ID:

dps_1797

 Coordinate:

Unknown_group_141:5788-6031 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -11.5 -11.3

Flybase annnotation

CDS [Dpse\GA23257-cds]; CDS [Dpse\GA23257-cds]; exon [dpse_GLEANR_11855:2]; exon [dpse_GLEANR_11855:1]; intron [Dpse\GA23257-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACAACACGTAACGCGGGAGAGTCGCTCCGCAGAATTGAATTCCGGCGAAGTAAACATGCTGCATAACCTCCATTTCTTCGCGACTGATCCTTTCGCAGTCATTTTTGACGAATTTCATATGCGTTGGGGTTGGCACGGAGTATGGAAGGTGCTGGTTATCGCGGCCTTCAATATGGATGGGAGTAATTTCCATTAGCTCCATATTAAATTGGTAAGTGTTCTATAAATTTTTATATTTAAATTTTTTTAAATTTTTTTTTCTATATATATTAATACATTCTATTTTCCCACAGAGCTTGGTCACGGACAAAGTGATGGGGAACACGGAGATCAACGATGGATT
************************************************************........(((((......((((..(((....(((((((......))).))))..)))..)))).)))))********************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 M022
male body		 M062
head
 SRR902010
ovaries
 GSM444067
head
 GSM343916
embryo
............................................................TGCATAACCTCCATTTCTTCGCGAC................................................................................................................................................................................................................................................................... 25 0 1 7.00 7 7 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TACATTCTATTTTCCCACAGAGCT.............................................. 24 0 1 6.00 6 2 4 0 0 0 0 0 0
............................................................TGCATAACCTCCATTTCTTCGCGACT.................................................................................................................................................................................................................................................................. 26 0 1 4.00 4 3 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................TAATACATTCTATTTTCCCACAGAGC............................................... 26 0 1 4.00 4 1 2 0 0 0 0 1 0
..........................................................................................................TGACGAATTTCATATGCGTTGGGG...................................................................................................................................................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0 0
.............................................................................................................................................TATGGAAGGTGCTGGTTATCGCGG................................................................................................................................................................................... 24 0 1 3.00 3 1 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CACGGACAAAGTGATGGGGAACACGG................ 26 0 1 3.00 3 0 0 3 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TGGTCACGGACAAAGTGATGGGGAAC.................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CTTGGTCACGGACAAAGTGATGG......................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................TCTTCGCGACTGATCCTTTCTC....................................................................................................................................................................................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGG....................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TATTAATACATTCTATTTTCCCACAGAGC............................................... 29 0 1 2.00 2 0 0 2 0 0 0 0 0
..........................................................................................................TGACGAATTTCATATGCGTTGGG....................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................TGCTGCATAACCTCCATTTCTTCGCGAC................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGGAACACGG................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TTAATACATTCTATTTTCCCACAGAGCT.............................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAATTGGTAAGTGTTCTATAAATT.................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................TGACGAATTTCATATGCGTTGG........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................CTTCGCGACTGATCCTTTCGCAG..................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................TGACGAATTTCATATGCGTTGGGGA..................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................TTCTTCGCGACTGATCCTTTCGCAG..................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TAATACATTCTATTTTCCCAGAGC................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................TATGGAAGGTGCTGGTTATCGCG.................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................TTTTTGACGAATTTCATATGCGTTGGG....................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TACATTCTATTTTCCCACAGAGCTTG............................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TACATTCTATTTTCCCACAGAGC............................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGGAACACGGA............... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................ATCGCGGCCTTCAATATGGATGGGA................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
TACAACACGTAACGCGGGAG.................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................TGCTGCATAACCTCCATTTCTTCGCGACC.................................................................................................................................................................................................................................................................. 29 1 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................AACACGGAGATCAACGATGGATT 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.ACAACACGTAACGCGGGAGAG.................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................TGACGAATTTCATATGCGTTGGGGAA.................................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................TGACGAATTTCGTATGCGTTGGGGA..................................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CACGGACAAAGTGATGGGGA...................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................TATGGAAGGTGCTGGTTATCGC..................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................TATGGAAGGTGCTGGTTATCGCGGCCT................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TGATGGGGAACACGGAGATCAACGT...... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
TACAACACGTAACGCGGGAGAGTCGCTCC........................................................................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................TCATTTTTGACGAATTTCATATGCGT........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................ATACATTCTATTTTCCCACAGAG................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................GCATAACCTCCATTTCTTCGCGACT.................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................TGCGTTGGGGATGGCACGGAGTATGG...................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................GTGCATAACCTCCATTTCTTCGCGAC................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGGAACA................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................TTTTTGACGAATTTCATATGCGT........................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................TATCGCGGCCTTCAATATGGATGGG.................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTGGTCACGGACAAAGTGATG.......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................CGAATTTCATATGCGTTGGG....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................GTCACGGACAAAGTGATGGGGAACACGG................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0
...AACACGTAACGCTGGAGAGTC................................................................................................................................................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................GGAAGGTGCTGGTTATCGCGGCCTT............................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................TGGCACGGAGTATGGAAGGTG................................................................................................................................................................................................ 21 0 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................................CCAGTCATTTTTGAAGAA....................................................................................................................................................................................................................................... 18 2 7 0.29 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GATTCGTCACGGTCAAAGT.............................. 19 3 11 0.27 3 3 0 0 0 0 0 0 0
........................GCTCAGCGAAATTGAATTCC............................................................................................................................................................................................................................................................................................................ 20 3 20 0.20 4 4 0 0 0 0 0 0 0
....TTACGAAACGCGGGAGAGTC................................................................................................................................................................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0 0 0
.................................................................................................................................................CAACGTGCTGGTTTTCGCG.................................................................................................................................................................................... 19 3 14 0.14 2 2 0 0 0 0 0 0 0
................................................................................................CAGTCATTTTTGAAGAAG...................................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0 0 0 0
.....................................................................................................................ATATGCGCTGGTGTTGGTAC............................................................................................................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GGACTAAGAGATGGGGAA..................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0
...........................................................................................................................................ATTACGGAAGGTGGTGGTT.......................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAATTGCGAAGTGGTCTA........................................................................................................................ 19 3 17 0.06 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATAGATAAATTTTTTTAAATT.......................................................................................... 21 2 19 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................TATCACAGTCATCTTTGAC.......................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................ATTAAATTGGTACGTGAGC.......................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................CAGTCATTTTTGAAGAAGG..................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATGTTGTGCATTGCGCCCTCTCAGCGAGGCGTCTTAACTTAAGGCCGCTTCATTTGTACGACGTATTGGAGGTAAAGAAGCGCTGACTAGGAAAGCGTCAGTAAAAACTGCTTAAAGTATACGCAACCCCAACCGTGCCTCATACCTTCCACGACCAATAGCGCCGGAAGTTATACCTACCCTCATTAAAGGTAATCGAGGTATAATTTAACCATTCACAAGATATTTAAAAATATAAATTTAAAAAAATTTAAAAAAAAAGATATATATAATTATGTAAGATAAAAGGGTGTCTCGAACCAGTGCCTGTTTCACTACCCCTTGTGCCTCTAGTTGCTACCTAA
**********************************************************************************************************************************************************************************************************************........(((((......((((..(((....(((((((......))).))))..)))..)))).)))))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 V112
male body		 SRR902010
ovaries
 GSM444067
head
 GSM343916
embryo
............................................................................................................................................................................................................................................................................................................................ACCCCTTGTGCCTCTAGTTGCTACCT.. 26 0 1 5.00 5 0 4 1 0 0 0
....................................................................GAGGTAAAGAAGCGCTGACTAGGAA........................................................................................................................................................................................................................................................... 25 0 1 4.00 4 4 0 0 0 0 0
.............................................................CGTATTGGAGGTAAAGAAGCGCTGAC................................................................................................................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................GCGTCAGTAAAAACTGCTTAAAGTAT................................................................................................................................................................................................................................ 26 0 1 3.00 3 3 0 0 0 0 0
.............................................................................................AGCGTCAGTAAAAACTGCTTAAAGTAT................................................................................................................................................................................................................................ 27 0 1 3.00 3 3 0 0 0 0 0
..........................................GGCCGCTTCGTTTGTACGACG......................................................................................................................................................................................................................................................................................... 21 1 1 3.00 3 0 0 0 3 0 0
...................................................................................................................................................................................................................................................................................................GTCTCGAACCAGTGCCTGTTT................................ 21 0 1 2.00 2 0 2 0 0 0 0
..................................................................TGGAGGTAAAGAAGCGCTGACT................................................................................................................................................................................................................................................................ 22 0 1 2.00 2 1 1 0 0 0 0
.......................................................................................................................................................................................CATTAAAGGTAATCGAGGTATAAT......................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0
.........................................................................................................................................................................................................TATAATTTAACCATTCACAAGATAT...................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACTACCCCTTGTGCCTCTAGTTG........ 23 0 1 2.00 2 0 2 0 0 0 0
..........................................................................................................................................................................................................................................................................ATATAATTATGTAAGATAAAAGGGT..................................................... 25 0 1 2.00 2 1 0 1 0 0 0
..............................................................................................GCGTCAGTAAAAACTGCTTAAA.................................................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................................................................................................GGTGTCTCGAACCAGTGCCTGTTT................................ 24 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................CATACCTTCCACGACCAATAGCG..................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................AGCGTCAGTAAAAACTGCTTAAAGT.................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AAAAGGGTGTCTCGAACCAGTGCCTGT.................................. 27 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................CGAGGTATAATTTAACCATTCACAAG.......................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................ATATAATTATGTAAGATAAAAGGGTGT................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................GGCCGCTTCATTTGTACGACGTATT..................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................GTAAGATAAAAGGGTGTCTCGAACC........................................... 25 0 1 1.00 1 1 0 0 0 0 0
...................................AACTTAAGGCCGCTTTATTTGTACGA........................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.............CGCCCTCTCAGCGAGGCGTCTTAAC.................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................GGAGGTAAAGAAGCGCTGACT................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GGGTGTCTCGAACCAGTGCCTGT.................................. 23 0 1 1.00 1 0 1 0 0 0 0
...................................................................GGAGGTAAAGAAGCGCTGACTAGGAA........................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TCAGTAAAAACTGCTTAAAGTAT................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................CGTCAGTAAAAACTGCTTAAAGTAT................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................ATTGGTGTCTCGAACCAGTGCCTGTT................................. 26 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................GGGTGTCTCGAACCAGTGCCTG................................... 22 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................ATACGCAACCCCAACCGTGCCTCAT......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................AAAGCGTCAGTAAAAACTGCTTAAAGT.................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GGGTGTCTCGAACCAGTGCCTGTTT................................ 25 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................AGGGTGTCTCGAACCAGTGCCTGT.................................. 24 0 1 1.00 1 0 1 0 0 0 0
...........................................GCCGCTTCATTTGTACGACGTATTGGA.................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................TATGTAAGATAAATGGGT..................................................... 18 1 1 1.00 1 0 0 0 0 1 0
...........................................GCCGCTTTATTTGTACGACGTATTGGAG................................................................................................................................................................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................ATATATAATTATGTAAGATAAAAGGGT..................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................CGAGGTATAATTTAACCATTCACAAGA......................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
................................CTTAACTTAAGGCCGCTTCATTTGT............................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................CATTAAAGGTAATCGAGGTATAATTT....................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................CTACCCCTTGTGCCTCTAGTTGCTA..... 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................ATAATTATGTAAGATAAAAGGGTGT................................................... 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AAAGGGTGTCTCGAACCAGTGCCTGT.................................. 26 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACTACCCCTTGTGCCTCTAGTT......... 22 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................GGAAAGCGTCAGTAAAAACTGCTTAAAG................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................AAAAGATATATATAATTATGTAAGATA............................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................CGTGCCTCATACCTTCCACGACCAAT......................................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................................................TATACCTACCCTCATTAAAGGTAAT.................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0
................................................................................CGCTGACTAGGAAGGCGTC..................................................................................................................................................................................................................................................... 19 1 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................................................................................TAATTTTACCATTGAGAAGAT........................................................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0
..................................................................................................................AAGTATACTCAACTCCAAC................................................................................................................................................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................AAAAAAAAGATACAGATAAT....................................................................... 20 2 16 0.06 1 0 1 0 0 0 0
.....................................................................AGATAAAGAAGGGCTGATT................................................................................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................TATGTGAGATAAACGGGTA.................................................... 19 3 20 0.05 1 0 0 0 0 0 1
....................................................TTTTTACGTCGTATTGGA.................................................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_141:5738-6081 + dps_1797 TACA--ACA-CGTAACGCGGGAGAGTCGCTCCGCAGAATTGAATTCCGGCGAAGTAAACATGCTGCATAACCTCCATTTCTTCGCGACTGATCCTTTCGCAGTCA--TTTTTGA--CGAATTTCATATGCGTTGGGGTTGGCACGGAGTATGGAAGGTGCTGGTTATCGCGGCCTTCAATATGGATGGGAG--TAATTTC-------------------CATTAG---------------------------------CTCCATATTAAATTGGTAAGTGTT---------CT---------ATAA--ATTTTTATATTTAAATTTTTT--TAAA-TTTTT--TTTTCTATATATA--------------T--TA-ATACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGCTTGG--TCACGGACAAAGTGATGGGGAACACGGAGATCAACGATGG----------ATT
droPer2 scaffold_2:1863636-1863935 - TACA--ACA-CGTAACGCGGGAGAGTCGCTCCGCAGAATTGAATTCCGGCGAAGTAAACATGCTGCATAACCTCCATTTCTTCGCGACTGATCCTTTCGCAGTCA--TTTTTGA--CGAATTTCATATGCGTTGGGGTTGGCACGGAGTATGGAAGGTGCTGGTTATCGCGGCCTTCAATATGGATGGGAG--TAATTTC-------------------CATTAG---------------------------------CTCCATATTAAATTGGTAAGTGTT---------CT---------ATAA--ATTTGTATATTTAAATTTAAA--AAAA-TTTTT-TTTTTCTATATATA--------------T--TA-ATACATTCTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGATGG----------ATT
droWil2 scf2_1100000004585:1048047-1048165 - TAAA--AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAAATTTATATTTTTA--T-AATTTTTT--TTTTTTATATAAA--------------TCACAAA-TGATTTTTTTTTTTCAATAATAACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------GGAAAAAATAAAAATCAAAA-----------ATAAAT
droVir3 scaffold_12936:389364-389500 - GTAA--TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATGAAATTATTAATTAAA---------TT---------ATTA--TTTTTCAAATATACATTTAAT--AAAT-TTTTT-TTTTATTGTATTAT--------------T--TT-TGTTGTTCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGAGGAG---------ACCA
droMoj3 scaffold_6393:35976-36102 - TAGTTATCT---AT------------------------------------------------------------------------------------------AAATTT--GAGAAAT--TTTATT-----------------------------------------------------------------------------------------------------------------------------------------------TTT------------------------------------TTTTTTGTTTTATTTTTTTT--T-ATTTTTAT--TTTTTTATTTATT--------------T--TA-TTTTATTTTTTTTTT----------------------------------------------------------------------------------------T--------------------T---ATATA-TGATG-------------------------T-----------ACTTAATAACGATAAATTGAT
droGri2 scaffold_14853:5472586-5472715 + CCTT--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGATGGCAGCATACATTCTATCTAC------------ATATAC---------------------------------AT----------CTATATAATGTA---------CTTCTGTGTATATAT--ATATATATATGTTTATATATA--TATA-TTT----ATATGTTTATATA--------------T--TT-ATATAT-----------------------------------------------------------------------------------------------ATAT--------------------------------------------------------------------------------------ATATAT
droAna3 scaffold_12947:281121-281222 + CTTT--AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTACCGGTA--TAAATTC-------------------GACTAA-------------------------------------------------TT--GGTG---------CT---------AAAA--ATAATTTTATTAAAAATTCTT--A-ATTTTAAT--TTATGTATACAAA--------------T--TA-ATACAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------TTT
droBip1 scf7180000394449:417-550 + TATT--ATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATAAAATTT---------TA---------A------TTATTAAATTTATTTTATTT--T-ATTTTTTT--ATTTTTATTTTTA--------------TGTT--------------------------------------------------------------------------------------------T----TTTATTTAGTT-----------TTT----TTAA---AAA-AAGTTAG--TACTAAATAAAGTTAT------TTAAAAAATTAATAATAA----------ATT
droKik1 scf7180000302659:37818-37964 + ATAT--CGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTA----------------T---------TTAA--TTTTTTTTTCTTAAATTTTTT--TGTA-TTTTT--TATTTTAAA------------------------------------GGCTCAATATCTTAGGAA------------------------------------------------------------T-ATTGTGTTCAAGTT----T-------------TACA---TCG-ATCATAGGAAAATTGACGAAGTTATGCAGAGT----TGAACAAAGGTCG----------GTT
droFic1 scf7180000454040:43471-43538 - AATT--TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-GGTT---------TT---------AAAA--TTTTTT-------------------------------TTTTACATTTT--------------T--TT-TTATTTTTTTTTC---------------------------------------------------------------------------------------------------------------T--------------------------------------------------GAATGATCA-------ATATGT
droEle1 scf7180000491296:11802-11922 - AACT--CTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAATTTTAAAAATGTT---------TG---------AAAA--ATTTTTAAAAAAATATTTAAA--AAAA-TTTTT--TTTTTGATATTGT--------------T--TT-TAATTT--------------------------------------------------------------------------------------------------------TTAAGACATTTTTTT---GTATA-TAGTTA------------------------------------AATTATGA----------ACA
droRho1 scf7180000776821:2984-3108 + TTCA--ATTT-TTAT--------------------GTGAACAAT----------------------------------------------------------------------------------------------------------------------------------------------CAATA--TTTACTC------------------------------------------GCCCAACTTAATTATC-----------------------------------ACTATTATTATGAATATTTATATATATATTTATATT--T-ATTTATAT--ATTTTTATTTATA--------------TGTA--------------------------------------------------------------------------------------------T----ATATTTAT-------------------------------------------------------------------------------AT----------TTT
droBia1 scf7180000300217:248-467 + TCTG--CGG---------------------------CATTGAATTCTCAACAATTAGACATTAATAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------CCCA-AATTTTG-TTTG--T-AATCTCTC--TTTTCACTATTTAACTAATCGACGTAGCCGGCAC-TGCTGTTCATGGCCTAATATCTCGAGCGTTGGATAGTGGTGGTCGATATCGAATATTCGATTGCAATAAAACCTTTTGCTAATAATATTT----------TAGTTTA-TTTAAACTTTTTTTT---AAAT--------------------------------------------------AT----------TTA
droTak1 scf7180000412777:20630-20794 + GCCA--TCA---AT------------------------------------------------------------------------------------------TGCTTT--GGAGCAG--TTTGGCT--------------------------------------------------------------G-----------TTATCAATAAAATAGTAAATTAACAACAAAATAGTATTTTACCCGATAAA-----------------------------------------------------A---TTGTTGTTTTTAAAATTTTT--TAAA-ACTAT--TTTTATTTTTTAT--------------T--TA-ATTTGTTATATTAAT----------------------------------------------------------------------------------------T--------------------T---ATATG-G------------------------------------AAGTTATTTATAG----------ACA
droEug1 scf7180000409537:24794-24912 + TCTA--ATGT-GAA------------------------------------------------------------------------------------------------------TGCAATTCAGTT--------------------------------------------------------------A--AAATTTT-------------------TATTTT---------------------------------TTTCACATTAAATAAGTAAGTAAG---------TT---------AATA--ATTAGCGGATGA-CATTAATT--CAAA-ACTTT-GAATCATATATATA--------------T--TG-TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT
dm3 chrX:21918241-21918332 + TATT--TTAT---------------------------TTCAAAT----------------------------------------------------------------------------------------------------------------------------------------------CAATG--ATGAGTC------------------------------------------GG------------------------------------AAATATAAATTT--------------------TAAA-AATAATT-TTTT--T-TATTTTTT--TTTTTTATATAAA--------------A--TA----TAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------TTT
droSim2 2r:48300-48385 + ATAT--TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATTATATATT---------AT---------ATAA--ATTTGTATATATATTTATATA--TATA-TTTAT--ATTTTGATACGT------------------T--------------------------------------------------------------------------------------------T----TTAGTTTTGTC----------------------------------------------------------------------------TT----------TCC
droSec2 scaffold_6:1099902-1099986 + TATT--TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTAATGTT---------TC---------ATTT--TTTTTTGTTTATTCATTTTTTTATTTA-TTT----AGTTGCTTATTTA--------------T--TT-ATTTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------TTT
droYak3 chr2h:429197-429306 + TCTT--AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ATATTATTTTTACAACTGTTT--A-AAATTTTT--TTTTTTATATTAC--------------T--TA-AATTAATTTATTTA----------------------------------------------------------------------------------------TTTTCCATTTGAGTACTTTTTTT---AGAAC-TAAGTA------------------------------------AA-------------GTGGGA
droEre2 scaffold_4770:12071041-12071177 - GTAA--TCA-CGAT------------------------------------------------------------------------------------------C--TTTTTGC--CGAATCGCTAT-------------------------------------------------------------------------------------AATGTTAAATTGG---------------------------------TTCCATTTTATCTGGGTTCATGTA---------CT---------ATAA--TTATTTCTATTTAAGATTTAA--ATAT-TTTTTTTAATTCTCAATATT-----------------TA-ATTCTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGA----------ATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TACA--ACA-CGTAACGCGGGAGAGTCGCTCCGCAGAATTGAATTCCGGCGAAGTAAACATGCTGCATAACCTCCATTTCTTCGCGACTGATCCTTTCGCAGTCA--TTTTTGA--CGAATTTCATATGCGTTGGGGTTGGCACGGAGTATGGAAGGTGCTGGTTATCGCGGCCTTCAATATGGATGGGAG--TAATTTC-------------------CATTAG---------------------------------CTCCATATTAAATTGGTAAGTGTT---------CT---------ATAA--ATTTTTATATTTAAATTTTTT--TAAA-TTTTT--TTTTCTATATATA--------------T--TA-ATACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGCTTGG--TCACGGACAAAGTGATGGGGAACACGGAGATCAACGATGG----------ATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................TGCATAACCTCCATTTCTTCGCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070700000000
.........................................................................................................................................................................................................................................................................................................................................................................................TACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGCT..........................................................2416.0060200004000
...............................................................TGCATAACCTCCATTTCTTCGCGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0041300000000
.....................................................................................................................................................................................................................................................................................................................................................................................TA-ATACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGC...........................................................2614.0040100012000
...............................................................................................................TGA--CGAATTTCATATGCGTTGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040400000000
....................................................................................................................................................TATGGAAGGTGCTGGTTATCGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030100002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGACAAAGTGATGGGGAACACGG..........................2613.0030000000030
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG--TCACGGACAAAGTGATGGGGAAC..............................2612.0020000000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGG--TCACGGACAAAGTGATGG...................................2312.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGG.................................2012.0020100001000
..................................................................................................................................................................................................................................................................................................................................................................TA--------------T--TA-ATACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGC...........................................................2912.0020000000020
...............................................................................................................TGA--CGAATTTCATATGCGTTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
............................................................TGCTGCATAACCTCCATTTCTTCGCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGGAACACGG..........................2711.0010000000010
..................................................................................................................................................................................................................................................................................................................................................................................T--TA-ATACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGCT..........................................................2811.0010100000000
..........................................................................................................................................................................................................................................................................TAAATTGGTAAGTGTT---------CT---------ATAA--ATT......................................................................................................................................................................................................................................................................2511.0010000001000
...............................................................................................................TGA--CGAATTTCATATGCGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
...............................................................................CTTCGCGACTGATCCTTTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................................TGA--CGAATTTCATATGCGTTGGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................TTCTTCGCGACTGATCCTTTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................................................................TATGGAAGGTGCTGGTTATCGCG..................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
...........................................................................................................TTTTTGA--CGAATTTCATATGCGTTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGCTTG........................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AGC...........................................................2311.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGGAACACGGA.........................2811.0010000001000
.....................................................................................................................................................................ATCGCGGCCTTCAATATGGATGGGA...............................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
TACA--ACA-CGTAACGCGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................................................TGCTGCATAACCTCCATTTCTTCGCGACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGGAGATCAACGATGG----------ATT2311.0010100000000
.ACA--ACA-CGTAACGCGGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................TGA--CGAATTTCATATGCGTTGGGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGACAAAGTGATGGGGA................................2011.0010000001000
....................................................................................................................................................TATGGAAGGTGCTGGTTATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................TATGGAAGGTGCTGGTTATCGCGGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGGGAACACGGAGATCAACGT................2511.0010000001000
TACA--ACA-CGTAACGCGGGAGAGTCGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
......................................................................................................TCA--TTTTTGA--CGAATTTCATATGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................ATACATTCTATTTT--------------------------------------------------------------------------------------------------------------CCCA---CAG-AG............................................................2311.0010100000000
................................................................GCATAACCTCCATTTCTTCGCGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGACAAAGTGATGGGGAACA.............................2411.0010000000010
...........................................................................................................TTTTTGA--CGAATTTCATATGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
....................................................................................................................................................................TATCGCGGCCTTCAATATGGATGGG................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG--TCACGGACAAAGTGATG....................................2111.0010000001000
....................................................................................................................CGAATTTCATATGCGTTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TCACGGACAAAGTGATGGGGAACACGG..........................2811.0010000000010
.......................................................................................................................................................GGAAGGTGCTGGTTATCGCGGCCTT.............................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
..........................................................................................................................................TGGCACGGAGTATGGAAGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000001000
droPer2
TACA--ACA-CGTAACGCGGGAGAGTCGCTCCGCAGAATTGAATTCCGGCGAAGTAAACATGCTGCATAACCTCCATTTCTTCGCGACTGATCCTTTCGCAGTCA--TTTTTGA--CGAATTTCATATGCGTTGGGGTTGGCACGGAGTATGGAAGGTGCTGGTTATCGCGGCCTTCAATATGGATGGGAG--TAATTTC-------------------CATTAG---------------------------------CTCCATATTAAATTGGTAAGTGTT---------CT---------ATAA--ATTTGTATATTTAAATTTAAA--AAAA-TTTTT-TTTTTCTATATATA--------------T--TA-ATACATTCTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGATGG----------ATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................TAACCTCCATTTCTTCGCGACTGATCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..............................................................................................................................................................................................................................................................................TTGGTAAGTGTT---------CT---------ATAA--ATTTGTATATT..............................................................................................................................................................................................................................................................2911.001010000
.........................................................................................................................TTCATATGCGTTGGGGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................TGCTGCATAACCTCCATTTCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................GTTGGGGTTGGCACGGAGTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000001
........................................................................................................................................................GAAGGTGCTGGTTATCGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
droWil2
TAAA--AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAAATTTATATTTTTA--T-AATTTTTT--TTTTTTATATAAA--------------TCACAAA-TGATTTTTTTTTTTCAATAATAACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------GGAAAAAATAAAAATCAAAA-----------ATAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................TTCAATAATAACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------G....................................2720.50100100
.......................................................................................................................................................................................................................................................................................................................................................................................................TCAATAATAACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------G....................................2620.50100010
...........................................................................................................................................................................................................................................................................................................................................................................................................TAATAACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------GGAAAGG..............................2840.25100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTGAG------------------------------------------------------------------------------------------------------------------------GGAAAAAATAAAAAT......................24200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------GG...................................21200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................AACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------GGAAAAAA.............................25200.05100100
..............................................................................................................................................................................................................................................................................................................................................................................................................TAACAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------GGA..................................21200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTATGGGTTGAG------------------------------------------------------------------------------------------------------------------------GGAAAAAAT............................24200.05101000
droVir3
GTAA--TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATGAAATTATTAATTAAA---------TT---------ATTA--TTTTTCAAATATACATTTAAT--AAAT-TTTTT-TTTTATTGTATTAT--------------T--TT-TGTTGTTCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGAGGAG---------ACCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGA.................272032.356470035000000000150000000000000597000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCA..................................26201.90380030000000000000000000001000030100000030000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGG................................28201.80360000700000000000000000001380020000000006000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGAG................28201.60320000101000000000000000000000000800022000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGC...................25201.503000000000000000000000000016000000000212000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCG..................26201.503000002000000000000000000000000000000150121000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCG....................24200.80160000000000000000000000001500000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CG....................................24200.75150000000000000000000000000012000000000003000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAG.................................26200.65130000000000000100000000000000000000120000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGG................................27200.5010000000100000300000000000000200010000102000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGGG...............................28200.357007000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACA.......................21200.306000000000000200000000000000000031000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------C.....................................23200.306000000000000000000000000003000000001020000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAG.................................27200.255000000000000000000000000000000000000050000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACC.....................23200.255000300000000200000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGAT................28200.204000000000000000000000000003000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-AAAGTA-------------------CGCAGGGA----ACACCGCGA.................26200.204000000000000000000000000000000000000400000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------......................................22200.153000000000000000000000000300000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA-------------------CGCAGGGA----ACACCGCGA.................21200.153000000001000000000000000000000000000020000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AAAGTA-------------------CGCAGGGA----ACACCGCGA.................24200.153000000000000000000000000001000000001001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACAC......................22200.153000000000000000000000000000000000000021000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAG.................................25200.102000000000000000000001000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---AGAAC-AAAGTA-------------------CGCAGG................................20200.102000000000000000000000002000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGGGA----..........................26200.102000000002000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA---AGAAC-AAAGTA-------------------CGCAGGGA----ACACC.....................27200.102000000000000000000000000000000100000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGC...................................24200.102000000000000000000000000000110000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGT..........................................................21200.102000000000000000000000000101000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGAGG...............29200.051000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------------CGCAGGGA----ACACCGCGAGGAG---------ACC.26200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTA-------------------CGCAGGGA----ACACCGCGA.................22200.051000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGTT................28200.051000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGT................................27200.051000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGA----ACACCGCGAGGAG---------AC..21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-AAAGTA-------------------CGCAGGGA----ACACC.....................21200.051000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGCT................28200.051000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------CGCAGGGA----ACACCGCGAGGAG---------ATA.25200.051000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------------CGCAGGGA----ACACCGCGAGGAG---------A...24200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAG.................................23200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTA-------------------CGCAGGGA----ACACCGCGA.................23200.051000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------CGCAGGGA----AC........................26200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AGAAC-AAAGTA-------------------CGCAGGGA----ACACC.....................26200.051000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-AAAGTA-------------------CGCAGGGA----ACACC.....................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCGT.................27200.051000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACCGCA..................26200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAAGTA-------------------......................................21200.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-AAAGTA-------------------CGCAGGGA----ACACCGCGAGG...............27200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCGAATTA------------------------------------------------------------------------------------------------------------TAA---AGAAC-AAA............................................................19200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-AAAGTA-------------------CGCAGGGA----ACACA.....................23200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTA-------------------CGCAGGGA----ACACCGCGAG................24200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
TAGTTATCT---AT------------------------------------------------------------------------------------------AAATTT--GAGAAAT--TTTATT-----------------------------------------------------------------------------------------------------------------------------------------------TTT------------------------------------TTTTTTGTTTTATTTTTTTT--T-ATTTTTAT--TTTTTTATTTATT--------------T--TA-TTTTATTTTTTTTTT----------------------------------------------------------------------------------------T--------------------T---ATATA-TGATG-------------------------T-----------ACTTAATAACGATAAATTGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCTT--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGATGGCAGCATACATTCTATCTAC------------ATATAC---------------------------------AT----------CTATATAATGTA---------CTTCTGTGTATATAT--ATATATATATGTTTATATATA--TATA-TTT----ATATGTTTATATA--------------T--TT-ATATAT-----------------------------------------------------------------------------------------------ATAT--------------------------------------------------------------------------------------ATATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CTTT--AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTACCGGTA--TAAATTC-------------------GACTAA-------------------------------------------------TT--GGTG---------CT---------AAAA--ATAATTTTATTAAAAATTCTT--A-ATTTTAAT--TTATGTATACAAA--------------T--TA-ATACAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------TTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................GTATACAAA--------------T--TA-ATACAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............2011.001010000
droBip1
TATT--ATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATAAAATTT---------TA---------A------TTATTAAATTTATTTTATTT--T-ATTTTTTT--ATTTTTATTTTTA--------------TGTT--------------------------------------------------------------------------------------------T----TTTATTTAGTT-----------TTT----TTAA---AAA-AAGTTAG--TACTAAATAAAGTTAT------TTAAAAAATTAATAATAA----------ATTSizeHit CountTotal NormTotal
No Reads
droKik1
ATAT--CGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTA----------------T---------TTAA--TTTTTTTTTCTTAAATTTTTT--TGTA-TTTTT--TATTTTAAA------------------------------------GGCTCAATATCTTAGGAA------------------------------------------------------------T-ATTGTGTTCAAGTT----T-------------TACA---TCG-ATCATAGGAAAATTGACGAAGTTATGCAGAGT----TGAACAAAGGTCG----------GTTSizeHit CountTotal NormTotal
No Reads
droFic1
AATT--TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-GGTT---------TT---------AAAA--TTTTTT-------------------------------TTTTACATTTT--------------T--TT-TTATTTTTTTTTC---------------------------------------------------------------------------------------------------------------T--------------------------------------------------GAATGATCA-------ATATGTSizeHit CountTotal NormTotal
No Reads
droEle1
AACT--CTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAATTTTAAAAATGTT---------TG---------AAAA--ATTTTTAAAAAAATATTTAAA--AAAA-TTTTT--TTTTTGATATTGT--------------T--TT-TAATTT--------------------------------------------------------------------------------------------------------TTAAGACATTTTTTT---GTATA-TAGTTA------------------------------------AATTATGA----------ACASizeHit CountTotal NormTotal
No Reads
droRho1
TTCA--ATTT-TTAT--------------------GTGAACAAT----------------------------------------------------------------------------------------------------------------------------------------------CAATA--TTTACTC------------------------------------------GCCCAACTTAATTATC-----------------------------------ACTATTATTATGAATATTTATATATATATTTATATT--T-ATTTATAT--ATTTTTATTTATA--------------TGTA--------------------------------------------------------------------------------------------T----ATATTTAT-------------------------------------------------------------------------------AT----------TTTSizeHit CountTotal NormTotal
No Reads
droBia1
TCTG--CGG---------------------------CATTGAATTCTCAACAATTAGACATTAATAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------CCCA-AATTTTG-TTTG--T-AATCTCTC--TTTTCACTATTTAACTAATCGACGTAGCCGGCAC-TGCTGTTCATGGCCTAATATCTCGAGCGTTGGATAGTGGTGGTCGATATCGAATATTCGATTGCAATAAAACCTTTTGCTAATAATATTT----------TAGTTTA-TTTAAACTTTTTTTT---AAAT--------------------------------------------------AT----------TTASizeHit CountTotal NormTotal
No Reads
droTak1
GCCA--TCA---AT------------------------------------------------------------------------------------------TGCTTT--GGAGCAG--TTTGGCT--------------------------------------------------------------G-----------TTATCAATAAAATAGTAAATTAACAACAAAATAGTATTTTACCCGATAAA-----------------------------------------------------A---TTGTTGTTTTTAAAATTTTT--TAAA-ACTAT--TTTTATTTTTTAT--------------T--TA-ATTTGTTATATTAAT----------------------------------------------------------------------------------------T--------------------T---ATATG-G------------------------------------AAGTTATTTATAG----------ACASizeHit CountTotal NormTotal
No Reads
droEug1
TCTA--ATGT-GAA------------------------------------------------------------------------------------------------------TGCAATTCAGTT--------------------------------------------------------------A--AAATTTT-------------------TATTTT---------------------------------TTTCACATTAAATAAGTAAGTAAG---------TT---------AATA--ATTAGCGGATGA-CATTAATT--CAAA-ACTTT-GAATCATATATATA--------------T--TG-TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATSizeHit CountTotal NormTotal
No Reads
dm3
TATT--TTAT---------------------------TTCAAAT----------------------------------------------------------------------------------------------------------------------------------------------CAATG--ATGAGTC------------------------------------------GG------------------------------------AAATATAAATTT--------------------TAAA-AATAATT-TTTT--T-TATTTTTT--TTTTTTATATAAA--------------A--TA----TAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------TTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................TATAAATTT--------------------TAAA-AATAATT-TTTT--T-TATTTTTT--T.....................................................................................................................................................................................................................................3411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ATAAATTT--------------------TAAA-AATAATT-TTTT--T-TATTTTTT--TTT...................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ATAATT-TTTT--T-TATTTTTT--TT....................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AATT-TTTT--T-TATTTTTT--TTTTT.................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................T--------------------TAAA-AATAATT-TTTT--T-T...............................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................T--------------------TAAA-AATAATT-TTTT--T-................................................................................................................................................................................................................................................1780.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................T-TTTT--T-TATTTTTT--TTTTTTAT..............................................................................................................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TAATT-TTTT--T-TATTTTTT--TT....................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AATT-TTTT--T-TATTTTTT--TTTT..................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TT-TTTT--T-TATTTTTT--TTTTTT................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ATT-TTTT--T-TATTTTTT--TTTTTT................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ATT-TTTT--T-TATTTTTT--TTTTT.................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TTTT--T-TATTTTTT--TTTTTT................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TT-TTTT--T-TATTTTTT--TTTTT.................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TT--T-TATTTTTT--TTTTTTAT..............................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TT-TTTT--T-TATTTTTT--TTTT..................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ATT-TTTT--T-TATTTTTT--TT....................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
ATAT--TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATTATATATT---------AT---------ATAA--ATTTGTATATATATTTATATA--TATA-TTTAT--ATTTTGATACGT------------------T--------------------------------------------------------------------------------------------T----TTAGTTTTGTC----------------------------------------------------------------------------TT----------TCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TATT--TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTAATGTT---------TC---------ATTT--TTTTTTGTTTATTCATTTTTTTATTTA-TTT----AGTTGCTTATTTA--------------T--TT-ATTTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------TTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCTT--AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ATATTATTTTTACAACTGTTT--A-AAATTTTT--TTTTTTATATTAC--------------T--TA-AATTAATTTATTTA----------------------------------------------------------------------------------------TTTTCCATTTGAGTACTTTTTTT---AGAAC-TAAGTA------------------------------------AA-------------GTGGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTAA--TCA-CGAT------------------------------------------------------------------------------------------C--TTTTTGC--CGAATCGCTAT-------------------------------------------------------------------------------------AATGTTAAATTGG---------------------------------TTCCATTTTATCTGGGTTCATGTA---------CT---------ATAA--TTATTTCTATTTAAGATTTAA--ATAT-TTTTTTTAATTCTCAATATT-----------------TA-ATTCTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGA----------ATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:33 AM