dps_1912

exon [dpse_GLEANR_6965:7]; exon [dpse_GLEANR_6965:6]; CDS [Dpse\GA20251-cds]; CDS [Dpse\GA20251-cds]; intron [Dpse\GA20251-in]

Name	Class	Family	Strand
Helitron-2N1_DVir	RC	Helitron	-

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATTTCGCCACTACAGGATCCCAATGAAGCTCTGATCGGCATTTTTAATAAGTAAGTAGAGTATTTTTATATCCGGTACTCAAGGAGCACAGAAGGAGGCGCTTCCGAACCCGTAAAGTAATTTTATTCTTAGCCAGCATCAATGGCCGATTCGACATTGCGATGTCTGTCTGTCAGTCTTCTCGTTCCGTTAGTTATTCCGTAGTTATTGCCAAATTTGAGTCTTTCCCCTTTGAATGCAAAATATAACCGAAATTATGTATAATAATACCTGTTCCCCAGGAATTTGAAGGGCAAGGTCGGCGCTGGAAGCTTCCTGGTGCTGTTAATTG ************************************************.....(((.(((((.((((((.(((.(((...(((((..((((((.(((((((.((....))..)))).............((((.......)))).(((..(((((....))))).))).)))..)))))).)))))...)))....)))..((((((((((((...((.....))...))))...)))....))))).........)))))).))))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM343916 embryo
.....................................................................................................................................................................................................................................................................................................CAAGGTCGTCGCGGTAAGCT..................	20	3	2	1.00	2	2	0	0
......................................................................................................................................................................................................................ATTTGAGTGTTTCCCCTTTA.................................................................................................	20	2	1	1.00	1	1	0	0
....................................................................................AGCACAGAAGGAGGCGCTTCCG.................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0
..............................................................................................................................................................................................................................................................................................TCAAGAGCAAGGTCGGCG...........................	18	2	8	0.13	1	1	0	0
.....................................................................................................................................................................................................................................................................................................CAAGGTCGTCGCGGTAAGC...................	19	3	12	0.08	1	0	1	0
..................................TCGGCATTTTAAATAAGC.......................................................................................................................................................................................................................................................................................	18	2	17	0.06	1	1	0	0
..............................................................................................................................TCATAGCCAGCATCGATGGG.........................................................................................................................................................................................	20	3	20	0.05	1	0	0	1
............................................................................................................................................................................................................................................................................................TTTGAAGTGTAAGGACGGC............................	19	3	20	0.05	1	1	0	0

TAAAGCGGTGATGTCCTAGGGTTACTTCGAGACTAGCCGTAAAAATTATTCATTCATCTCATAAAAATATAGGCCATGAGTTCCTCGTGTCTTCCTCCGCGAAGGCTTGGGCATTTCATTAAAATAAGAATCGGTCGTAGTTACCGGCTAAGCTGTAACGCTACAGACAGACAGTCAGAAGAGCAAGGCAATCAATAAGGCATCAATAACGGTTTAAACTCAGAAAGGGGAAACTTACGTTTTATATTGGCTTTAATACATATTATTATGGACAAGGGGTCCTTAAACTTCCCGTTCCAGCCGCGACCTTCGAAGGACCACGACAATTAAC ************************************************.....(((.(((((.((((((.(((.(((...(((((..((((((.(((((((.((....))..)))).............((((.......)))).(((..(((((....))))).))).)))..)))))).)))))...)))....)))..((((((((((((...((.....))...))))...)))....))))).........)))))).))))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343916 embryo	V112 male body
.........................................................................................................................AAATTAGAATCGGTAGTA................................................................................................................................................................................................	18	2	14	0.07	1	1	0
........................................................................................................................AAAATTGGAGTCGGTCGTA................................................................................................................................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
dp5	Unknown_group_260:24726-25056 -	dps_1912	ATTTCG-CCACTACA--------GGATCCCAATGAAGCTC--------------TGA------TCGG-CATTTTTAATAAGT-------------------AAGTA--GAGTATTTTTATATCCG--------------------------------------GTACTCAAGGAGCACAGAAGGAGGCGCTTCCGAACCCGTAAAGTAATTTTATTCTTAGCCAGCATCAATGGCCGATTCGACATTGCGATGTCTGTCTGTCAGTCTTCTCGTTC---CGTTAGTTATTCCGTAGTTAT---TGCCAAA------------------TTTGAGTCTTTCCCCTTTGAA-------------------------------------------TGCAAAATAT-------AACCGAAATTATGTATAATAATAC---CTGTTCCC-CAGGAATTTGAAGGGCAAGGTCGGCGCTGGAAGCTTCCTGGTGC-------TGTTAATTG
droPer2	scaffold_1:739060-739391 -		ATTTCG-CCACTACA--------GGATCCCAATGAAGCTC--------------TGA------TCGG-CATTTTTAATAAGT-------------------AAGTA--GAGTATTTTTATATCCG--------------------------------------GTACTCAAGGAGCACAGAAGGAGGCGCTTCCCACCCCGTAAAGTATTTTTATTCTTAGCCAGCATCAATGGCCGGTTCGACATTGCGATGTCTGTCTGTCAGTCTTCTCGTTC---CGTTAGTTATTCCGTAGTTAT---TGCCAAA------------------TTTGAGTCTTTCCCCTTTGAA-------------------------------------------TGCAAAATAT-------AACCAAAATTATGTATAATTATAC---CTGTTCCCCCAGGAATTTGAAGGGAAAGGTCGGCGCTGGAAGCTTCCTGGTGC-------TGTTAATTG
droWil2	scf2_1100000004516:3917346-3917543 -		ATTA---------TA-------------------GAGTCTCAATCGGGG---TCGGT------T-T-A--------------------AATTTTTATACCCTTGCAGAGGG----------------------------------TATTATAAAATTGGTCAGATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATAAGAAGCTGAGTTGATATAGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTCCGTCTG----TCCGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13560:100017-100230 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATAGAAGGAGACATCTCCGACCCCATAAAGTATCTATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCTTGTCCGTCTGTCCGTCTGTCCGTCTGTCTG-----------------------------------TTTCTATGCGAACT--AGTCCCTCAGTTTTAAAGCTATCT---------------------------------------TAAAAAA-------AATTAAGTTTTTGTATGAAAAAACATTTTGTTTAT-CAAG-ATATGTTGACCAAACTCGGCACT--------------------------------
droMoj3	scaffold_322:945-1132 +		ATTC---------TA----------------GTTATACCC--------------TGA------AC-C-CATTTTCAATGGGA-------------------AATCA--GGG----------------------------------TATAATGGTTTTGTTGAAATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATATTCTTGACCAGGGCGACGAGCTGAGTTGATTTGGCCCTGTCCGTCTGTCCGTCTGTCCGTCCGTCCGTCTG----TCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14906:6030446-6030595 +		TTCC---------A-----------------ATGACATTT--------------TGT------T-AT-GATTTTAACTGGGT-------------------AAAAA--GTG----------------------------------TAT--------------AATGTATGTAACAGGCAGAAAAAAGCACCTCGGAACCCATAAAGTATATATATTCTTGATCAGGGTCAACAGCCGAGTCGACATAGGCATGTCCGTCCGTCCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13099:2158588-2158817 +		TCGG---------C-------------------------------------------------------ATTTTTTTTTAGGGAATCGCATTTTTATACCCTTGCAGAGGG----------------------------------TATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATTTCCGACCCTAAAAAGTATATTTATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTCTGTCCGTCTG----TCTGTC---------------TGTCGGTTTTTACGCAAACT--AGTCTCTCAGTTTTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395326:36124-36331 -		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGAAGGAGGCATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGACCATGTCCGTCTGTCCGTCTGTCTGTCTG---------------------------------------TTTCTACGCGAACT--AGTCTCTCAGTTTTAAAGCTATCGACTTGAAACTTTGCACACACCCTTCTTTCCTTTGCACACAGTATATA------AGTCGGAACTCTATGTTATA----------------------------------------------------------------------------
droKik1	scf7180000302367:64034-64296 -		GCCA---------CAACTGAAGTGACTCCC-AGAGAGCTC--------------CAA------T----CAT-------------------TTTTTATACCCTTGCA--GGG----------------------------------TATTATAATTTCAGTCAGAAGTTTACAACGCAGTGAAGAAGACGTGTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCTG----TCCGTC---------------TGTCTGTTTCTACGCAAACT--AGTCCCTCAGTTTTAAAGCTATCTAAATGAAAC-----------------------------------------------------TTTGCATA-------------------------------------------------------------------------------
droFic1	scf7180000452761:24365-24564 -		ATAT---------T-----------------T--CAG-----------AAATAAGG---------C-T--------------------TATTTTTATACCATTGCAGAG----------------------------CAAAAGG-TATTATAAT----------------------GGTGAAGGAGGCACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATTACTATCAGAATCGAAATACGAATGTCCGTTTGTCCATCTGTCCGTATGTCCGTCTG----TCCG-----------------------TTTTTACGCAAACT--AGTCTCTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491296:14710-14953 +		ACCTGG-TCACTA-A--------GAATATTATTGAAATTT--------------TAATATAT-TCAA---------------------CATTTTTATACCCTTGCAGAGGG----------------------------------TATTATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGATACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCCGTCTGTCCGTCCG-----------------------TTTATATGCAAACT--AGTCTCTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000778054:2472-2736 -		ATTTCT-CTAC--CA--------GATTCCTCAGGTAACGC--------------TGT-----CG-A--G-------------------TTTTTTTATACCCTTGCAGAGGG----------------------------------TATTATAATTTTGGTCAGATGTTTGTAACGCAGAGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATGGGGGAGTCGATATAGCCATGTCCGTCTGTCTGT---------------------------------------------------TTCTACGCAAACT--AGTCTCTCAGTTTCAAAGCTATCGAATTGAAACTTTGCACACACCCTTCTTTCCTTTGCACGCAGTATAT-------AA----------------------------------------------------------------------------------------------
droBia1	scf7180000301362:12906-13106 +		TCCA---------C-------------------------------------------------TTGG---------------------CATTTTTATACCCTTGCAGAGGG----------------------------------TATT------TCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCGTCACAAGACAAGTCGATCTAGCCATGTCCTTCTGTCCGTCCGCCTTTCCGTCTGTCCG----TCCG-----------------------TTTTTACGCAAACT--AGTCTTTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000413249:21166-21405 +		ATTTCTTTAGCTACAAT------GGATTTTACAGAAGTAC--------------TTT------TTGT-CAC-------------------TTTTTATACCCTTGTAGAGGG----------------------------------TATTATAATTTCAGTCAGATGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAAGTATATATATTCTTGATCAGCACCAATAGCCGAGTCTATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCGTCTG----TCCG-----------------------TTTCTATGCGAACT--AGTCTCTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409666:11515-11690 -		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGGAAGCGTTTCCGACCCTATAAAGAATATATATTCTTGATCAGGATCAATAGCTCAGTCGACTAAGCCATGTCCGTTTGTCCCTCCGGAAGTCTGTCCGTATG----AACGC------------TGAT------------------TTAGAGTTTGAGCAAACTTAA-------------------------------------------ATTAAAAGAA-------AATTCAATTTTTGCAAAATATGTT---CTGTT----------------------------------------------------------------
dm3	chr3L:23262302-23262490 -		TTTA---------A------------------TTATTGTAGAAT-------------------TTGA---------------------CATTATTATACCC-----------------------GTTAGTCGTAG----------------------AGTAAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGATACTATAAATTATATATATTCTTGATCGGGATCAATAGCCGAGTCGATCTAGCCTTGTCCGTCTGTCCGTATGAACGTCGAGTGGGCCA---TGCC--------------------------------CAATCT--AACGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	4:974763-974908 +		TTTT---------A-----------------AATAAATTTCAATC-------------------GT-A--------------------CCTTATTATAACC-----------------------GTTACTCGTAG--------------------------------------AG--TAAAAGGTAGATTTTCCGACCATA-AAAGTATATATATTCGTGATCAGGATCAATGGCCGACTCGATCTGGCACTGTCCGTCCGTCTGTCTGCCAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_80:19368-19520 -		TCCT---------A-----------------ATTAAGTACTAATTAGGA--------------------------------------------------------A----------------------------AAGTAAAAGGGTATATTAGATTCGTTGAAAAGTATGTAAGAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATATATATTCTTGTTCAGGATCAATAGCCGGGTCGATTCAGCCATGTCCGTCTGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chr2h_random_004:243534-243847 -		TTAT---------A-----------------A--AAG-----------G---AAAAC------A-T-A--------------------TATTTTTATACCC-----------------------GTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGTGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGTCCGTCTGTCTGTCCGTATG----AACGTC-----------GAGATCTCAGGAACTACAAAAGCT----------------------AGAAAGTTGAGATTAAGCATACAAACTCCAGGGACATA-------------------------------------------------------------TACGCAGCGCAAGTTTGTCGCCCAAAGCTGCCACGCCCACACTTTTGAAAAATG
droEre2	scaffold_4845:22531274-22531488 -		GT-------------------------------------------------------------------------------------------------------A----------------------------GAGTAAATGGGTATTTAAAATTCGCTAAGAAGTATG-------TAGAAGAACTCGTTTCCGACCCTATAAAGTATATATATTCTTAATCAGGATAAAAAGCCGATTCGATCTAGCCATGTCCGTCTGTCACTTTTTCTGTCCGTTTATGTA---TTCCGGATTTTTTTTTTTTTAA------------------ATTCAGTTTTTC--------------------------------------------------------AAATAA-AATTTTAATTTAATTTGTTTATATTAGT--------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

ATTTCG-CCACTACA--------GGATCCCAATGAAGCTC--------------TGA------TCGG-CATTTTTAATAAGT-------------------AAGTA--GAGTATTTTTATATCCG--------------------------------------GTACTCAAGGAGCACAGAAGGAGGCGCTTCCGAACCCGTAAAGTAATTTTATTCTTAGCCAGCATCAATGGCCGATTCGACATTGCGATGTCTGTCTGTCAGTCTTCTCGTTC---CGTTAGTTATTCCGTAGTTAT---TGCCAAA------------------TTTGAGTCTTTCCCCTTTGAA-------------------------------------------TGCAAAATAT-------AACCGAAATTATGTATAATAATAC---CTGTTCCC-CAGGAATTTGAAGGGCAAGGTCGGCGCTGGAAGCTTCCTGGTGC-------TGTTAATTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................AGCACAGAAGGAGGCGCTTCCG......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATTTCG-CCACTACA--------GGATCCCAATGAAGCTC--------------TGA------TCGG-CATTTTTAATAAGT-------------------AAGTA--GAGTATTTTTATATCCG--------------------------------------GTACTCAAGGAGCACAGAAGGAGGCGCTTCCCACCCCGTAAAGTATTTTTATTCTTAGCCAGCATCAATGGCCGGTTCGACATTGCGATGTCTGTCTGTCAGTCTTCTCGTTC---CGTTAGTTATTCCGTAGTTAT---TGCCAAA------------------TTTGAGTCTTTCCCCTTTGAA-------------------------------------------TGCAAAATAT-------AACCAAAATTATGTATAATTATAC---CTGTTCCCCCAGGAATTTGAAGGGAAAGGTCGGCGCTGGAAGCTTCCTGGTGC-------TGTTAATTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................GAGCACAGAAGGAGGCGCTTCCCAC....................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0

droWil2

ATTA---------TA-------------------GAGTCTCAATCGGGG---TCGGT------T-T-A--------------------AATTTTTATACCCTTGCAGAGGG----------------------------------TATTATAAAATTGGTCAGATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATAAGAAGCTGAGTTGATATAGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTCCGTCTG----TCCGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................AGCTGAGTTGATATAGCCATG............................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
.......................................................................................................................................................AAAATTGGTCAGATGTTTGTA.............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................TGTCTGTCCGTCCGTCCGTCCGTCTT----........................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................TGTCCGTCTGTCTGTCCGTCCGTCCGT...................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0

droVir3

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATAGAAGGAGACATCTCCGACCCCATAAAGTATCTATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCTTGTCCGTCTGTCCGTCTGTCCGTCTGTCTG-----------------------------------TTTCTATGCGAACT--AGTCCCTCAGTTTTAAAGCTATCT---------------------------------------TAAAAAA-------AATTAAGTTTTTGTATGAAAAAACATTTTGTTTAT-CAAG-ATATGTTGACCAAACTCGGCACT--------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CAAG-ATATGTTGACCAAACTCGGCACT--------------------------------	28	10	1.30	13	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTATCT---------------------------------------TAAAAAA-------AATTAAGTTTTTGT..................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CAAG-ATATGTTGACCAAACTCGGCAC.................................	27	10	0.80	8	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCC.............................................................................................................................................................................................................................................................................	26	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAGCCT..............................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCGAG..........................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAG...............................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCTATGCGAACT--AGTCCCTCAGTTT................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATATAG.................................................................................................................................................................................................................................................................	27	20	0.15	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAG...............................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAG.................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CGAACT--AGTCCCTCAGTTTTAAAGCT.........................................................................................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACA................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGA......................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATA....................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CAAG-ATATGTTGACCAAACTCGGC...................................	25	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCATCAACAGCCGAGTCGATATAG.................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATA..................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAGCCG............................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCGAACT--AGTCCCTCAGTTTTAA.............................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATGAAAAAACATTTTGTTTAT-............................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATA....................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCTATGCGAACT--AGTCCCTCA....................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGATA....................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCG.......................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CATCAACAGCCGAGTCGATATAGC................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGC................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CTTAATCAGCATCAACAGCCGA...........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CAAG-ATATGTTGACCAAACTCGGCA..................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCTGTCCGTCTGTCCGTCTGTCTG-----------------------------------.............................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTATGAAAAAACATTT....................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACA................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCATCAACAGCCGAGTCGATAT...................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T--AGTCCCTCAGTTTTAAAGCTATCT---------------------------------------T.............................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAGCC.............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCTATGCGAACT--AGTCCCTCAGTTTT...............................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAGC................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ATCAGCATCAACAGCCGAG..........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCATCAACAGCCGAGTCGAT.....................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AATCAGCATCAACAGCCGAGTCGA......................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TCTTAATCAGCATCAACAGCCGAGTCGA......................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGAT.....................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCTCCGACCCCATAAAGTA.........................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATAT...................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTC---------TA----------------GTTATACCC--------------TGA------AC-C-CATTTTCAATGGGA-------------------AATCA--GGG----------------------------------TATAATGGTTTTGTTGAAATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATATTCTTGACCAGGGCGACGAGCTGAGTTGATTTGGCCCTGTCCGTCTGTCCGTCTGTCCGTCCGTCCGTCTG----TCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................CGAGCTGAGTTGATTTGGC................................................................................................................................................................................................................................................................	19	20	0.30	6	0	0	0	0	0	6
..........................................................................................................................................................................................................................................CTGAGTTGATTTGGCCCTGTCCGTC......................................................................................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	5	0
............................................................................................................................................................................................................................................GAGTTGATTTGGCCCTGTCC.........................................................................................................................................................................................................................................................	20	20	0.25	5	5	0	0	0	0	0
............................................................................................................................................................................ACAGGCAGAAGGAGGCGTGG.........................................................................................................................................................................................................................................................................................................................	20	20	0.25	5	5	0	0	0	0	0
............................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCTGTCCG........................................................................................................................................................................................................................................	21	20	0.20	4	4	0	0	0	0	0
............................................................................................................................................................TGTTGAAATGTATGTAACAGGCAG.....................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................TGGCCCTGTCCGTCTGTCCGT...............................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
..............................................................................GGGA-------------------AATCA--GGG----------------------------------TATAATGG................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................AGTATATATATTCTTGACCAGGGCGA...................................................................................................................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	1	0
................................................................................................................................................................................................................TATATATTCTTGACCAGGGCGACGAG...............................................................................................................................................................................................................................................................................	26	14	0.07	1	1	0	0	0	0	0
......................................................................................................................................................................................................................TTCTTGACCAGGGCGACGAGCTGAG..........................................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	0	0	1	0
................................................................................................................................................................................................................TATATATTCTTGACCAGGGCG....................................................................................................................................................................................................................................................................................	21	16	0.06	1	1	0	0	0	0	0
........................................................................................................................................................................................AGGCGTGGCAGACCCCATAAAG...........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................................TGTTGAAATGTATGTAACAGGCAGAAG..................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.............................................................................TGGGA-------------------AATCA--GGG----------------------------------TATAATGGTTTTG...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................AGGCAGAAGGAGGCGTGG.........................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................AAGGAGGCGTGGCAGACCCCA................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................CGAGCTGAGTTGATTTGGCCCTGTCCG........................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
....................................................................CATTTTCAATGGGA-------------------AATCA--GGG----------------------------------TAT.....................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
......................................................................TTTTCAATGGGA-------------------AATCA--GGG----------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................CAGGCAGAAGGAGGCGTGG.........................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

TTCC---------A-----------------ATGACATTT--------------TGT------T-AT-GATTTTAACTGGGT-------------------AAAAA--GTG----------------------------------TAT--------------AATGTATGTAACAGGCAGAAAAAAGCACCTCGGAACCCATAAAGTATATATATTCTTGATCAGGGTCAACAGCCGAGTCGACATAGGCATGTCCGTCCGTCCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

TCGG---------C-------------------------------------------------------ATTTTTTTTTAGGGAATCGCATTTTTATACCCTTGCAGAGGG----------------------------------TATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATTTCCGACCCTAAAAAGTATATTTATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTCTGTCCGTCTG----TCTGTC---------------TGTCGGTTTTTACGCAAACT--AGTCTCTCAGTTTTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACAT...........................................................................................................................................................................................................................................................................................................................	24	20	0.80	16	0	0	0	0	16	0
....................................................................................................................................................................................................................................CACCTCCTGAGTCGATATGAGCATGT...........................................................................................................................................................................................................................................................	26	20	0.65	13	0	13	0	0	0	0
....................................................................................................................................................................................................................................CACCTCCTGAGTCGATATGAGCATG............................................................................................................................................................................................................................................................	25	20	0.55	11	11	0	0	0	0	0
..........................................................................................................................................................................CAACGCAGTGAAGGAGACA............................................................................................................................................................................................................................................................................................................................	19	20	0.45	9	0	0	0	0	0	9
......................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACATT..........................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	2	0	2	0	0	2
......................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACATTT.........................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	1	0	1	0	2	1
......................................................................................................................................................................................................................TTCTTGATCAGGATCACCTCCTGAGT.........................................................................................................................................................................................................................................................................	26	20	0.25	5	5	0	0	0	0	0
...........................................................................................................................................................................AACGCAGTGAAGGAGACATTTC........................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	3
............................................................................................................................................................................................................................................GAGTCGATATGAGCATGTCCGTCT.....................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	3	0
............................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCTGTCTGTCTG....................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................TGCAACGCAGTGAAGGAGACATTTC........................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	1	0	1	0
................................................................................................................................................................................................................TATTTATTCTTGATCAGGATCACCTCC..............................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................................................GTCAAAAGTGTGCAACGCAGT......................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................CAACGCAGTGAAGGAGACATT..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCTGTCTGTCTGTC..................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
.......................................................................................................GCAGAGGG----------------------------------TATTATAATTTTGGTC........................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................CCGTCTG----TCTGTC---------------TGTCGGT............................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................AACGCAGTGAAGGAGACATTTCCGAC....................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGACATTTC........................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................TGAAGGAGACATTTCCGACCC..................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................GCAACGCAGTGAAGGAGACA............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................CACCTCCTGAGTCGATATGAGCAT.............................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................AAAAGTGTGCAACGCAGTGA....................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................CAGTGAAGGAGACATTTCCGAC....................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................AAGTGTGCAACGCAGTGAAGGAGACATT..........................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................GCAACGCAGTGAAGGAGACATTTCCG......................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................TATTCTTGATCAGGATCACCTC...............................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droBip1

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGAAGGAGGCATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGACCATGTCCGTCTGTCCGTCTGTCTGTCTG---------------------------------------TTTCTACGCGAACT--AGTCTCTCAGTTTTAAAGCTATCGACTTGAAACTTTGCACACACCCTTCTTTCCTTTGCACACAGTATATA------AGTCGGAACTCTATGTTATA----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCA---------CAACTGAAGTGACTCCC-AGAGAGCTC--------------CAA------T----CAT-------------------TTTTTATACCCTTGCA--GGG----------------------------------TATTATAATTTCAGTCAGAAGTTTACAACGCAGTGAAGAAGACGTGTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCTG----TCCGTC---------------TGTCTGTTTCTACGCAAACT--AGTCCCTCAGTTTTAAAGCTATCTAAATGAAAC-----------------------------------------------------TTTGCATA-------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATAT---------T-----------------T--CAG-----------AAATAAGG---------C-T--------------------TATTTTTATACCATTGCAGAG----------------------------CAAAAGG-TATTATAAT----------------------GGTGAAGGAGGCACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATTACTATCAGAATCGAAATACGAATGTCCGTTTGTCCATCTGTCCGTATGTCCGTCTG----TCCG-----------------------TTTTTACGCAAACT--AGTCTCTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACCTGG-TCACTA-A--------GAATATTATTGAAATTT--------------TAATATAT-TCAA---------------------CATTTTTATACCCTTGCAGAGGG----------------------------------TATTATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGATACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCCGTCTGTCCGTCCG-----------------------TTTATATGCAAACT--AGTCTCTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTTCT-CTAC--CA--------GATTCCTCAGGTAACGC--------------TGT-----CG-A--G-------------------TTTTTTTATACCCTTGCAGAGGG----------------------------------TATTATAATTTTGGTCAGATGTTTGTAACGCAGAGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATGGGGGAGTCGATATAGCCATGTCCGTCTGTCTGT---------------------------------------------------TTCTACGCAAACT--AGTCTCTCAGTTTCAAAGCTATCGAATTGAAACTTTGCACACACCCTTCTTTCCTTTGCACGCAGTATAT-------AA----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCA---------C-------------------------------------------------TTGG---------------------CATTTTTATACCCTTGCAGAGGG----------------------------------TATT------TCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCGTCACAAGACAAGTCGATCTAGCCATGTCCTTCTGTCCGTCCGCCTTTCCGTCTGTCCG----TCCG-----------------------TTTTTACGCAAACT--AGTCTTTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTTCTTTAGCTACAAT------GGATTTTACAGAAGTAC--------------TTT------TTGT-CAC-------------------TTTTTATACCCTTGTAGAGGG----------------------------------TATTATAATTTCAGTCAGATGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAAGTATATATATTCTTGATCAGCACCAATAGCCGAGTCTATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCGTCTG----TCCG-----------------------TTTCTATGCGAACT--AGTCTCTCAGTTTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGGAAGCGTTTCCGACCCTATAAAGAATATATATTCTTGATCAGGATCAATAGCTCAGTCGACTAAGCCATGTCCGTTTGTCCCTCCGGAAGTCTGTCCGTATG----AACGC------------TGAT------------------TTAGAGTTTGAGCAAACTTAA-------------------------------------------ATTAAAAGAA-------AATTCAATTTTTGCAAAATATGTT---CTGTT----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTA---------A------------------TTATTGTAGAAT-------------------TTGA---------------------CATTATTATACCC-----------------------GTTAGTCGTAG----------------------AGTAAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGATACTATAAATTATATATATTCTTGATCGGGATCAATAGCCGAGTCGATCTAGCCTTGTCCGTCTGTCCGTATGAACGTCGAGTGGGCCA---TGCC--------------------------------CAATCT--AACGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................ATATATTCTTGATCGGGAT.....................................................................................................................................................................................................................................................................................	19	8	10.88	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	8	26	10	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCTGTCCGTATGAACGTCGAGTGGGC..............................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TATATATTCTTGATCGGGAT.....................................................................................................................................................................................................................................................................................	20	7	6.86	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	6	10	8	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTATGAACGTCGA....................................................................................................................................................................................................................................	26	20	6.40	128	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	6	0	0	5	0	0	0	0	0	0	1	11	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCCGTCTGTCCGTATGAACGTCGAGT..................................................................................................................................................................................................................................	26	2	6.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TATATATATTCTTGATCGGGA......................................................................................................................................................................................................................................................................................	21	5	4.60	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	6	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0
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droSim2

TTTT---------A-----------------AATAAATTTCAATC-------------------GT-A--------------------CCTTATTATAACC-----------------------GTTACTCGTAG--------------------------------------AG--TAAAAGGTAGATTTTCCGACCATA-AAAGTATATATATTCGTGATCAGGATCAATGGCCGACTCGATCTGGCACTGTCCGTCCGTCTGTCTGCCAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................ATATATTCGTGATCAGGATCA...................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTATAACC-----------------------GTTACTCGTAG--------------------------------------AG--TAAA....................................................................................................................................................................................................................................................................................................................................	25	10	0.20	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................ACTCGTAG--------------------------------------AG--TAAAAGG.................................................................................................................................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................TATAACC-----------------------GTTACTCGTAG--------------------------------------AG--TAAAAGG.................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTATAACC-----------------------GTTACTCGTAG--------------------------------------AG--........................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................C-----------------------GTTACTCGTAG--------------------------------------AG--TA......................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TCCT---------A-----------------ATTAAGTACTAATTAGGA--------------------------------------------------------A----------------------------AAGTAAAAGGGTATATTAGATTCGTTGAAAAGTATGTAAGAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATATATATTCTTGTTCAGGATCAATAGCCGGGTCGATTCAGCCATGTCCGTCTGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................GTATATATATTCTTGTTCAGGATCA...................................................................................................................................................................................................................................................................................	25	5	0.40	2	2	0	0	0
..........................................................................................................................................................TTCGTTGAAAAGTATGTAAGAGGCA......................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0

droYak3

TTAT---------A-----------------A--AAG-----------G---AAAAC------A-T-A--------------------TATTTTTATACCC-----------------------GTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGTGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGTCCGTCTGTCTGTCCGTATG----AACGTC-----------GAGATCTCAGGAACTACAAAAGCT----------------------AGAAAGTTGAGATTAAGCATACAAACTCCAGGGACATA-------------------------------------------------------------TACGCAGCGCAAGTTTGTCGCCCAAAGCTGCCACGCCCACACTTTTGAAAAATG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................T----------------------AGAAAGTTGAGATTAAGCATACAAAC...............................................................................................................................	27	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T----------------------AGAAAGTTGAGATTAAGC.......................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGTAACAGGCAGAAGGAAGTGTTTC........................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GACATA-------------------------------------------------------------TACGCAGCGCAAGTTTGTCG..................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................AACAGGCAGAAGGAAGTGTTTCCGAC....................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGATTAAGCATACAAACTCCAGGGAC......................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TGAGATTAAGCATACAAACTCCAGGGAC......................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGGAACTACAAAAGCT----------------------AGAAAGTT.................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................GCAGAAGGAAGTGTTTCCGACC...................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GTCCGTCCGTCTGTCTGTCCGT...............................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................GTTGAAAAGTATGTAACAGGCAGAAGG.................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................ATTAAGCATACAAACTCCAGGGACA.....................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AGGCAGAAGGAAGTGTTTCCGACC...................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GT-------------------------------------------------------------------------------------------------------A----------------------------GAGTAAATGGGTATTTAAAATTCGCTAAGAAGTATG-------TAGAAGAACTCGTTTCCGACCCTATAAAGTATATATATTCTTAATCAGGATAAAAAGCCGATTCGATCTAGCCATGTCCGTCTGTCACTTTTTCTGTCCGTTTATGTA---TTCCGGATTTTTTTTTTTTTAA------------------ATTCAGTTTTTC--------------------------------------------------------AAATAA-AATTTTAATTTAATTTGTTTATATTAGT--------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dps_1912

Unknown_group_260:24776-25006 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.2	-37.2	-37.1