ID:

dps_1884

 Coordinate:

Unknown_group_231:19803-19953 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.7 -17.2 -17.1

Flybase annnotation

exon [dpse_GLEANR_9602:2]; CDS [Dpse\GA29108-cds]; intron [Dpse\GA29108-in]

Repeatable elements

NameClassFamilyStrand
DIVER_I-intLTRPao-
mature
  1. dps_1884  Unknown_group_231:19854-19876 -
  2. Unknown_group_61:1087-1109 -
star
  1. dps_1884  Unknown_group_231:19928-19953 -
  2. Unknown_group_61:1161-1186 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTACGATCAGCAAGAATGGAACTTCGAAAGTGGTCTGCGAATGACGCTTCTCTGCTAAAAGACATACCTCTCGATCATTTGTCTCGAAAGACATTATCAGAGTTTGAGTACCAAACCTTAGGTCACATCAAGACTATTTTGGGTTCAAGGTAAATTTTGAAATCAGTCACGCACATACTAAACGTTCATTACTTTCTACAGTCGCCCGACTGTACGACCCCTTAGGTTTCATCACGCCCTGTGTCATGACC
**************************************************(((................(((((......((((.((..(((.(((..((.(((((.....)))))))))))))...)).))))....)))))....)))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 GSM343916
embryo
 SRR902011
testis
 M062
head
 M059
embryo
...............................................................................................................................................................................................................GACTAAACGACCCCTTACGTTTC..................... 23 3 3 1.00 3 0 3 0 0 0 0
...............ATGGAACTTCGAAAGTGGTCTGC..................................................................................................................................................................................................................... 23 0 11 0.55 6 6 0 0 0 0 0
.................GGAACTTCGAAAGTGGTCTGCGA................................................................................................................................................................................................................... 23 0 11 0.55 6 6 0 0 0 0 0
...............................................TTCTCTGCTAAAAGACATACC....................................................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0
......TCAGCAAGAATGGAACTTCGAAAGTGG.......................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................TCAAGACTATTTTGGGTTCAAGG..................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0
...............................................TTCTCTGCTAAAAGACATACCTCT.................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
..................................................TCTGCTAAAAGACATACCTCTCGATC............................................................................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0
.TACGATCAGCAAGAATGGAACTTCGA................................................................................................................................................................................................................................ 26 0 2 0.50 1 0 1 0 0 0 0
...............ATGGAACTTCGAAAGTGGTCTGCGA................................................................................................................................................................................................................... 25 0 11 0.45 5 3 2 0 0 0 0
...............ATGGAACTTCGAAAGTGGTCTGCG.................................................................................................................................................................................................................... 24 0 11 0.45 5 1 3 0 1 0 0
............................................................................................................................................................................................................CCCGACTGTACGACCCCTTAGGTT....................... 24 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................................................................ACAGTCGCCCGACTGTACGACCCCT............................. 25 0 3 0.33 1 1 0 0 0 0 0
...............ATGGAACTTCGAAAGTGGTCT....................................................................................................................................................................................................................... 21 0 11 0.27 3 3 0 0 0 0 0
.............................................................................................................................................................................................................................TTAGGTTTCATCACGCCCTGTGTCA..... 25 0 10 0.20 2 2 0 0 0 0 0
.................GGAACTTCGAAAGTGGTCTGCGAAT................................................................................................................................................................................................................. 25 0 11 0.18 2 2 0 0 0 0 0
...............ATGGAACTTCGAAAGTGGTCTG...................................................................................................................................................................................................................... 22 0 11 0.18 2 2 0 0 0 0 0
.................GGAACTTCGAAAGTGGTCTGCGAA.................................................................................................................................................................................................................. 24 0 11 0.18 2 2 0 0 0 0 0
...............ATGGAACTTCGAAAGTGGTCTGCGAA.................................................................................................................................................................................................................. 26 0 11 0.18 2 1 1 0 0 0 0
...............................................................................................................................TCAAGACTATTTTGGGTTCAAG...................................................................................................... 22 0 11 0.18 2 2 0 0 0 0 0
.................GGAACTTCGAAAGTGGTCTGCG.................................................................................................................................................................................................................... 22 0 11 0.18 2 2 0 0 0 0 0
................TGGAACTTCGAAAGTGGTCTGCGA................................................................................................................................................................................................................... 24 0 11 0.18 2 2 0 0 0 0 0
.........................................................................................................................................................................................................TCGCCCGACTGTACGACC................................ 18 0 11 0.18 2 2 0 0 0 0 0
.............................................................................................................................................................TGAAATCAGTCACGCACATACTA....................................................................... 23 0 9 0.11 1 1 0 0 0 0 0
.............................................................................................................................................................TGAAATCAGTCACGCACATACTAAACG................................................................... 27 0 9 0.11 1 1 0 0 0 0 0
.......................................................................................................................................................AAATTTTGAAATCAGTCACGC............................................................................... 21 0 9 0.11 1 0 0 0 0 1 0
.............................................................................................................................................................................................................................TTAGGTTTCATCACGCCCTGT......... 21 0 10 0.10 1 1 0 0 0 0 0
........................................................................................................................................ATTTGGGTTCGAGGTAAA................................................................................................. 18 2 10 0.10 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................TAGGTTTCATCACGCCCTGTGT....... 22 0 10 0.10 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................AGGTTTCATCACGCCCTGTGTCA..... 23 0 10 0.10 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TTAGGTTTCATCACGCCCTGTGTC...... 24 0 10 0.10 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................TAGGTTTCATCACGCCCTGTGTC...... 23 0 10 0.10 1 1 0 0 0 0 0
.................GGAACTTCGAAAGTGGTCTGCGAATG................................................................................................................................................................................................................ 26 0 10 0.10 1 1 0 0 0 0 0
.....................CTTCGAAAGTGGTCTGCGAATGA............................................................................................................................................................................................................... 23 0 11 0.09 1 1 0 0 0 0 0
...............ATGGAACTTCGAAAGTGGT......................................................................................................................................................................................................................... 19 0 11 0.09 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TTCATCACGCCCTGTGTCATGACC 24 0 11 0.09 1 1 0 0 0 0 0
.................GGAACTTCGAAAGTGGTCTGCGAAA................................................................................................................................................................................................................. 25 1 11 0.09 1 1 0 0 0 0 0
..............AATGGAACTTCGAAAGTGGTC........................................................................................................................................................................................................................ 21 0 11 0.09 1 0 0 0 1 0 0
..................GAACTTCGAAAGTGGTCTGC..................................................................................................................................................................................................................... 20 0 11 0.09 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GTTTCATCACGCCCTGTGTC...... 20 0 11 0.09 1 1 0 0 0 0 0
.............GAATGGAACTTCGAAAGTGGTCTG...................................................................................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TTCATTACGCCCTGTATCATGACA 24 3 11 0.09 1 1 0 0 0 0 0
..............GATGGAACTTCGAAAGTGGTCTG...................................................................................................................................................................................................................... 23 1 11 0.09 1 1 0 0 0 0 0
..................GAACTTCGAAAGTGGTCTGCGA................................................................................................................................................................................................................... 22 0 11 0.09 1 1 0 0 0 0 0
.......................................................................................................................................................AAATTTTGTAATCTGACACGC............................................................................... 21 3 12 0.08 1 0 0 0 0 0 1
................................................................................................................................................................................................TTTCTACAGTCCGACGAC......................................... 18 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AATGCTAGTCGTTCTTACCTTGAAGCTTTCACCAGACGCTTACTGCGAAGAGACGATTTTCTGTATGGAGAGCTAGTAAACAGAGCTTTCTGTAATAGTCTCAAACTCATGGTTTGGAATCCAGTGTAGTTCTGATAAAACCCAAGTTCCATTTAAAACTTTAGTCAGTGCGTGTATGATTTGCAAGTAATGAAAGATGTCAGCGGGCTGACATGCTGGGGAATCCAAAGTAGTGCGGGACACAGTACTGG
*****************************************************************************************************(((................(((((......((((.((..(((.(((..((.(((((.....)))))))))))))...)).))))....)))))....)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 M059
embryo
 GSM444067
head
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 M062
head
................................CAGACGCTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 25 0 9 5.44 49 32 0 14 0 1 0 2 0 0
.................................................................................................................TTGGAATCCAGTGTAGTTCTGATA.................................................................................................................. 24 0 2 3.50 7 7 0 0 0 0 0 0 0 0
...............................CCAGACGCTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 26 0 9 2.44 22 9 0 13 0 0 0 0 0 0
..TGCTAGTCGTTCTTACCTTGAAGCT................................................................................................................................................................................................................................ 25 0 2 2.00 4 4 0 0 0 0 0 0 0 0
................................................................................................................................................................TTAGTCAGTGCGTGTATGATTTGCA.................................................................. 25 0 9 1.78 16 3 12 0 0 1 0 0 0 0
...............................................................................................................................AGTTCTGATAAAACCCAAGTTCCAT................................................................................................... 25 0 2 1.50 3 0 3 0 0 0 0 0 0 0
................................CAGACGCTTACTGCGAAGAGACGATT................................................................................................................................................................................................. 26 0 2 1.50 3 0 0 2 0 0 1 0 0 0
...GCTAGTCGTTCTTACCTTGAAGCT................................................................................................................................................................................................................................ 24 0 2 1.50 3 3 0 0 0 0 0 0 0 0
AATGCTAGTCGTTCTTACCTTGAAGCT................................................................................................................................................................................................................................ 27 0 2 1.50 3 3 0 0 0 0 0 0 0 0
.ATGCTAGTCGTTCTTACCTTGAAG.................................................................................................................................................................................................................................. 24 0 2 1.50 3 2 0 0 0 1 0 0 0 0
AATGCTAGTCGTTCTTACCTTGAAG.................................................................................................................................................................................................................................. 25 0 2 1.50 3 3 0 0 0 0 0 0 0 0
...................................................................................................................GGAATCCAGTGTAGTTCTGATA.................................................................................................................. 22 0 2 1.50 3 2 0 0 0 0 0 1 0 0
.................................AGACGCTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 24 0 10 1.40 14 9 2 1 0 1 0 1 0 0
...GCTAGTCGTTCTTACCTTGAAG.................................................................................................................................................................................................................................. 22 0 2 1.00 2 2 0 0 0 0 0 0 0 0
................................................................................................AGTCTCAAACTCATGGTTTGGAAT................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCAAAGTAGTGCGGGACACAGTACT.. 25 0 11 1.00 11 10 0 0 0 1 0 0 0 0
....CTAGTCGTTCTTACCTTGAAGCT................................................................................................................................................................................................................................ 23 0 2 1.00 2 1 1 0 0 0 0 0 0 0
.................................................................................................................TTGGAATCCAGTGTAGTTCTGATAA................................................................................................................. 25 0 2 1.00 2 1 1 0 0 0 0 0 0 0
.......................................................................................TTCTGTAATAGTCTCAAACTCATGGT.......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................TTTCTGTAATAGTCTCAAACTCATGGT.......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................CTGTATGGAGAGCTAGTAAA........................................................................................................................................................................... 20 0 2 1.00 2 0 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................................GCTGACATGCTGGGGAATCCAAAGT.................... 25 0 3 0.67 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GGGCTGATTTGCTGGGGAATGCAAAGT.................... 27 3 3 0.67 2 0 2 0 0 0 0 0 0 0
.............................CACCAGACGCTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 28 0 9 0.67 6 4 2 0 0 0 0 0 0 0
.........................................ACCGCGAAGGGATGATTTT............................................................................................................................................................................................... 19 3 16 0.63 10 10 0 0 0 0 0 0 0 0
.ATGCTAGTCGTTCTTACCTTGAAGC................................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................GATTTTCTGTATGGAGAGCTAGTAA............................................................................................................................................................................ 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0
...GCTAGTCGTTCTTACCTTGAAGGT................................................................................................................................................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CGTGTATGATTTGCAAGTAATGAAA........................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................CCCAAGTTCCATTTAAAACTTTAGTC..................................................................................... 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0
.........................................................TTTCTGTATGGAGAGCTAGTAAACA......................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 1 0
..TGCTAGTCGTTCTTACCTTGAAG.................................................................................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGGAATGCAAAGTAATGCGGGACAT........ 25 3 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................ACAGCGAAGAGACGAGTTTCTGA........................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................AGTGTAGTTCTGATAAAACCCAAGT........................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................CAGCGAAGAGACGAGTTTCTGAATG........................................................................................................................................................................................ 25 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.ATGCTAGTCGTTCTTACCTTGAAGCT................................................................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
AATGCTAGTCGTTCTTACCTTGAA................................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................CCAGACGCTTACTGCGAAGAGACGATT................................................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................CACCAGACGCTTACTGCGAAGAGACGATT................................................................................................................................................................................................. 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................CAGACGCTTACTGCGAAGAGACGATTTT............................................................................................................................................................................................... 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0
..................................................................................................................TGGAATCCAGTGTAGTTCTGATA.................................................................................................................. 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
AATGCTAGTCGTTCTTACCTTGAAGC................................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTAATGAAAGATGTCAGCGGGC........................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................................ATGGTTTGGAATCCAGTGTAGTT........................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................CGAAGAGACGAGTTTCTGAATGTA...................................................................................................................................................................................... 24 3 2 0.50 1 0 0 0 0 1 0 0 0 0
...GCTAGTCGTTCTTACCTTGAAGC................................................................................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................AACTTTAGTCAGTGCGTGTATGATTT..................................................................... 26 0 9 0.44 4 0 1 3 0 0 0 0 0 0
..................................................................................................................................................................................................................ACATGCTGGGGAATCCAAAGTA................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGCTGACATGCTGGGGAATCCAAAGTA................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGCTGACATGCTGGGGAATCCAAAGT.................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCAGCGCGTGTATGATTTGCAAGTAAT............................................................ 27 1 3 0.33 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................CGGGCTGATTTGCTGGGGAATGCAAAGT.................... 28 3 3 0.33 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAGCGGGCTGACATGCTGGGGAAT........................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................AGTCAGTGCGTGTATGATTTGCA.................................................................. 23 0 9 0.33 3 0 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTGACATGCTGGGGAATCCAAAGT.................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAGGGGGCTGACATGCTGGGGAAT........................... 25 1 3 0.33 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGGGCTGACATGCTGGGGAAT........................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTGGGGAATGCAAAGTAATGC............... 21 2 3 0.33 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................GCTGACATGCTGGGGAATCCAAAG..................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CGGGCTGACATGCTGGGGAATCCAAAGT.................... 28 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GGCTGATTTGCTGGGGAATGCAAAGT.................... 26 3 3 0.33 1 1 0 0 0 0 0 0 0 0
...............................CCAGACGCTTACTGCGAAGAGACGA................................................................................................................................................................................................... 25 0 9 0.33 3 3 0 0 0 0 0 0 0 0
..............................ACCAGACGCTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 27 0 9 0.33 3 1 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTAGTGCGGGACACAGTACT.. 20 0 11 0.27 3 3 0 0 0 0 0 0 0 0
........................................................................................................................................................TTAAAACTTTAGTCAGTGCGTGTATGATT...................................................................... 29 0 8 0.25 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................AACTTTAGTCAGTGCGTGTATGATT...................................................................... 25 0 9 0.22 2 0 1 1 0 0 0 0 0 0
...............................CCAGACGTTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 26 1 9 0.22 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACTTTAGTCAGTGCGTGTATGATT...................................................................... 26 0 9 0.22 2 0 1 1 0 0 0 0 0 0
....................................................................................................................................................................TCAGTGCGTGTATGATTTGCA.................................................................. 21 0 9 0.22 2 2 0 0 0 0 0 0 0 0
.................................AGACGCTTACTGAGAAGAGACGAT.................................................................................................................................................................................................. 24 1 10 0.20 2 2 0 0 0 0 0 0 0 0
.................................AGACACTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 24 1 10 0.20 2 2 0 0 0 0 0 0 0 0
..................................GACGCTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 23 0 10 0.20 2 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................AATCCAAAGTAGTGCGGGACACAG...... 24 0 10 0.20 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................GTGTAGTTCTGATAAAACCCAAGT........................................................................................................ 24 0 11 0.18 2 0 2 0 0 0 0 0 0 0
..............TTACCTTGAAGCTTTCACCAGACGCTT.................................................................................................................................................................................................................. 27 0 11 0.18 2 2 0 0 0 0 0 0 0 0
...............TACCTTGAAGCTTTCACCAGACGCT................................................................................................................................................................................................................... 25 0 11 0.18 2 2 0 0 0 0 0 0 0 0
............................................GCGAAGAGACGATATTCTGTATGGAG..................................................................................................................................................................................... 26 1 11 0.18 2 2 0 0 0 0 0 0 0 0
..............................................................GTGTGGCGCGCTAGTAAAC.......................................................................................................................................................................... 19 3 14 0.14 2 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................AAAACTTTAGTCAGTGCGTGTATGATT...................................................................... 27 0 8 0.13 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................AAAACTTTAGTCAGTGCGTGTATGATTT..................................................................... 28 0 8 0.13 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................TAAAACTTTAGTCAGTGCGTGTATGATTT..................................................................... 29 0 8 0.13 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTTAAAACTTTAGTCAGTGCGTGT............................................................................ 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAAAACTTTAGTCAGTGCGTGTATGATT...................................................................... 28 0 8 0.13 1 1 0 0 0 0 0 0 0 0
..............................ACCAGACGTTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 27 1 9 0.11 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TTAGTCAGTGCGTGTATGATTTGCAAG................................................................ 27 0 9 0.11 1 0 1 0 0 0 0 0 0 0
................................CAGACGCTTACTGAGAAGAGACGAT.................................................................................................................................................................................................. 25 1 9 0.11 1 1 0 0 0 0 0 0 0 0
................................CAGACGTTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 25 1 9 0.11 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAACTTTAGTCAGTGCGTGTATGATTT..................................................................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0 0
...............................ACAGACGCTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 26 1 9 0.11 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTTTAGTCAGTGCGTGTATGAT....................................................................... 22 0 9 0.11 1 1 0 0 0 0 0 0 0 0
................................CAGACGCTTACTGCGAAGAGACGA................................................................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................AGTCAGTGCGTGTATGATTTGCAA................................................................. 24 0 9 0.11 1 1 0 0 0 0 0 0 0 0
............................TCACCAGACGTTTACTGCGAAGAGACGAT.................................................................................................................................................................................................. 29 1 9 0.11 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TAGTCAGTGCGTGTATTATTTGCA.................................................................. 24 1 9 0.11 1 1 0 0 0 0 0 0 0 0
................................CAGACGCTTACTGCGAAGAGATGAT.................................................................................................................................................................................................. 25 1 9 0.11 1 1 0 0 0 0 0 0 0 0
...............................CCAGACGCTTACTGCGAAGATACGAT.................................................................................................................................................................................................. 26 1 9 0.11 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................AATCCAAAGTAGTGCGGGACACAGT..... 25 0 10 0.10 1 0 1 0 0 0 0 0 0 0
.................................AGACGCTTACTGCGAAGAGACGA................................................................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TTAGTCAGTGCGTGTATGATTT..................................................................... 22 0 10 0.10 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCCAAAGTAGTGCGGGACACAGT..... 23 0 10 0.10 1 1 0 0 0 0 0 0 0 0
...............TACCTTGAAGCTTTCACCAGACGCTTACT............................................................................................................................................................................................................... 29 0 10 0.10 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................AGTCAGTGCGGGTATGATTTGCA.................................................................. 23 1 10 0.10 1 0 1 0 0 0 0 0 0 0
.................................AGACGCTTACTGCGAAGAGACGATA................................................................................................................................................................................................. 25 1 10 0.10 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCCAAAGTAGTGCGGGACACAGTACT.. 26 0 10 0.10 1 1 0 0 0 0 0 0 0 0
.................................AGACGCTTACCGCGAAGAGACGATA................................................................................................................................................................................................. 25 2 10 0.10 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTCAGTGCGTGTATGATTTG.................................................................... 20 0 10 0.10 1 0 0 0 1 0 0 0 0 0
.....................................GCTTACTGAGAAGAGACGAT.................................................................................................................................................................................................. 20 1 10 0.10 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TTGAAACTTTAGTCAGTGCGTGT............................................................................ 23 1 10 0.10 1 1 0 0 0 0 0 0 0 0
.................CCTTGAAGCTTTCACCAGACGCTT.................................................................................................................................................................................................................. 24 0 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................GCGTAGTTCTGATAAAACCCAAGT........................................................................................................ 24 1 11 0.09 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGTAGTGCGGGACACAGTACT.. 21 0 11 0.09 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACCAAAGTAGTGCGGGACACAGTACT.. 26 1 11 0.09 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCAAAGTAGTGCGGGACACAGTACTG. 26 0 11 0.09 1 1 0 0 0 0 0 0 0 0
................................................................................................................................GTTCTGATAAAACCCAAGT........................................................................................................ 19 0 11 0.09 1 1 0 0 0 0 0 0 0 0
..............TTACCTTGAAGCTTTCACCAGACGCT................................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTTCGGGAATACAAAGTAG.................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_231:19753-20003 - dps_1884 TTACG---------------------ATCAGCAAGAATGGAACTTCGAAAGTGGTCTGCGAATGACGCT--TCTCTGCTAAAAGACATACCTCTC--GATCATTTGTCTCGAAAGACATTATCAGAGTTTGAGTACCAA-------------------------ACCTTAGGTCACATCAAGACTATTTTGGGTTCAAG-GTAAATTTTGAAATCAG--------T-CA-CGCACATACTAAACGTTCATTACTTTCTACAGTCGCCCGACTGTACGACCCCTTAGGTTTCATCACGCCCTGTGTCATGACC------
droPer2 scaffold_71:34132-34382 - TTACG---------------------ATCAGCAAGAATGGAACTTCGAAAGTGGTCTGCGAATGACGCT--TCTCTGCTAAAAGACATACCTCTC--GATCATTTGTCTCGAAAGACATTATTAGAGTTTGAGTACCAA-------------------------ACCTTAGGTCACATCAAGACTATTTTGGGTTTAAG-GTAAATTTTGAAATCAG--------T-CA-CGCACATACTAAACGTTCATTACTTTCTACAGTCGCCCGACTGTACGACCCCTTAGGTTTCATCACGCCCTGTGTCATGACC------
droWil2 scf2_1100000004972:15527-15804 - CTTCG---------------------TAGTGGTACATTCGAACTACGGAAGTGGTCGAGTAATTGCCCA--AAGCTATTAGAGAACATACCAGTT--GAGCATCGAGAATC-AAGGTATTGTTACACATGGAAGGTAATGAAACTATTCGCACTTTAGGTCTATACTAGAGTCCCAAAGAAGATGAGTTCCGTTTTGCT-TTGCACGTCGTTCCATC------AATGAG-CTCACCAACAAAGAGGGCAATACTATCAGCAATTGCACGACGGTTTGATCCCATGGGATGGCTTAGTCCGATAATGATTACT------
droVir3 scaffold_12958:2389190-2389460 + TTACG---------------------CAGTGGCACATTTGAGTTGAGAAAGTGGGCAAGTAATTGCCCA--ACATTATTAGAAAAGATACCTATC--GAATTTCGAGAAACGAAGGGATTGTTG-CCCTTGATG--GCGGACACAATTCGTACGCTGGGTATACATTAGAGTG-----GAGGATGAATTTCGATTTCAT-TTAAATTTTGATTTATC------AGTAGA-CTTACCGATGAAACGGTCAATACTGTAGACAGTTGCGAGGTTATTCGATCCTATGGGATGGCTGAGTCCGGTTGTTGTAACC------
droMoj3 scaffold_6473:16907988-16908286 + ATCGCCGAACTCACAGAAGCTCTGTAGAGTGCGGGGTTTCCCTTAAGGAAGTGGACATCCAATTCCATG--GATTGTTTGAAGGCTATCCCAAG---AGTCATCGGCTGTGCGAGGACTTCTTAGAGCTTGAAGATTCCAGCACGGCAAAGACCCTAGGCCTACGTTGGCAAGAGCATGCCGATCTTTTCTTTTTTTCG-CCCCCTGACATTCCTCT------CCA-GGAGTCCTACACAAAAAGGTCGGTCCTTTCACAGATCGCCAAGTTGTTCGACCCTGCAGGGTGGCTGGCACCCTTTGTCATTCGT------
droAna3 scaffold_13230:1336936-1337187 + CTAAA---------------------ATCGGCAGGAATTGTATTCAGGAAATGGGCACTTAATCATCCACAGATCTTCTTTACTGCATTTCTGAC--CAGCACTTGGCTCAAATAAGAAATGTAGAAGTGAATTACTAGGAGACTATTAA---------------------CTCACACGTGGACTCCTACAGCTTTAAT-GTTCAATTTGACATCCC--------G-CC-CTCCTTTACTAAAAGTTCGTTTCTTTAAGAATTCGCTCGCCTCTAAGATCCCTTAGGCTTTATAGTCCCCGCTGCTG-----------
droBip1 scf7180000391519:68310-68552 - CTAAA---------------------ATCGATAGGAATGGAATTCAGGAAATGGC-ATCAAATCATTCA--AATATCTTATCCGGAATTCCTGAC--CAGCACCTGGCTCAAAAAAGAAATGTAGAAGTA-----------------------------TCTCGATTAGAGCTCACAAGAGAATTTTTATAGCTTTAAG-GTTCGATTTGACCTTTA--------A-GC-CTCCTTTACTAAACGTTCCTTTCTTTCAGTAGTCGCTCGCCTCTATGATCCCTTAGGCTTTATAGTTCCTGTCA---CTACT------
droKik1 scf7180000301138:19207-19479 - ATAAA---------------------ATCCGCTTGCATGGAGTTGCGGAAATGGTCCAGCAACGAAGAG--AGCCTTTTGCAATCGATTCCGCCA--GAGCATCAATGAAGTCGGACACCTCTGAACTGGGACACTGCGGATCCGATCAAGGTGTTAGGAATGTATTGGCTCCCCAATAAGGACTGCTTCAAATTTCAG-GTCAATTTTGAGATACC--------A-CC-TAGTTTCACCAAAAGGACGATCCTGTCGAGCATAGCGAGGCTGTTCGACCCACTAGGTTTCATCGCGCCAGTCATCA---TC------
droFic1 scf7180000453355:12074-12348 - CTTCA---------------------ATCCGCTGGCATGTGTCTCAGGAAATGGGCATCTAATCATCCT--GACTTGCTGGTTAACATTGCGCAA--GAACATATGTCGAATTCAACAATTTTAGAAGTCGACAATCATGATTCAATA-AAACACTTGGTTTGTATTGGCATCCTAAAAGAGATGTTTATGGCTTTCAT-ATAAAATTCAAAATTAG--------T-CA-AGAATTTACTAAACGAGCATTACTTTCCACAGTGGCCCGGTTGTACGATCCATTAGGATTTATTGTGCCAATTATCACAACT------
droEle1 scf7180000490094:14308-14572 + CTTCA---------------------CTCAGTCGGAGTGGAGCTAAGAAAATGGTCTGCAAATAACACA--TCAT-TTTGCTAGGAATCCC-GACCCTCTCATTTATCCAATAGGACACTTTTGGACTTCAACCATCAGAAGCCTATCAAGACGTTAGGGCTATATTGGCACCCTCATCGCGATTCCAACGGCTTTAAA-ATAAAAATTGAAA---------------------TTTACTAAACGTTCGGTTTCTTCCACAGTGGCCCGTCTCTACAACCGCTTAGGTTTCATCGCTCCGATTGTCACCACA------
droRho1 scf7180000770642:6305-6595 + CTGCT---------------------TTCAGCCGGAATTGAATTCAGGAAGTGGTCTGCCAATCATCAA--TCGCCTCTGAAAGACATTCCCTCG--GAACATCTATCTAACTCTAGCATTTTGGAATTTGATAATCATGATACTATCAAAGCCTTAGGCCTCTATTGGCATCCCAATCGTGATTATTTTGGCTTTAAAAATAAAATTCAAAATAAATCCTATGCT-AT-CCTATTAACCAAACGATCTCTTCTCTCCACAGTCGCTCAATTATATGATCCTCTAGGGCTTATAACTCCAGTTATCACAACCGCTAAA
droBia1 scf7180000302298:3904-4171 + CTGCA---------------------ATCAGCAGGCATGGAGCTCAAGAAGTGGGCATCCAACCATCCA--GATATCTGAGAAAGCATCCCAACT--ACAGATCTCTCTAACAGTAGCATTTTTGAGATAGACAATAAGGACTCCATTAAAACTTTAGGGTTGTATTGGCATCCAAACAAAGATGGTTTTGGTTTTAAT-CTTAATTTTTCTCTCAA--------T-CC-TATATTCACCAAACG-----TTCTATCTACAGTAGCACGCTTATTCGATCCGTTGGGATACCTGGCACCAGTGATCC---TG------
droTak1 scf7180000413081:23378-23653 + CTTCA---------------------ATCAGCTGGTATGGAGCTTCGAAAATGGGCAGCAAATCATCCC--AGTCCTTTGAACTCTATTCCTCCT--GAGCACATGTCCAATTCCAAAATTTTGGAAATCGTAAACCAAGAGTCCATTAGAACTTTAGGGCTATATTGGCACCCCAAAAAAGACTTTTATGGTTTCAAA-ATAAAATTTACAATTGA--------C-AA-AATTTTCACTAAGCGATCAATTCTTTCTACAGTTTCACGTCCGTACGATCCTTTAGGTTTCGTTGCTCCAGTCATAATCATC------
droEug1 scf7180000405529:5645-5890 - ATAAA---------------------ATCCGCGTGCATGGAGTTGCGGAAATGGACTAGCAACGAGTCC--AGTCTCTTGCTCTCGATTCCTGTG--GAGCATCAGTGCAGCAGGACTCCTTTAAACTGT---------------------------ATGATGTATTGGCTCCCGAATAAGGACTGTTTAAAATTTCAG-GTCAATTTTGAGATTCC--------A-GC-TAGGTTCACCAAACGTATGATTCTATGGAGCATAGCTAGGCTGTACGATCCATTGGGTCGCATCGCACCAGTCATCA---TC------
dm3 chr2L:6880144-6880419 + TTAAA---------------------ATCCTCTGGCATGGAGCTACGAAAATGGGCTAGTAATGACCAG--GATCTGATGGCAACGATACCTCTC--GAGCATCGATGCAAGCAGACATCCCTCAGTTGGGACAATGCGGACACCATCAAAACACTGGGTATGTACTGGTTGCCCAAGCAAGATTGCTTCACTTATAAA-TTACTAGCAAATACTCC--------A-GC-CGGTATAACAAAACGAGAAATCCTATCGACCATAGCACGTTTATTTGATCCTCTTGGATTAATCGCTCCAGTTGTAATTTCA------
droSim2 3l:22623514-22623578 - CTCAA---------------------GTCAGTTGGCATGGAGCTCCGGAAATGGTCAGCAAACCACACA--GCGCTTCTAAGTCACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_117:24249-24523 + TTAAA---------------------ATCCCCTGGCATGGAGCTACGAAAATGGGCTAGTAATGACCAG--GATCTGATGGCAACGATACCTCAC--GAGCATCGATGCAAGCAGACATCTCTCAGTTGGGACAATGCGGACACCATCAAAACACTGGGTATGTACAGGTTGCCCAAG-CAGATTGCTTCACTTATAAA-TTACAAGCAATTACTCC--------A-GC-CGGTATAACAAAACGGGAAATCCTATCGACCATAGCACGTTTATTTGATCCTCTTGGATTAATCGCTCCAGTTGTATTGAAA------
droYak3 v2_chrUn_3705:8987-9254 - CTCAG---------------------TTTTGTTGGCATGGAACTCCGGAAATGGGAATAGAACCACCCA--GATCTACTTCGTGATATTCCCGAA--GGAGATTTATGCAACAACTCTATCCTTGAAATAGACAACAACGACGCCATTAAAAC--AAGGATTGTACTGGCAA--------CGACGACTACGGATTCAAA-ATAAACTTCGCAAGCAA--------T-CC-CACAATGACTAAAATATCGCTTTTATCCACCGTAGCACGTCTTTTCGACCCATTAAGTTTTTT-GCACCCATCATCG---TCGTGTCT
droEre2 scaffold_4929:21996684-21996947 - ATGGA---------------------GAAGGCCGGCATGCATCTGCGAAAATGGGTTGCAAATGACGAA--CGTATTTTAGCCGACATTCAGGAC--GACGGT----GCTACGGAGAAAATCTG--CATTGAGGAGAATGAATCGATCAAAACCTTAGGACTCCAATGGGATCCGAAGAAGGATACATTTACGTTTTCG-GCAGAAAAACCAACGCT--------A-AC-ACGCATAACAAAGCGGTTAGTGTTATCACAGTTGTCCAGAATTTTCGACCCACTAGGATGGTTGGCACCTGTAA------CG------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTACG---------------------ATCAGCAAGAATGGAACTTCGAAAGTGGTCTGCGAATGACGCT--TCTCTGCTAAAAGACATACCTCTC--GATCATTTGTCTCGAAAGACATTATCAGAGTTTGAGTACCAA-------------------------ACCTTAGGTCACATCAAGACTATTTTGGGTTCAAG-GTAAATTTTGAAATCAG--------T-CA-CGCACATACTAAACGTTCATTACTTTCTACAGTCGCCCGACTGTACGACCCCTTAGGTTTCATCACGCCCTGTGTCATGACC------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................ATGGAACTTCGAAAGTGGTCTGC...................................................................................................................................................................................................................................................................23110.5560600000000
......................................GGAACTTCGAAAGTGGTCTGCGA.................................................................................................................................................................................................................................................................23110.5560600000000
....................................................................T--TCTCTGCTAAAAGACATACC...................................................................................................................................................................................................................................2120.5010000000100
...........................TCAGCAAGAATGGAACTTCGAAAGTGG........................................................................................................................................................................................................................................................................2720.5010100000000
.................................................................................................................................................................................TCAAGACTATTTTGGGTTCAAG-G.....................................................................................................................2320.5010100000000
....................................................................T--TCTCTGCTAAAAGACATACCTCT................................................................................................................................................................................................................................2420.5010100000000
.........................................................................TCTGCTAAAAGACATACCTCTC--GATC.........................................................................................................................................................................................................................2620.5010000100000
.TACG---------------------ATCAGCAAGAATGGAACTTCGA..............................................................................................................................................................................................................................................................................2620.5010000000100
....................................ATGGAACTTCGAAAGTGGTCTGCGA.................................................................................................................................................................................................................................................................25110.4550300000200
....................................ATGGAACTTCGAAAGTGGTCTGCG..................................................................................................................................................................................................................................................................24110.4550100000310
.........................................................................................................................................................................................................................................................................CCCGACTGTACGACCCCTTAGGTT.............................2430.3310100000000
..................................................................................................................................................................................................................................................................ACAGTCGCCCGACTGTACGACCCCT...................................2530.3310100000000
....................................ATGGAACTTCGAAAGTGGTCT.....................................................................................................................................................................................................................................................................21110.2730300000000
..........................................................................................................................................................................................................................................................................................TTAGGTTTCATCACGCCCTGTGTCA...........25100.2020200000000
......................................GGAACTTCGAAAGTGGTCTGCGAAT...............................................................................................................................................................................................................................................................25110.1820200000000
....................................ATGGAACTTCGAAAGTGGTCTG....................................................................................................................................................................................................................................................................22110.1820200000000
......................................GGAACTTCGAAAGTGGTCTGCGAA................................................................................................................................................................................................................................................................24110.1820200000000
....................................ATGGAACTTCGAAAGTGGTCTGCGAA................................................................................................................................................................................................................................................................26110.1820100000100
.................................................................................................................................................................................TCAAGACTATTTTGGGTTCAAG-......................................................................................................................22110.1820200000000
......................................GGAACTTCGAAAGTGGTCTGCG..................................................................................................................................................................................................................................................................22110.1820200000000
.....................................TGGAACTTCGAAAGTGGTCTGCGA.................................................................................................................................................................................................................................................................24110.1820200000000
......................................................................................................................................................................................................................................................................TCGCCCGACTGTACGACC......................................18110.1820200000000
................................................................................................................................................................................................................TGAAATCAG--------T-CA-CGCACATACTA.............................................................................2390.1110100000000
................................................................................................................................................................................................................TGAAATCAG--------T-CA-CGCACATACTAAACG.........................................................................2790.1110100000000
..........................................................................................................................................................................................................AAATTTTGAAATCAG--------T-CA-CGC.....................................................................................2190.1110001000000
..........................................................................................................................................................................................................................................................................................TTAGGTTTCATCACGCCCTGT...............21100.1010100000000
...........................................................................................................................................................................................................................................................................................TAGGTTTCATCACGCCCTGTGT.............22100.1010100000000
............................................................................................................................................................................................................................................................................................AGGTTTCATCACGCCCTGTGTCA...........23100.1010100000000
..........................................................................................................................................................................................................................................................................................TTAGGTTTCATCACGCCCTGTGTC............24100.1010100000000
...........................................................................................................................................................................................................................................................................................TAGGTTTCATCACGCCCTGTGTC............23100.1010100000000
......................................GGAACTTCGAAAGTGGTCTGCGAATG..............................................................................................................................................................................................................................................................26100.1010100000000
..........................................CTTCGAAAGTGGTCTGCGAATGA.............................................................................................................................................................................................................................................................23110.0910100000000
....................................ATGGAACTTCGAAAGTGGT.......................................................................................................................................................................................................................................................................19110.0910100000000
................................................................................................................................................................................................................................................................................................TTCATCACGCCCTGTGTCATGACC------24110.0910100000000
......................................GGAACTTCGAAAGTGGTCTGCGAAA...............................................................................................................................................................................................................................................................25110.0910100000000
...................................AATGGAACTTCGAAAGTGGTC......................................................................................................................................................................................................................................................................21110.0910000000010
.......................................GAACTTCGAAAGTGGTCTGC...................................................................................................................................................................................................................................................................20110.0910100000000
..............................................................................................................................................................................................................................................................................................GTTTCATCACGCCCTGTGTC............20110.0910100000000
..................................GAATGGAACTTCGAAAGTGGTCTG....................................................................................................................................................................................................................................................................24110.0910100000000
.......................................GAACTTCGAAAGTGGTCTGCGA.................................................................................................................................................................................................................................................................22110.0910100000000
droPer2
TTACG---------------------ATCAGCAAGAATGGAACTTCGAAAGTGGTCTGCGAATGACGCT--TCTCTGCTAAAAGACATACCTCTC--GATCATTTGTCTCGAAAGACATTATTAGAGTTTGAGTACCAA-------------------------ACCTTAGGTCACATCAAGACTATTTTGGGTTTAAG-GTAAATTTTGAAATCAG--------T-CA-CGCACATACTAAACGTTCATTACTTTCTACAGTCGCCCGACTGTACGACCCCTTAGGTTTCATCACGCCCTGTGTCATGACC------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................GAAAGTGGTCTGCGAATGACG...........................................................................................................................................................................................................................................................21200.051000001
droWil2
CTTCG---------------------TAGTGGTACATTCGAACTACGGAAGTGGTCGAGTAATTGCCCA--AAGCTATTAGAGAACATACCAGTT--GAGCATCGAGAATC-AAGGTATTGTTACACATGGAAGGTAATGAAACTATTCGCACTTTAGGTCTATACTAGAGTCCCAAAGAAGATGAGTTCCGTTTTGCT-TTGCACGTCGTTCCATC------AATGAG-CTCACCAACAAAGAGGGCAATACTATCAGCAATTGCACGACGGTTTGATCCCATGGGATGGCTTAGTCCGATAATGATTACT------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................AATGAG-CTCACCAACAAAGAG.........................................................................21180.06101000
...............................GTACATTCGAACTACGGAAGTGG........................................................................................................................................................................................................................................................................23200.05101000
........................................................................AGCTATTAGAGAACATACCAGTT--G............................................................................................................................................................................................................................24200.05100010
........................................................................................................................................................................................................................................................AATACTATCAGCAATTGCACGAC...............................................23200.05101000
...................................................................................AACATACCAGTT--GAGCATCGA....................................................................................................................................................................................................................21200.05100001
..........................................................................CTATTAGAGAACATACCAGTT--GAGCA........................................................................................................................................................................................................................26200.05100010
......................................................................................................................................................................................................................................................................................TCCCATGGGATGGCTTAGTCCGA.................23200.05101000
..........................................................................CTATTAGAGAACATACCAGTT--GAGCAT.......................................................................................................................................................................................................................27200.05101000
.........................................................................GCTATTAGAGAACATACCAGTT--G............................................................................................................................................................................................................................23200.05101000
..........................................................................CTATTAGAGAACATACCAGTT--GAGC.........................................................................................................................................................................................................................25200.05101000
...................................................................CA--AAGCTATTAGAGAACATACCAGTT--G............................................................................................................................................................................................................................27200.05101000
droVir3
TTACG---------------------CAGTGGCACATTTGAGTTGAGAAAGTGGGCAAGTAATTGCCCA--ACATTATTAGAAAAGATACCTATC--GAATTTCGAGAAACGAAGGGATTGTTG-CCCTTGATG--GCGGACACAATTCGTACGCTGGGTATACATTAGAGTG-----GAGGATGAATTTCGATTTCAT-TTAAATTTTGATTTATC------AGTAGA-CTTACCGATGAAACGGTCAATACTGTAGACAGTTGCGAGGTTATTCGATCCTATGGGATGGCTGAGTCCGGTTGTTGTAACC------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................TAGAAAAGATACCTATC--GAAT.........................................................................................................................................................................................................................2160.332000000000000000000000000020000000000000000000000000000000000000
droMoj3
ATCGCCGAACTCACAGAAGCTCTGTAGAGTGCGGGGTTTCCCTTAAGGAAGTGGACATCCAATTCCATG--GATTGTTTGAAGGCTATCCCAAG---AGTCATCGGCTGTGCGAGGACTTCTTAGAGCTTGAAGATTCCAGCACGGCAAAGACCCTAGGCCTACGTTGGCAAGAGCATGCCGATCTTTTCTTTTTTTCG-CCCCCTGACATTCCTCT------CCA-GGAGTCCTACACAAAAAGGTCGGTCCTTTCACAGATCGCCAAGTTGTTCGACCCTGCAGGGTGGCTGGCACCCTTTGTCATTCGT------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCCAGC................................................................................................................................................................................26411.504624000202
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCCAGCAC..............................................................................................................................................................................28410.754333000100
...................................................TGGACATCCAATTCCATG--GATTGT.................................................................................................................................................................................................................................................24105.20524070050
.........................................................................................................................................................CCTAGGCCTACGTTGGCAAGAGC..............................................................................................................................................2315.005220001
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGG...........................2484.25342240071
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCCAG.................................................................................................................................................................................2544.25171700000
..........TCACAGAAGCTCTGTAGAGTGCGGGG..........................................................................................................................................................................................................................................................................................2614.004300010
.........................................................................................................................................................CCTAGGCCTACGTTGGCAAGAGCATG...........................................................................................................................................2614.004300010
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAGG...............................2283.75302520030
..........TCACAGAAGCTCTGTAGAGTGCGG............................................................................................................................................................................................................................................................................................2413.003300000
.........................................................................................................................................................CCTAGGCCTACGTTGGCAAGAGCA.............................................................................................................................................2413.003300000
.........................................................................................................................................................CCTAGGCCTACGTTGGCAAGAGCATGC..........................................................................................................................................2713.003200010
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCCA..................................................................................................................................................................................2442.75111000010
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAGGG..............................2382.25181500030
........ACTCACAGAAGCTCTGTAGAGTGCGGGG..........................................................................................................................................................................................................................................................................................2812.002100001
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCC...................................................................................................................................................................................2342.008600020
....................................................................................................................................................AAGACCCTAGGCCTACGTTGGCAAGAGC..............................................................................................................................................2812.002010010
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCCAGCA...............................................................................................................................................................................2741.757700000
...................................................TGGACATCCAATTCCATG--GATTG..................................................................................................................................................................................................................................................23101.40141400000
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCTTT..............................................................2561.338300050
..................................................................................................................GGACTTCTTAGAGCTTGAAGATTCCAGC................................................................................................................................................................................2841.255500000
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAGGGTGG...........................2681.139900000
.....CGAACTCACAGAAGCTCTGTAGAGTGC..............................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................ACGGCAAAGACCCTAGGCCTACGTTG......................................................................................................................................................2621.002200000
.......................GTAGAGTGCGGGGTTTCCC....................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................CTATCCCAAG---AGTCATCGGCTGT................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................................CCTACGTTGGCAAGAGCATGCCGATCT....................................................................................................................................2711.001100000
.............CAGAAGCTCTGTAGAGTGCGGGG..........................................................................................................................................................................................................................................................................................2311.001000010
...........................................................................................................................................................TAGGCCTACGTTGGCAAGAGC..............................................................................................................................................2111.001000010
.........................................................................................................................................................CCTAGGCCTACGTTGGCAAGAGCAT............................................................................................................................................2511.001100000
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCTT...............................................................2461.006400020
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCTTTCAC...........................................................2831.003300000
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCC.................................................................2261.006500010
............................................AAGGAAGTGGACATCCAATTCCATG--G......................................................................................................................................................................................................................................................26111.0011700040
...................................................................................GCTATCCCAAG---AGTCATCGGCTGTGC..............................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................CCTACGTTGGCAAGAGCATGCCGATC.....................................................................................................................................2611.001000010
.......................................................................................................................................................ACCCTAGGCCTACGTTGGCAAGAGCT.............................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGGC..........................2581.008300050
.............................................................................TTGAAGGCTATCCCAAG---AGTCATCGG....................................................................................................................................................................................................................2611.001100000
.......................................................................GATTGTTTGAAGGCTATCCCAAG---AGTC.........................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................CTAGGCCTACGTTGGCAAGAGCATGC..........................................................................................................................................2611.001100000
........ACTCACAGAAGCTCTGTAGAGTG...............................................................................................................................................................................................................................................................................................2311.001100000
..CGCCGAACTCACAGAAGCTCTGTAG...................................................................................................................................................................................................................................................................................................2511.001000010
.....................................................................................TATCCCAAG---AGTCATCGGCTGTGCGA............................................................................................................................................................................................................2611.001100000
..............................................................................TGAAGGCTATCCCAAG---AGTCATCGGC...................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................CTACGTTGGCAAGAGCATGCCGA.......................................................................................................................................2311.001010000
.TCGCCGAACTCACAGAAGCTCTGTAG...................................................................................................................................................................................................................................................................................................2611.001100000
........ACTCACAGAAGCTCTGTAGAGTGCGG............................................................................................................................................................................................................................................................................................2611.001100000
.....CGAACTCACAGAAGCTCTGTAGA..................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTG............................2380.887520000
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAG................................2180.756600000
..................................................................................................................GGACTTCTTAGAGCTTGAAGATTC....................................................................................................................................................................................2440.753200010
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAGGGTGGC..........................2780.635400001
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGT.............................2280.635400001
.....................................................................................................................CTTCTTAGAGCTTGAAGATTCCAG.................................................................................................................................................................................2440.502200000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGG..............................2180.504300010
.........................................................................................................................................CCAGCACGGCAAAGACCCTAGG...............................................................................................................................................................2220.501010000
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCT................................................................2360.503100020
..........................................................................................................................TAGAGCTTGAAGATTCCAGCACGGCA..........................................................................................................................................................................2620.501100000
.....................................................................................................................CTTCTTAGAGCTTGAAGATTCCAGCAC..............................................................................................................................................................................2740.502200000
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCTTTC.............................................................2660.503200010
.....................................................................................................................CTTCTTAGAGCTTGAAGATTCCA..................................................................................................................................................................................2340.502200000
.................................................................................................................................................................................TGCCGATCTTTTCTTTTTTTCG-CCCC..................................................................................................................2620.501100000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGGCTG........................2780.504400000
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCCAA.................................................................................................................................................................................2540.502200000
...............................................................................................................................................CGGCAAAGACCCTAGGCCTACG.........................................................................................................................................................2220.501100000
...........................................................................................................................AGAGCTTGAAGATTCCAGCACGGCAA.........................................................................................................................................................................2620.501100000
................................................................................................................................................GGCAAAGACCCTAGGCCTACGTTG......................................................................................................................................................2420.501100000
...................................................TGGACATCCAATTCCATG--GATTGTTT...............................................................................................................................................................................................................................................2670.433200010
..........................................................................................................................................................................................................................................................................CAAGTTGTTCGACCCTGCAGG...............................2180.383200010
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAGGGTG............................2580.383300000
..........................................................................................................................................................................................................................................................................CAAGTTGTTCGACCCTGCAGGG..............................2280.383300000
............................................AAGGAAGTGGACATCCAATTCC............................................................................................................................................................................................................................................................22110.364200020
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCTTTCA............................................................2730.331100000
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCTTC..............................................................2560.332100010
...................................................TGGACATCCAATTCCATG--GATT...................................................................................................................................................................................................................................................22100.303110010
...................................................TGGACATCCAATTCCATG--GATTGTT................................................................................................................................................................................................................................................2570.292200000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGT...........................2480.252000020
....................................................................................................................ACTTCTTAGAGCTTGAAGATTCCAGA................................................................................................................................................................................2640.251100000
.....................................................................................................................CTTCTTAGAGCTTGAAGATT.....................................................................................................................................................................................2040.251100000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGG...............................2080.252200000
..........................................................................................................................................................................................................................................................................CAAGTTGTTCGACCCTGCAGGGTGG...........................2580.252200000
...........................................................................................................................................................................................................CCTGACATTCCTCT------CCA-GGAGTCCT...................................................................................2580.252000020
....................................................................................................................ACTTCTTAGAGCTTGAAGATT.....................................................................................................................................................................................2140.251100000
.......................................................................................................................................................................................................................................................CGGTCCTTTCACAGATCGCC...................................................2080.252200000
............................................................................................................................................................................................................................................................................AGTTGTTCGACCCTGCAGGGTG............................2280.252200000
....................................................................................................................ACTTCTTAGAGCTTGAAGAT......................................................................................................................................................................................2040.251100000
....................................................................................................................ACTTCTTAGAGCTTGAAGA.......................................................................................................................................................................................1940.251100000
.....................................................................................................................CTTCTTAGAGCTTGAAGATTCCAGCA...............................................................................................................................................................................2640.251100000
........................................................................................................................................................................................................CCCCCTGACATTCCTCT------CCA-GGAGTCC....................................................................................2750.201100000
............................................AAGGAAGTGGACATCCAATTCCATG--GA.....................................................................................................................................................................................................................................................27100.202200000
.................................................................................................................................................................................................................................A-GGAGTCCTACACAAAAAGGTCGGTCC.................................................................2750.201100000
......................................................................................................................................................GACCCTAGGCCTACGTTGGCAA..................................................................................................................................................2250.201100000
............................................AAGGAAGTGGACATCCAATTCCATG--GAT....................................................................................................................................................................................................................................................28100.202200000
.............................................AGGAAGTGGACATCCAATTCCATG--GA.....................................................................................................................................................................................................................................................26100.202200000
....................................................GGACATCCAATTCCATG--GATTGT.................................................................................................................................................................................................................................................23100.202200000
..........................................................................................................................................................................................................CCCTGACATTCCTCT------CCA-GGAGT......................................................................................2350.201000010
.......................................................................................................................................................................................TCTTTTCTTTTTTTCG-CCCCCTG...............................................................................................................2350.201100000
..........................................................................................................................................................................................................CCCTGACATTCCTCT------CCA-GGAGTCC....................................................................................2550.201100000
.........................................................................................................................................................................................................................................CTACACAAAAAGGTCGGTCCTTTCACC..........................................................2750.201100000
.................................................................................................................................................................................................................................A-GGAGTCCTACACAAAAAGGTCGG....................................................................2450.201100000
........................................................................................................................................................................................................................................CCTACACAAAAAGGTCGGTCCTTTCACA..........................................................2850.201100000
.......................................................................................................................................................................................TCTTTTCTTTTTTTCG-CCCCCTGAA.............................................................................................................2550.201100000
........................................................................................................................CTTAGAGCTTGAAGATTCCAG.................................................................................................................................................................................2150.201100000
..........................................................................................................................TAGAGCTTGAAGATTCCAGCAA..............................................................................................................................................................................2260.171100000
..........................................................................................................................TAGAGCTTGAAGATTCCAGCAC..............................................................................................................................................................................2260.171000010
...................................................TGGACATCCAATTCCATG--GATTGC.................................................................................................................................................................................................................................................24120.172000020
.............................TGCGGGGTTTCCCTTAAGGAAGTGGAC......................................................................................................................................................................................................................................................................2760.171000010
......................................................................................................................................................................................................................................GTCCTACACAAAAAGGTCGGTCC.................................................................2360.171100000
.......................................................................................................................................................................................................................................TCCTACACAAAAAGGTCGGTCCTTG..............................................................2560.171100000
..................................................................................................................................................CAAAGACCCTAGGCCTACGTT.......................................................................................................................................................2160.171000010
.............................................................ATTCCATG--GATTGTTTGAAGG..........................................................................................................................................................................................................................................2170.141010000
........................................................................................................................................................................................................................................................................................CTGCAGGGTGGCTGGCACCCT.................2170.141100000
.....................................................................................................................................................................................................................CTCT------CCA-GGAGTCCTACACAAAAAAA........................................................................2670.141100000
.........................AGAGTGCGGGGTTTCCCTTAAGGAAG...........................................................................................................................................................................................................................................................................2670.141100000
........................................................................................................................................................................................................................T------CCA-GGAGTCCTACACAAAAAGGTC......................................................................2570.141000010
...................................................TGGACATCCAATTCCATG--GATTGTTTG..............................................................................................................................................................................................................................................2770.141100000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGGCTA........................2780.131100000
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAGC...............................2280.131100000
........................................................................................................................................................................................................................................CCTACACAAAAAGGTCGGTCCTTT..............................................................2480.131100000
........................................................................................................................................................................................................................................................................GCCAAGTTGTTCGACCCTGCAGG...............................2380.131100000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGGCTC........................2780.131000010
.........................................................................................................................................................................................................................................CTACACAAAAAGGTCGGTCCTTT..............................................................2380.131100000
.............................................................................................................................................................................................................................................................................GTTGTTCGACCCTGCAGG...............................1880.131100000
..........................................................................................................................................................................................................................................................................CAAGTTGTTCGACCCTGCAGGGTG............................2480.131100000
..........................................................................................................................................................................................................................................................................CAAGTTGTTCGACCCTGCAGGGTGC...........................2580.131100000
..............................................................................................................................................................................................................................................................................TTGTTCGACCCTGCAGGGTGGCTGG.......................2580.131100000
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGGCT.........................2680.131000001
........................................................................................................................................................................................................................................CCTACACAAAAAGGTCGGTCCT................................................................2280.131100000
...........................................................................................................................................................................................................CCTGACATTCCTCT------CCA-GGAGT......................................................................................2280.131000010
...........................................................................................................................................................................................................................................................................AAGTTGTTCGACCCTGCAGGGTGA...........................2480.131100000
...........................................................................................................................................................................................................CCTGACATTCCTCT------CCA-GGAGTCC....................................................................................2480.131000010
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGCAGGGTTA...........................2680.131100000
...................................................TGGACATCCAATTCCATG--GAC....................................................................................................................................................................................................................................................21100.101000010
..................................................GTGGACATCCAATTCCATG--GATTG..................................................................................................................................................................................................................................................24100.101100000
..............................................................................................................................................................................................................................................................TTCACAGATCGCCAAGTTGTTCGACCC.....................................27100.101000010
..........................................................................................................................................................................................................................................................................CAAGTTGTTCGACCCTGC..................................18100.101100000
.........................................................................................................................................................................................................................................................................CCAAGTTGTTCGACCCTGC..................................19100.101000010
..........................................................................................................................................................................................................................................................TCCTTTCACAGATCGCCAAGTTGTT...........................................25100.101000010
............................................AAGGAAGTGGACATCCAATTCCATG--GAA....................................................................................................................................................................................................................................................28100.101100000
...................................................TGGACATCCAATTCCATG--GAT....................................................................................................................................................................................................................................................21100.101100000
............................................AAGGAAGTGGACATCCAATTCCATG--.......................................................................................................................................................................................................................................................25110.091100000
...............................................................................................................................................................................................................................................................TCACAGATCGCCAAGTTGTTCGACCC.....................................26110.091100000
............................................AAGGAAGTGGACATCCAATTCCATA--.......................................................................................................................................................................................................................................................25110.091000010
.............................................AGGAAGTGGACATCCAATTCCATG--G......................................................................................................................................................................................................................................................25110.091100000
.................................................................................................................................................................................................................................................................ACAGATCGCCAAGTTGTTCGA........................................21110.091000001
........................................................................................................GGCTGTGCGAGGACTTCTTAGAGC..............................................................................................................................................................................................24110.091100000
............................................AAGGAAGTGGACATCCAATTCCATT--.......................................................................................................................................................................................................................................................25110.091100000
..........................................................................................................CTGTGCGAGGACTTCTTAGA................................................................................................................................................................................................20120.081100000
...................................................................................................TCATCGGCTGTGCGAGGACTT......................................................................................................................................................................................................21120.081100000
.............................................................................................G---AGTCATCGGCTGTGCGAGG..........................................................................................................................................................................................................20130.081100000
..................................................................................................GTCATCGGCTGTGCGAGG..........................................................................................................................................................................................................18130.081100000
droAna3
CTAAA---------------------ATCGGCAGGAATTGTATTCAGGAAATGGGCACTTAATCATCCACAGATCTTCTTTACTGCATTTCTGAC--CAGCACTTGGCTCAAATAAGAAATGTAGAAGTGAATTACTAGGAGACTATTAA---------------------CTCACACGTGGACTCCTACAGCTTTAAT-GTTCAATTTGACATCCC--------G-CC-CTCCTTTACTAAAAGTTCGTTTCTTTAAGAATTCGCTCGCCTCTAAGATCCCTTAGGCTTTATAGTCCCCGCTGCTG-----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................ATTACTAGGAGACTATTAA---------------------CTCACACGT..........................................................................................................................................2811.001000010
droBip1
CTAAA---------------------ATCGATAGGAATGGAATTCAGGAAATGGC-ATCAAATCATTCA--AATATCTTATCCGGAATTCCTGAC--CAGCACCTGGCTCAAAAAAGAAATGTAGAAGTA-----------------------------TCTCGATTAGAGCTCACAAGAGAATTTTTATAGCTTTAAG-GTTCGATTTGACCTTTA--------A-GC-CTCCTTTACTAAACGTTCCTTTCTTTCAGTAGTCGCTCGCCTCTATGATCCCTTAGGCTTTATAGTTCCTGTCA---CTACT------SizeHit CountTotal NormTotal
No Reads
droKik1
ATAAA---------------------ATCCGCTTGCATGGAGTTGCGGAAATGGTCCAGCAACGAAGAG--AGCCTTTTGCAATCGATTCCGCCA--GAGCATCAATGAAGTCGGACACCTCTGAACTGGGACACTGCGGATCCGATCAAGGTGTTAGGAATGTATTGGCTCCCCAATAAGGACTGCTTCAAATTTCAG-GTCAATTTTGAGATACC--------A-CC-TAGTTTCACCAAAAGGACGATCCTGTCGAGCATAGCGAGGCTGTTCGACCCACTAGGTTTCATCGCGCCAGTCATCA---TC------SizeHit CountTotal NormTotal
No Reads
droFic1
CTTCA---------------------ATCCGCTGGCATGTGTCTCAGGAAATGGGCATCTAATCATCCT--GACTTGCTGGTTAACATTGCGCAA--GAACATATGTCGAATTCAACAATTTTAGAAGTCGACAATCATGATTCAATA-AAACACTTGGTTTGTATTGGCATCCTAAAAGAGATGTTTATGGCTTTCAT-ATAAAATTCAAAATTAG--------T-CA-AGAATTTACTAAACGAGCATTACTTTCCACAGTGGCCCGGTTGTACGATCCATTAGGATTTATTGTGCCAATTATCACAACT------SizeHit CountTotal NormTotal
No Reads
droEle1
CTTCA---------------------CTCAGTCGGAGTGGAGCTAAGAAAATGGTCTGCAAATAACACA--TCAT-TTTGCTAGGAATCCC-GACCCTCTCATTTATCCAATAGGACACTTTTGGACTTCAACCATCAGAAGCCTATCAAGACGTTAGGGCTATATTGGCACCCTCATCGCGATTCCAACGGCTTTAAA-ATAAAAATTGAAA---------------------TTTACTAAACGTTCGGTTTCTTCCACAGTGGCCCGTCTCTACAACCGCTTAGGTTTCATCGCTCCGATTGTCACCACA------SizeHit CountTotal NormTotal
No Reads
droRho1
CTGCT---------------------TTCAGCCGGAATTGAATTCAGGAAGTGGTCTGCCAATCATCAA--TCGCCTCTGAAAGACATTCCCTCG--GAACATCTATCTAACTCTAGCATTTTGGAATTTGATAATCATGATACTATCAAAGCCTTAGGCCTCTATTGGCATCCCAATCGTGATTATTTTGGCTTTAAAAATAAAATTCAAAATAAATCCTATGCT-AT-CCTATTAACCAAACGATCTCTTCTCTCCACAGTCGCTCAATTATATGATCCTCTAGGGCTTATAACTCCAGTTATCACAACCGCTAAASizeHit CountTotal NormTotal
No Reads
droBia1
CTGCA---------------------ATCAGCAGGCATGGAGCTCAAGAAGTGGGCATCCAACCATCCA--GATATCTGAGAAAGCATCCCAACT--ACAGATCTCTCTAACAGTAGCATTTTTGAGATAGACAATAAGGACTCCATTAAAACTTTAGGGTTGTATTGGCATCCAAACAAAGATGGTTTTGGTTTTAAT-CTTAATTTTTCTCTCAA--------T-CC-TATATTCACCAAACG-----TTCTATCTACAGTAGCACGCTTATTCGATCCGTTGGGATACCTGGCACCAGTGATCC---TG------SizeHit CountTotal NormTotal
No Reads
droTak1
CTTCA---------------------ATCAGCTGGTATGGAGCTTCGAAAATGGGCAGCAAATCATCCC--AGTCCTTTGAACTCTATTCCTCCT--GAGCACATGTCCAATTCCAAAATTTTGGAAATCGTAAACCAAGAGTCCATTAGAACTTTAGGGCTATATTGGCACCCCAAAAAAGACTTTTATGGTTTCAAA-ATAAAATTTACAATTGA--------C-AA-AATTTTCACTAAGCGATCAATTCTTTCTACAGTTTCACGTCCGTACGATCCTTTAGGTTTCGTTGCTCCAGTCATAATCATC------SizeHit CountTotal NormTotal
No Reads
droEug1
ATAAA---------------------ATCCGCGTGCATGGAGTTGCGGAAATGGACTAGCAACGAGTCC--AGTCTCTTGCTCTCGATTCCTGTG--GAGCATCAGTGCAGCAGGACTCCTTTAAACTGT---------------------------ATGATGTATTGGCTCCCGAATAAGGACTGTTTAAAATTTCAG-GTCAATTTTGAGATTCC--------A-GC-TAGGTTCACCAAACGTATGATTCTATGGAGCATAGCTAGGCTGTACGATCCATTGGGTCGCATCGCACCAGTCATCA---TC------SizeHit CountTotal NormTotal
No Reads
dm3
TTAAA---------------------ATCCTCTGGCATGGAGCTACGAAAATGGGCTAGTAATGACCAG--GATCTGATGGCAACGATACCTCTC--GAGCATCGATGCAAGCAGACATCCCTCAGTTGGGACAATGCGGACACCATCAAAACACTGGGTATGTACTGGTTGCCCAAGCAAGATTGCTTCACTTATAAA-TTACTAGCAAATACTCC--------A-GC-CGGTATAACAAAACGAGAAATCCTATCGACCATAGCACGTTTATTTGATCCTCTTGGATTAATCGCTCCAGTTGTAATTTCA------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................ATGGAGCTACGAAAATGGGCT.....................................................................................................................................................................................................................................................................2115287.6743150000000000000000000000000017000000000100000000000011010000000000000000000000000000000000050000000000000000110010000110000000000000000000000001000000000000000006018412230000000000000000075418300000000000000000000200003731211002220200035362810000000003310660090241166001256500101310012200000000057931117000000001000000240097020039979291459722884348100000000103319032072020
..................................GCATGGAGCTACGAAAATGGG.......................................................................................................................................................................................................................................................................2115136.6020490000000000000000050000000010000000001000000000010000003819000000000000000000000000001000012700000000000020013171412610270000600000000000000000000000000000000000000000000017819380000000000000000341140000000000000000020009000221770000001000001151930000004001161100301103100231000201200011100000000533162900000000000001014004711009354986253082312440000000019626250500
...................................CATGGAGCTACGAAAATGGGC......................................................................................................................................................................................................................................................................2115122.73184100000000000000000150000010010000000000000100000100000001111300000000000000000000000000000000000000000000000221160000000000000000000000000000000000000001000400000010500170800000000000000031200300001000010000000101010002010600001000000266448110000002001312200102237810606001101200001000000000514200100000000000000001200230100744432925381143121010000000012328326500
.................................................................CCAG--GATCTGATGGCAACGAT......................................................................................................................................................................................................................................212085.0017000000000000000000000000000011000000000000000000000101010000000000000000000000000000000000411000000000000000015416000000000000000000000000000000000000100000000000000540020000000000000000700000000000000000000100000001150000100000000000000000010032030020101000931000303100001000000000011607000001001000000100039300016081110152306453260000111028105900
............................................................AATGACCAG--GATCTGATGGCA...........................................................................................................................................................................................................................................212067.8513570000000000000000000000000020000000000000000000000000000000000000000000000000001200000000000000000000000033180100000000000000000000000000000000000001000000000080201900000000000000000002860020010000000000000051001000117000000630210061247200000007012383600505000005760002025011030000000037552921900000000000100013001921100191705172290337200000000053162241300
..........................................................GTAATGACCAG--GATCTGATGG.............................................................................................................................................................................................................................................212059.65119300000000000000000000000100000000000000000000000000000000000000000000000000000000000000022000000000000000000010000000000000000000000000000000100000000000000000010001000000000000000002217000000000000000000020000000000000101200003212622550000000110164180020171142001531201702101000100000000409160000000000020002005901004359708014200000000006015522610
.............................................CGAAAATGGGCTAGTAATGAC............................................................................................................................................................................................................................................................211554.278140000000000000000000000000000000000000100000700080001302290000000000000000000000000000000007000000000000000032950000000000000000000000000000000000000000000000000373400200000000000000000001401001000000000000002000000035014000180160009524634100000010051100030213120203002402020000000000001760200001000001100010012322011845755178947000000009524051240
..............................TCTGGCATGGAGCTACGAAAATGGGC......................................................................................................................................................................................................................................................................261550.13752000000010000000000000108000000000000407095925523121564200000000000000000000000000000701010000000101000000000002001110200000000000000000000000017162420132322131962123019800000000000000000000000000000000004150240013200000002560161800040035105034000100000010010000000013000002000000000000000000000000000000017000012426010000040146300000100200003239121320000
...........................................................TAATGACCAG--GATCTGATGGC............................................................................................................................................................................................................................................212049.359870000000000000000000000000000000000000000000000000100000300000000000000000000000000000000000000000000000005000000001000000000000000000000000000000000000000000010100017000000000000000016000200000000000000101000000001002000010011207199198140000000001122300001319300290300301300004000000000003130000000000000000007330004336601201190000000003816424530
..........................................................................................................................TCAGTTGGGACAATGCGGACA...............................................................................................................................................................................212040.308060000000000000000000000000030000000000000000010000000000000000000000000000000000000000001700000000000000013372000000000000000000000000000000000000000003000010010501025000000000000000006003200000000000000000000000007105000001210003726204000000100120000101000000210002050000020000000107401000000000010000200111200424230162145223105001000000308615220
...........................................TACGAAAATGGGCTAGTAATG..............................................................................................................................................................................................................................................................211539.3359000000000000000000000000200000000000000000100000001000000000000000000000000000000000000171500000000000000021202144000030000000000000000000000000000000000000000031132200120000000000000000002001100000100000000000200000001395110001200000159402000000100101010060102100110100209000000000000004105060000000000001206002321001658901323352200000001143712240
......................................................................................ATACCTCTC--GAGCATCGATGC.................................................................................................................................................................................................................212035.65713000000000000010000000000006000000000000000000000000100000000000000000000000000000000000140000000000000000210000000000000000000000000000000000000000000000020010023200200100000000000000000000000000000000000000300000060000000100000191167532000000101020100300001106401005054000050000000011218811300000000000100000160331035760253102500000100010325210
.........................................................................................................................CTCAGTTGGGACAATGCGGAC................................................................................................................................................................................212027.55551000000000000000000000000000000000000200000000000000000000000000000000000000000000000000010000000000000002025000000000000000000000000000000000000000000000000116176020000000000000000074501000000000000000000000000010000013101000061212514000000000310000201011002102011114000132000000002540100000000000000030111000036104120931162600000000010468170
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..............................TCTGGCATGGAGCTACGAAA............................................................................................................................................................................................................................................................................20151.60240000000000000000000000000000000000081000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000500000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000100001000000000001020
...........................TCCTCTGGCATGGAGCTACGAAAATGGG.......................................................................................................................................................................................................................................................................28151.60240000000000000000000000000000000000001010000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200100200000000000000000000000000000000000000000000000000000000090000000010000200001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................TCAGTTGGGACAATGCGGACACCATC..........................................................................................................................................................................26201.60320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000001000000000000000000000000000000000000000000000000000000000000000100000000040305361001000000000000000000000000000000000000000000000000000000000000000000000020300000000000000000000000000
................................................................ACCAG--GATCTGATGGCAACG........................................................................................................................................................................................................................................20201.60320000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000001010000000000520000000000000000000000100010213102600000000000000
................................................................................GCAACGATACCTCTC--GAGCAT.......................................................................................................................................................................................................................21201.60320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000020100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000300000000000000003000000010000000000000000010000000000010000000000000000000000000000000000000008200000500000000003000
............................................................................................................................................................................................................................................................CTATCGACCATAGCACGTTTA.............................................21201.60320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000100100100000002010010000000000000000000000000000000000000006000010300000000005010
............................................................................GATGGCAACGATACCTCTC--GAGCATC......................................................................................................................................................................................................................26201.603200000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000020000000000302000000000000000000000000000000000000000000000000000000140000003210000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
......................................................................................................................................................................................................................................................................TAGCACGTTTATTTGATCCTC...................................21201.60320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000100000000100103000000000000000120000000000000000000010000000000000000000000007000
...........................................................................................................................CAGTTGGGACAATGCGGACACC.............................................................................................................................................................................22201.55310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000075000000000010000000000000000000000000000000000010000000000000000000010010100004002000300000000011010
...........................................................................................................................................................TGGGTATGTACTGGTTGCC................................................................................................................................................19201.553100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000001000000000000000000000000000000000000000000000001001000000000000000515000
...............................................................GACCAG--GATCTGATGGCAA..........................................................................................................................................................................................................................................19201.55310000000000000000000000000000000000000002000000000004000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000004000000000000010000000000000001002001000000000000000000500000000000000000000000000010000200000000000000
..............................................................................TGGCAACGATACCTCTC--GAGCATCG.....................................................................................................................................................................................................................25201.55310000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000300000000000000000000000000000000000011003000100000000000060000000601000000000000000000000000000000000000000000000000000000000000000000000000000001000003000000000000000000001000
................................................................................................................................................................................................................................................................CGACCATAGCACGTTTATTTG.........................................21201.55310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000300000203010000000000000000300000000000000000010000103002000000000000027100
..............................................................TGACCAG--GATCTGATGGCAACGATA.....................................................................................................................................................................................................................................25201.55310000000000000000000000100000000000000001000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000002003110100200000000000000000000000000000000000000000100000000000000147000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................CTTCACTTATAAA-TTACTAGC..............................................................................................................21131.54200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000020000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000001100001034000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000012100
................................................................................................................................................................................................................................................AAACGAGAAATCCTATCGACC.........................................................21131.54200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000150001004000000000011000000000000000001000000000000000000000000000000000000000000000000000000000000000004000
..AAA---------------------ATCCTCTGGCATGGAGCTACGAAAA...........................................................................................................................................................................................................................................................................28151.53230000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000050118420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TCTGGCATGGAGCTACGAAAATGGGCATC...................................................................................................................................................................................................................................................................29151.5323000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGCACGTTTATTTGATCCTCTTGGATT............................27201.50300000000000000000000000010000000000000002000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000000000000000000000002613209000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................CATCGATGCAAGCAGACATCCCTCAGT...............................................................................................................................................................................................27201.50300000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000106890000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................AGTTGGGACAATGCGGAC................................................................................................................................................................................18201.50300000000000000000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000010000080006110000000000010000000000000000100000000001000000000000000000100000000000000000000000000100000000000000
.TAAA---------------------ATCCTCTGGCATGGAG....................................................................................................................................................................................................................................................................................20201.503000000000000000000000000000000000000000010000010000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001600000010012000000000000000000000000000000001000010000000000000000000000000000000000020000000000000000000000000100
..................................................................................................................................................................................................................................................................................................AATCGCTCCAGTTGTAATTTC.......21201.50300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000006000000000000000000100000110000002000000000000000000000000000000000000000000210000000200000000039100
.................................................AATGGGCTAGTAATGACCAG--GATCTGA................................................................................................................................................................................................................................................27201.50300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201020010100000000100200000000000000000000000000000000000000000000000000000000000000011140406300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AACGATACCTCTC--GAGCATCGATGCAAG..............................................................................................................................................................................................................28201.50300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000001000000000000000000000000000020000001050124410000000000000000000000000000000000000000000000000000000000000000000301000000100000000000000001000000000
.............................................CGAAAATGGGCTAGTAATGACCAG--GAT....................................................................................................................................................................................................................................................27151.472200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001010200015000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100
.....................................TGGAGCTACGAAAATGGGCTAGTAA................................................................................................................................................................................................................................................................25151.47220000000000000000000000000000000000000000000100000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000237000100011000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................CCTCTGGCATGGAGCTACGAAA............................................................................................................................................................................................................................................................................22151.47220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000004000000000000000001000000000000000000000000000063000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000001200000000000000000000
.............................................................................................................................................................................................................................................ACAAAACGAGAAATCCTATCG............................................................21131.46190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000011010000000000100000100000000000000100000000000000000000000000000103000000300000000032000
.................................................................................................................................................................................................................................................AACGAGAAATCCTATCGACCATAGCACGT................................................29131.46190000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000098000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GACCAG--GATCTGATGGCAACGATACC...................................................................................................................................................................................................................................26201.45290000000000000000000000000000000000000000101000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010060010000000000000000000000000000000000000000102000000000000000000050000001110000110000000000000000000000000000000000000000000000000000000000002000000200000000000000000000000000000000000
..............................................................................................................................TTGGGACAATGCGGACACCATC..........................................................................................................................................................................22201.45290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002042000000020000100010000000010000001000000000100010000000000000000000010000000002100000100000000020130
.TAAA---------------------ATCCTCTGGCATGGAGCTACG...............................................................................................................................................................................................................................................................................25201.45290000000000000000000000100000000000000000110000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000100000001000000000000140300051000000000000000000000000000000000000000000000000000000000000000001100000000001000000000000000200000000
....A---------------------ATCCTCTGGCATGGAGCTA.................................................................................................................................................................................................................................................................................20201.45290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000200040000000000000000000000000000000000000000000000000020102000005001000000000000000000000000001000000000000000000001000000000000000001000020001001000100200000000001000
..........................................................................................................................................................CTGGGTATGTACTGGTTGCCC...............................................................................................................................................21201.452900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000002000000000001000000000000000000000000000000000000001000000001000000000212110
.............................................................................................................................GTTGGGACAATGCGGACACC.............................................................................................................................................................................20201.452900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000000000000000000050000000100000001000000000000010000000000100000000000000000000010000000000000000000000020000011000000000000000001000
................................................................................................................................................................ATGTACTGGTTGCCCAAGCAA.........................................................................................................................................21201.452900000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200001010000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000012200
...................................................TGGGCTAGTAATGACCAG--G......................................................................................................................................................................................................................................................19201.40280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000110000000300000001130300000000000000000000000100000000000100000000000100100000000000000000020000000000000000000000023010
.....................................................................................GATACCTCTC--GAGCATCGATGCAAGCA............................................................................................................................................................................................................27201.40280000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000100000002300000000006000000110410500000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................TAGCACGTTTATTTGATCCTCTTGGAT.............................27201.40280000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001070010000000000000000000000000000000000000000000000000000200000000000000000040103212000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
..........................................................GTAATGACCAG--GATCTGATGGCAA..........................................................................................................................................................................................................................................24201.40280000000000000000000000000000000000000003000100010000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000010001050005000000000000000000000000000000000100000000000000000000000001001000000000000000000000000000000000000200
..................................................................................AACGATACCTCTC--GAGCATCGATGCA................................................................................................................................................................................................................26201.40280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000300000000000000000000000000000000000200000000000000000090000000320302200000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................GATGGCAACGATACCTCTC--G............................................................................................................................................................................................................................20201.40280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000002330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000060000001000000000000000008010
droSim2
CTCAA---------------------GTCAGTTGGCATGGAGCTCCGGAAATGGTCAGCAAACCACACA--GCGCTTCTAAGTCACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................TGGAGCTCCGGAAATGGTCAGCAAAC...............................................................................................................................................................................................................................................................2630.33100000000001000000
droSec2
TTAAA---------------------ATCCCCTGGCATGGAGCTACGAAAATGGGCTAGTAATGACCAG--GATCTGATGGCAACGATACCTCAC--GAGCATCGATGCAAGCAGACATCTCTCAGTTGGGACAATGCGGACACCATCAAAACACTGGGTATGTACAGGTTGCCCAAG-CAGATTGCTTCACTTATAAA-TTACAAGCAATTACTCC--------A-GC-CGGTATAACAAAACGGGAAATCCTATCGACCATAGCACGTTTATTTGATCCTCTTGGATTAATCGCTCCAGTTGTATTGAAA------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................TACCTCAC--GAGCATCGATGCAAGCAGA..........................................................................................................................................................................................................2721.5032010
........................................................................................................................TCTCAGTTGGGACAATGCGGAC................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................GACCATAGCACGTTTATTTGATCC.....................................2480.7566000
...............................................................................GGCAACGATACCTCAC--GAGCATCGA....................................................................................................................................................................................................................2520.5010001
.........................................................................................................................................................ACTGGGTATGTACAGGTTGC.................................................................................................................................................2020.5010010
...................................................TGGGCTAGTAATGACCAG--GATCTGAT...............................................................................................................................................................................................................................................26100.5053011
.................................................................................................................................................ATCAAAACACTGGGTATGTACAGG.....................................................................................................................................................2420.5011000
................................................................................................................................................CATCAAAACACTGGGTATGTACAGGT....................................................................................................................................................2620.5011000
.......................................................................................TACCTCAC--GAGCATCGATGCAAGCAGACA........................................................................................................................................................................................................2920.5011000
.................................................................................................................................................................................................................................................................GACCATAGCACGTTTATTTGATCCTC...................................2680.5044000
...................................................TGGGCTAGTAATGACCAG--GATCTG.................................................................................................................................................................................................................................................24100.5054010
.................................................................................................................................................................................................................................................................GACCATAGCACGTTTATTTGATCCT....................................2580.3833000
...................................................TGGGCTAGTAATGACCAG--GATCTGA................................................................................................................................................................................................................................................25100.2021010
....................................................GGGCTAGTAATGACCAG--GATCTGA................................................................................................................................................................................................................................................24100.2022000
................................TGGCATGGAGCTACGAAAATGGGC......................................................................................................................................................................................................................................................................24110.1821010
..........................................................................................................................TCAGTTGGGACAATGCGGACA...............................................................................................................................................................................21130.1521010
.................................................................................................................................................................................................................................................................GACCATAGCACGTTTATTTGATCCTCT..................................2770.1411000
.........................................................................................................................................................................................................................................TATAACAAAACGGGAAATCCTATCGACCA........................................................2970.1411000
...................................................TGGGCTAGTAATGACCAG--GATCTGC................................................................................................................................................................................................................................................25100.1010010
...................................................TGGGCTAGTAATGACCAG--GATCT..................................................................................................................................................................................................................................................23100.1011000
...................................................TGGGCTAGTAATGACCAG--GATCTGATG..............................................................................................................................................................................................................................................27100.1011000
.....................................................GGCTAGTAATGACCAG--GATCTGA................................................................................................................................................................................................................................................23100.1011000
............................................................AATGACCAG--GATCTGATGGCAACG........................................................................................................................................................................................................................................24100.1010010
....................................................GGGCTAGTAATGACCAG--GATCTG.................................................................................................................................................................................................................................................23100.1011000
................................TGGCATGGAGCTACGAAAATGGGCT.....................................................................................................................................................................................................................................................................25110.0910010
................................TGGCATGGAGCTACGAAAATGG........................................................................................................................................................................................................................................................................22110.0911000
................................................................................................................................................CATCAAAACACTGGGTATGT..........................................................................................................................................................20110.0911000
.........................................................................................................................................................................................................................................................................................TCTTGGATTAATCGCTCC...................18110.0911000
.................................................................................................................................................ATCAAAACACTGGGTATGT..........................................................................................................................................................19110.0911000
..........................................CTACGAAAATGGGCTAGTAATGACCA..........................................................................................................................................................................................................................................................26120.0811000
...................................CATGGAGCTACGAAAATGGG.......................................................................................................................................................................................................................................................................20120.0810010
...............................................................................................................................TGGGACAATGCGGACACCATCAAAACAC...................................................................................................................................................................28130.0811000
..........................................................................................................................TCAGTTGGGACAATGCGGACACCAT...........................................................................................................................................................................25130.0810010
...................................................................................................................................ACAATGCGGACACCATCAAAACACTGG................................................................................................................................................................27150.0710010
droYak3
CTCAG---------------------TTTTGTTGGCATGGAACTCCGGAAATGGGAATAGAACCACCCA--GATCTACTTCGTGATATTCCCGAA--GGAGATTTATGCAACAACTCTATCCTTGAAATAGACAACAACGACGCCATTAAAAC--AAGGATTGTACTGGCAA--------CGACGACTACGGATTCAAA-ATAAACTTCGCAAGCAA--------T-CC-CACAATGACTAAAATATCGCTTTTATCCACCGTAGCACGTCTTTTCGACCCATTAAGTTTTTT-GCACCCATCATCG---TCGTGTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ATGGA---------------------GAAGGCCGGCATGCATCTGCGAAAATGGGTTGCAAATGACGAA--CGTATTTTAGCCGACATTCAGGAC--GACGGT----GCTACGGAGAAAATCTG--CATTGAGGAGAATGAATCGATCAAAACCTTAGGACTCCAATGGGATCCGAAGAAGGATACATTTACGTTTTCG-GCAGAAAAACCAACGCT--------A-AC-ACGCATAACAAAGCGGTTAGTGTTATCACAGTTGTCCAGAATTTTCGACCCACTAGGATGGTTGGCACCTGTAA------CG------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................GGATACATTTACGTTTTCG-GCAGAT................................................................................................................25201.052100000021
.....................................................................................................................................................................................................................................................................TTGTCCAGAATTTTCGACCCACTAGGATGGT..........................31200.3570000007
........................................................................................................................................AATGAATCGATCAAAACCTTAGGAC.............................................................................................................................................................25200.2044000000
.....................................................................................................................................................................................................................................................................TTGTCCAGAATTTTCGACCCACTAG................................25200.2044000000
...................................................................................................................................................CAAAACCTTAGGACTCCAATGGGATCC................................................................................................................................................27200.1533000000
.....................................................................................................................................................................................................................................................................TTGTCCAGAATTTTCGACCCACTAGG...............................26200.1533000000
.............................................................................................................................................ATCGATCAAAACCTTAGGACTCC..........................................................................................................................................................23200.1022000000
.................................................................................................................................................................................................................................................................................TTCGACCCACTAGGATGGTTGGCAC....................25200.1022000000
.............................................................................................................................................ATCGATCAAAACCTTAGGACTCCAAC.......................................................................................................................................................26200.0511000000
.....................................................................................................................................................................................................................................................................TTGTCCAGAATTTTCGACCCACTAGA...............................26200.0511000000
..............................................................................................................ACGGAGAAAATCTG--CATTGAGG........................................................................................................................................................................................22200.0511000000
...........................................................................................................GCTACGGAGAAAATCTG--CATTGAGGAG......................................................................................................................................................................................27200.0511000000
................................................................................................................................................................................................................................................AAGCGGTTAGTGTTATCACAT.........................................................21200.0511000000
........................................................................................................................................................CCTTAGGACTCCAATGGGAT..................................................................................................................................................20200.0511000000
........................................................................................................................................................................................................................................GCATAACAAAGCGGTTAGTGTTATCACAG.........................................................29200.0510000100
.................................................................................................GACGGT----GCTACGGAGAAAATCTG--CAT.............................................................................................................................................................................................26200.0511000000
..............................................................................................................................................................................................................................................CAAAGCGGTTAGTGTTATCACA..........................................................22200.0510001000
...................................................................................................................................AGGAGAATGAATCGATCAAAACC....................................................................................................................................................................23200.0511000000
...............................................................................................................CGGAGAAAATCTG--CATTGAGGAG......................................................................................................................................................................................23200.0511000000
..............................GCCGGCATGCATCTGCGAAAAT..........................................................................................................................................................................................................................................................................22200.0511000000
............................................................................................................CTACGGAGAAAATCTG--CATTGAGGAGAA....................................................................................................................................................................................28200.0511000000
.................................................AATGGGTTGCAAATGACG...........................................................................................................................................................................................................................................................18200.0511000000
...................................................................................................................................................CAAAACCTTAGGACTCCAATGGGATC.................................................................................................................................................26200.0511000000
.................................GGCATGCATCTGCGAAAATGGGT......................................................................................................................................................................................................................................................................23200.0511000000
......................................................................................ATTCAGGAC--GACGGT----GCTA...............................................................................................................................................................................................................19200.0510000100
...........................................................................................................................................GAATCGATCAAAACCTTAGGACTC...........................................................................................................................................................24200.0511000000
................................................................................................................................................................................................................................................................................TTTCGACCCACTAGGATGGTTGGCA.....................25200.0511000000

Generated: 05/18/2015 at 02:01 AM