ID:

dps_1908

 Coordinate:

Unknown_group_259:744-894 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.2 -19.2 -19.1

Flybase annnotation

exon [dpse_GLEANR_8842:2]; CDS [Dpse\GA28725-cds]; intron [Dpse\GA28725-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-8_DWil-I-intLTRGypsy-
mature
  1. Unknown_group_30:13732-13755 -
  2. dps_1908  Unknown_group_259:776-799 -
  3. Unknown_group_130:18503-18526 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGATCGAATAATATAAAGCATGTACTCAATGCAGTAAGGACACCAAGAGCTAACGGTCATGCAGAATGAACGAACCGGATTATTTTATCAATGCTTCTACCTTCAAATAAAAAAGGAAAAACGATGGGACGACAAATACGATCAATCCAGTGGAGCATCAACACCATGGTAAATAGCACTACTAAATGCTCTCCATTTCAGTTATTGTATGGCTACGAGCCACGTAATATCCTTAAAAACACCTTGACGAG
**************************************************...((.((((.....)))).))....((((((((.(((......(((((((((.........))))........)))))......))).))).)))))(((((((.((((......))))....((((........)))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 M059
embryo
.................................................................................................................................................TCCAGTGGAGCATCAACACCATGG.................................................................................. 24 0 3 6.00 18 18 0 0 0
.................................................................................................................................................TCCAGTGGAGCATCAACACCATG................................................................................... 23 0 3 2.33 7 7 0 0 0
......................................................................................................................................................TGGAGCATCAACACCATGGTAAATAG........................................................................... 26 0 2 1.50 3 3 0 0 0
...............................................................................................................................................AATCCAGTGGAGCATCAACACCATGG.................................................................................. 26 0 3 1.33 4 4 0 0 0
..................................................................................................................................................CCAGTGGAGCATCAACACCATGG.................................................................................. 23 0 3 1.33 4 4 0 0 0
.................................................................................................................................................TCCAGTGGAGCATCAACACCAAA................................................................................... 23 2 3 0.67 2 1 0 1 0
..................................................................................................................TGAAAAACGATGGGACGACA..................................................................................................................... 20 1 2 0.50 1 1 0 0 0
..................................................................................................................TGAAAAACGATGGGACGACAA.................................................................................................................... 21 1 2 0.50 1 1 0 0 0
.................................................................................................................................................TCCAGTGGAGCATCAACACCA..................................................................................... 21 0 3 0.33 1 1 0 0 0
.................................................................................................................................................TCCAGTGGAGCATCAACACCATGGTA................................................................................ 26 0 3 0.33 1 1 0 0 0
.............................................................................................................................................................................................................TGTATGGCTACGAGCCACG........................... 19 0 3 0.33 1 1 0 0 0
...........................................................................................................................................................................................................ATTGTATGGCTACGAGCCACG........................... 21 0 3 0.33 1 1 0 0 0
..............................................................................................................................................CAATCCAGTGGAGCATCAACACCATGG.................................................................................. 27 0 3 0.33 1 1 0 0 0
.................................................................................................................................................TCCAGTGGAGCATCAACACCATGGT................................................................................. 25 0 3 0.33 1 1 0 0 0
.................................................................................................................................................TCCAGTGGAGCATCAACGCC...................................................................................... 20 1 3 0.33 1 0 1 0 0
...........................................................................................................................................................................................................ATTGTATGGCTACGAGCCAC............................ 20 0 3 0.33 1 1 0 0 0
..............................................................................................................................................CAATCCAGTGGAGCATCAACACC...................................................................................... 23 0 3 0.33 1 1 0 0 0
..................................................................................................ACCTTCAGGTAAAAAGGGAAA.................................................................................................................................... 21 3 8 0.25 2 2 0 0 0
....................................................................................................................................................................CATAGTAGAAAGCACTACT.................................................................... 19 3 19 0.21 4 2 0 0 2
.................................................................................................................................................TCCAGTGGAGCATCAACAAAAA.................................................................................... 22 3 8 0.13 1 1 0 0 0
...................................................................................................................GAATAACGATGCGACGAC...................................................................................................................... 18 2 9 0.11 1 1 0 0 0

Anti-sense strand reads

TCTAGCTTATTATATTTCGTACATGAGTTACGTCATTCCTGTGGTTCTCGATTGCCAGTACGTCTTACTTGCTTGGCCTAATAAAATAGTTACGAAGATGGAAGTTTATTTTTTCCTTTTTGCTACCCTGCTGTTTATGCTAGTTAGGTCACCTCGTAGTTGTGGTACCATTTATCGTGATGATTTACGAGAGGTAAAGTCAATAACATACCGATGCTCGGTGCATTATAGGAATTTTTGTGGAACTGCTC
**************************************************...((.((((.....)))).))....((((((((.(((......(((((((((.........))))........)))))......))).))).)))))(((((((.((((......))))....((((........)))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
.........................................................................................................................................................TCGTAGTTGTGGTACCATTTATCAT......................................................................... 25 1 2 0.50 1 1 0
...........................................................................................................................................................GTAGTTGTGGTACCATTTATCAT......................................................................... 23 1 2 0.50 1 1 0
........................................GTGGTTCTCGGTTGCCAGTACGTCT.......................................................................................................................................................................................... 25 1 2 0.50 1 1 0
...........................................................................................................................................................................TTATCGTGATGATTTACAAGGGGTA....................................................... 25 2 2 0.50 1 1 0
................................................................................................................................................................TATGGTACCATTTATCGTGATGATTT................................................................. 26 1 2 0.50 1 1 0
....................................................................................................................................................TCACCTCGTAGTTGTGGTACCATT............................................................................... 24 0 3 0.33 1 1 0
.....................................................................................................................................................CACCTCGTAGTTGTGGTACCATT............................................................................... 23 0 3 0.33 1 1 0
................................................................................................................................................TAGGTCACCTCGTAGTTGTGGTA.................................................................................... 23 0 3 0.33 1 1 0
....................................................................................................................................................TCACCTCGTAGTTGTGGTA.................................................................................... 19 0 3 0.33 1 1 0
..................................................................................................................................................GGTCACCTCGTAGTTGTGGT..................................................................................... 20 0 3 0.33 1 1 0
..................................................................................................................................................GGTCACCTCGTAGTTGTGGTACCAT................................................................................ 25 0 3 0.33 1 1 0
....................................................................................................................................................TCACCTCGTAGTTGTGGTACCAT................................................................................ 23 0 3 0.33 1 1 0
......................................................................................................................................................ACCTCGTAGTTGTGGTACCAT................................................................................ 21 0 3 0.33 1 1 0
...................................................................................................................................................GTCACCTCGTAGTTGTGGTACCATT............................................................................... 25 0 3 0.33 1 1 0
.....................................................................................................................................................CACCTCGTAGTTGTGGTACCAT................................................................................ 22 0 3 0.33 1 1 0
...................................................................................................................................................GTCACCTCGTAGTTGTGGTACCAT................................................................................ 24 0 3 0.33 1 1 0
.......................................................................................................................................................CCTCGTAGTTGTGGTACCATT............................................................................... 21 0 3 0.33 1 1 0
...........................................GTTCTCGATTGCCAGTACG............................................................................................................................................................................................. 19 0 3 0.33 1 1 0
...................................................................................................................................................GTCTATTCGTAGTTGTGGTA.................................................................................... 20 3 19 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_259:694-944 - dps_1908 AGATC-GAATAATATAAAGCATGTAC-----------TCAATGCAGTAAGGACACCAAGAGCTAACGGTCATGCAGAATGAACGAACCGGATTATTTTATCAATGCT---------------------TCTACCTTCA---------AATAAAAA-----AGGAAAAACGATGGGACGACAA-ATACGATCAATCCAGTGGAGCATCAAC----A---CC------------ATGGTAAATAGCACTACTAAATGCTCTCCATTTCAGTTATTGTATGGCTACGAGCCACGTAATATCCTTAAAAACACCTTGA-----------------CGAG
droPer2 scaffold_3:666576-666826 + GCTA-TATAAGATACCAGGAGGACGTCAGGAATGCCAGTACCCTTATAATGACATCAA---------------------------GCCGATGC-CTTTTTCGACCGTACACATGGACCACCTGGGACCTT---TTCCAAGGAGTTCAA------AACGGAATGATC----ATATTCTTGTTATTGTCGACGCATTTACTAAATTCACCATAGTGCGAGCGGTAACAAGTACAG------------CAACTAAACACGTCAT------------------------------TGATACGCTGCAGGACGTAACCAGCCATTTGGGAATGCCAAACC
droWil2 scf2_1100000004591:15036-15287 + GCTACTATAAGTCTAAAGGAGGAAAGCCTGAAGGTCGCATGCATTACAACGATGTTGA---------------------------ACCGGTTC-CTTTTCGTCGACTTCACGCAGATCATTTGGGTCCTT---TTATTCGAAGCAAAC------GAGGAAATACTC----ATATACTGGCTATATCTGATTCATTTAGTAAATTTCTAGTCGTAAAAACAGTAAAAAGTACAA------------AATAATTACCTGTTCT------------------------------ATCAACGCTAAACGAAGTTTCTAGTTACTTTGGCTTGCCAAATT
droVir3 scaffold_12970:854467-854717 + ATTT-TTTAAGCAACGAGGTGGTCGCAAAAAGGGACAATATCATTATGACGACATCAA---------------------------GCCAATAC-CATTTTCAACGGCTCATATCGACCACCTGGGACCAT---TTCCAAAGAGTTCGA------AACGCAACGAGC----ACATATTTGTTTGTGTCGATGCATTTACCAAATTTACGATTATGCGCGCCGTTAAAAGCACAG------------CAACCAAGCACGTCAT------------------------------CGATATCCTCAAAGAAGTAACCAGCTATCTGGGAGTGCCACAAA
droAna3 scaffold_6924:1656-1906 - ATGTC-GAACAACATAAAGCACATCC-----------TTAACGCTGTAAGGACACCGAGAGCCAACGGTCATGCAGAGAGAACGAACAGAATTATTTTGTCCATGCT---------------------ACTGCCTTCG---------AATGAAA------ACGATAAGCGATGGGACGAAATGCTACGATCTATCCAGTGGAGCATTAAT----A---CC------------ATGGTAAATAGCACAACTAAATGTTCCCCATTTCAGCTTCTCTATGGATACGAGCCAAGAGATATTTTAAAGAACACCCTGA-----------------CCAG
droBip1 scf7180000391572:5565-5813 - AGT-C-GAACAAGGTAAAGC-TATCC-----------TTAACGCTGAAAGGACACCGAGAGAAAACAGTCATGCAGAACGAATGAATAGGAATTTTTTTTCCATGTT---------------------GTTACCTTCG---------AATGACA------ACGAAAATCGATGGAAAGAAATCTTACTATCAATCTAGTGGAGCATTAAT----A---CC------------ATAGTAAATAGCACAACAAAGTGTTCCCCATTTCAGTTTCTTTTTGGATACGAGCCCCGAGATATCCTAAAGAATACATTGA-----------------CCAG
droKik1 scf7180000299625:12269-12519 + TATG-TATAAAATACCAGGTGGACGACACGAAGGTCAGTACCACTATGATGACATCAA---------------------------GCCGATTC-CCTTTTCCACCGTACACATGGATCATCTGGGACCTT---TTCCGAAGAGTTCAA------AGCGAAATGAAC----ATATCCTCGTACTTGTCGACGCTTTCACCAAGTTCACCATAGTTCGAGCAGTAAAAAGTACAG------------CAACTAAACACGTCAT------------------------------TGATTCCCTGCAAGAAGTCACCAGCTACGTGGGAATGCCAGAGA
droFic1 scf7180000453928:74517-74767 - AAGTC-AAATAATGTAAAGCACATAC-----------TCAATGCTGTGAGGACACCTAGAGCAAATGGACATGCAGAGCGAACAAATCGAGTTATTCTTTCAATGTT---------------------ATTGCCCTTA---------AATGAAA------AAGAAAAACGTTGGGATGAAAACATGCGTACCATCCAGTGGAGTATTAAC----A---CC------------ATGATAAACAGCACTACTAAATGTTCCCCATTTCAGCTTTTGTATGGTTACGAGCCCCGAGATATTCTGAAGAACACATTGA-----------------CAAA
droEle1 scf7180000490148:4251-4454 + ATTT-TTTAATAAAACAGGTAAAACT---GAGGGTTTTTTACATCCTATTCCGAACGG---------------------------TACAAGTC-CGTTTGAAGTTATTCATATTGATCACTATGGTCCGA---TAAATAGCAAGGAAA------CGAATAAAAAGC----ACATACTAGTAATAATTGACGCATGTACAAAATTCACCAGATTATATC---------------------------------------------------------------------CAACCAAGATCGTACAGTAGACCTAAA-----------------AACA
droRho1 scf7180000770320:5062-5312 + GTTT-TATAAAACACCAGGTGGACGTCAGGAAGGTCAATACCACTACGATGACATCAA---------------------------GCCGATCC-CCTTTTCCACGATACATATGGACCACCTGGGACCAT---TTCCAAAGAGTTCAA------AGAGAAACGAGC----ATATTCTCGTGATAGTCGACGCATTTACCAAATTCACCATCGTACGAGCGGTGAAAAGTACAG------------CAACCAAACATGTCCT------------------------------GGATGTCCTGCAAGAGGTAACCAGCTACCTGGGAATGCCAGATC
droBia1 scf7180000301518:1338151-1338401 + GTTT-TATAAAACACCAGGTGGACGTCAGGAAGGTCAATACCACTACGACGACATCAA---------------------------GCCGATTC-CATTTTCCACGATACACATGGACCACCTGGCGCCAT---TTCCGAAGAGTTCCA------AGAGAAACGAAC----ATATTCTCGTAATAGCCGATGCATTTACCAAGTTCACCATCGTTTGAGCGGTGAAAAGTACAG------------CAACCAAACATGTCCT------------------------------GAATGTTCTGCAAGAAGTTACCAGCTACCTGGGAATGCCAGACC
droTak1 scf7180000415879:23782-24032 + GTTT-TATAAATCACCAGGTGGACGCCAGGAAGGTCAGTACCACTACGATGATATCAA---------------------------GCCGATTC-CATTTTCAACCGTACACATGGATCACCTGGGACCGT---TTCCGAAGAGTTCCA------AAAGAAATGAGC----ATATTCTTGTGATAGTCGACGCCTTCACCAAATTCACAATAGCGCGAGCGGTGAAAAGTACAG------------CAACTAAGCACGTCCT------------------------------GGATGTACTACAAGATGTCACCAGCTACTTGGGAATGCCAGATC
droEug1 scf7180000408770:9293-9543 - AAGTC-GAACAATGTGAAGCAAATCC-----------TCAATGCTGTAAGGACACCGAGAGCCAATGTTCATGCAGAGCGAACAAACCGCATAATTCTGTCAATGTT---------------------ATTGCTTTCA---------AATGACA------ACGACAAGCGTTGGGATGACAATATTCGATCAATCCAGTGGAGCATTAAT----A---CC------------ATGGTAAATAGCACTACTAAAGGCTCCCCATTTCAGCTTCTTTACGGTTACGAGCCCCGCGACATTTTGAAGAACATGATAA-----------------CCAA
dm3 chrU:6657930-6658180 + CCTG-TATAAGCAACGAGGAGGTCGCCAAGAGGGTCAATACCATTACGATAACATCAA---------------------------GCCAGTAC-CGTTCGCTACGGTACACATCGATCATCTAGAACCTT---TTCCGAGAAGTTCCA------AGCGTAATGAGC----ATATCCTGGTAATCGTTGATGCATTTACAAAGTTTACGATCATACGAGTCGTTAAAAGCACCG------------CAACGCGACACGTTAT------------------------------TGAAATTCTCCGAGATGTTTGCAGCTACGGTGGAATGCCTGAAA
droSim2 node_8958:4520-4766 - CGAGG-ACATA------AGCATGTAC-----------TTAATACTGTTCGCACCCCGCTAGCAAATGGACATGCCGAACGTACTAACCGCATAATCCTATAAATGCT---------------------ATTGCCTACT---------GTTGAGA------ATGAGAAGCGCTGGGATGAGAAACAGTACCAAATCCAGTGGAGCATTAAC----A---CG------------ATGACCAACAAGACTACTAATCGTTCTCCATTTCAGCTATTATATTGTTATGAGCCACGAGACACGTTGAGGAACTGTGT------------AG---TACAAG
droSec2 scaffold_62:49952-50185 - AAACC-GAATAATGTGGAGCACATAC-----------TCAATGCAGTCAGAACACCAAGAGCTAATGGTCATGCTGACCGAACTAACCGAATTATATTATCAATGTT---------------------ACTACCTTCA---------AATGAGA------ATGAAAAGCGTTGGGATGAGCAAACACGCTCGATTCAATGGAGTGA-AAC----G---CA------------ATGATAAATAGTACTCTTAAATGTTCTCCTTTTCAGCTCTTGTATGGCTATGAGACCCAAGATT---------------------------------TAAAAA
droYak3 v2_chr2h_random_003:414930-415180 - AAGTC-GAACAATGTAAAGCATATAC-----------TCAATGCTGTGAGAACACCAAGAGCCAACGGTCATGCAGAAAGGACAAATCGAATTATTATGTCAATGCT---------------------TTTGCCTTCA---------AATGAAA------ACGAGAAACGTTGGGACGAAATGCTGCGATCAATCCAGTGGAGCATTAAT----A---CC------------ATGGTAAATAGCACTACTAAATGTTCCCCATTCCAGCTTCTATATGGTTATGAGACCCGAGATGTCCTTAAAAACACGCTGA-----------------CGAG
droEre2 scaffold_4929:25857412-25857665 - AAGTC-GAATAATGTGAAGCATATAC-----------TCAACGCCATGAAAACACCAAGAGCCAACAGTCATGCAGAGAGGACAAATCGAATTATTTTGTCAATGCT---------------------TTTGCCTTCA---------AATGAAA------ACGAGAAACGTTGGGACGAAATGCTGCGATCAATCTAGTAGAGCATTAAT----A---CC-----ATGCACTA--CTACCAAGCACTACTAAATGCTCCCCATTCCAGCTTCTATATGGTT--GAGCCCCGAGATGTCCTTAAATACACGCTGA-----------------CGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGATC-GAATAATATAAAGCATGTAC-----------TCAATGCAGTAAGGACACCAAGAGCTAACGGTCATGCAGAATGAACGAACCGGATTATTTTATCAATGCT---------------------TCTACCTTCA---------AATAAAAA-----AGGAAAAACGATGGGACGACAA-ATACGATCAATCCAGTGGAGCATCAAC----A---CC------------ATGGTAAATAGCACTACTAAATGCTCTCCATTTCAGTTATTGTATGGCTACGAGCCACGTAATATCCTTAAAAACACCTTGA-----------------CGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................TCCAGTGGAGCATCAAC----A---CC------------ATGG...................................................................................................2436.001801800000000
.................................................................................................................................................................................................TCCAGTGGAGCATCAAC----A---CC------------ATG....................................................................................................2332.3370700000000
......................................................................................................................................................................................................TGGAGCATCAAC----A---CC------------ATGGTAAATAG............................................................................................2621.5030300000000
...............................................................................................................................................................................................AATCCAGTGGAGCATCAAC----A---CC------------ATGG...................................................................................................2631.3340400000000
..................................................................................................................................................................................................CCAGTGGAGCATCAAC----A---CC------------ATGG...................................................................................................2331.3340400000000
.................................................................................................................................................................................................TCCAGTGGAGCATCAAC----A---CC------------AAA....................................................................................................2330.6720100001000
.................................................................................................................................................................................................TCCAGTGGAGCATCAAC----A---CC------------A......................................................................................................2130.3310100000000
.................................................................................................................................................................................................TCCAGTGGAGCATCAAC----A---CC------------ATGGTA.................................................................................................2630.3310100000000
................................................................................................................................................................................................................................................................................TGTATGGCTACGAGCCACG............................................1930.3310100000000
..............................................................................................................................................................................................................................................................................ATTGTATGGCTACGAGCCACG............................................2130.3310100000000
..............................................................................................................................................................................................CAATCCAGTGGAGCATCAAC----A---CC------------ATGG...................................................................................................2730.3310100000000
.................................................................................................................................................................................................TCCAGTGGAGCATCAAC----A---CC------------ATGGT..................................................................................................2530.3310100000000
..............................................................................................................................................................................................................................................................................ATTGTATGGCTACGAGCCAC.............................................2030.3310100000000
..............................................................................................................................................................................................CAATCCAGTGGAGCATCAAC----A---CC------------.......................................................................................................2330.3310100000000
droPer2
GCTA-TATAAGATACCAGGAGGACGTCAGGAATGCCAGTACCCTTATAATGACATCAA---------------------------GCCGATGC-CTTTTTCGACCGTACACATGGACCACCTGGGACCTT---TTCCAAGGAGTTCAA------AACGGAATGATC----ATATTCTTGTTATTGTCGACGCATTTACTAAATTCACCATAGTGCGAGCGGTAACAAGTACAG------------CAACTAAACACGTCAT------------------------------TGATACGCTGCAGGACGTAACCAGCCATTTGGGAATGCCAAACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GCTACTATAAGTCTAAAGGAGGAAAGCCTGAAGGTCGCATGCATTACAACGATGTTGA---------------------------ACCGGTTC-CTTTTCGTCGACTTCACGCAGATCATTTGGGTCCTT---TTATTCGAAGCAAAC------GAGGAAATACTC----ATATACTGGCTATATCTGATTCATTTAGTAAATTTCTAGTCGTAAAAACAGTAAAAAGTACAA------------AATAATTACCTGTTCT------------------------------ATCAACGCTAAACGAAGTTTCTAGTTACTTTGGCTTGCCAAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................TGCATTACAACGATGTTGA---------------------------ACCGG.....................................................................................................................................................................................................................................................24140.29404000
....................................................................................................................................................................................................................................................................................................................TTTCTAGTTACTTTGGCTTGCCAAAT.2690.22202000
...........................................................................................................................................................................................................................................................TACCTGTTCT------------------------------ATCAACGCTAAACGAAG...........................2770.14101000
....................................................................................................................................................................................................................................................................................................................TTTCTAGTTACTTTGGCTTGCCAAATT2780.13101000
.......................................................................................................................................................................................................................................................................................................................CTAGTTACTTTGGCTTGCCAAAT.2390.11101000
....................................................................................................................................................................................................................................................................................................................TTTCTAGTTACTTTGGCTTGCCAAA..25100.10101000
....................................................................................................................................................................................................................................................................................................................TTTCTAGTTACTTTGGCTTGCCA....23100.10101000
...............................................................................................................................................................AATACTC----ATATACTGGCTATATC.....................................................................................................................................................23110.09101000
................................................................................................................................................................ATACTC----ATATACTGGCTATATCT....................................................................................................................................................23110.09101000
............................TGAAGGTCGCATGCATTACAACGATGT........................................................................................................................................................................................................................................................................................27120.08100010
..........................................ATTACAACGATGTTGA---------------------------ACCGGTTC-.................................................................................................................................................................................................................................................24130.08101000
..........................................ATTACAACGATGTTGA---------------------------ACCGGTTC-CTT..............................................................................................................................................................................................................................................27130.08101000
....................................GCATGCATTACAACGATGTTGA---------------------------ACCG......................................................................................................................................................................................................................................................26130.08101000
......................................ATGCATTACAACGATGTTGA---------------------------ACCGG.....................................................................................................................................................................................................................................................25140.07100010
.............TAAAGGAGGAAAGCCTGAAGGTCG..........................................................................................................................................................................................................................................................................................................24140.07101000
.............TAAAGGAGGAAAGCCTGAAGGTC...........................................................................................................................................................................................................................................................................................................23140.07101000
.......................................TGCATTACAACGATGTTGA---------------------------ACCGGT....................................................................................................................................................................................................................................................25140.07101000
..TACTATAAGTCTAAAGGAGGAAAGCC...................................................................................................................................................................................................................................................................................................................26160.06100010
.CTACTATAAGTCTAAAGGAGG.........................................................................................................................................................................................................................................................................................................................21170.06101000
.......TAAGTCTAAAGGAGGAAAGCCTGAAGG.............................................................................................................................................................................................................................................................................................................27190.05100010
..........GTCTAAAGGAGGAAAGCCTGAAGG.............................................................................................................................................................................................................................................................................................................24190.05100010
droVir3
ATTT-TTTAAGCAACGAGGTGGTCGCAAAAAGGGACAATATCATTATGACGACATCAA---------------------------GCCAATAC-CATTTTCAACGGCTCATATCGACCACCTGGGACCAT---TTCCAAAGAGTTCGA------AACGCAACGAGC----ACATATTTGTTTGTGTCGATGCATTTACCAAATTTACGATTATGCGCGCCGTTAAAAGCACAG------------CAACCAAGCACGTCAT------------------------------CGATATCCTCAAAGAAGTAACCAGCTATCTGGGAGTGCCACAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................AGGGACAATATCATTATGACGAC..........................................................................................................................................................................................................................................................................................2392.6724000010000000000000000000204163330000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAAGAAGTAACCAGCTATCTGGGAG.........2512.002000000000000000000000000002000000000000000000000000000000000000
..............................AGGGACAATATCATTATGACGACATC.......................................................................................................................................................................................................................................................................................2681.3811000000000000000000000000103221100000000100000000000000000000000
..............................AGGGACAATATCATTATGACGACA.........................................................................................................................................................................................................................................................................................2491.3312000000200000000000000000102040001000101000000000000000000000000
..............................AGGGACAATATCATTATGACGA...........................................................................................................................................................................................................................................................................................2291.1110000010000000000000000000000131011010100000000000000000000000000
.............................................................................................................................................................GCAACGAGC----ACATATTTGTTTG........................................................................................................................................................2221.002000000000000000000000000000001000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAAGAAGTAACCAGCTATCTGGGAGT........2611.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................AAGAGTTCGA------AACGCAACGAGC----.....................................................................................................................................................................2221.002000000000000000000000000000000200000000000000000000000000000000
.......................................................................................................................................................................................................AAATTTACGATTATGCGCGC....................................................................................................................2051.005000000100000000000000003000000000001000000000000000000000000000
............................................................................................C-CATTTTCAACGGCTCATATCGACCAC.......................................................................................................................................................................................................................2711.001000000000000000000000000000000000000001000000000000000000000000
..............................AGGGACAATATCATTATGACGACATCA......................................................................................................................................................................................................................................................................................2780.887000010000000000000000000022010010000000000000000000000000000000
.......................................................................................................................................................................................TGTCGATGCATTTACCAAATTTACGA..............................................................................................................................2650.804000000000000000000000000002200000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAAGAAGTAACCAGCTATCTGG............2280.756000000000000000000000000103200000000000000000000000000000000000
..............................AGGGACAATATCATTATGACGACAT........................................................................................................................................................................................................................................................................................2590.676000000000000000000000000100050000000000000000000000000000000000
.......................................................................................................................................................................................................AAATTTACGATTATGCGCGCC...................................................................................................................2150.603000010000000000000000000000000000001001000000000000000000000000
......................................................................................................................................................................................................................................CAG------------CAACCAAGCACGTCAT------------------------------CGATATCC....................................2740.502001000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................AAGAGTTCGA------AACGCAACGAGC----ACAT.................................................................................................................................................................2620.501000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................ACGCAACGAGC----ACATATTTGTTTGTG......................................................................................................................................................2620.501000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................AAGAGTTCGA------AACGCAACGAGC----ATT..................................................................................................................................................................2520.501000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................AAGAGTTCGA------AACGCAACGAGC----ACA..................................................................................................................................................................2520.501000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................AACGCAACGAGC----ACATATTTGTC..........................................................................................................................................................2320.501000000000000000000000000000000000000000100000000000000000000000
..TT-TTTAAGCAACGAGGTGGTC.......................................................................................................................................................................................................................................................................................................................2140.502000000000000000000000000000000010000001000000000000000000000000
..............................................................................................................................................................................................................................TAAAAGCACAG------------CAACCAAGCACGTCA...........................................................................2670.433000000000000000000001000001010000000000000000000000000000000000
.......................................................................................................................................................................................................AAATTTACGATTATGCGCGCCGT.................................................................................................................2350.402000000100000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CAACCAAGCACGTCAT------------------------------CGATATCC....................................2450.402000010000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................TGTCGATGCATTTACCAAATTTACG...............................................................................................................................2550.402000000000000000000000000000100010000000000000000000000000000000
.......................................................................................................................................................................................................AAATTTACGATTATGCGCGCCG..................................................................................................................2250.402000000000000000000000000100000000000010000000000000000000000000
..TT-TTTAAGCAACGAGGTGGTCGCA....................................................................................................................................................................................................................................................................................................................2440.251000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TATCCTCAAAGAAGTAACCAGCT..................2380.252000000000000000000000000100000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TATCCTCAAAGAAGTAACCAGC...................2280.252000000100000000000000000000000001000000000000000000000000000000
..............................AGGGACAATATCATTATGACG............................................................................................................................................................................................................................................................................................2190.222000000000000000000000000000020000000000000000000000000000000000
.......................................................................................................................................................................................................AAATTTACGATTATGCGCGCCGTTC...............................................................................................................2550.201000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CAAGCACGTCAT------------------------------CGATATCCTCAA................................2450.201001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TGTCGATGCATTTACCAAATTTACC...............................................................................................................................2550.201001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................AAATTTACGATTATGCGCGCCGTTTT..............................................................................................................2650.201000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................CATTTACCAAATTTACGATTATGCGCG.....................................................................................................................2750.201000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CAACCAAGCACGTCAT------------------------------CGATATCCC...................................2550.201000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................TTTACGATTATGCGCGCCGTTAA..............................................................................................................2350.201000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTTGTGTCGATGCATTTACCAAATTT..................................................................................................................................2650.201000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................AAATTTACGATTATGCGCGCCGTTAAAC............................................................................................................2850.201000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CAG------------CAACCAAGCACGTCAT------------------------------CGATA.......................................2460.171000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................CAG------------CAACCAAGCACGTCAT------------------------------CGAT........................................2360.171000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TAAAAGCACAG------------CAACCAAGCACGT.............................................................................2470.141000000000000000000001000000000000000000000000000000000000000000
..................................ACAATATCATTATGACGACATCAA---------------------------G.........................................................................................................................................................................................................................................................2570.141000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GATATCCTCAAAGAAGTAACCAGCTATC...............2870.141000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................TAAAAGCACAG------------CAACCAAGCACGTC............................................................................2570.141000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CAT------------------------------CGATATCCTCAAAGAAGTAACCAGC...................2870.141000000000000000000000000000100000000000000000000000000000000000
.....................................ATATCATTATGACGACATCAA---------------------------G.........................................................................................................................................................................................................................................................2270.141000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................TAAAAGCACAG------------CAACCAAGCACG..............................................................................2370.141000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAAGAAGTAACCAGCTATCTGGGT..........2480.131000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GATATCCTCAAAGAAGTAACCAGC...................2480.131000000000000000000000000000100000000000000000000000000000000000
..............................AGGGACAATATCATTATGACGACATCAA---------------------------..........................................................................................................................................................................................................................................................2880.131000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAAGAAGTAACCAGCTATCTG.............2180.131000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TAAAAGCACAG------------CAACCAAGCA................................................................................2190.111000000000000000000000000001000000000000000000000000000000000000
..............................AGGGACAATATCATTATG...............................................................................................................................................................................................................................................................................................18100.101000000000000000000000000000000010000000000000000000000000000000
droAna3
ATGTC-GAACAACATAAAGCACATCC-----------TTAACGCTGTAAGGACACCGAGAGCCAACGGTCATGCAGAGAGAACGAACAGAATTATTTTGTCCATGCT---------------------ACTGCCTTCG---------AATGAAA------ACGATAAGCGATGGGACGAAATGCTACGATCTATCCAGTGGAGCATTAAT----A---CC------------ATGGTAAATAGCACAACTAAATGTTCCCCATTTCAGCTTCTCTATGGATACGAGCCAAGAGATATTTTAAAGAACACCCTGA-----------------CCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................TAACGCTGTAAGGACACCGAGAGCC................................................................................................................................................................................................................................................................................25200.255320000
.....................................TTAACGCTGTAAGGACACCGAGAGC.................................................................................................................................................................................................................................................................................25200.204400000
...................................................................................................................................................................................................................................................................................................AGATATTTTAAAGAACACCCTGA-----------------CC..25200.153120000
......................................................................................................................................................................................................................................................................TTTCAGCTTCTCTATGGATACGAGC................................................25170.122100010
........ACAACATAAAGCACATCC-----------TTAACGC...................................................................................................................................................................................................................................................................................................25190.112110000
..............................................................................................................................................................................................................................................................................................CCAAGAGATATTTTAAAGAACACC.........................24200.102020000
......................................................................................................................................................GAAA------ACGATAAGCGATGGGACGAAA..........................................................................................................................................................25200.102200000
...........................................................AGCCAACGGTCATGCAGAGAG...............................................................................................................................................................................................................................................................21200.102000002
.....................................................................CATGCAGAGAGAACGAACAGAATTAT................................................................................................................................................................................................................................................26200.102200000
.................................................................................................................................................................................................................T----A---CC------------ATGGTAAATAGCACAACTAAATGT...............................................................................28200.102020000
.................................................................................................................................................................................................................................................................................................AGAGATATTTTAAAGAACACCCTGA-----------------CC..27200.102020000
.....................................................................CATGCAGAGAGAACGAACAGAATTATTT..............................................................................................................................................................................................................................................28200.102100010
........................................................................................................................................................................................................................................................................TCAGCTTCTCTATGGATACGAG.................................................22170.061001000
........................................................................................................................................................................................................................................................................TCAGCTTCTCTATGGATACGAGC................................................23170.061100000
.................................................................................................................................................................................................................................................................CCCCATTTCAGCTTCTCTATGGATA.....................................................25170.061100000
...........ACATAAAGCACATCC-----------TTAACGCTGTAAG.............................................................................................................................................................................................................................................................................................28170.061100000
....................................................................................................................................................................................................................................................................CATTTCAGCTTCTCTATGGATACGAGC................................................27170.061100000
.......................................................................................................................................................................................................................................................................TTCAGCTTCTCTATGGATACGAGCC...............................................25170.061100000
...........ACATAAAGCACATCC-----------TTAACGCTGT................................................................................................................................................................................................................................................................................................25180.061100000
..........................................................................................................................................................................................................................................................................AGCTTCTCTATGGATACGAGCCAAGA...........................................26180.061100000
....................................................................................................................................................ATGAAA------ACGATAAGCGATGGGAC..............................................................................................................................................................23200.051100000
..............................................................CAACGGTCATGCAGAGAGAACGAACA.......................................................................................................................................................................................................................................................26200.051100000
......................................................................................................................................................GAAA------ACGATAAGCGATGGGACG.............................................................................................................................................................22200.051010000
.....................................................................CATGCAGAGAGAACGAAC........................................................................................................................................................................................................................................................18200.051010000
...............................................................................................TTTGTCCATGCT---------------------ACTGCCTTCG---------AATG........................................................................................................................................................................................26200.051100000
.....................................................................................................................................................................................TGCTACGATCTATCCAGTGGAGCAT.................................................................................................................................25200.051010000
....................................................................................................................................................ATGAAA------ACGATAAGCGATGGGACGA............................................................................................................................................................25200.051010000
.........................................................................................................................................................................................................................................TGGTAAATAGCACAACTAAATGTTCCC...........................................................................27200.051100000
........................................................................................................................................................................................TACGATCTATCCAGTGGAGCATT................................................................................................................................23200.051100000
................................................................................................................................................................................CGAAATGCTACGATCTATCCAGT........................................................................................................................................23200.051100000
.................................................................................................................................................................CGATAAGCGATGGGACGAAATGC.......................................................................................................................................................23200.051001000
.......................................................................................................................................TCG---------AATGAAA------ACGATAAGCGATGGGA...............................................................................................................................................................26200.051010000
.......................................................................................................................................................................................CTACGATCTATCCAGTGGAGCATTAA..............................................................................................................................26200.051100000
............................................TGTAAGGACACCGAGAGCCAACGGT..........................................................................................................................................................................................................................................................................25200.051100000
............................................................................................................................................................................................................................................TAAATAGCACAACTAAATGTTCCCCA.........................................................................26200.051010000
.................................................................................................................................................................................................................................................AGCACAACTAAATGTTCCCCATTTCAGC..................................................................28200.051010000
......................................................................................................................................TTCG---------AATGAAA------ACGATAAGCGATGGG................................................................................................................................................................26200.051100000
.....................................................................................................................................................................AAGCGATGGGACGAAATG........................................................................................................................................................18200.051100000
...................................................................................................................................................................................................................................................................................ATGGATACGAGCCAAGAGATATTTT...................................25200.051010000
.......................................................................................................................................................................................CTACGATCTATCCAGTGGAGCATT................................................................................................................................24200.051100000
.......................................................................................................TGCT---------------------ACTGCCTTCG---------AATGAAA------ACGATAAG.......................................................................................................................................................................29200.051100000
..........................................GCTGTAAGGACACCGAGAGCCAACGG...........................................................................................................................................................................................................................................................................26200.051100000
............................................TGTAAGGACACCGAGAGCCAACGGTC.........................................................................................................................................................................................................................................................................26200.051010000
........................................................................................................................................................................................TACGATCTATCCAGTGGAGCATTAAT----A---C....................................................................................................................28200.051010000
....................................................................................................................................................................TAAGCGATGGGACGAAATGC.......................................................................................................................................................20200.051010000
......................................TAACGCTGTAAGGACACCGAGAGCCA...............................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................................................................................C------------ATGGTAAATAGCACAACTAAATGT...............................................................................25200.051001000
.....................................................................CATGCAGAGAGAACGAACAGAATT..................................................................................................................................................................................................................................................24200.051010000
...................................................................................................TCCATGCT---------------------ACTGCCTTCG---------AATGAAA------AC.............................................................................................................................................................................27200.051100000
......................................................................................................................................................GAAA------ACGATAAGCGATGGGACGA............................................................................................................................................................23200.051010000
......................................TAACGCTGTAAGGACACCGAGAGCT................................................................................................................................................................................................................................................................................25200.051100000
.............................................................................................................................................................................................TCTATCCAGTGGAGCATTAAT----A---CC------------.......................................................................................................24200.051100000
.....................................................................CATGCAGAGAGAACGAACAGAAT...................................................................................................................................................................................................................................................23200.051100000
......................................TAACGCTGTAAGGACACCGAGAGC.................................................................................................................................................................................................................................................................................24200.051010000
droBip1
AGT-C-GAACAAGGTAAAGC-TATCC-----------TTAACGCTGAAAGGACACCGAGAGAAAACAGTCATGCAGAACGAATGAATAGGAATTTTTTTTCCATGTT---------------------GTTACCTTCG---------AATGACA------ACGAAAATCGATGGAAAGAAATCTTACTATCAATCTAGTGGAGCATTAAT----A---CC------------ATAGTAAATAGCACAACAAAGTGTTCCCCATTTCAGTTTCTTTTTGGATACGAGCCCCGAGATATCCTAAAGAATACATTGA-----------------CCAGSizeHit CountTotal NormTotal
No Reads
droKik1
TATG-TATAAAATACCAGGTGGACGACACGAAGGTCAGTACCACTATGATGACATCAA---------------------------GCCGATTC-CCTTTTCCACCGTACACATGGATCATCTGGGACCTT---TTCCGAAGAGTTCAA------AGCGAAATGAAC----ATATCCTCGTACTTGTCGACGCTTTCACCAAGTTCACCATAGTTCGAGCAGTAAAAAGTACAG------------CAACTAAACACGTCAT------------------------------TGATTCCCTGCAAGAAGTCACCAGCTACGTGGGAATGCCAGAGASizeHit CountTotal NormTotal
No Reads
droFic1
AAGTC-AAATAATGTAAAGCACATAC-----------TCAATGCTGTGAGGACACCTAGAGCAAATGGACATGCAGAGCGAACAAATCGAGTTATTCTTTCAATGTT---------------------ATTGCCCTTA---------AATGAAA------AAGAAAAACGTTGGGATGAAAACATGCGTACCATCCAGTGGAGTATTAAC----A---CC------------ATGATAAACAGCACTACTAAATGTTCCCCATTTCAGCTTTTGTATGGTTACGAGCCCCGAGATATTCTGAAGAACACATTGA-----------------CAAASizeHit CountTotal NormTotal
No Reads
droEle1
ATTT-TTTAATAAAACAGGTAAAACT---GAGGGTTTTTTACATCCTATTCCGAACGG---------------------------TACAAGTC-CGTTTGAAGTTATTCATATTGATCACTATGGTCCGA---TAAATAGCAAGGAAA------CGAATAAAAAGC----ACATACTAGTAATAATTGACGCATGTACAAAATTCACCAGATTATATC---------------------------------------------------------------------CAACCAAGATCGTACAGTAGACCTAAA-----------------AACASizeHit CountTotal NormTotal
No Reads
droRho1
GTTT-TATAAAACACCAGGTGGACGTCAGGAAGGTCAATACCACTACGATGACATCAA---------------------------GCCGATCC-CCTTTTCCACGATACATATGGACCACCTGGGACCAT---TTCCAAAGAGTTCAA------AGAGAAACGAGC----ATATTCTCGTGATAGTCGACGCATTTACCAAATTCACCATCGTACGAGCGGTGAAAAGTACAG------------CAACCAAACATGTCCT------------------------------GGATGTCCTGCAAGAGGTAACCAGCTACCTGGGAATGCCAGATCSizeHit CountTotal NormTotal
No Reads
droBia1
GTTT-TATAAAACACCAGGTGGACGTCAGGAAGGTCAATACCACTACGACGACATCAA---------------------------GCCGATTC-CATTTTCCACGATACACATGGACCACCTGGCGCCAT---TTCCGAAGAGTTCCA------AGAGAAACGAAC----ATATTCTCGTAATAGCCGATGCATTTACCAAGTTCACCATCGTTTGAGCGGTGAAAAGTACAG------------CAACCAAACATGTCCT------------------------------GAATGTTCTGCAAGAAGTTACCAGCTACCTGGGAATGCCAGACCSizeHit CountTotal NormTotal
No Reads
droTak1
GTTT-TATAAATCACCAGGTGGACGCCAGGAAGGTCAGTACCACTACGATGATATCAA---------------------------GCCGATTC-CATTTTCAACCGTACACATGGATCACCTGGGACCGT---TTCCGAAGAGTTCCA------AAAGAAATGAGC----ATATTCTTGTGATAGTCGACGCCTTCACCAAATTCACAATAGCGCGAGCGGTGAAAAGTACAG------------CAACTAAGCACGTCCT------------------------------GGATGTACTACAAGATGTCACCAGCTACTTGGGAATGCCAGATCSizeHit CountTotal NormTotal
No Reads
droEug1
AAGTC-GAACAATGTGAAGCAAATCC-----------TCAATGCTGTAAGGACACCGAGAGCCAATGTTCATGCAGAGCGAACAAACCGCATAATTCTGTCAATGTT---------------------ATTGCTTTCA---------AATGACA------ACGACAAGCGTTGGGATGACAATATTCGATCAATCCAGTGGAGCATTAAT----A---CC------------ATGGTAAATAGCACTACTAAAGGCTCCCCATTTCAGCTTCTTTACGGTTACGAGCCCCGCGACATTTTGAAGAACATGATAA-----------------CCAASizeHit CountTotal NormTotal
No Reads
dm3
CCTG-TATAAGCAACGAGGAGGTCGCCAAGAGGGTCAATACCATTACGATAACATCAA---------------------------GCCAGTAC-CGTTCGCTACGGTACACATCGATCATCTAGAACCTT---TTCCGAGAAGTTCCA------AGCGTAATGAGC----ATATCCTGGTAATCGTTGATGCATTTACAAAGTTTACGATCATACGAGTCGTTAAAAGCACCG------------CAACGCGACACGTTAT------------------------------TGAAATTCTCCGAGATGTTTGCAGCTACGGTGGAATGCCTGAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...G-TATAAGCAACGAGGAGGTCGCCAA..................................................................................................................................................................................................................................................................................................................2561.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TGAAATTCTCCGAGATGTTTGCAGC...................2520.5010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TAT------------------------------TGAAATTCTCCGAGATGTTTGCAGC...................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCCA------AGCGTAATGAGC----ATATCCTGG............................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CATTTACAAAGTTTACGATCATACGAG.....................................................................................................................2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TTACAAAGTTTACGATCATACGAG.....................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................................................................................................................................................................TTAT------------------------------TGAAATTCTCCGAGATG...........................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGATAACATCAA---------------------------GCCAGTAC-CGTTC............................................................................................................................................................................................................................................2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CGAGAAGTTCCA------AGCGTAAT.............................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CCTT---TTCCGAGAAGTTCCA------AG...................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................AACATCAA---------------------------GCCAGTAC-CGTTC............................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TG-TATAAGCAACGAGGAGGTCGCCA...................................................................................................................................................................................................................................................................................................................2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CGTTGATGCATTTACAAAGTTTACGA..............................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GATGCATTTACAAAGTTTACGAT.............................................................................................................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGAGG-ACATA------AGCATGTAC-----------TTAATACTGTTCGCACCCCGCTAGCAAATGGACATGCCGAACGTACTAACCGCATAATCCTATAAATGCT---------------------ATTGCCTACT---------GTTGAGA------ATGAGAAGCGCTGGGATGAGAAACAGTACCAAATCCAGTGGAGCATTAAC----A---CG------------ATGACCAACAAGACTACTAATCGTTCTCCATTTCAGCTATTATATTGTTATGAGCCACGAGACACGTTGAGGAACTGTGT------------AG---TACAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................TATAAATGCT---------------------ATTGCCTACT---------GTTGAG......................................................................................................................................................................................2611.00100000010000000000
.................................................................................................................................................................................................................................................................................................CGAGACACGTTGAGGAACTGT.........................2111.00100000010000000000
.........................................................................................................................................................................................................................................TGACCAACAAGACTACTAATCGTTC.............................................................................2520.50100000010000000000
.................................................................................................................................TTGCCTACT---------GTTGAGA------ATGAGAAGCGC....................................................................................................................................................................2720.50100000010000000000
...........................................................AGCAAATGGACATGCCGAACG...............................................................................................................................................................................................................................................................2120.50100000000001000000
.........................................................................................................................................T---------GTTGAGA------ATGAGAAGCGCTGGGA...............................................................................................................................................................2420.50100000010000000000
..........................................................................................................T---------------------ATTGCCTACT---------GTTGAGA------ATGAGAAG.......................................................................................................................................................................2620.50100000000001000000
droSec2
AAACC-GAATAATGTGGAGCACATAC-----------TCAATGCAGTCAGAACACCAAGAGCTAATGGTCATGCTGACCGAACTAACCGAATTATATTATCAATGTT---------------------ACTACCTTCA---------AATGAGA------ATGAAAAGCGTTGGGATGAGCAAACACGCTCGATTCAATGGAGTGA-AAC----G---CA------------ATGATAAATAGTACTCTTAAATGTTCTCCTTTTCAGCTCTTGTATGGCTATGAGACCCAAGATT---------------------------------TAAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAGTC-GAACAATGTAAAGCATATAC-----------TCAATGCTGTGAGAACACCAAGAGCCAACGGTCATGCAGAAAGGACAAATCGAATTATTATGTCAATGCT---------------------TTTGCCTTCA---------AATGAAA------ACGAGAAACGTTGGGACGAAATGCTGCGATCAATCCAGTGGAGCATTAAT----A---CC------------ATGGTAAATAGCACTACTAAATGTTCCCCATTCCAGCTTCTATATGGTTATGAGACCCGAGATGTCCTTAAAAACACGCTGA-----------------CGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................GATGTCCTTAAAAACACGCTGA-----------------CGA.2542.7511000000000011
......................ATAC-----------TCAATGCTGTGAGAACACCAAG....................................................................................................................................................................................................................................................................................2620.50101000000000
.....................................TCAATGCTGTGAGAACACCAAGAGCC................................................................................................................................................................................................................................................................................2620.50100100000000
.....................TATAC-----------TCAATGCTGTGAGAACACCAAG....................................................................................................................................................................................................................................................................................2720.50101000000000
.....................................................................................................................................................TGAAA------ACGAGAAACGTTGGGACGAAA..........................................................................................................................................................26140.50701600000000
.......................................................CAAGAGCCAACGGTCATGCAGAAAGGAC............................................................................................................................................................................................................................................................28160.50800000000008
.......................................................................................CGAATTATTATGTCAATGCT---------------------TTTGCC.........................................................................................................................................................................................................26110.27303000000000
...................................................................................................................................................................................................................................................CACTACTAAATGTTCCCCATTCCAGC..................................................................26170.24404000000000
.................................................................................................................................................................................................................................................AGCACTACTAAATGTTCCCCATTCCAGC..................................................................28160.19302100000000
....................................................................................................................................................................................................................................................................................................GATGTCCTTAAAAACACGCTGA-----------------C...2360.17101000000000
......................................................................................................................................................................................................................................................................................................TGTCCTTAAAAACACGCTGA-----------------C...2170.14101000000000
.................................................................................................................................................................................................................................................AGCACTACTAAATGTTCCCCATT.......................................................................23160.13202000000000
...................................................................................................................................................................................................................................................CACTACTAAATGTTCCCCATTCCAGCT.................................................................27170.12202000000000
...................................................................................................................................................................................................................................................CACTACTAAATGTTCCCCATTCCAG...................................................................25170.12202000000000
........................................................................................GAATTATTATGTCAATGCT---------------------TTTGCC.........................................................................................................................................................................................................25110.09101000000000
............................................................................................TATTATGTCAATGCT---------------------TTTGCCTT.......................................................................................................................................................................................................23120.08101000000000
............................................................................................TATTATGTCAATGCT---------------------TTTGCC.........................................................................................................................................................................................................21120.08100100000000
......................................................................................................................................................GAAA------ACGAGAAACGTTGGGACGAAA..........................................................................................................................................................25140.07100100000000
.........................................................................................................................................................................GTTGGGACGAAATGCTGCGATCAT..............................................................................................................................................24150.07101000000000
.......................................................................................................................................TCA---------AATGAAA------ACGAGAAACGTTGGGA...............................................................................................................................................................26150.07101000000000
.......................................................................................................................................TCA---------AATGAAA------ACGAGAAACGTTGGGAC..............................................................................................................................................................27150.07101000000000
....................................................................................AATCGAATTATTATGTCAATGCT---------------------TT.............................................................................................................................................................................................................25150.07101000000000
..............................................TGAGAACACCAAGAGCCAACGGTCA........................................................................................................................................................................................................................................................................25160.06101000000000
.................................................................................................................................................................................................................................................AGCACTACTAAATGTTCCCCATTC......................................................................24160.06101000000000
.................................................................................................................................................................................................................................................AGCACTACTAAATGTTCCCCATTCCAG...................................................................27160.06101000000000
..................................................................................................................................................................................................................................................GCACTACTAAATGTTCCCCATTCCT....................................................................25160.06101000000000
..............................................TGAGAACACCAAGAGCCAACGGTCATGC.....................................................................................................................................................................................................................................................................28160.06101000000000
.................................................................................................................................................................................................................................................AGCACTACTAAATGTTCCC...........................................................................19160.06101000000000
................................................AGAACACCAAGAGCCAACGGTCATG......................................................................................................................................................................................................................................................................25160.06101000000000
......................................................................................................................................................................................GCTGCGATCAATCCAGTGGAGCA..................................................................................................................................23160.06101000000000
......................................................................................................................................................................................GCTGCGATCAATCCAGTGGAGC...................................................................................................................................22160.06101000000000
.....................................................................................................................................................................................TGCTGCGATCAATCCAGTGGAGCA..................................................................................................................................24160.06101000000000
.......................................................................................................................................................................................CTGCGATCAATCCAGTGGAGCATT................................................................................................................................24160.06101000000000
......................................................................................................................................................................................GCTGCGATCAATCCAGTGGAGCATTAA..............................................................................................................................27160.06100100000000
.................................................................................................................................................................................................................................................AGCACTACTAAATGTTCCCCATTCCA....................................................................26160.06101000000000
....................................................................................................................................................................................................................................................ACTACTAAATGTTCCCCATTCCAGC..................................................................25170.06101000000000
.........................................................................................................................................................................................................................................................TAAATGTTCCCCATTCCAGCTTC...............................................................23170.06101000000000
...................................................................................................................................................................................................................................................CACTACTAAATGTTCCCCATTCCAGCTTC...............................................................29170.06101000000000
...................................................................................................................................................................................................................................................CACTACTAAATGTTCCCCATTC......................................................................22170.06101000000000
droEre2
AAGTC-GAATAATGTGAAGCATATAC-----------TCAACGCCATGAAAACACCAAGAGCCAACAGTCATGCAGAGAGGACAAATCGAATTATTTTGTCAATGCT---------------------TTTGCCTTCA---------AATGAAA------ACGAGAAACGTTGGGACGAAATGCTGCGATCAATCTAGTAGAGCATTAAT----A---CC-----ATGCACTA--CTACCAAGCACTACTAAATGCTCCCCATTCCAGCTTCTATATGGTT--GAGCCCCGAGATGTCCTTAAATACACGCTGA-----------------CGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 02:08 AM