ID:

dps_1924

 Coordinate:

Unknown_group_263:8616-8766 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.3 -9.9 -9.8 -9.8

Flybase annnotation

exon [dpse_GLEANR_11665:6]; CDS [Dpse\GA23134-cds]; intron [Dpse\GA23134-in]

Repeatable elements

NameClassFamilyStrand
BEL1_I_Dpse-intLTRPao+
mature
  1. dps_1924  Unknown_group_263:8659-8679 +
  2. Unknown_group_263:12729-12749 +
  3. Unknown_singleton_3923:3764-3784 -
star
  1. Unknown_group_15:22540-22562 +
  2. Unknown_singleton_869:15870-15892 +
  3. Unknown_singleton_880:14726-14748 -
  4. Unknown_singleton_880:20351-20373 -
  5. Unknown_singleton_880:26511-26533 -
  6. Unknown_group_362:10829-10851 -
  7. Unknown_group_362:22474-22496 -
  8. Unknown_group_23:13827-13849 +
  9. 2:25199207-25199229 -
  10. Unknown_group_750:4307-4329 -
  11. dps_1924  Unknown_group_263:8715-8737 +
  12. Unknown_group_390:11253-11275 +
  13. Unknown_singleton_46:1248-1270 +
  14. Unknown_singleton_3923:3706-3728 -
  15. Unknown_singleton_3250:248-270 +
  16. Unknown_singleton_206:788-810 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGGACGGCGTTAATGGTCAGCAGCCGGAATCTGGCGGTGAGAACCCGTGTGGATTAGGAGAGATATATGAGCCGGAAAAGATGCCTGGTGCGAGTTCTGAGACTGAGGGAGACTGCAATGAAATTTATCGCGTTAGGGATACAAAAATATAGATGTGATCTCGGCGGCAACATCGGCCGCACCGAACGTGTCCACCACAGCCCCGACAAGTCATCAAGTACCTGAGCATACGAACCAAGGAGGAGGGGTG
*********************************************************************************************.((..................(((..(((.....((((((((.................)))))))).)))...)))))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 V112
male body		 M022
male body		 SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAGGGG.. 26 0 2 3.50 7 0 4 3 0 0 0
.............................................................................................................................................................................................................................CCTGAGCATACGAACCAAGGAGG....... 23 0 2 2.50 5 5 0 0 0 0 0
.............................................................................................................................................................................................................................CCTGAGCATACGAACCAAGGAG........ 22 0 2 1.50 3 1 0 0 2 0 0
...............................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAGGG... 25 0 2 1.00 2 0 0 2 0 0 0
...............................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAGG.... 24 0 2 1.00 2 0 2 0 0 0 0
.............................................................................................................................................................................................................................CCTGAGCATACGAACCAAGGAGGA...... 24 0 2 1.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAG..... 23 0 2 1.00 2 0 1 1 0 0 0
.............................................................................................AGTTCTGAGACTGAGGGAGAC......................................................................................................................................... 21 0 3 1.00 3 3 0 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGGCAAC............................................................................... 23 0 16 0.94 15 2 10 2 1 0 0
....................................................................................................................................................TATAGATGTGATCTCGGCGGCAAC............................................................................... 24 0 16 0.75 12 0 9 3 0 0 0
................................................................................................TCTGAGACTGAGGGAGACTGCAA.................................................................................................................................... 23 0 3 0.67 2 0 0 2 0 0 0
...........................................................................................CGAGTTCTGAGACTGAGGGAGACTCC...................................................................................................................................... 26 1 3 0.67 2 0 2 0 0 0 0
.....................................................................................................................................................................................................................................TACGAACCAAGGAGGAGGGGT. 21 0 2 0.50 1 0 0 1 0 0 0
...................................................................................................................................................................................................................................CATACGAACCAAGGAGGAGGGG.. 22 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................CTGAGCATACGAACCAAGGAGGA...... 23 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................ATACGAACCAAGGAGGAGGGG.. 21 0 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TGAGCATGCGAACCAAGGAGGAG..... 23 1 2 0.50 1 0 1 0 0 0 0
..................................GCGGTGAGAATCCGTATGGATTAA................................................................................................................................................................................................. 24 3 4 0.50 2 2 0 0 0 0 0
.....................................................................................................................................................................................................................................TACGAACCAAGGAGGAGGGG.. 20 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGG................................................................................... 19 0 20 0.45 9 8 1 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGGC.................................................................................. 20 0 20 0.40 8 0 7 1 0 0 0
..................................................TGGATTAGGAGAGATATATGAGCC................................................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0 0
................................................................................................TCTGAGACTGAGGGAGACTG....................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
......................................TGAGAACCCGTGTGGATTAGGAGAGA........................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
.........................................GAACCCGTGTGGATTAGGAGAG............................................................................................................................................................................................ 22 0 3 0.33 1 1 0 0 0 0 0
................GTCAGCAGCCGGAATCTGGCGG..................................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
...GACGGCGTTAATGGTCAGCAGCCG................................................................................................................................................................................................................................ 24 0 3 0.33 1 0 0 0 1 0 0
...........................................................................................CGAGTTCTGAGACTGAGGGAGA.......................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
.................................................................................................CTGAGACTGAGGGAGACTGCAAT................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
........................................AGAACCCGTGTGGATTAGGAGAGA........................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
...........................................................................................CGAGTTCTGAGACTGAGGGAGACT........................................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0
......................................................TTAGGAGAGATATATGAGCCGGA.............................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0
...........................................................................................CGAGTTCTGAGACTGAGGGAGACTGCA..................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
...........................................................................................CGAGTTCTGAGACTGAGGGAGACC........................................................................................................................................ 24 1 3 0.33 1 0 1 0 0 0 0
..............................................................................................GTTCTGAGACTGAGGGAGACT........................................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0
..................................................................................TGCCTGGTGCGAGTTCTGAGACTGAGG.............................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0 0
.........................................................GGAGAGATATATGAGCCGGAAAAGA......................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
..................................................................................TGCCTGGTGCGAGTTCTGAGAC................................................................................................................................................... 22 0 3 0.33 1 0 0 0 0 1 0
......................................TGAGAACCCGTGTGGATTAGGAG.............................................................................................................................................................................................. 23 0 3 0.33 1 0 1 0 0 0 0
....................................................GATTAGGAGAGATATATGAGCCGGA.............................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
.....................................................ATTAGGAGAGATATATGAGCCGG............................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
...........TAATGGTCAGCAGCCGGAATCTGGCGG..................................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
...........................................................................................CGAGTTCTGAGACTGAGGGAGAC......................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
............................................................................................GAGTTCTGAGACTGAGGGAGA.......................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGGCAA................................................................................ 22 0 20 0.30 6 1 2 3 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGGCAACA.............................................................................. 24 0 16 0.25 4 1 3 0 0 0 0
...................................................................................................................................................................................................................................CATACGAACCACGTTGGAGGG... 21 3 6 0.17 1 1 0 0 0 0 0
....................................................................................................................................................TATAGATGTGATCTCGGCGGCAA................................................................................ 23 0 20 0.15 3 0 1 2 0 0 0
....................................................................................................................................................TATAGATGTGATCTCGGCGGC.................................................................................. 21 0 20 0.15 3 0 3 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGGCA................................................................................. 21 0 20 0.15 3 0 3 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCG.................................................................................... 18 0 20 0.15 3 3 0 0 0 0 0
......................................................................................................................................................TAGATGTGATCTCGGCGGCAACA.............................................................................. 23 0 16 0.13 2 0 1 1 0 0 0
....................................................................................................................................................TATAGATGTGATCTCGGCGGCAACA.............................................................................. 25 0 16 0.13 2 0 1 1 0 0 0
................................TGGCGGTGAGCAGACGTGTG....................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0
....................................................................................................................................................TATAGATGTGATCTCGGCGG................................................................................... 20 0 20 0.10 2 2 0 0 0 0 0
...............................CTGGAGGACAGAACCCGTGT........................................................................................................................................................................................................ 20 3 11 0.09 1 1 0 0 0 0 0
....................................................................................................................................................TATAGTTGTGATCTCGGCGGCAACA.............................................................................. 25 1 16 0.06 1 0 0 1 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGGCCCC............................................................................... 23 2 16 0.06 1 0 1 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGGGAAC............................................................................... 23 1 16 0.06 1 0 1 0 0 0 0
......................................................................................................................................................TAGATGTGATCTCGGCGGCAAC............................................................................... 22 0 16 0.06 1 0 0 1 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCGAA.................................................................................. 20 2 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................GCTATAGATGTGATCTCGGCGG................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................ATAGATGTGATCTCGGCAT................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................TATAGATGTGATCTCGGCGGCA................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................TGCTATAGATGTGATCTCGGCG.................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................CGGCGGCAATATCGGCTACA..................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
......................................................................................................................................................TAGATGTGATCTCGGCGGCA................................................................................. 20 0 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TACCTGCCGCAATTACCAGTCGTCGGCCTTAGACCGCCACTCTTGGGCACACCTAATCCTCTCTATATACTCGGCCTTTTCTACGGACCACGCTCAAGACTCTGACTCCCTCTGACGTTACTTTAAATAGCGCAATCCCTATGTTTTTATATCTACACTAGAGCCGCCGTTGTAGCCGGCGTGGCTTGCACAGGTGGTGTCGGGGCTGTTCAGTAGTTCATGGACTCGTATGCTTGGTTCCTCCTCCCCAC
*******************************************************************************.((..................(((..(((.....((((((((.................)))))))).)))...)))))********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 SRR902010
ovaries
 M059
embryo
 GSM444067
head
...........................................................................................................................................................................GTAGCCGGCGTGGCTTGCACAGGT........................................................ 24 0 2 3.50 7 3 4 0 0 0 0
.............................................................................TTTCTACGGACCACGCTCAAGACT...................................................................................................................................................... 24 0 3 2.00 6 6 0 0 0 0 0
..................................................................................ACGGACCACGCTCAAGACTCTGACT................................................................................................................................................ 25 0 3 1.67 5 2 0 1 2 0 0
.................................................................................................................................................................................................................TCAGTAGTTCATGGACTCGTATGCT................. 25 0 2 1.50 3 1 0 2 0 0 0
..........................................................................................................................................................................TGTAGCCGGCGTGGCTTGCACAGGT........................................................ 25 0 2 1.50 3 3 0 0 0 0 0
................................................................................CTACGGACCACGCTCAAGACTCTGACT................................................................................................................................................ 27 0 3 1.33 4 1 0 3 0 0 0
...........................................TGGGCACACCTAATCCTCTCTATA........................................................................................................................................................................................ 24 0 3 1.00 3 3 0 0 0 0 0
.............................................................................TTTCTACGGACCACGCTCAAGACTCT.................................................................................................................................................... 26 0 3 1.00 3 2 1 0 0 0 0
...............................................................................TCTACGGACCACGCTCAAGACTCTGACT................................................................................................................................................ 28 0 3 1.00 3 1 0 2 0 0 0
.........................................CTTGGGCACACCTAATCCTCTCTATA........................................................................................................................................................................................ 26 0 3 1.00 3 3 0 0 0 0 0
.............................................................................................................................................................................................................CTGTTCAGTAGTTCATGGACTCGTAT.................... 26 0 2 1.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................................GTTCAGTAGTTCATGGACTCGTAT.................... 24 0 2 1.00 2 2 0 0 0 0 0
.....................................................................................................CTGACTCCCTCTGACGTTACTTTAAAT........................................................................................................................... 27 0 3 0.67 2 0 1 0 0 1 0
............................................GGGCACACCTAATCCTCTCTATA........................................................................................................................................................................................ 23 0 3 0.67 2 2 0 0 0 0 0
.....................GTCGGCCTTAGACCGCCACTCT................................................................................................................................................................................................................ 22 0 3 0.67 2 2 0 0 0 0 0
..............................................................................TTCTACGGACCACGCTCAAGACTCT.................................................................................................................................................... 25 0 3 0.67 2 2 0 0 0 0 0
................................ACCGCCACTCTTGGGCACACCTAATCCT............................................................................................................................................................................................... 28 0 3 0.67 2 2 0 0 0 0 0
..............................................................................................................................................................................GCCGGCGTGGCTTGCACAGGT........................................................ 21 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................AGTTCATGGACTCGTATGCTTGGT............. 24 0 2 0.50 1 0 0 1 0 0 0
................................................................................................................................................................................CGGCGTGGCTTGCACAGGTGGTGT................................................... 24 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................................................TGTAGCCGGCGTGGCTCGCACAGGT........................................................ 25 1 2 0.50 1 0 1 0 0 0 0
...................................................................................................................................................................................................................AGTAGTTCATGGACTCGTATGCT................. 23 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................GGTGTCGGGGCTGTTCAGTAGTTCAT.............................. 26 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................................GTAGCCGGCGTGGCTTGCACAGG......................................................... 23 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................AGTTCATGGACTCGTATGCTTGGTTCCT......... 28 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TGTTCAGTAGTTCATGGACTCGTAT.................... 25 0 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTCAGTAGTTCATGGACTCGTAT.................... 23 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................GGCGTGGCTTGCACAGGTGGTGT................................................... 23 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................GGTGTCGGGGCTGTTCAGTAGT.................................. 22 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................CTGTTCAGTAGTTCATGGACTCGTATG................... 27 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................AGTTCATGGACTCGTATGCTT................ 21 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................TACTTTAAATAGCGCAATCCCTATGT........................................................................................................... 26 0 2 0.50 1 0 0 0 1 0 0
........................................................................................................................................................................................................CGGGGCTGTTCAGTAGTTCATGGAC.......................... 25 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................GGTGTCGGGGCTGTTCAGT..................................... 19 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................................CGGGGCTGTTCAGTAGTTCATGGACT......................... 26 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TGTTCAGTAGTTCATGGACTCGTATG................... 26 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................................TTAGCCGGCGTGGCTTGCACAGGT........................................................ 24 1 2 0.50 1 1 0 0 0 0 0
................................................................................CTACGGACCACGCTCAAGACT...................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
................................................................................CTACGGACCACGCTCAAGACTCT.................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
.........................................................................GCCTTTTCTACGGACCACGCTCAAGACT...................................................................................................................................................... 28 0 3 0.33 1 0 1 0 0 0 0
..............ACCAGTCGTCGGCCTTAGACCGCCACT.................................................................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0 0
TACCTGCCGCAATTACCAGTCGT.................................................................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
.........................................................CCTCTCTATATACTCGGCCTTTTCT......................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
...........................................TGGGCACACCTAATCCTCTCTATATACT.................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0
...........................................................................CTTTTCTACGGACCACGCTCAAGACT...................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
........................................................................................................ACTCCCTCTGACGTTACTTTAAATAG......................................................................................................................... 26 0 3 0.33 1 0 0 0 0 1 0
...................................................................................CGGACCACGCTCAAGACTCTGACT................................................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0
...............................................................................TCTACGGACCACGCTCAAGACTCT.................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
................................................................................................AGACTCTGACTCCCTCTGACGTT.................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
....................................................................................GGACCACGCTCAAGACTCTGACT................................................................................................................................................ 23 0 3 0.33 1 1 0 0 0 0 0
.........CGATTACCAGTCGTCGGGC............................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
................................................................................CTACGGACTACGCTCAAGACTCTGAC................................................................................................................................................. 26 1 3 0.33 1 1 0 0 0 0 0
.......................CGGCCTTAGACCGCCACTCT................................................................................................................................................................................................................ 20 0 3 0.33 1 1 0 0 0 0 0
............................................................................TTTTCTACGGACCACGCTCAAGACTCT.................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
...................TTGTCGGCCTTAGACCGCCACTCT................................................................................................................................................................................................................ 24 1 4 0.25 1 1 0 0 0 0 0
.....................GTCGGCGTTAGACCGACACTAT................................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 1
................................ACCGCCACTCTTGGGCACACCTAAT.................................................................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0
..........................CTTTAGACCGCTACTCATGG............................................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0 0
...............................................................................................................................................................GGAACCGCCGTTGTAGTCGGC....................................................................... 21 3 10 0.10 1 1 0 0 0 0 0
................CTGTCATCGGCCTTAGATC........................................................................................................................................................................................................................ 19 3 13 0.08 1 1 0 0 0 0 0
............TTCCAAGACGTCGGCCTTA............................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_263:8566-8816 + dps_1924 ATGGACGGCGTTAATGGTCAGCAGCCGGAATCTGGCGGTGAGAACCCGTGTGGATTAG-GAGAGATATATGAGCCGGAAAAGATGCCTGGTGCGAGTTCTGAGACTGAGGGAGACTGCAATGAAATTTATCGCGTTAGGGATACAAAAATATAGATGTGATCTCGGCGGCAACATCGGCCGCACCGAACGTGTCCACCACAGCCCCGACAAGTC-ATCAAGTACCTGAGCATACGAACCAAGGAGGAGGGGTG
droPer2 scaffold_43:164810-165056 + ATGGACGGCGTTAATGGTCAGCAGCCGGAATCTGGCGGTGAGAACCCGTGTGGATTAG-GAGAGATATATGAGCCGGAAAAGATGCCTGGTGCGAGTTCTGAGACTGAGGGAGACTGCAATGAAATTTATCGCGTTAGGGATACAAAAATATAGATGTGATCTCGGCGGCAACATCG----AACCGAACGTGTCCACCACAGCCCCGACAAGTC-ATCAAGTACCTGAGCATACGAACCAAGGAGGAGGGGTG
droBip1 scf7180000391942:20077-20141 - GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCAGAACTTCCGTGCCACAGTCGAAGTAAGTCGACTAAGCACCTATTTGAACGACCCGA------------
droBia1 scf7180000302414:82643-82792 - AT----------------------------------------------------------------------------------GTCTGTTACGAGTTCTGCAGCACAAGGACGACGCGTGAATTTGGATCGCGTTAGTGATACAC--ACAGTGGCGTGATCGTGGCGATTACTTCGACCGCACGTAACATGCCAATCGTAACATCCACAGGTC-GGCAGGAAGC--AGCACACGGA----------------
droTak1 scf7180000412698:1465-1695 + ATGGATGACGCAAGTGATCAACAGACCGGAGTGGAGACTGGGAACCTCAGCGAATTAATGGGAAACAT----TCCAGGCTCAATGTCTGTTTCGAGTTCTGCGGCACAAGGAGGACGTTTGGACTTGGATCGCGTTAGTGATACGT--ACAGTGGCGTGATCACGGCGGTTACATCGACCGCACCTAACGTGCCAATCGTAGCATCCACATGTC-AGCAGGTAGCAGCACACAGGAAC---------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATGGACGGCGTTAATGGTCAGCAGCCGGAATCTGGCGGTGAGAACCCGTGTGGATTAG-GAGAGATATATGAGCCGGAAAAGATGCCTGGTGCGAGTTCTGAGACTGAGGGAGACTGCAATGAAATTTATCGCGTTAGGGATACAAAAATATAGATGTGATCTCGGCGGCAACATCGGCCGCACCGAACGTGTCCACCACAGCCCCGACAAGTC-ATCAAGTACCTGAGCATACGAACCAAGGAGGAGGGGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAGGGG..2623.5070000000340
...............................................................................................................................................................................................................................CCTGAGCATACGAACCAAGGAGG.......2322.5050500000000
...............................................................................................................................................................................................................................CCTGAGCATACGAACCAAGGAG........2221.5030100002000
.................................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAGGG...2521.0020000000200
.................................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAGG....2421.0020000000020
...............................................................................................................................................................................................................................CCTGAGCATACGAACCAAGGAGGA......2421.0020200000000
.................................................................................................................................................................................................................................TGAGCATACGAACCAAGGAGGAG.....2321.0020000000110
..............................................................................................AGTTCTGAGACTGAGGGAGAC..........................................................................................................................................2131.0030300000000
......................................................................................................................................................ATAGATGTGATCTCGGCGGCAAC................................................................................23160.941502000012100
.....................................................................................................................................................TATAGATGTGATCTCGGCGGCAAC................................................................................24160.75120000000390
.................................................................................................TCTGAGACTGAGGGAGACTGCAA.....................................................................................................................................2330.6720000000200
.......................................................................................................................................................................................................................................TACGAACCAAGGAGGAGGGGT.2120.5010000000100
.....................................................................................................................................................................................................................................CATACGAACCAAGGAGGAGGGG..2220.5010100000000
................................................................................................................................................................................................................................CTGAGCATACGAACCAAGGAGGA......2320.5010100000000
......................................................................................................................................................................................................................................ATACGAACCAAGGAGGAGGGG..2120.5010100000000
.......................................................................................................................................................................................................................................TACGAACCAAGGAGGAGGGG..2020.5010100000000
......................................................................................................................................................ATAGATGTGATCTCGGCGG....................................................................................19200.4590800000010
......................................................................................................................................................ATAGATGTGATCTCGGCGGC...................................................................................20200.4080000000170
..................................................TGGATTAG-GAGAGATATATGAGCC..................................................................................................................................................................................2430.3310100000000
.................................................................................................TCTGAGACTGAGGGAGACTG........................................................................................................................................2030.3310100000000
......................................TGAGAACCCGTGTGGATTAG-GAGAGA............................................................................................................................................................................................2630.3310100000000
.........................................GAACCCGTGTGGATTAG-GAGAG.............................................................................................................................................................................................2230.3310100000000
................GTCAGCAGCCGGAATCTGGCGG.......................................................................................................................................................................................................................2230.3310100000000
...GACGGCGTTAATGGTCAGCAGCCG..................................................................................................................................................................................................................................2430.3310000001000
............................................................................................CGAGTTCTGAGACTGAGGGAGA...........................................................................................................................................2230.3310100000000
..................................................................................................CTGAGACTGAGGGAGACTGCAAT....................................................................................................................................2330.3310100000000
........................................AGAACCCGTGTGGATTAG-GAGAGA............................................................................................................................................................................................2430.3310100000000
............................................................................................CGAGTTCTGAGACTGAGGGAGACT.........................................................................................................................................2430.3310100000000
......................................................TTAG-GAGAGATATATGAGCCGGA...............................................................................................................................................................................2330.3310100000000
............................................................................................CGAGTTCTGAGACTGAGGGAGACTGCA......................................................................................................................................2730.3310100000000
............................................................................................CGAGTTCTGAGACTGAGGGAGACC.........................................................................................................................................2430.3310000000010
...............................................................................................GTTCTGAGACTGAGGGAGACT.........................................................................................................................................2130.3310100000000
...................................................................................TGCCTGGTGCGAGTTCTGAGACTGAGG...............................................................................................................................................2730.3310100000000
.........................................................G-GAGAGATATATGAGCCGGAAAAGA..........................................................................................................................................................................2530.3310100000000
...................................................................................TGCCTGGTGCGAGTTCTGAGAC....................................................................................................................................................2230.3311000000000
......................................TGAGAACCCGTGTGGATTAG-GAG...............................................................................................................................................................................................2330.3310000000010
....................................................GATTAG-GAGAGATATATGAGCCGGA...............................................................................................................................................................................2530.3310100000000
.....................................................ATTAG-GAGAGATATATGAGCCGG................................................................................................................................................................................2330.3310100000000
...........TAATGGTCAGCAGCCGGAATCTGGCGG.......................................................................................................................................................................................................................2730.3310100000000
............................................................................................CGAGTTCTGAGACTGAGGGAGAC..........................................................................................................................................2330.3310100000000
.............................................................................................GAGTTCTGAGACTGAGGGAGA...........................................................................................................................................2130.3310100000000
......................................................................................................................................................ATAGATGTGATCTCGGCGGCAA.................................................................................22200.3060100000320
......................................................................................................................................................ATAGATGTGATCTCGGCGGCAACA...............................................................................24160.2540100000030
.....................................................................................................................................................TATAGATGTGATCTCGGCGGCAA.................................................................................23200.1530000000210
.....................................................................................................................................................TATAGATGTGATCTCGGCGGC...................................................................................21200.1530000000030
......................................................................................................................................................ATAGATGTGATCTCGGCGGCA..................................................................................21200.1530000000030
......................................................................................................................................................ATAGATGTGATCTCGGCG.....................................................................................18200.1530300000000
.......................................................................................................................................................TAGATGTGATCTCGGCGGCAACA...............................................................................23160.1320000000110
.....................................................................................................................................................TATAGATGTGATCTCGGCGGCAACA...............................................................................25160.1320000000110
.....................................................................................................................................................TATAGATGTGATCTCGGCGG....................................................................................20200.1020200000000
.......................................................................................................................................................TAGATGTGATCTCGGCGGCAAC................................................................................22160.0610000000100
......................................................................................................................................................ATAGATGTGATCTCGGCGAA...................................................................................20200.0510100000000
......................................................................................................................................................ATAGATGTGATCTCGGCAT....................................................................................19200.0510100000000
.....................................................................................................................................................TATAGATGTGATCTCGGCGGCA..................................................................................22200.0510000000010
.......................................................................................................................................................TAGATGTGATCTCGGCGGCA..................................................................................20200.0510000000001
droPer2
ATGGACGGCGTTAATGGTCAGCAGCCGGAATCTGGCGGTGAGAACCCGTGTGGATTAG-GAGAGATATATGAGCCGGAAAAGATGCCTGGTGCGAGTTCTGAGACTGAGGGAGACTGCAATGAAATTTATCGCGTTAGGGATACAAAAATATAGATGTGATCTCGGCGGCAACATCG----AACCGAACGTGTCCACCACAGCCCCGACAAGTC-ATCAAGTACCTGAGCATACGAACCAAGGAGGAGGGGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................ATATAGATGTGATCTCGGCGGCA..................................................................................23200.102200000
...............................................................................................GTTCTGAGACTGAGGGAG............................................................................................................................................18200.051000001
........................................................................................GGTGCGAGTTCTGAGACTGAGGGAGG...........................................................................................................................................26200.051000001
droBip1
GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCAGAACTTCCGTGCCACAGTCGAAGTAAGTCGACTAAGCACCTATTTGAACGACCCGA------------SizeHit CountTotal NormTotal
No Reads
droBia1
AT----------------------------------------------------------------------------------GTCTGTTACGAGTTCTGCAGCACAAGGACGACGCGTGAATTTGGATCGCGTTAGTGATACAC--ACAGTGGCGTGATCGTGGCGATTACTTCGACCGCACGTAACATGCCAATCGTAACATCCACAGGTC-GGCAGGAAGC--AGCACACGGA----------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATGGATGACGCAAGTGATCAACAGACCGGAGTGGAGACTGGGAACCTCAGCGAATTAATGGGAAACAT----TCCAGGCTCAATGTCTGTTTCGAGTTCTGCGGCACAAGGAGGACGTTTGGACTTGGATCGCGTTAGTGATACGT--ACAGTGGCGTGATCACGGCGGTTACATCGACCGCACCTAACGTGCCAATCGTAGCATCCACATGTC-AGCAGGTAGCAGCACACAGGAAC---------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 02:13 AM