dps_1852

Name	Class	Family	Strand
BEL-1_DPer-LTR	LTR	Pao	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAGCAGTTTTTTTATTTCTCGCGACGGCTGCTAAGAGGCTTCTAAGAGGTTCACTGGATCAACGATAGATGTTGGAGAATTGATCTTCGATCCGCCCTACTACAAACATAACTGATTCATTAATGGATGGTACTGAGTACTATCCATTAGCTGATCCTATCTTTAATAAGCCACAAAAAGGCGATTTGTTATTAGTTCTAGACGCCTTTTTCGATACGTGGCTACGGACCCAGCGGCGCTCAAAGTATCAC ***************************************************..((((((.........((((((((.....))))))))............................((((((((((((((...)))))))))))))).))))))********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM343916 embryo
.................................................................TGGATGTTGGAGACTTGA........................................................................................................................................................................	18	2	9	1.44	13	12	1	0
...................................................................................................................................ACTGAGTACTATCCATTAGCTGATCC..............................................................................................	26	0	1	1.00	1	1	0	0
.....................................................CTGGATCAACGATAGATGTTGGAGA.............................................................................................................................................................................	25	0	1	1.00	1	1	0	0
.................................................................................................................................................................................................................TTCGATACGTGGCTACGGACC.....................	21	0	1	1.00	1	1	0	0
....................................................................................................TACAAACATAACTGATTCATTAATGGA............................................................................................................................	27	0	1	1.00	1	1	0	0
..................................................................................................ACTACAAACATAACTGATTCATTAA................................................................................................................................	25	0	1	1.00	1	1	0	0
........................................................................................................................TAATGGTTGGTACCGGGTAC...............................................................................................................	20	3	2	0.50	1	1	0	0
...........................................................................................................ATAACTGACTCATGAATGAAT...........................................................................................................................	21	3	7	0.14	1	1	0	0
........................................................................TGGAGAATTGATCTTCGATCCGCCC..........................................................................................................................................................	25	0	9	0.11	1	1	0	0
...................................................................GATGTTGGAGACTTGATAGT....................................................................................................................................................................	20	3	11	0.09	1	1	0	0
......................................................................................................................................................................................AATTTGATGTTAGTTCTAGA.................................................	20	3	15	0.07	1	0	0	1

GTCGTCAAAAAAATAAAGAGCGCTGCCGACGATTCTCCGAAGATTCTCCAAGTGACCTAGTTGCTATCTACAACCTCTTAACTAGAAGCTAGGCGGGATGATGTTTGTATTGACTAAGTAATTACCTACCATGACTCATGATAGGTAATCGACTAGGATAGAAATTATTCGGTGTTTTTCCGCTAAACAATAATCAAGATCTGCGGAAAAAGCTATGCACCGATGCCTGGGTCGCCGCGAGTTTCATAGTG ********************************************************************************************..((((((.........((((((((.....))))))))............................((((((((((((((...)))))))))))))).))))))***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	SRR902011 testis	V112 male body	GSM343916 embryo	M022 male body
.............................CGATTCTCCGAAGATTCTCCAAGTGAC...................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................AAGACTAGGAGAGAAATTATTCGGTGT............................................................................	27	3	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................TGTGTCGCAGCAAGTTTCAT....	20	3	5	0.80	4	2	0	0	1	0	1
........................................AGATTCTCCAAGTGACCTAGTTGC...........................................................................................................................................................................................	24	0	4	0.50	2	2	0	0	0	0	0
.........................................GATTCTCCAAGTGAACTAGTTGCT..........................................................................................................................................................................................	24	1	4	0.25	1	1	0	0	0	0	0
.....................................CGAAGATTCTCCAAGTGACCTAGTT.............................................................................................................................................................................................	25	0	4	0.25	1	0	0	0	0	1	0
.....................................CGAAGATTCTCCAAGTGACCTAGTTGC...........................................................................................................................................................................................	27	0	4	0.25	1	1	0	0	0	0	0
........................................AGATTCTCCAAGTGAACTAGTTGC...........................................................................................................................................................................................	24	1	4	0.25	1	1	0	0	0	0	0
........................................AGATTCTCCAAGTGACCTAGTTGCT..........................................................................................................................................................................................	25	0	4	0.25	1	1	0	0	0	0	0
.........................................GAGTCTCCAAGTGAACTAGTTGCT..........................................................................................................................................................................................	24	2	4	0.25	1	1	0	0	0	0	0
....................................CCGAAGATTCTCCAAGTGAA...................................................................................................................................................................................................	20	1	4	0.25	1	1	0	0	0	0	0
...............................................................................AACCAGAAGCTAGGCGTAAT........................................................................................................................................................	20	3	7	0.14	1	0	0	0	1	0	0
.............................................CTCCAAGTGACCTAGTTGCT..........................................................................................................................................................................................	20	0	10	0.10	1	1	0	0	0	0	0
........................................................................................................................ATCACCTAGCAAGACTCAT................................................................................................................	19	3	16	0.06	1	1	0	0	0	0	0
..............................................................................................................................................................................................................AAAACGCTATGCACTGATT..........................	19	3	16	0.06	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
dp5	Unknown_group_20:4287-4537 +	dps_1852	CAGCAGTTTTTTTATTTCTCGCGACGGCTGCTAAGAGGCTTCTAAGAGGTTCACTGGATCAACGAT--AGATGTTGGAGAATTGATCTTCGATCCGCCCTACTACAAACATAACTGATTCATTAATGGATGGTACTGAGTACTATC--------CATTAGCTGATCCTATCTTTAATAAGCCACAAAAAGGCGATTTGTTATTAGTTCTAGACGCCTTTTTCGATACGTGGCTACGGACCCAGCGGCGCTCAAAGTATCAC
droPer2	scaffold_66:151148-151400 +		CAGCAGTTTTTTTATTTCTCGCGACGGCTGCTAAGAGGCTTCTAAGAGGTTCACTGGATCAACGATTTTGATGTTGGAGAATTGATCTTCGATCCGCCCTACTACAAACATAACTGATTCATTAATGGATGGTACTGAGTACTATC--------CATTAGCTGATCCTATCTTTAATAAGCCACAAAAAGGCGATTTGTTATTAGTTCCAGACGCCTTTTTCGATACGTGGCTACGGACCCAGCGGCGCTAAAAGTATCAC
droVir3	scaffold_12805:146016-146060 +		------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCTGATCCTGCGTTCAACAAACCACAGCGAGTGGATCTCTTA------------------------------------------------------------
droMoj3	scaffold_6501:139122-139213 -		G----------------------------------------------------------------------------------------------------------------------------------GTACCTGATAATGTA-------CAATTAGCTGATCCTCAATTCCTCAAGCCGCAACGTATTGATTTGTTGCTCGGTGCTGATATCTTTTTTGATATAT--------------------------------
droAna3	scaffold_13228:205399-205447 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCAGCTACAAAAAGGTAAGCTGTATATGGTTGCAGATGCACTTTTC---------------------------------------
droKik1	scf7180000301593:26734-26802 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGCAGACCCTCGTTTTCACAAGCCCGCAAAAGTGGACTTGCTGATTGGCGCAGAATCCTTTTTTGA-------------------------------------
droFic1	scf7180000454091:343-497 -		G---------------------------------------------------------------------ATTTTTGGGTATTAAGCTCCATTTCATCATATCAACCAGATAATGAAGTCAATTGTGCACAGTGGAAAATTCCAGCAAATATTGAATTAGCGGACCCTCGTTTTCACAAGCCCGCAAAAGTAGACTTACTAATTGGGGCAGAATCCTTTTTCGA-------------------------------------
droRho1	scf7180000779104:8268-8336 +		------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCGGACCCTCCATTTTACAAGTCCGCAAAAGTGGACTTATTAATCGGCGCAGAATCCTTTTTCGAT------------------------------------
droEug1	scf7180000409719:25762-25826 -		C---------------------------------------------------------------------------------------------CGCCCCACTACAACAATACCATATCCCTTACTATATGGTTTTGGGAAGAATC--------CATAACCTGTTC-----------------------------------------------------------------------------------------------
droYak3	v2_chrUn_534:61304-61373 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGCAGACCCCCGCTTTCACAAGCCCGCAAAAGTGGACTTACTGATTGGCGCAGAATCCTTTTTCGAT------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

CAGCAGTTTTTTTATTTCTCGCGACGGCTGCTAAGAGGCTTCTAAGAGGTTCACTGGATCAACGAT--AGATGTTGGAGAATTGATCTTCGATCCGCCCTACTACAAACATAACTGATTCATTAATGGATGGTACTGAGTACTATC--------CATTAGCTGATCCTATCTTTAATAAGCCACAAAAAGGCGATTTGTTATTAGTTCTAGACGCCTTTTTCGATACGTGGCTACGGACCCAGCGGCGCTCAAAGTATCAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................ACTGAGTACTATC--------CATTAGCTGATCC..............................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................CTGGATCAACGAT--AGATGTTGGAGA.....................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTCGATACGTGGCTACGGACC.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TACAAACATAACTGATTCATTAATGGA....................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................ACTACAAACATAACTGATTCATTAA........................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TGGAGAATTGATCTTCGATCCGCCC..................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAGCAGTTTTTTTATTTCTCGCGACGGCTGCTAAGAGGCTTCTAAGAGGTTCACTGGATCAACGATTTTGATGTTGGAGAATTGATCTTCGATCCGCCCTACTACAAACATAACTGATTCATTAATGGATGGTACTGAGTACTATC--------CATTAGCTGATCCTATCTTTAATAAGCCACAAAAAGGCGATTTGTTATTAGTTCCAGACGCCTTTTTCGATACGTGGCTACGGACCCAGCGGCGCTAAAAGTATCAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................CACTGGATCAACGATTTTGATGTTGGA.......................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
...................................................CACTGGATCAACGATTTTGATGT...........................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0

droVir3

------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCTGATCCTGCGTTCAACAAACCACAGCGAGTGGATCTCTTA------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCGA........................................................................	24	16	0.50	8	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCGAGTG.....................................................................	27	12	0.42	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCG.........................................................................	23	18	0.28	5	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCGAG.......................................................................	25	16	0.19	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCGAGTGGA...................................................................	29	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCGAGT......................................................................	26	14	0.14	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TCCTGCGTTCAACAAACCACAGCGAGT......................................................................	27	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TGGCTGATCCTGCGTTCAACAAACCAC.............................................................................	27	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CTGCGTTCAACAAACCACAGCGAGTG.....................................................................	26	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCGAGTGT....................................................................	28	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGATCCTGCGTTCAACAAACCACAG...........................................................................	25	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGATCCTGCGTTCAACAAACCACC............................................................................	24	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAGCGAGTCA....................................................................	28	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CTGCGTTCAACAAACCACAGCGAG.......................................................................	24	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TCCTGCGTTCAACAAACCACAGC..........................................................................	23	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CCTGCGTTCAACAAACCACAG...........................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTTCAACAAACCACAGCGAGTGG....................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G----------------------------------------------------------------------------------------------------------------------------------GTACCTGATAATGTA-------CAATTAGCTGATCCTCAATTCCTCAAGCCGCAACGTATTGATTTGTTGCTCGGTGCTGATATCTTTTTTGATATAT--------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................TATTGATTTGTTGCTCGGTGC....................................................	21	20	0.40	8	6	0	0	0	2	0
.........................................................................................................................................................................................ACGTATTGATTTGTTGCTCGG.......................................................	21	20	0.20	4	4	0	0	0	0	0
...............................................................................................................................................................................................TGATTTGTTGCTCGGTGCTGA.................................................	21	20	0.15	3	3	0	0	0	0	0
.................................................................................................................................................A-------CAATTAGCTGATCCTCAATT........................................................................................	21	20	0.15	3	3	0	0	0	0	0
............................................................................................................................................................................................TATTGATTTGTTGCTCGGTGCTGAT................................................	25	20	0.15	3	3	0	0	0	0	0
................................................................................................................................................TA-------CAATTAGCTGATCCTCAAT.........................................................................................	21	20	0.15	3	2	0	1	0	0	0
....................................................................................................................................TACCTGATAATGTA-------CAATTAGCTGATCC..............................................................................................	28	20	0.15	3	2	0	0	0	1	0
.............................................................................................................................................................................................ATTGATTTGTTGCTCGGTGCT...................................................	21	20	0.10	2	0	0	1	1	0	0
............................................................................................................................................AATGTA-------CAATTAGCTGATCCT.............................................................................................	21	20	0.10	2	0	0	0	0	0	2
..........................................................................................................................................ATAATGTA-------CAATTAGCTGATCC..............................................................................................	22	20	0.10	2	1	0	0	0	1	0
.............................................................................................................................................ATGTA-------CAATTAGCTGATCCTC............................................................................................	21	20	0.10	2	0	0	0	2	0	0
............................................................................................................................................................................................TATTGATTTGTTGCTCGGTGCTG..................................................	23	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................GTACCTGATAATGTA-------CAATTAGCT...................................................................................................	24	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................................................TGATTTGTTGCTCGGTGCTG..................................................	20	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................GTA-------CAATTAGCTGATCCTCAA..........................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................CCTGATAATGTA-------CAATTAGCTGATCC..............................................................................................	26	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................TGATTTGTTGCTCGGTGCTGATAA..............................................	24	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................CTGATAATGTA-------CAATTAGCT...................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................GTACCTGATAATGTA-------CAATTAGCTGATC...............................................................................................	28	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................................ATTTGTTGCTCGGTGCTGA.................................................	19	20	0.05	1	0	0	0	1	0	0
............................................................................................................................................................................................TATTGATTTGTTGCTCGGTGCTGA.................................................	24	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................CAAGCCGCAACGTATTGATT.................................................................	20	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................CGTATTGATTTGTTGCTCGGTGCTGAT................................................	27	20	0.05	1	0	0	0	1	0	0
..............................................................................................................................................................................................TTGATTTGTTGCTCGGTGCTGT.................................................	22	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................GTACCTGATAATGTA-------CAATTAGCTG..................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................TAATGTA-------CAATTAGCTGATCCTCAAT.........................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................GTATTGATTTGTTGCTCGGTGCTGATA...............................................	27	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................TTGATTTGTTGCTCGGTGCTGATA...............................................	24	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................TGTTGCTCGGTGCTGATATCTTTTTTG......................................	27	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................GGTGCTGATATCTTTTTTGAA....................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................TGTA-------CAATTAGCTGATCCTCAA..........................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................CCTGATAATGTA-------CAATTAGCTGATCCA.............................................................................................	27	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................ATGTA-------CAATTAGCTGATCCTCAATTC.......................................................................................	26	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................................ATTTGTTGCTCGGTGCTGATA...............................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................ATAATGTA-------CAATTAGCTGATC...............................................................................................	21	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................CCTGATAATGTA-------CAATTAGCTGATCCTC............................................................................................	28	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................GTA-------CAATTAGCTGATCCTCAATTCC......................................................................................	25	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................ATTGATTTGTTGCTCGGTGCTTT.................................................	23	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................TGTA-------CAATTAGCTGATCCTCAATT........................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................ACCTGATAATGTA-------CAATTAG.....................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................ATGTA-------CAATTAGCTGATCCTCAATT........................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................GTACCTGATAATGTA-------CAATTAGCTGAAA...............................................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................TTGATTTGTTGCTCGGTGCTGAT................................................	23	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................AACGTATTGATTTGTTGCTCGGTGT....................................................	25	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................GTATTGATTTGTTGCTCGGTGCTGATATC.............................................	29	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................CGTATTGATTTGTTGCTCGGT......................................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................AATTAGCTGATCCTCAATT........................................................................................	19	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................TACCTGATAATGTA-------CAATTAGCTG..................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................TTGTTGCTCGGTGCTGATAT..............................................	20	20	0.05	1	0	0	0	1	0	0
..............................................................................................................................................TGTA-------CAATTAGCTGATCCTCAAT.........................................................................................	23	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................GATTTGTTGCTCGGTGCTG..................................................	19	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................CCTGATAATGTA-------CAATTAGCT...................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................TGCTCGGTGCTGATATCTTTTTTGAT....................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................ACGTATTGATTTGTTGCTCGGT......................................................	22	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................GATTTGTTGCTCGGTGCTGAT................................................	21	20	0.05	1	0	0	0	1	0	0
........................................................................................................................................................................................AACGTATTGATTTGTTGCTCGG.......................................................	22	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................ATGTA-------CAATTAGCTGATCC..............................................................................................	19	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................ATTGATTTGTTGCTCGGTGCTGATC...............................................	25	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................ATTTGTTGCTCGGTGCTGT.................................................	19	20	0.05	1	0	0	1	0	0	0

droAna3

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCAGCTACAAAAAGGTAAGCTGTATATGGTTGCAGATGCACTTTTC---------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................AATCAGCTACAAAAAGGTAAGCT................................................................	23	1	1.00	1	1	0	0	0	0	0

droKik1

-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGCAGACCCTCGTTTTCACAAGCCCGCAAAAGTGGACTTGCTGATTGGCGCAGAATCCTTTTTTGA-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G---------------------------------------------------------------------ATTTTTGGGTATTAAGCTCCATTTCATCATATCAACCAGATAATGAAGTCAATTGTGCACAGTGGAAAATTCCAGCAAATATTGAATTAGCGGACCCTCGTTTTCACAAGCCCGCAAAAGTAGACTTACTAATTGGGGCAGAATCCTTTTTCGA-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCGGACCCTCCATTTTACAAGTCCGCAAAAGTGGACTTATTAATCGGCGCAGAATCCTTTTTCGAT------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

C---------------------------------------------------------------------------------------------CGCCCCACTACAACAATACCATATCCCTTACTATATGGTTTTGGGAAGAATC--------CATAACCTGTTC-----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

-----------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGCAGACCCCCGCTTTCACAAGCCCGCAAAAGTGGACTTACTGATTGGCGCAGAATCCTTTTTCGAT------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................TGGCAGACCCCCGCTTTCACAAGCC...............................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CGCTTTCACAAGCCCGCAAAAGTGGACT.................................................................	28	11	0.18	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTCACAAGCCCGCAAAAGTGGACT.................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................TTCACAAGCCCGCAAAAGTGGACT.................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TACTGATTGGCGCAGAATCCTTTTT........................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AAGTGGACTTACTGATTGGCGCAGAA................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTTACTGATTGGCGCAGAATCCTTTTT........................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TTCACAAGCCCGCAAAAGTGGACC.................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AAAGTGGACTTACTGATTGGCGCAGAA................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCACAAGCCCGCAAAAGTGGACT.................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCAAAAGTGGACTTACTGATTGGCGC....................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

dps_1852

Unknown_group_20:4337-4487 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.7	-27.7	-27.6