
.............................................TCTCATCGAACTGGGACTGGAACC.............................................................................	24	13	0.23	3	3	0	0	0	0	0
.............................................TCTCATCGAACTGGGACTGG.................................................................................	20	13	0.23	3	3	0	0	0	0	0
........................................................................TGGTCTCGTGGACGAGCTGCGG....................................................	22	12	0.17	2	1	1	0	0	0	0
.............................................................................TCGTGGACGAGCTGCGGCGGCGAC.............................................	24	7	0.14	1	0	0	0	0	1	0
.....................................................................................GAGCTGCGGCGGCGACTAACCGCATA...................................	26	8	0.13	1	1	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTGGAACCATG..........................................................................	28	10	0.10	1	1	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTGGAACCACAA.........................................................................	29	10	0.10	1	1	0	0	0	0	0
.............................................TCTCATCGAACTGGGACTGGAACCAC...........................................................................	26	10	0.10	1	1	0	0	0	0	0
...............................................TCATCGAACTGGGACTGGAACCA............................................................................	23	11	0.09	1	1	0	0	0	0	0
........................................................................TGGTCTCGTGGACGAGCTGCGGCGT.................................................	25	12	0.08	1	1	0	0	0	0	0
..............................................................................CGTGGACGAGCTGCGGCGG.................................................	19	12	0.08	1	1	0	0	0	0	0
........................................................................TGGTCTCGTGGACGAGCTGCGGCGGCA...............................................	27	12	0.08	1	1	0	0	0	0	0
.............................................................................TCGTGGACGAGCTGCGGCGG.................................................	20	12	0.08	1	1	0	0	0	0	0
........................................................................TGGTCTCGTGGACGAGCTGCGGT...................................................	23	12	0.08	1	1	0	0	0	0	0
.......................................................................ATGGTCTCGTGGACGAGCTGCGG....................................................	23	12	0.08	1	1	0	0	0	0	0
........................................................................TGGTCTCGTGGACGAGCTGCGGCGG.................................................	25	12	0.08	1	1	0	0	0	0	0
........................................................................TGGTCTCGTGGACGAGCTGCGGCG..................................................	24	12	0.08	1	1	0	0	0	0	0
........................................................................TGGTCTCGTGGACGAGCTGCGGCGC.................................................	25	12	0.08	1	0	1	0	0	0	0
..............................................CTCATCGAACTGGGACTGGAACC.............................................................................	23	13	0.08	1	1	0	0	0	0	0
............................................TTCTCATCGAACTGGGACTG..................................................................................	20	13	0.08	1	1	0	0	0	0	0
..............................................CTCATCGAACTGGGACTGG.................................................................................	19	13	0.08	1	1	0	0	0	0	0
............................................TTCTCATCGAACTGGGAC....................................................................................	18	13	0.08	1	1	0	0	0	0	0
.............................................TCTCATCGAACTGGGACTGGA................................................................................	21	13	0.08	1	1	0	0	0	0	0
.............................................TCTCATCGAACTGGGACTGGAAC..............................................................................	23	13	0.08	1	0	0	0	0	1	0

droAna3

ACT-CGTTGCATAAGTTACCGCCGCAAGAATAAACTCCAAGGCCTCCTCAAATAATTCGGACTGGATACCATTGCACCGGTCGAGGAACAACGCTCACGCCTAACCACATTCATAGGAGGAAACACCCA--------CGGTCCGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droKik1

CGCACGCTGGATCGCGTATCTGCGGAAGCGGGAATTGGAGGCGATTTTGAAGGAGTTTTCCTTGGAAGCAACCGGAACCGTGGAGGAAATGCGGAGCCGGCTGGCTGCCTTCAACAATCAAGATGATCA---------CGTGCTGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTCTCCTGGATCTCATACAGAAAGAAGCACGAGCTCGAGGTTATCCTTCTCGATCTCGGCCTGGAGCAGAACGGTACGGTCGAGGAACAGCGAGCCCGACTGTACGCGTTCGCCAGGCAACCGGAGCA----------CTCCAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--TCAGGTGGATCTCCTACCGCCGGAAAGACGAACTGCAGGCTCTATTAAAAGAGTTTGGACT-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-------TGGATCTCGTACCGAAGGAAGCATGAGCTCGAAGACATTTTTCTGGAGCTAGGACTGGAACACAGCGGTACAGTCGAGGAGCAACGAG------------CATTCGCACGACAGCCAGAGCACACTGACGCAGTACTAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGTAAGATGAGTAACGGATCGCCCCAACAACGAGCTGCAAGCCCTCGCGGCGGAGTTTGGGTTGCAACCAACGGGAACGGTTGAGGAACTGCGCACCCGGCTTATAGCGTTCTTCACCCGAGGTAACCA---------CGAGCAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGTAAGATGGGTAACGTATCGTCGCAAGGACGAGCTACAAGCCCTTGCTGTGGAGTTTGGGTTGCAATCAACGGGAACGGTTGAGGAACTGCGCAGTCGACTTATAGCGTTCTTCACCCGAGATGACCA---------CGAGCAAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCT--CCTGGATATCCTACAGGAAGAAGCACGAGCTCGAGGCTATTCTTCTCGAGCTCGGCCTCGAACAAAACGGTACGGTCGACGAGCAGCGGGCCGGACTGTACGCATTCGCCAGGCAAACAGAACACTCCGAAGATACCCTGA	Size	Hit Count	Total Norm	Total
No Reads

dps_1931

Unknown_group_27:23411-23445 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.8	-3.7	-3.4