ID:

dps_191

 Coordinate:

Unknown_group_66:26897-26986 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.5 -23.5 -23.5 -23.3

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Hopers2DNAhAT-hobo+
mature
  1. Unknown_group_98:15493-15515 -
  2. dps_191  Unknown_group_66:26897-26919 +
star

Sense Strand Reads

AGATCTAACAGAAGTGCGGATACCAAATTTGGTTACTCTAGCCTTAACAGTCTCTGAGATTTGTGAATGCCCCAGAATTTCGTCCTTTGCGTGGTCGAAAGGCTGCGTGGCGAAATTTTCACGCAAAAGGGTCAAGATCCGATATCGCAGTATTGTGGATACCAAATTTGTTTGCTCTGGCTCTTATAGA
***********************************.....................((((((.....((((.(((..(((((.((.......)).)))))..)))...))))))))))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
 GSM343916
embryo
 V112
male body		 SRR902012
CNS imaginal disc
 SRR902011
testis
 M022
male body		 GSM444067
head
..................................................TCTCTGAGATTTGTGAATGCCCC..................................................................................................................... 23 0 2 33.00 66 55 7 4 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCC...................................................................................................................... 22 0 2 18.00 36 32 3 1 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAGAAT................................................................................................................ 28 0 1 16.00 16 14 2 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAGAA................................................................................................................. 27 0 1 15.00 15 13 0 2 0 0 0 0 0 0
....................TACCAAATTTGGTTACTCTAGCCT.................................................................................................................................................. 24 0 20 12.40 248 248 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCC....................................................................................................................... 21 0 3 12.33 37 28 4 2 3 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAG................................................................................................................... 25 0 2 9.00 18 18 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCA.................................................................................................................... 24 0 2 9.00 18 16 1 1 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAGA.................................................................................................................. 26 0 2 8.50 17 17 0 0 0 0 0 0 0 0
..............................................................................TTCGTCCTTTGCGTGGTCGAAAGGC....................................................................................... 25 0 1 8.00 8 8 0 0 0 0 0 0 0 0
...............................................................................TCGTCCTTTGCGTGGTCGAAAGGC....................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................................................TCCTTTGCGTGGTCGAAAGGCTGC.................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0 0 0
..............................................................................TTCGTCCTTTGCGTGGTCGAAAGG........................................................................................ 24 0 2 4.00 8 8 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAGAAA................................................................................................................ 28 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGC........................................................................................................................ 20 0 3 2.33 7 4 3 0 0 0 0 0 0 0
...........................................................................................................................................................TGGATACCAAATTTGTTTGCTCTGGC......... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0
......................................................TGAGATTTGTGAATGCCCCAGAATT............................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................CAGTCTCTGAGATTTGTGAATGCCC...................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAGAATT............................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................TCACGCAAAAGGGTCAAGATCCGATA.............................................. 26 0 2 2.00 4 3 0 1 0 0 0 0 0 0
..............................................................................TTCGTCCTTTGCGTGGTCGAAAG......................................................................................... 23 0 2 1.50 3 3 0 0 0 0 0 0 0 0
...................................................CTCTGAGATTTGTGAATGCCCCA.................................................................................................................... 23 0 2 1.50 3 3 0 0 0 0 0 0 0 0
..................................................TCCCTGAGATTTGTGAATGCCCCAGAA................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................ACAGTCTCTGAGATTTGTGAATGCCCC..................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TACCAAATTTGTTTGCTCTGGCTC....... 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................TTCACGCAAAAGGGTCAAGATCCGATA.............................................. 27 0 2 1.00 2 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................TACCAAATTTGTTTGCTCTGGCTCT...... 25 0 2 1.00 2 1 0 1 0 0 0 0 0 0
..............................................................................................TCGAAAGGCTGCGTGGCGAAATTT........................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAGAATA............................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................GATATCGCAGTATTGTGGATACC........................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TCCGATATCGCAGTATTGTGGATACC........................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAAA.................................................................................................................. 26 1 2 1.00 2 0 2 0 0 0 0 0 0 0
................................................................................................................................................TCGCAGTATTGTGGATACCAAAT....................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................TCAGATTTGTGAATGCCCCAGAATT............................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................TCTGAGATTTGTGAATGCCCCAG................................................................................................................... 23 0 2 1.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................TATCGCAGTATTGTGGATAC............................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GCTCTGAGATTTGTGAATGCCCCAGAA................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................CTCTGAGATTTGTGAATGCCCCAGAA................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................AATTTCGTCCTTTGCGTGGTC.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................CGTCCTTTGCGTGGTCGAAAGGC....................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................TGAGATTTGTGAATGCCCCAGAAT................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................CTGAGATTTGTGAATGTCCCAGAAT................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TACCAAATTTGTTTGCTCTGGCTCTTA.... 27 0 2 1.00 2 0 2 0 0 0 0 0 0 0
..............................................................................................TCGAAAGGCTGCGTGGCGAAA........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................GTCTCTGAGATTTGTGAATGCCC...................................................................................................................... 23 0 2 1.00 2 1 1 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCGCAGAA................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................TTTCGTCCTTTGCGTGGTCGAAAGGC....................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................AACGCTGCGTGGCGGAATTTTCAC.................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................TGCGTGGTCGAAAGGCTG..................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................ATACCAAATTTGTTTGCTCTG........... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................AAAGGCTGCGTGGCGAAATTT........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................AAAGGCTGCGTGGCGAAATT......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................ACCAAATTTGGTTACTCTAGCCTTAACAG............................................................................................................................................ 29 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................TTTGCGTGGTCGAAAGGCTA..................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................CAGTTTCTGAGATTTGTGAATGCCC...................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................TGCGTGGTCGAAAGGCTGCGTGGC............................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................TCGAAAGGCTGCGTGGCGAAATT......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................CGATATCGCAGTATTGTGGATACCA.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................GATACCAAATTTGTTTGCTCTGGC......... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................CTCTGAGATTTGTGAATGCCCCAG................................................................................................................... 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................CGATATCGCAGTATTGTGGATAACAA......................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................TGGTCGAAAGGCTGCGTGGCGAAATT......................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................TCCTTTGCGTGGTCGAAAGGCTG..................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................GGTCGAAAGGCTGCGTGGCGAAATTT........................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
AGATCTAACAGAAGTGCGGAT......................................................................................................................................................................... 21 0 20 0.95 19 9 0 0 0 9 0 0 1 0
...................................................CTCTGAGATTTGTGAATGC........................................................................................................................ 19 0 3 0.67 2 2 0 0 0 0 0 0 0 0
............................TTGGTTACTCTAGCCTTAACAG............................................................................................................................................ 22 0 3 0.67 2 2 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATG......................................................................................................................... 19 0 3 0.67 2 2 0 0 0 0 0 0 0 0
...................................................CTCTGAGATTTGTGAATGCC....................................................................................................................... 20 0 3 0.67 2 2 0 0 0 0 0 0 0 0
....................................................TCTGAGATTTGTGAATGCCCCAGA.................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCCAA................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................CTGAGATTTGTGAATGCCCC..................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................GATTTGTGAATGCCCCAGA.................................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TGGCGAAATTTTCACGCAAAAGGGT.......................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................CCAAATTTGTTTGCTCTGGATCT...... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GTTTTCTCTGGCTCTTATAGA 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TACCAAATTTGTTTGCTCTGGATC....... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................CTCTGAGATTTGTGAATGCCC...................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TACCAAATTTGTTTGCTCTGGCT........ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCACGCAAAAGGGTCAAGATC................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................TCGTCCTTTGCGTGGTCGAAAGG........................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................CTCTGAGATTTGTGAATGCCCC..................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCACGCAAAAGGGTCAAGATCCGATAT............................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TTCACGCAAAAGGGTCAAGA..................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TTTCACGCAAAAGGGCCAAGATC................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................CCAAATTTGTTTGCTCTGGCTCTT..... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TTTCACGCAAAAGGGTCAAGATCCGA................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TTTTCACGCAAAAGGGTCAAGATCCGAT............................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCACGCAAAAGGGTCAAGATCCGAA............................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................CCAAATTTGTTTGCTCTGGCTC....... 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................TCACGCAAAAGGGTCAAGA..................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TACCAAATTTGTTTGCTCTGG.......... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................TCACGCAAAAGGGTCAAGATCCGAT............................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TTCACGCAAAAGGGTCAAGATC................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................TTCGTCCTTTGCGTGGTCGAAAGGA....................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................CTGAGATTTGTGAATGCCCCA.................................................................................................................... 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0
..................................................CCTCTGAGATTTGTGAATGCCCC..................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...TCTAACAGAAGTGCGGATACC...................................................................................................................................................................... 21 0 20 0.35 7 5 0 2 0 0 0 0 0 0
.................................TACTCTAGCCTTAACAGTCTC........................................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...............................GTTACTCTAGCCTTAACAGTCTCTG...................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
..................................................TCCCTGAGATTTGTGAATGCCC...................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................TTTGGTTACTCTAGCCTTAACA............................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...................................................CTCTGAGATTTGTGAATG......................................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGAATGCCCA..................................................................................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....TAACAGAAGTGCGGATACCAAATT................................................................................................................................................................. 24 0 20 0.30 6 6 0 0 0 0 0 0 0 0
.....TAACAGAAGTGCGGATACCAA.................................................................................................................................................................... 21 0 20 0.30 6 3 0 0 0 0 0 3 0 0
....................TACCAAATTTGGTTACTCTAGCCTTA................................................................................................................................................ 26 0 20 0.25 5 5 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTAAATGCCC...................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................TAGCCTTAACAGTCTCTGAGATT................................................................................................................................. 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0
......................CCAAATTTGGTTACTCTAGC.................................................................................................................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0
....................................................TCTGAGATTTGTGAATGTCCC..................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0
.........AGAAGTGCGGATACCAAATT................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................GATATAGCACTGTTGTGGA............................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................TCTCTGAGATTTGTGATTG......................................................................................................................... 19 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................TCTCTGAGATTTGTGATTGA........................................................................................................................ 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.GATCTAACAGAAGTGCGGATACCAAA................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..ATCTAACAGAAGTGCGGATA........................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................ACCAAATTTGGTTACTCTA...................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...TCTAACAGAAGTGCGGATAC....................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0
......AACAGAAGTGCGGATACCAAA................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0
AGATCTAACAGAAGTGCGGATA........................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..............TGCGGATAGCAAATTTGGTTACTC........................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
........................AAATTTGGTTACTCTAGCCTTA................................................................................................................................................ 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..............TGCGGATACCAAATTTGGTTA........................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................................................................................AGTGTGGTCGCAAGGCTG..................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................CTGAGGGTAGTGAATGCCC...................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
....................TACCAAATTTGGTTACTCTAGCCTTAA............................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGATTGCCCCA.................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................CAAATTTGGTTACTCTAGCCT.................................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0
AGATCTAACAGAAGTGCGGATACCA..................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TCTCTGAGATTTGTGATTGCC....................................................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TCTAGATTGTCTTCACGCCTATGGTTTAAACCAATGAGATCGGAATTGTCAGAGACTCTAAACACTTACGGGGTCTTAAAGCAGGAAACGCACCAGCTTTCCGACGCACCGCTTTAAAAGTGCGTTTTCCCAGTTCTAGGCTATAGCGTCATAACACCTATGGTTTAAACAAACGAGACCGAGAATATCT
************************************************************************.....................((((((.....((((.(((..(((((.((.......)).)))))..)))...))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 GSM343916
embryo
 V112
male body		 GSM444067
head
 M062
head
...................................GAGATCGGAATTGTCAGAGACTCTA.................................................................................................................................. 25 0 3 21.67 65 34 29 2 0 0 0 0 0
....................................AGATCGGAATTGTCAGAGACTCTA.................................................................................................................................. 24 0 3 21.00 63 39 19 5 0 0 0 0 0
.....................................GATCGGAATTGTCAGAGACTCTA.................................................................................................................................. 23 0 3 9.00 27 13 11 2 0 1 0 0 0
...........................................................................................................................GTTTTCCCAGTTCTAGGCTATAGCGT......................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0
........................................CGGAATTGTCAGAGACTCTA.................................................................................................................................. 20 0 7 2.14 15 4 7 4 0 0 0 0 0
......................................................................ATGTCTTAAAGCAGGAAACGCACCA............................................................................................... 25 2 1 2.00 2 0 2 0 0 0 0 0 0
.......................................TCGGAATTGTCAGAGACTCTA.................................................................................................................................. 21 0 7 1.43 10 8 1 1 0 0 0 0 0
............................................................................................................................TTTTCCCAGTTCTAGGCTATAGCGT......................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................TTTCCGACGCACCGCTTTAAAAGTGC................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................TCTAGGCTATAGCGTCATAACACCT............................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................ATAGCGTCATAACACCTATGGTTT........................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................CGTTTTCCCAGTTCTAGGCTATAGCGT......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................GAGATCGGAATTGTCAGAGACTCT................................................................................................................................... 24 0 3 1.00 3 3 0 0 0 0 0 0 0
.............................................................................................................................TTTCCCAGTTCTAGGCTATAGCGTCAT...................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................GGTCTTAAAGCAGGAAACGCACC................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................TTCCCAGTTCTAGGCTATAGCGTCAT...................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................GTTTAAACAAACGAGACCGAGAAT.... 24 0 2 1.00 2 0 0 0 0 1 1 0 0
................................................................................................................................CCCAGTTCTAGGCTATAGCGTCAT...................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................GATCGGAATTGTCAGAGACTCT................................................................................................................................... 22 0 3 0.67 2 2 0 0 0 0 0 0 0
....................................AGATCGGAATTGTCAGAGACTCT................................................................................................................................... 23 0 3 0.67 2 2 0 0 0 0 0 0 0
......................................ATCGGAATTGTCAGAGACTCTA.................................................................................................................................. 22 0 5 0.60 3 0 0 3 0 0 0 0 0
..................................................................TACGGGGTCTTAAAGCAGGA........................................................................................................ 20 0 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................................................................GTGCGTTTTCCCAGTTCTAG................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................GGTTTAAACAAACGAGACCGAGAATATC. 28 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................GTGCGTTTTCCCAGTTCTAGGCTAT.............................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................CAATGAGATCGGAATTGTCAGAGACT..................................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0 0
.........................TTAAACCAATGAGATCGGAATTGTCAG.......................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0
..........................TAAACCAATGAGATCGGAATTG.............................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0 0 0
.....................................GATCGGAATTGTCAGAGACTC.................................................................................................................................... 21 0 3 0.33 1 0 0 0 0 0 0 1 0
.........................................GGAATTGTCAGAGACTCTA.................................................................................................................................. 19 0 7 0.29 2 0 0 2 0 0 0 0 0
.....................................GATCGGAATTGTCAGAGACCCT................................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
...................................AAGATCGGAATTGTCAGAGACTCTA.................................................................................................................................. 25 1 9 0.22 2 0 0 2 0 0 0 0 0
.......................................TCGGAATTGTCAGAGGCTCTA.................................................................................................................................. 21 1 9 0.22 2 0 0 2 0 0 0 0 0
......................................ATCGGAATTGTCAGAGACTC.................................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0 0 0
...................................GAGATCGGAATTGTCAGAGACTCGA.................................................................................................................................. 25 1 5 0.20 1 0 0 0 1 0 0 0 0
........GTCTTCACGCCTATGGTTTAAACCAAT........................................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0 0 0
..................................AGAGATCGGAATTGTCAGAGACTCTA.................................................................................................................................. 26 1 6 0.17 1 1 0 0 0 0 0 0 0
....................ATGGTTTAAACCAATGAGATCGGAA................................................................................................................................................. 25 0 20 0.15 3 3 0 0 0 0 0 0 0
........................................TGGAATTGTCAGAGACTCTA.................................................................................................................................. 20 1 7 0.14 1 1 0 0 0 0 0 0 0
........................................CGGAATTGTCAGAGACTCTAA................................................................................................................................. 21 0 7 0.14 1 0 0 0 0 0 0 1 0
.......................................TCGGAATTGTCAGAGACTCT................................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0 0 0
........................................CGGAATTGTCAGAGACTCTAAACA.............................................................................................................................. 24 0 7 0.14 1 0 0 1 0 0 0 0 0
........................................CGGAATTGTCAGAGACTCT................................................................................................................................... 19 0 7 0.14 1 0 0 1 0 0 0 0 0
.........................................GGAATTGTCAGAGACTCTAAACA.............................................................................................................................. 23 0 7 0.14 1 0 0 1 0 0 0 0 0
...................................GAGGTCGGAATTGTCAGAGACTCTA.................................................................................................................................. 25 1 8 0.13 1 1 0 0 0 0 0 0 0
.....................................GGTCGGAATTGTCAGAGACTC.................................................................................................................................... 21 1 8 0.13 1 1 0 0 0 0 0 0 0
....................................AGGTCGGAATTGTCAGAGACTCTA.................................................................................................................................. 24 1 8 0.13 1 1 0 0 0 0 0 0 0
...............................AAATGAGATCGGAATTGTCAGAGACT..................................................................................................................................... 26 1 8 0.13 1 0 1 0 0 0 0 0 0
...................................GAGGTCGGAATTGTCAGAGA....................................................................................................................................... 20 1 8 0.13 1 1 0 0 0 0 0 0 0
....................................................................................GAAACGCAACAGATTTCAGACG.................................................................................... 22 3 9 0.11 1 1 0 0 0 0 0 0 0
..................CTATGGTTTAAACCAATGAGAT...................................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0
........................................CGGGATTGTCAGAGACTCTA.................................................................................................................................. 20 1 11 0.09 1 1 0 0 0 0 0 0 0
........................................CGGAATTGTCAGAGACTCTAG................................................................................................................................. 21 1 14 0.07 1 1 0 0 0 0 0 0 0
...............................................GTCAGAGACTCTAGACACTTG.......................................................................................................................... 21 2 16 0.06 1 1 0 0 0 0 0 0 0
...............CGCCTATGGTTTAAACCAATG.......................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1
........GTCTTCACGCCTATGGTTTAAAC............................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
....................................AGATCGAAATTGTCAGAGACTCT................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................TGGTTTAAACCAATGAGAT...................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
..TAGGTTGTCTTCACGCCTATG....................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
.......TGTCTTCACGCCTATGGTTTAAACC.............................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0 0 0
........GTCTTCACGCCTATGGTTT................................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0
......................GGTTTAAACCAATGAGATCGG................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
..........CTTCACGCCTATGGTTTAAACCA............................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
..TGGATTGTCTTCACGCCTATGGT..................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
....................................AGATCGAAATTGTCAGAGACTCTA.................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0
...AGGTTGTCTTCACGCCTATGGT..................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
.......TGTCTTCACGCCTATGGTTT................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_66:26847-27036 + dps_191 AGATCTAACAGAAGTGCGGATACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------TTAACAGTCTCTGAGATTTGTGAATGCCCCAGAATTTCGTCCTTTGCGTGGTCGAAAGGCTGCGTGGCGAAATTTTCACGCAAAAGGGTCAAGATCCGATATCGCAGTATTGTGGATACCAAATTTGTTTGCTCTGGCTCTTATAGA--------------
droPer2 scaffold_113:31529-31717 + AGATCTAACAGAGGTGC-GGTACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------TTAACAGTCTCTGAGATTTGTGAATGCCCCAGATTTTCGTCCTTTGCATGGTCGAAAGGCTGCGTGGCGAAATTTTCACGCAAAAGGGTCAAGATCCGATATCGCAGTATTGTGGATACCAAATTTGTTTGCTCTGGCTCTTATAGC--------------
droWil2 scf2_1100000001380:5115-5290 - ACTAA---GC-GAATATACATACCAAATTTGGTGTCTCTA----------------------------------GCT------------------------------GGAATAGTTTTTGAGATA----AAC------GCTTTTTTTTAATTGCGGGGGCGGAAAGGGGCGTGGCAAAAATTTGAAATAAACTTGATCACAATACATACTACACGAGTCTACATACCAAATTTGGTTGCTATTGCTCTTACAGT--------------
droVir3 scaffold_13324:934364-934541 + ATG-------------------CCAAATTTGGTGACTCTAGCTTTTACTATTTACCAAAATTGTCCAAAAAACA---GAATATCGACATCGATTTTTATCGATAGCT----------------------------------------------TGGAAACGAAATAAGC--TATCGATTATCGGAAACAATTTCGATCTGCGCAGGCACTAGGAGTACCTACATCTAAAAT-----TTCTCTAGCT-TTATAGG--------------
droMoj3 scaffold_3050:1649-1843 + AAATGTATAT-AAGTATACATAAAAAATTTGGAGACTCTAGCTTAAT-GATGTAGGAGGTATAAATTTATTACT---GGTTTTCGATAATGTTTTTAATCGATAACA-----------------------------AAATAAGGGGCAAT------------------T--TATCGATATTGAAAGGAAAACTCGATATGCGCGTGATGCCG-----TGTGAAAAAAAAATTTCAAGTCTCTAGCTCTTATATC--------------
droGri2 scaffold_15203:4046918-4046976 + AACTG------GTATACGAGAACCAACTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTCTCTAGCTTTTACAGTCTCTGAGATATGCG
droAna3 scaffold_4447:2598-2713 + GAAAT------------------------------------------------------------------------------------------------------------------------------------------ATGACACTTTTGGGGGCGGTAGGGGGCGTGGCACAAATTTGAAACAAACGGGGCCTGCTTGTTTTTTGCAGGAGTCATCGTGCCAAAATTTAGAGTAGTGTCTCTTATAGT--------------
droBip1 scf7180000394057:4465-4588 + ACG----------------------------------------------------------------------------------------------------------------------------------CTACAGAAACTCGCAGTTTGTATAGACGAAAGGGGATGTGGCAAAATTTTGGAACAAAATTGAACTGCGTTGGCATTGAAGAAGTATCCATGCCAAATCATTTAGCTTTATCTCTTATAGT--------------
droKik1 scf7180000301710:244965-245004 + CA-----------------------AATTTGGCATGTCTA----------------------------------GCT------------------------------CTTATAGTCTCTGAGATTTG---------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490948:3964-4024 - TTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGGTTCAAGGTCCGA--TATCGAAAATTATCGTGGTATAGCCAAACTTTCT----------GC--------------
droRho1 scf7180000773517:4473-4574 - GT--------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTTAAAGGGGGCGTGGCACCATTTTGAAACAAACTTGCGCTGCGTAGGAACTCCTAGAATCTGCATGCAAAATGCCAATCTTCTGGCTTTTATAGT--------------
droBia1 scf7180000302432:169499-169634 - TGAAA----------------------------------------------------------------------------------------------------------------------ACTGTAAGCGCTACAGATTTTCGCGGATTGTGGGCGTTAAAGTGGGTATGGCACCTTGCTGAAACAAACTTGCGCTGGGCAGGAACCCAAGGAATCTGCATGCCAAGTCTGACAGTTCTGGCTTTTATAGT--------------
droTak1 scf7180000414397:10384-10476 - AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGGGCGTGGCACCATTTTAAAACAAACATGCGCTGCGTAGGAACTCCTAAAATCTGCATGCAAAATGCCAATCTTCTAGCTTTTATAGT--------------
droEug1 scf7180000409882:6632-6818 - ACATCTAA-A-GATTATACATACTGACTTTCAATTTTCTA----------------------------------GCT------------------------------CTAATAGTTCCTGAGATTTC-AGTGATTTTAGTTTTTCGCGATTTGTGGGCGTTAGAGTGGGCGTGGCAGAATACTGTAATAAATTTGCGCTGCGTTGGGACCTCAAGAATCTTCATGGCTAATCTCATTTTTGTATCTCTTATAGT--------------
dm3 chr4:164174-164222 - ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGAATCTCCATCTTCTGTCTTTTATAGA--------------
droSim2 2r:1850528-1850586 + TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAATTTAAACCTTCTAGCTTGTATAGTCCCTGAGATTT---
droSec2 scaffold_6:141307-141359 - TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATATCTCTAGAATGTGTATGCTTAATCTCAACTTTCTAGCTTTTATAGT--------------
droYak3 v2_chrUn_006:8133-8315 - GAAATTTACAGG--ACC-AATACAAAAATGAAA--------------------------------------------AAATAT------------------------TAAAACATTTTTCAAAAGTGTGAGCGTGGCAGTTTTGGGCGGTTTGTGGGCGTTAGAGTGGGCGTGGCAACATGAATCGACAAACTTGCGCTGCTTCTATATCTTGGGAGTCTGTATGCTTAATCTCATTTTTCTAGCTTTTGTAGT--------------
droEre2 scaffold_4929:20732409-20732494 - G------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGCAACATTTGGAAACAAACTTGTGGTGCGTCTATGTCTCTGGAAGGTGTATGCCTAATCTGTACTTTCCACCTTCTATAGT--------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGATCTAACAGAAGTGCGGATACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------TTAACAGTCTCTGAGATTTGTGAATGCCCCAGAATTTCGTCCTTTGCGTGGTCGAAAGGCTGCGTGGCGAAATTTTCACGCAAAAGGGTCAAGATCCGATATCGCAGTATTGTGGATACCAAATTTGTTTGCTCTGGCTCTTATAGA--------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................TCTCTGAGATTTGTGAATGCCCC...................................................................................................................................23233.006605540000700
..................................................................................................................TCTCTGAGATTTGTGAATGCCC....................................................................................................................................22218.003603210000300
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAGAAT..............................................................................................................................28116.001601400000200
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAGAA...............................................................................................................................27115.001501320000000
....................TACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------T................................................................................................................................................................242012.40248024800000000
..................................................................................................................TCTCTGAGATTTGTGAATGCC.....................................................................................................................................21312.333702820300400
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAG.................................................................................................................................2529.001801800000000
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCA..................................................................................................................................2429.001801610000100
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAGA................................................................................................................................2628.501701700000000
..............................................................................................................................................TTCGTCCTTTGCGTGGTCGAAAGGC.....................................................................................................2518.0080800000000
...............................................................................................................................................TCGTCCTTTGCGTGGTCGAAAGGC.....................................................................................................2414.0040400000000
..................................................................................................................................................TCCTTTGCGTGGTCGAAAGGCTGC..................................................................................................2414.0040400000000
..............................................................................................................................................TTCGTCCTTTGCGTGGTCGAAAGG......................................................................................................2424.0080800000000
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAGAAA..............................................................................................................................2813.0030300000000
..................................................................................................................TCTCTGAGATTTGTGAATGC......................................................................................................................................2032.3370400000300
...........................................................................................................................................................................................................................TGGATACCAAATTTGTTTGCTCTGGC.......................2612.0020100000100
......................................................................................................................TGAGATTTGTGAATGCCCCAGAATT.............................................................................................................................2512.0020200000000
...............................................................................................................CAGTCTCTGAGATTTGTGAATGCCC....................................................................................................................................2512.0020200000000
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAGAATT.............................................................................................................................2912.0020200000000
......................................................................................................................................................................................TCACGCAAAAGGGTCAAGATCCGATA............................................................2622.0040310000000
..............................................................................................................................................TTCGTCCTTTGCGTGGTCGAAAG.......................................................................................................2321.5030300000000
...................................................................................................................CTCTGAGATTTGTGAATGCCCCA..................................................................................................................................2321.5030300000000
..............................................................................................................ACAGTCTCTGAGATTTGTGAATGCCCC...................................................................................................................................2711.0010010000000
...............................................................................................................................................................................................................................TACCAAATTTGTTTGCTCTGGCTC.....................2421.0020200000000
.....................................................................................................................................................................................TTCACGCAAAAGGGTCAAGATCCGATA............................................................2721.0020110000000
...............................................................................................................................................................................................................................TACCAAATTTGTTTGCTCTGGCTCT....................2521.0020110000000
..............................................................................................................................................................TCGAAAGGCTGCGTGGCGAAATTT......................................................................................2411.0010100000000
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAGAATA.............................................................................................................................2911.0010100000000
............................................................................................................................................................................................................GATATCGCAGTATTGTGGATACC.........................................2311.0010100000000
.........................................................................................................................................................................................................TCCGATATCGCAGTATTGTGGATACC.........................................2611.0010100000000
................................................................................................................................................................................................................TCGCAGTATTGTGGATACCAAAT.....................................2311.0010100000000
....................................................................................................................TCTGAGATTTGTGAATGCCCCAG.................................................................................................................................2321.0020200000000
..............................................................................................................................................................................................................TATCGCAGTATTGTGGATAC..........................................2011.0010010000000
...................................................................................................................CTCTGAGATTTGTGAATGCCCCAGAA...............................................................................................................................2611.0010100000000
...........................................................................................................................................AATTTCGTCCTTTGCGTGGTC............................................................................................................2111.0010100000000
................................................................................................................................................CGTCCTTTGCGTGGTCGAAAGGC.....................................................................................................2311.0010100000000
......................................................................................................................TGAGATTTGTGAATGCCCCAGAAT..............................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................TACCAAATTTGTTTGCTCTGGCTCTTA..................2721.0020000000200
..............................................................................................................................................................TCGAAAGGCTGCGTGGCGAAA.........................................................................................2111.0010100000000
.................................................................................................................GTCTCTGAGATTTGTGAATGCCC....................................................................................................................................2321.0020100000100
.............................................................................................................................................TTTCGTCCTTTGCGTGGTCGAAAGGC.....................................................................................................2611.0010100000000
.......................................................................................................................................................TGCGTGGTCGAAAGGCTG...................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................ATACCAAATTTGTTTGCTCTG.........................2111.0010000000001
.................................................................................................................................................................AAAGGCTGCGTGGCGAAATTT......................................................................................2111.0010100000000
.................................................................................................................................................................AAAGGCTGCGTGGCGAAATT.......................................................................................2011.0010100000000
.....................ACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------TTAACAG..........................................................................................................................................................2921.0020200000000
.....................................................................................................................................................TTTGCGTGGTCGAAAGGCTA...................................................................................................2011.0010100000000
.......................................................................................................................................................TGCGTGGTCGAAAGGCTGCGTGGC.............................................................................................2411.0010100000000
..............................................................................................................................................................TCGAAAGGCTGCGTGGCGAAATT.......................................................................................2311.0010100000000
...........................................................................................................................................................................................................CGATATCGCAGTATTGTGGATACCA........................................2511.0010100000000
.............................................................................................................................................................................................................................GATACCAAATTTGTTTGCTCTGGC.......................2411.0010100000000
...................................................................................................................CTCTGAGATTTGTGAATGCCCCAG.................................................................................................................................2421.0020200000000
...........................................................................................................................................................TGGTCGAAAGGCTGCGTGGCGAAATT.......................................................................................2611.0010100000000
..................................................................................................................................................TCCTTTGCGTGGTCGAAAGGCTG...................................................................................................2311.0010100000000
............................................................................................................................................................GGTCGAAAGGCTGCGTGGCGAAATTT......................................................................................2611.0010100000000
AGATCTAACAGAAGTGCGGAT.......................................................................................................................................................................................................................................................21200.95191900009000
...................................................................................................................CTCTGAGATTTGTGAATGC......................................................................................................................................1930.6720200000000
............................TTGGTTACTCTA----------------------------------GCC------------------------------TTAACAG..........................................................................................................................................................2230.6720200000000
..................................................................................................................TCTCTGAGATTTGTGAATG.......................................................................................................................................1930.6720200000000
...................................................................................................................CTCTGAGATTTGTGAATGCC.....................................................................................................................................2030.6720200000000
....................................................................................................................TCTGAGATTTGTGAATGCCCCAGA................................................................................................................................2420.5010100000000
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAA.................................................................................................................................2520.5010100000000
.....................................................................................................................CTGAGATTTGTGAATGCCCC...................................................................................................................................2020.5010100000000
.........................................................................................................................GATTTGTGAATGCCCCAGA................................................................................................................................1920.5010100000000
...........................................................................................................................................................................TGGCGAAATTTTCACGCAAAAGGGT........................................................................2520.5010100000000
...................................................................................................................CTCTGAGATTTGTGAATGCCC....................................................................................................................................2120.5010100000000
...............................................................................................................................................................................................................................TACCAAATTTGTTTGCTCTGGCT......................2320.5010100000000
......................................................................................................................................................................................TCACGCAAAAGGGTCAAGATC.................................................................2120.5010010000000
...............................................................................................................................................TCGTCCTTTGCGTGGTCGAAAGG......................................................................................................2320.5010100000000
...................................................................................................................CTCTGAGATTTGTGAATGCCCC...................................................................................................................................2220.5010100000000
......................................................................................................................................................................................TCACGCAAAAGGGTCAAGATCCGATAT...........................................................2720.5010100000000
.....................................................................................................................................................................................TTCACGCAAAAGGGTCAAGA...................................................................2020.5010100000000
.................................................................................................................................................................................................................................CCAAATTTGTTTGCTCTGGCTCTT...................2420.5010100000000
....................................................................................................................................................................................TTTCACGCAAAAGGGTCAAGATCCGA..............................................................2620.5010100000000
...................................................................................................................................................................................TTTTCACGCAAAAGGGTCAAGATCCGAT.............................................................2820.5010100000000
......................................................................................................................................................................................TCACGCAAAAGGGTCAAGATCCGAA.............................................................2520.5010100000000
.................................................................................................................................................................................................................................CCAAATTTGTTTGCTCTGGCTC.....................2220.5010000000100
......................................................................................................................................................................................TCACGCAAAAGGGTCAAGA...................................................................1920.5010100000000
...............................................................................................................................................................................................................................TACCAAATTTGTTTGCTCTGG........................2120.5010000000100
......................................................................................................................................................................................TCACGCAAAAGGGTCAAGATCCGAT.............................................................2520.5010100000000
.....................................................................................................................................................................................TTCACGCAAAAGGGTCAAGATC.................................................................2220.5010100000000
..............................................................................................................................................TTCGTCCTTTGCGTGGTCGAAAGGA.....................................................................................................2520.5010100000000
.....................................................................................................................CTGAGATTTGTGAATGCCCCA..................................................................................................................................2120.5010000001000
...TCTAACAGAAGTGCGGATACC....................................................................................................................................................................................................................................................21200.3570520000000
.................................TACTCTA----------------------------------GCC------------------------------TTAACAGTCTC......................................................................................................................................................2130.3310100000000
...............................GTTACTCTA----------------------------------GCC------------------------------TTAACAGTCTCTG....................................................................................................................................................2530.3310000000100
...........................TTTGGTTACTCTA----------------------------------GCC------------------------------TTAACA...........................................................................................................................................................2230.3310100000000
...................................................................................................................CTCTGAGATTTGTGAATG.......................................................................................................................................1830.3310100000000
..................................................................................................................TCTCTGAGATTTGTGAATGCCCA...................................................................................................................................2330.3310100000000
.....TAACAGAAGTGCGGATACCAAATT...............................................................................................................................................................................................................................................24200.3060600000000
.....TAACAGAAGTGCGGATACCAA..................................................................................................................................................................................................................................................21200.3060300000030
....................TACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------TTA..............................................................................................................................................................26200.2550500000000
......................................TA----------------------------------GCC------------------------------TTAACAGTCTCTGAGATT...............................................................................................................................................2350.2010100000000
......................CCAAATTTGGTTACTCTA----------------------------------GC................................................................................................................................................................................................20200.1020200000000
.........AGAAGTGCGGATACCAAATT...............................................................................................................................................................................................................................................20200.0510000001000
.GATCTAACAGAAGTGCGGATACCAAA.................................................................................................................................................................................................................................................26200.0510100000000
..ATCTAACAGAAGTGCGGATA......................................................................................................................................................................................................................................................20200.0510100000000
.....................ACCAAATTTGGTTACTCTA----------------------------------..................................................................................................................................................................................................19200.0510100000000
...TCTAACAGAAGTGCGGATAC.....................................................................................................................................................................................................................................................20200.0510010000000
......AACAGAAGTGCGGATACCAAA.................................................................................................................................................................................................................................................21200.0510000000010
AGATCTAACAGAAGTGCGGATA......................................................................................................................................................................................................................................................22200.0510100000000
........................AAATTTGGTTACTCTA----------------------------------GCC------------------------------TTA..............................................................................................................................................................22200.0510010000000
..............TGCGGATACCAAATTTGGTTA.........................................................................................................................................................................................................................................21200.0510000010000
....................TACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------TTAA.............................................................................................................................................................27200.0510000000100
.......................CAAATTTGGTTACTCTA----------------------------------GCC------------------------------T................................................................................................................................................................21200.0510010000000
AGATCTAACAGAAGTGCGGATACCA...................................................................................................................................................................................................................................................25200.0510100000000
droPer2
AGATCTAACAGAGGTGC-GGTACCAAATTTGGTTACTCTA----------------------------------GCC------------------------------TTAACAGTCTCTGAGATTTGTGAATGCCCCAGATTTTCGTCCTTTGCATGGTCGAAAGGCTGCGTGGCGAAATTTTCACGCAAAAGGGTCAAGATCCGATATCGCAGTATTGTGGATACCAAATTTGTTTGCTCTGGCTCTTATAGC--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................CAAATTTGTTTGCTCTGG........................1840.251100000
..................................................................................................................................................................................................................................CAAATTTGTTTGCTCTGGC.......................1940.251100000
..................................................................................................................TCTCTGAGATTTGTGAATGCCCCAGAT...............................................................................................................................2770.141100000
......................................TA----------------------------------GCC------------------------------TTAACAGTCTCTGAGATT...............................................................................................................................................2390.111010000
.......................................A----------------------------------GCC------------------------------TTAACAGTCTCTGAGATTT..............................................................................................................................................23100.101010000
.......................................A----------------------------------GCC------------------------------TTAACAGTCTCTGAGATT...............................................................................................................................................22100.101010000
droWil2
ACTAA---GC-GAATATACATACCAAATTTGGTGTCTCTA----------------------------------GCT------------------------------GGAATAGTTTTTGAGATA----AAC------GCTTTTTTTTAATTGCGGGGGCGGAAAGGGGCGTGGCAAAAATTTGAAATAAACTTGATCACAATACATACTACACGAGTCTACATACCAAATTTGGTTGCTATTGCTCTTACAGT--------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................GGGGGCGGAAAGGGGCGTGGC.............................................................................................21200.20400040
............................................................................................................................................................GGGCGGAAAGGGGCGTGGCA............................................................................................20200.10202000
.........................................................................................................................................................CGGGGGCGGAAAGGGGCGTGGCA............................................................................................23200.10202000
.....................................................................................................................TTGAGATA----AAC------GCTTTTTTTTAATTGC..................................................................................................................27130.08101000
...............................................................................................................................................TTTTTAATTGCGGGGGCGGAAAGGGG...................................................................................................26140.07101000
.....................................................................................................................TTGAGATA----AAC------GCTTTTTTTTAAT.....................................................................................................................24190.05100010
.............................................................................................................................................TTTTTTTAATTGCGGGGGCGGAAA.......................................................................................................24200.05100010
..............TATACATACCAAATTTGGT...........................................................................................................................................................................................................................................19200.05100010
droVir3
ATG-------------------CCAAATTTGGTGACTCTAGCTTTTACTATTTACCAAAATTGTCCAAAAAACA---GAATATCGACATCGATTTTTATCGATAGCT----------------------------------------------TGGAAACGAAATAAGC--TATCGATTATCGGAAACAATTTCGATCTGCGCAGGCACTAGGAGTACCTACATCTAAAAT-----TTCTCTAGCT-TTATAGG--------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................TATCGGAAACAATTTCGATCTGCGCA................................................................2644.0016000000000000000000002000000041210200000400000000000000000000000
.................................................................................................................................................................................TTATCGGAAACAATTTCGATCTGCGC.................................................................2641.757000001000000000000000000000030110100000000000000000000000000000
..................................................................................................................................................................................TATCGGAAACAATTTCGATCTGCGC.................................................................2541.506000000000000000000001000000040000100000000000000000000000000000
..................................................................................................................................................................................TATCGGAAACAATTTCGATCTGCGCAG...............................................................2741.255000000000000000000000000000040100000000000000000000000000000000
...............................................................................................................................................................................GATTATCGGAAACAATTTCGATCTGC...................................................................2641.255000000000000000000000000000030020000000000000000000000000000000
.......................................................................................................AGCT----------------------------------------------TGGAAACGAAATAAGC--TATCGA...........................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................TCGATTATCGGAAACAATTTCGATCTGC...................................................................2841.004000000000000000000000000000011020000000000000000000000000000000
...............................................................................................TTATCGATAGCT----------------------------------------------TGGAAACGAAATAAGC--.................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................GATTATCGGAAACAATTTCGATC......................................................................2340.753000002000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................TCGGAAACAATTTCGATCTGCGCAGGC.............................................................2730.672000000000000000000000000000010010000000000000000000000000000000
....................................................................................................................................................................................TCGGAAACAATTTCGATCTGCGCAGG..............................................................2630.672000000000000000000000000000020000000000000000000000000000000000
.............................................................................................................................................................................TCGATTATCGGAAACAATTTCGATC......................................................................2540.502000000000000000000000000000001000000000100000000000000000000000
...............................................................................................................................................................................GATTATCGGAAACAATTTCGATCTGCGC.................................................................2840.502000000000000000000000000000010010000000000000000000000000000000
................................................................................................................................................................................ATTATCGGAAACAATTTCGATCTGCGC.................................................................2740.502000000000000000000000000000000000100000100000000000000000000000
...............................................................TCCAAAAAACA---GAATATCGACATCGA................................................................................................................................................................................2620.501000000000000000000000000000000000000100000000000000000000000000
..........................ATTTGGTGACTCTAGCTTTTACTAT.........................................................................................................................................................................................................................2520.501000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................TTATCGGAAACAATTTCGATCTGCGCA................................................................2740.502000000000000000000000000000020000000000000000000000000000000000
..............................................................................................................................................................................................TTTCGATCTGCGCAGGCACTAG........................................................2220.501000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................TCGGAAACAATTTCGATCTGCGCAG...............................................................2540.502000000000000000000000000000010100000000000000000000000000000000
..................................................TTTACCAAAATTGTCCAAAAAACA---GA.............................................................................................................................................................................................2620.501000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................TCTAAAAT-----TTCTCTAGCT-TTATA................2320.501001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TATCGGAAACAATTTCGATCTGCGCAGG..............................................................2830.331000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................TCGGAAACAATTTCGATCTGCGCAGGCA............................................................2830.331000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................CGGAAACAATTTCGATCTGCGCAGGC.............................................................2630.331000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................TATCGATTATCGGAAACAATTTCGAT.......................................................................2630.331000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................TTATCGGAAACAATTTCGATCTGCG..................................................................2540.251000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................TATCGGAAACAATTTCGATCTGCGCC................................................................2640.251000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................ATCGATTATCGGAAACAATTTCGATC......................................................................2640.251000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................TTATCGGAAACAATTTCGATCTGCGCAG...............................................................2840.251000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................TCGATTATCGGAAACAATTTCGAT.......................................................................2440.251000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTATCGGAAACAATTTCGATCTG....................................................................2340.251000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................TCGGAAACAATTTCGATCTGCG..................................................................2240.251000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................GATTATCGGAAACAATTTCGATCTG....................................................................2540.251000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................TCGATTATCGGAAACAATTTCGATCT.....................................................................2640.251000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................TAGGAGTACCTACATCTAAAAT-----TTCTC...........................2740.251000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................ATCGATTATCGGAAACAATTTCGATCTGC...................................................................2940.251000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................TATCGGAAACAATTTCGATCTGC...................................................................2340.251000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................GATTATCGGAAACAATTTCGATCTC....................................................................2540.251000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................GATTATCGGAAACAATTTCGATCTGCGT.................................................................2870.141000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................GGCACTAGGAGTACCTACATCTAAAAT-----T...............................28130.081000000000000000000000000000001000000000000000000000000000000000
..................................................TTTACCAAAATTGTCCAAAAAACA---...............................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
................................................TATTTACCAAAATTGTCCAA........................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AAGC--TATCGATTATCGGAAAC................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................AGC--TATCGATTATCGGAAACA...............................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..................................................TTTACCAAAATTGTCCAAAAAACA---G..............................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
droMoj3
AAATGTATAT-AAGTATACATAAAAAATTTGGAGACTCTAGCTTAAT-GATGTAGGAGGTATAAATTTATTACT---GGTTTTCGATAATGTTTTTAATCGATAACA-----------------------------AAATAAGGGGCAAT------------------T--TATCGATATTGAAAGGAAAACTCGATATGCGCGTGATGCCG-----TGTGAAAAAAAAATTTCAAGTCTCTAGCTCTTATATC--------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................TATTACT---GGTTTTCGATAATGTTTT.............................................................................................................................................................................25200.75151500000
...................................................................TATTACT---GGTTTTCGATAATGTT...............................................................................................................................................................................23200.306600000
...................................................................TATTACT---GGTTTTCGATAATGTTT..............................................................................................................................................................................24200.153300000
................TACATAAAAAATTTGGAGACTC......................................................................................................................................................................................................................................22200.051100000
.........T-AAGTATACATAAAAAATTTGGAGA.........................................................................................................................................................................................................................................25200.051100000
.................ACATAAAAAATTTGGAGACTCTAGCTT................................................................................................................................................................................................................................27200.051100000
..............................................................................................................................................................................................................................AAAAAAAATTTCAAGTCTCTAGC.......................23200.051000010
..............TATACATAAAAAATTTGGAGACT.......................................................................................................................................................................................................................................23200.051100000
....................................................................ATTACT---GGTTTTCGATAATG.................................................................................................................................................................................20200.051100000
....................................................................ATTACT---GGTTTTCGATAATGTTTTT............................................................................................................................................................................25200.051100000
....................TAAAAAATTTGGAGACTCTAG...................................................................................................................................................................................................................................21200.051000010
...................................................................TATTACT---GGTTTTCGATAATG.................................................................................................................................................................................21200.051100000
..................................................................................................................................................................................................................................AAAATTTCAAGTCTCTAGCT......................20200.051000010
droGri2
AACTG------GTATACGAGAACCAACTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTCTCTAGCTTTTACAGTCTCTGAGATATGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GAAAT------------------------------------------------------------------------------------------------------------------------------------------ATGACACTTTTGGGGGCGGTAGGGGGCGTGGCACAAATTTGAAACAAACGGGGCCTGCTTGTTTTTTGCAGGAGTCATCGTGCCAAAATTTAGAGTAGTGTCTCTTATAGT--------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACG----------------------------------------------------------------------------------------------------------------------------------CTACAGAAACTCGCAGTTTGTATAGACGAAAGGGGATGTGGCAAAATTTTGGAACAAAATTGAACTGCGTTGGCATTGAAGAAGTATCCATGCCAAATCATTTAGCTTTATCTCTTATAGT--------------SizeHit CountTotal NormTotal
No Reads
droKik1
CA-----------------------AATTTGGCATGTCTA----------------------------------GCT------------------------------CTTATAGTCTCTGAGATTTG---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGGTTCAAGGTCCGA--TATCGAAAATTATCGTGGTATAGCCAAACTTTCT----------GC--------------SizeHit CountTotal NormTotal
No Reads
droRho1
GT--------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTTAAAGGGGGCGTGGCACCATTTTGAAACAAACTTGCGCTGCGTAGGAACTCCTAGAATCTGCATGCAAAATGCCAATCTTCTGGCTTTTATAGT--------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGAAA----------------------------------------------------------------------------------------------------------------------ACTGTAAGCGCTACAGATTTTCGCGGATTGTGGGCGTTAAAGTGGGTATGGCACCTTGCTGAAACAAACTTGCGCTGGGCAGGAACCCAAGGAATCTGCATGCCAAGTCTGACAGTTCTGGCTTTTATAGT--------------SizeHit CountTotal NormTotal
No Reads
droTak1
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGGGCGTGGCACCATTTTAAAACAAACATGCGCTGCGTAGGAACTCCTAAAATCTGCATGCAAAATGCCAATCTTCTAGCTTTTATAGT--------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACATCTAA-A-GATTATACATACTGACTTTCAATTTTCTA----------------------------------GCT------------------------------CTAATAGTTCCTGAGATTTC-AGTGATTTTAGTTTTTCGCGATTTGTGGGCGTTAGAGTGGGCGTGGCAGAATACTGTAATAAATTTGCGCTGCGTTGGGACCTCAAGAATCTTCATGGCTAATCTCATTTTTGTATCTCTTATAGT--------------SizeHit CountTotal NormTotal
No Reads
dm3
ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGAATCTCCATCTTCTGTCTTTTATAGA--------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................TGTATGCTGAATCTCCATCTTCTGTC.......................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TGTATGCTGAATCTCCATCTTCTGT........................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000200000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ATCTCCATCTTCTGTCTTTTATAGA--------------2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TCTATAATCTGTATGCTGAATCTCCA................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGA.......................................2331.6750000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000
.............................................................................................................................................................................................................................TATGCTGAATCTCCATCTTCTGT........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TATAATCTGTATGCTGAATCTCCAT...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................CTGAATCTCCATCTTCTGTCTTTTA..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................GAATCTCCATCTTCTGTCTTTTATA................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ATAATCTGTATGCTGAATCTCCATCTCT...........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ATAATCTGTATGCTGAATCTCCATCTTCT..........................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CTCTATAATCTGTATGCTGAATCTCCATC..............................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TAATCTGTATGCTGAATCTCCATCTTC...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TATAATCTGTATGCTGAATCTCCATCT.............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CTGTATGCTGAATCTCCATCTTCT..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ATAATCTGTATGCTGAATCTCCT................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGAA......................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TCTCTATAATCTGTATGCTGAATCT...................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGA.......................................2430.6720000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGAATCTC..................................2730.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CTATAATCTGTATGCTGAATC....................................2150.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGAATC....................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGAA......................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TCTCTATAATCTGTATGCTGA.......................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TCTCTATAATCTGTATGCTGAATC....................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTATAATCTGTATGCTGAAA.....................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAATTTAAACCTTCTAGCTTGTATAGTCCCTGAGATTT---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAATT....................................26174.00740010005102110000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAATTT...................................2714.00400000030100000000
............................................................................................................................................................................................................................GTATGCTAAATTTAAACCTTCTAGCT......................2613.00300000000012000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAA......................................24122.33280000001001710000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAATTTA..................................2812.00200000010100000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAAT.....................................25121.081300000070600000000
............................................................................................................................................................................................................................GTATGCTAAATTTAAACCTTCTAGC.......................2511.00100000001000000000
............................................................................................................................................................................................................................GTATGCTAAATTTAAACCTTCTAGCTT.....................2711.00100000000001000000
....................................................................................................................................................................................................................TAGAATCTGTATGCTAAATTTAAACC..............................2611.00100000001000000000
............................................................................................................................................................................................................................................CCTTCTAGCTTGTATAGTCCCTGAGA......2611.00100000000100000000
..................................................................................................................................................................................................................TCTAGAATCTGTATGCTAAATT....................................2220.50100000010000000000
.G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAATT....................................2520.50100000000100000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATG...........................................19200.25500000000500000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAA.......................................23130.15200000010100000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGC..........................................20200.15300000030000000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTA........................................22130.08100000010000000000
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTAGAATCTGTATGCTAAATA....................................26160.06100000000100000000
droSec2
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATATCTCTAGAATGTGTATGCTTAATCTCAACTTTCTAGCTTTTATAGT--------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GAAATTTACAGG--ACC-AATACAAAAATGAAA--------------------------------------------AAATAT------------------------TAAAACATTTTTCAAAAGTGTGAGCGTGGCAGTTTTGGGCGGTTTGTGGGCGTTAGAGTGGGCGTGGCAACATGAATCGACAAACTTGCGCTGCTTCTATATCTTGGGAGTCTGTATGCTTAATCTCATTTTTCTAGCTTTTGTAGT--------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................TCAAAAGTGTGAGCGTGGCAGTTTT.............................................................................................................................25200.05101000000000
.....................................................................................................................TTCAAAAGTGTGAGCGTGGCAGTTT..............................................................................................................................25200.05101000000000
.......................................................................................................................CAAAAGTGTGAGCGTGGCAGTTTTGG...........................................................................................................................26200.05100100000000
................................................................................................................CATTTTTCAAAAGTGTGAGCGTG.....................................................................................................................................23200.05101000000000
..............................................................................................................................GTGAGCGTGGCAGTTTTGGGC.........................................................................................................................21200.05100000010000
......................................................................................................................TCAAAAGTGTGAGCGTGGCAGTT...............................................................................................................................23200.05101000000000
..............................................................................................................................................................GTTAGAGTGGGCGTGGCAACATG.......................................................................................23200.05100100000000
.................................................................................................................ATTTTTCAAAAGTGTGAGCGT......................................................................................................................................21200.05100000010000
....................................................................................................................................................................................GAATCGACAAACTTGCGCTGCTTCT...............................................................25200.05101000000000
droEre2
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGCAACATTTGGAAACAAACTTGTGGTGCGTCTATGTCTCTGGAAGGTGTATGCCTAATCTGTACTTTCCACCTTCTATAGT--------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 03:01 PM