ID:

dps_1770

 Coordinate:

Unknown_group_129:13467-13617 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.1 -30.0 -30.0

Flybase annnotation

CDS [Dpse\GA27705-cds]; exon [dpse_GLEANR_6734:2]; intron [Dpse\GA27705-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-4_DPer-I-intLTRGypsy-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACTGTAGTGTTGCGGTGTCCGCAGCAACTCACAACGTTCCCCCTCGTTTTTTTTGTTTTTTTGATTTTAATGACCATTTCTACTTCCAGGTCTGGCGGACATTCTCCCTCCGCTCGACCTCGTGTTGCTTGGCTTGGCCTTGAATCTGGTAAGCCTCCCGAGTTCTTCGGTTCCTAATCTCATCTTGCCTTCTCTTCTAGCCCGTCCTTGGGCCCCAGTCCAGGATGCAGACCGATCTTCCAGCTCGTGA
******************************************************************************..........(((((.((((((.........)))))).)))))..........((((((.((........))))))))..((((.....))))....................************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 GSM343916
embryo
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCC.................................... 22 2 2 8.00 16 16 0 0 0 0 0
....................................................................................................................................................................................................TCCAGCCCGTCCTTGGGCCCCAGT............................... 24 1 2 7.50 15 14 1 0 0 0 0
....................................................................................................................................................................................................TCCAGCCCGTCCTTGGGCCCCAGTC.............................. 25 1 2 7.00 14 13 1 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGC..................................... 21 2 5 6.40 32 32 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCCC................................... 23 2 2 5.50 11 11 0 0 0 0 0
....................................................................................................................................................................................................TCCAGCCCGTCCTTGGGCCCCAG................................ 23 1 2 5.00 10 10 0 0 0 0 0
....................................................................................................................................................................................................TCCAGCCCGTCCTTGGGCCCC.................................. 21 1 2 4.50 9 9 0 0 0 0 0
...................................................................................................................................................................................................TTCCAGCCCGTCCTTGGGCCCCAGT............................... 25 1 2 3.50 7 7 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCCCCAG................................ 26 2 2 3.00 6 6 0 0 0 0 0
.......................................................................................................................................................................TCGGTTCCTAATCTCATCTTGCCT............................................................ 24 0 1 3.00 3 3 0 0 0 0 0
...................................................................................................................................................................................................TTCCAGCCCGTCCTTGGGCCCCAG................................ 24 1 2 2.50 5 5 0 0 0 0 0
.............................................................................................................................................................................................................TCCTTGGGCCCCAGTCCAGG.......................... 20 0 2 2.50 5 5 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCCCC.................................. 24 2 2 2.50 5 4 1 0 0 0 0
....................................................................................................................................................................................................TCCAGCCCGTCCTTGGGCCCCA................................. 22 1 2 2.50 5 5 0 0 0 0 0
..................................................................................................................................................................................................................................TGCCGACCGATCTCCCAGCTCGTGA 25 2 3 2.33 7 5 0 1 1 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTTC..................................................................................... 21 0 5 2.20 11 11 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTT...................................................................................... 20 0 5 2.20 11 11 0 0 0 0 0
..............................................................................TTCTACTTCCAGGTCTGGCGGACA..................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0
........................................................................................................................................................................CGGTTCCTAATCTCATCTTGCCT............................................................ 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................................TCGGTTCCTAATCTCATCTTGCCTTC.......................................................... 26 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCCCCA................................. 25 2 2 2.00 4 4 0 0 0 0 0
........................................................................................................................TCGTGTTGCTTGGCTTGGCCTTG............................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCCT................................... 23 3 2 2.00 4 4 0 0 0 0 0
.....................................................................................................................................................................................................................................CGACCGATCTCCCAGCTCGTGA 22 2 3 2.00 6 6 0 0 0 0 0
.............................................................................................................................................TGAATCTGGTAAGCCTCCCGAGT....................................................................................... 23 0 4 1.75 7 7 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCT.................................................................................... 22 0 5 1.60 8 7 1 0 0 0 0
..................................................................................................................................................................................................ATTCCAGCCCGTCCTTGGGCCCCAG................................ 25 2 2 1.50 3 3 0 0 0 0 0
...................................................................................................................................................................................................TTCCAGCCCGTCCTTGGGCCC................................... 21 1 2 1.50 3 3 0 0 0 0 0
.............................................................................................................................................................................................TGTCTCTTCCAGCCCGTCCTTGGG...................................... 24 3 5 1.40 7 6 1 0 0 0 0
......................................................................................................................................................................................................................CCCAGTCCAGGGTGCCGACCGATC............. 24 2 3 1.33 4 4 0 0 0 0 0
.....................................................................................................................ACCGCGTGTTGTTTGGCTT................................................................................................................... 19 2 3 1.33 4 3 0 0 0 1 0
.............................................................................................................................................TGAATCTGGTAAGCCTCCCGAGTT...................................................................................... 24 0 4 1.25 5 4 1 0 0 0 0
...........................ACTCACAACGTTCCCCCTCGT........................................................................................................................................................................................................... 21 0 20 1.15 23 23 0 0 0 0 0
...................................................................................................................................................................................................TTCTAGCCCGTCCTTGGGCCCCA................................. 23 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................TCGGTTCCTAATCTCATCTTGCCTTCTC........................................................ 28 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................TTCCAGCCCGTCCTTGGGCCCCA................................. 23 1 2 1.00 2 2 0 0 0 0 0
.......................................................................................................................................................................TCGGTTCCTAATCTCATCTTGC.............................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGT....................................................................................... 19 0 5 1.00 5 4 1 0 0 0 0
.........................................................................................................................................................................................................CCCGTCCTTGGGCCCCAGTCCAGG.......................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................ATTCCAGCCCGTCCTTGGGCC.................................... 21 2 2 1.00 2 2 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCTTCGGT............................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................CTATTCCAGCCCGTCCTTGGGCCCCAG................................ 27 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................CAGCCCGTCCTTGGGCCCCAGTC.............................. 23 1 2 1.00 2 2 0 0 0 0 0
.......................................................................................................................................................................TCGGTTCCTAATCTCATCTTGCCTT........................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TGCAGACCGATCTTCCAGCTCGT.. 23 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................AAGCCTCCCGAGTTCTTCGGTTCC............................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................CTCGTGTTGCTTGGCTTGGCCTTGA........................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTTGCTTGGCTTGGCCTTGAA.......................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CGACCGATCTCCCAGCTCGTG. 21 2 3 1.00 3 3 0 0 0 0 0
....................................................................................................................................................................TCTTTGGTTCCTAATCTCATCTTGCC............................................................. 26 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................TGAATCTGGTAAGCCTCCCGAG........................................................................................ 22 0 4 1.00 4 3 0 1 0 0 0
....................................................................................................................................................................................................TCCAGCCCGTCCTTGGGCCCCAGTCC............................. 26 1 2 1.00 2 2 0 0 0 0 0
........................................................................................................................................................................CGGTTCCTAATCTCATCTTGCCTT........................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CAGGATGCAGACCGATCTTCCAGC...... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TGTCTCTTCCAGCCCGTCCTTG........................................ 22 3 7 0.86 6 6 0 0 0 0 0
...................................................................................................................................................TGGTAAGCCTCCCGAGTTCT.................................................................................... 20 0 5 0.80 4 4 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCA.................................... 22 3 5 0.80 4 4 0 0 0 0 0
..................................................................................................................................................................................................................................TGCCGACCGATCTCCCAGCT..... 20 2 4 0.75 3 3 0 0 0 0 0
.................GTCCGCAGCAACTCACAACG...................................................................................................................................................................................................................... 20 0 20 0.55 11 11 0 0 0 0 0
.....................GCAGCAACTCACAACGTTCCCCCTC............................................................................................................................................................................................................. 25 0 20 0.50 10 10 0 0 0 0 0
.............................................................................................................................................TGAATCTGGTAAGCCTCCCGA......................................................................................... 21 0 4 0.50 2 2 0 0 0 0 0
...................................................................................................................................................................................................TTCCAGCCCGTCCTTGGGCCCCAGTC.............................. 26 1 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................TCCTTGGGCCCCAGTCCAGGGTGCCGACA................. 29 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................TTCCAGCCCGTCCTTGGGCC.................................... 20 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................CAGCCCGTCCTTGGGCCCCAGT............................... 22 1 2 0.50 1 1 0 0 0 0 0
....................CGCAGCAACTCACAACGTTCCC................................................................................................................................................................................................................. 22 0 20 0.50 10 10 0 0 0 0 0
...............................................................................................................................................................................................TCTCTTCCAGCCCGTCCTTG........................................ 20 1 4 0.50 2 2 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGACCGTCCTTGGGCCC................................... 23 3 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................................................TGGGCCCCAGTCCAGGGTGCCGACCGAT.............. 28 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................CCCCAGTCCAGGGTGCCGACCGATC............. 25 2 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTGGGCCCCAGTCCAGGGTGAAAA................... 24 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................TGAATCTGGTAAGCCTCCCGAGTTC..................................................................................... 25 0 4 0.50 2 2 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCTGTCCTTGGGCCC................................... 23 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................TTCCAGCCCGTCCTTGGGCCCC.................................. 22 1 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................................AGCCCGTCCTTGGGTCCCAGTC.............................. 22 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................CAGCCCGTCCTTGGGCCCCAGTCCAGG.......................... 27 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................................CCAGCCCGTCCTTGGGCCCCAGTC.............................. 24 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................TCCAGCCCGTCCTTGGGCCCCAGTT.............................. 25 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................ATTCCAGCCCGTCCTTGGGCCCCAGT............................... 26 2 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................TGAATCTGGTAAGCCTCCCGAGTTCT.................................................................................... 26 0 4 0.50 2 2 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCAGTCCTTGGGCCCC.................................. 24 3 2 0.50 1 0 1 0 0 0 0
..................................................................................................................................................................................................ATTCCAGCCCGTCCTTGGGCCCCA................................. 24 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................................CCGGCCTTGGGCCCCAGTCCAGGG......................... 24 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................................TATTCCAGCCCGTCCTTGGGCCCCAA................................ 26 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................TCCTTGGGCCCCAGTCCAG........................... 19 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................TGCAGCCCGTCCTTGGGCCCCAT................................ 23 3 2 0.50 1 0 1 0 0 0 0
.............................................................................................................................................................................................................TCCTTGGGCCCCAGTCCAGGGTGCCGA................... 27 2 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTGGGCCCCAGTCCAGGGTGCCGACC................. 26 2 2 0.50 1 1 0 0 0 0 0
............GCGGTGTCCGCAGCAACTCACAACG...................................................................................................................................................................................................................... 25 0 20 0.40 8 8 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAG........................................................................................ 18 0 5 0.40 2 2 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCTT................................................................................... 23 0 5 0.40 2 2 0 0 0 0 0
.............................................................................................................................................TGAATCTGGTAAGCCTCCCG.......................................................................................... 20 0 5 0.40 2 2 0 0 0 0 0
..................................................................................................................................................CTGGTAAGCCTCCCGAGTTCT.................................................................................... 21 0 5 0.40 2 2 0 0 0 0 0
.............................................................................................................................................................................................................TCCTTGGGTCCCAGTCCAGG.......................... 20 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................CCGACCGATCTCCCAGCTCGTGA 23 2 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................ACCGATCTCCCAGCTCGTG. 19 1 3 0.33 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TGCCGACCGATCTCCCAGCTCG... 22 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TGCCGACCGATCTCCCAGCTC.... 21 2 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................................................................................TACTCCAGCCCGTCCTTGGGCCC................................... 23 3 3 0.33 1 0 1 0 0 0 0
......................................................................................................................................................................................................................CCCAGTCCAGGGTGCCGACCGAT.............. 23 2 3 0.33 1 1 0 0 0 0 0
.........................CAACTCACAACGTTCCCCCTCGTCTTT....................................................................................................................................................................................................... 27 1 20 0.30 6 4 2 0 0 0 0
................................................................................................................................................................................................CTCTTCCAGCCCGTCCTTGGG...................................... 21 1 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................................CTTGAATCTGGTAAGCCTCCCGAGA....................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................TTGCCTTGAATCTGGTAAGCCTCCCGA......................................................................................... 27 1 4 0.25 1 0 1 0 0 0 0
.............................................................................................................................................................................................TTTCTCTTCCAGCCCGTCCTTGG....................................... 23 2 4 0.25 1 0 1 0 0 0 0
..........................................................................................................................................CCTTGAATCTGGTAAGCCTCCCGA......................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0
....................CGCAGCAACTCACAACGTTC................................................................................................................................................................................................................... 20 0 20 0.25 5 5 0 0 0 0 0
.............................................................................................................................................................................................TGTCTCTTCCAGCCCGTCCTT......................................... 21 3 12 0.25 3 3 0 0 0 0 0
..................................................................................................................................................................................................................................TGCCGACCGATCTCCCAGCTT.... 21 3 4 0.25 1 1 0 0 0 0 0
......................CAGCAACTCACAACGTTCCCCCTCGTTTT........................................................................................................................................................................................................ 29 0 20 0.25 5 5 0 0 0 0 0
..............................................................................TTCTACTTCCAGGTCTGGC.......................................................................................................................................................... 19 0 9 0.22 2 2 0 0 0 0 0
..............................................................................TTCTACTTCCAGGTCTGGCG......................................................................................................................................................... 20 0 9 0.22 2 1 0 1 0 0 0
.............................................................................TTTCTACTTCCAGGTCTGGC.......................................................................................................................................................... 20 0 9 0.22 2 2 0 0 0 0 0
.............................................................................TTTCTACTTCCAGGTCTGGCG......................................................................................................................................................... 21 0 9 0.22 2 1 0 1 0 0 0
..................................................................................................................................................................................................ATTCCAGCCCGTCCTTGGGC..................................... 20 2 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................................GGTAAGCCTCCCGAGTTCT.................................................................................... 19 0 5 0.20 1 1 0 0 0 0 0
...................................................................................................................................................TGGTAAGCCTCCCGAGTTAA.................................................................................... 20 2 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................CTGGTAAGCCTCCCGAGTTCTT................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................TCTGTTAAGCCTCCCGAGTT...................................................................................... 20 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................CTGGTAAGCCTCCCGAGTT...................................................................................... 19 0 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................CTGGTAAGCCTCCCGAGTTCC.................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCA.................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCAA................................................................................... 23 2 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGTTA..................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................TCTGGTAAGCCTCCCGAGA....................................................................................... 19 1 5 0.20 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................GCAGACCGATATTCCAGA...... 18 2 5 0.20 1 0 0 0 0 0 1
.......ATTTTGCGGTGTCCGCAGCAACTC............................................................................................................................................................................................................................ 24 2 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................................................................................................CCCAGTCCAGGGTGCCGACC................. 20 2 6 0.17 1 1 0 0 0 0 0
...................................................................................................................................................TGGTAAGCCTCCCGAGTAAA.................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................................................................................TATCCCGCCCTTGGGCACCA................................. 20 3 7 0.14 1 1 0 0 0 0 0
...............................................................................TCTACTTCCAGGTCTGGCG......................................................................................................................................................... 19 0 9 0.11 1 1 0 0 0 0 0
..............................................................................TTCTACTTCCAGGTCTGGCC......................................................................................................................................................... 20 1 9 0.11 1 1 0 0 0 0 0
..............................................................................TTCTACTTCCAGGTCTGG........................................................................................................................................................... 18 0 9 0.11 1 0 0 1 0 0 0
..............................................................................TTCTACTTCCAGGTATGGCGC........................................................................................................................................................ 21 2 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CGACCGATCTCCCAGCTC.... 18 2 9 0.11 1 1 0 0 0 0 0
............GCGGTGTCCGCAGCAACTCACAAA....................................................................................................................................................................................................................... 24 1 20 0.10 2 2 0 0 0 0 0
..........TTGCGGTGTCCGCAGCAACTCAC.......................................................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
...................CCGCAGCAACTCACAACGTTC................................................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
.......................AGCAACTCACAACGTTCCCCC............................................................................................................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0 0
......................................................................................................................CCGCGTGTTGTTTGGCTT................................................................................................................... 18 2 20 0.10 2 2 0 0 0 0 0
..............................................................................TTCTACTTCCAGGTCTGGTA......................................................................................................................................................... 20 2 11 0.09 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTCCGACCGATCTCCCAGCT..... 20 3 11 0.09 1 1 0 0 0 0 0
.....................GCAGCAACTCACAACGTTCCCCCTCGTT.......................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.........................CAACTCACAACGTTCCCCCTCGTTT......................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
..............................CACAACGTTCCCCCTCGTTTT........................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................CTTGTAGACCGTCCTTGC....................................... 18 3 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................TGGTAAGCCTCCCGAGTTCAA................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
................TGTCCGCAGCAACTCACAACGTTC................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
..................................................TTTTTGTATTTTTGATTTGAA.................................................................................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TTGACATCACAACGCCACAGGCGTCGTTGAGTGTTGCAAGGGGGAGCAAAAAAAACAAAAAAACTAAAATTACTGGTAAAGATGAAGGTCCAGACCGCCTGTAAGAGGGAGGCGAGCTGGAGCACAACGAACCGAACCGGAACTTAGACCATTCGGAGGGCTCAAGAAGCCAAGGATTAGAGTAGAACGGAAGAGAAGATCGGGCAGGAACCCGGGGTCAGGTCCTACGTCTGGCTAGAAGGTCGAGCACT
************************************************************..........(((((.((((((.........)))))).)))))..........((((((.((........))))))))..((((.....))))....................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 GSM343916
embryo
 M059
embryo
 M022
male body		 SRR902011
testis
 V112
male body		 GSM444067
head
........ACAACGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 0 2 45.50 91 83 0 5 3 0 0 0 0
........AAAACGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 1 3 28.00 84 78 0 4 1 0 1 0 0
............................................................................................................................................................................................................................GGTCCTACGTCTGGCTAGAAGGT........ 23 0 1 11.00 11 11 0 0 0 0 0 0 0
.........................................................................................................................................................CGGAGGGCTCAAGAAGCCAAGGAT.......................................................................... 24 0 1 9.00 9 5 4 0 0 0 0 0 0
..........................................................................................................GGGAGGCGAGCTGGAGCACAACG.......................................................................................................................... 23 0 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................................................................................TCAAGAAGCCAAGGATTAGAGTAG.................................................................. 24 0 1 4.00 4 0 4 0 0 0 0 0 0
........ACAACGCCACAGGCGTCGTTGAG............................................................................................................................................................................................................................ 23 0 2 3.50 7 7 0 0 0 0 0 0 0
........AAAACGCCACAGGCGTCGTTGAG............................................................................................................................................................................................................................ 23 1 3 3.33 10 10 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGTCCTACGTCTGGCTAGAAGGT........ 24 0 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GGTCCTACGTCTGGCTAGAAGG......... 22 0 1 3.00 3 3 0 0 0 0 0 0 0
...........................................................................................................GGAGGCGAGCTGGAGCACAACG.......................................................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCAGGAACCCGGGGTCAGGTCCT......................... 24 0 1 3.00 3 0 3 0 0 0 0 0 0
........ACAACGCCACAGGCGTCGTTGAGTGT......................................................................................................................................................................................................................... 26 0 2 2.00 4 4 0 0 0 0 0 0 0
........................................................................................................................................................TCGGAGGGCTCAAGAAGCCAAGGAT.......................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TCAGGTCCTACGTCTGGCTAGAA........... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................GGAGGCGAGCTGGAGCACAAC........................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.......CACAACGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GGTCAGGTCCTACGTCTGGCTAGA............ 24 0 1 2.00 2 2 0 0 0 0 0 0 0
........ACAACGCCACAGGCGTCGTTGAGTGTT........................................................................................................................................................................................................................ 27 0 2 2.00 4 3 0 1 0 0 0 0 0
........AAAACGCCACAGGCGTCGTTGAGTGTT........................................................................................................................................................................................................................ 27 1 3 1.67 5 5 0 0 0 0 0 0 0
............................................................................................................................................................AAGGCTCAAGATGCCGAGG............................................................................ 19 3 15 1.60 24 20 0 0 0 1 0 3 0
..........................................................................GGTAAAGATGAAGGTCCAGACCGCCT....................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................GGAGGGCTCAAGAAGCCAAGGAT.......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGGTCAGGTCCTACGTCTGGCTAGA............ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................AGGGAGGCGAGCTGGAGCACAACG.......................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGGTCAGGTCCTACGTCTGGCTAGAA........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTCGGGCAGGAACCCGGGGTCAGGT............................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................GAGGGCTCAAGAAGCCAAGGAT.......................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................TGGAGCACAACGAACCGAACCGGAA............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGGTCCTACGTCTGGCTAGAAGG......... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCCTACGTCTGGCTAGAAGGT........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................GGCTCAAGAAGCCAAGGAT.......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................CGGAGGGCTCAAGAAGCCAGGGAT.......................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................AGATGAAGGTCCAGACCGCCT....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................GAGGGAGGCGAGCTGGAGCACAACG.......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AACGGAAGAGAAGATCGGGCAGGAAC........................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TCAGGTCCTACGTCTGGCTAGA............ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTCCTACGTCTGGCTAGAAGGT........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GGTCCTACGTCTGGCTAGAAGGTC....... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AACGGAAGAGAAGATCGGGCAGGAACCC...................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAAGATCGGGCAGGAACCCGGGGT................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTCGGGCAGGAACCCGGGGT................................. 21 1 2 1.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GGGCAGGAACCCGGGGTCAGGTCCT......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................CGGAGGGCTCAAGAAGCCAAGGA........................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................AAAACGGAAGAGAAGATCGGGCAG............................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................GGCGAGCTGGAGCACAACG.......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
........ATAACGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 1 3 0.67 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTCGGGCAGGAACCCGGGGTCAGGT............................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCGGGCAGGAACCCAGGGTCAG.............................. 22 1 2 0.50 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAGGAACCCGGGGTCAGGTCCCACG...................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................GTCGGGCAGGAACCCGGGGTCAGGT............................ 25 1 2 0.50 1 1 0 0 0 0 0 0 0
........ACAACGCCACAGGCGTCCTTGAGT........................................................................................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GGGGTCAGGTCCCACGGCTGGCTAGA............ 26 2 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................................GGAACTTAGACCATTCGGAGGG........................................................................................... 22 0 5 0.40 2 2 0 0 0 0 0 0 0
..................................................................................................GTGGAAGAGGGAGGCGAG....................................................................................................................................... 18 2 20 0.35 7 7 0 0 0 0 0 0 0
........AAAGCGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 2 6 0.33 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGGCTGGCTAGAGGGTCGAGCAC. 23 2 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGGAAGAGAAGATCGGGCAGG........................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCGGGGTCAGGTCCTACGTCTG.................. 22 0 3 0.33 1 0 0 0 0 1 0 0 0
........ATAACGCCACAGGCGTCCTTGAGT........................................................................................................................................................................................................................... 24 2 3 0.33 1 1 0 0 0 0 0 0 0
........AAAACGCCACAGGCGTCGTTGAGTGT......................................................................................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCGGGGTCAGGTCCTACGTCT................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGGTCAGGTCCCACGGCTGGCTAGA............ 25 2 3 0.33 1 1 0 0 0 0 0 0 0
........AACACGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 2 3 0.33 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................CAGAGAAGGTCGGGCAGGAACCC...................................... 23 2 4 0.25 1 0 0 0 1 0 0 0 0
........AAAACGACACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 2 4 0.25 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................CGGAGGGCTCAAGAACCCAAGGAT.......................................................................... 24 1 4 0.25 1 1 0 0 0 0 0 0 0
........AAAACGCCACAGGCGTCGTTGAGTC.......................................................................................................................................................................................................................... 25 2 4 0.25 1 1 0 0 0 0 0 0 0
........ATTTCGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 3 5 0.20 1 1 0 0 0 0 0 0 0
.........................................................................................................................................CGGAACTTAGACCATTCGGAGGG........................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0
..................................................................................................................................................GACCATTCGGAGGGCTCAAGAA................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0
..................AGGCGTCGTTGAGTGTTGC...................................................................................................................................................................................................................... 19 0 20 0.20 4 0 0 0 0 4 0 0 0
..................................................................................................................................................................................................................................ACGTCTGGCATGAAAGTCGA..... 20 3 6 0.17 1 1 0 0 0 0 0 0 0
........AAAACGCCACAGGCGTCGTTGAGTCC......................................................................................................................................................................................................................... 26 3 7 0.14 1 1 0 0 0 0 0 0 0
........AAAATGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 2 7 0.14 1 1 0 0 0 0 0 0 0
........ACAACGCCATAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 1 15 0.13 2 2 0 0 0 0 0 0 0
........AAATTGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 3 8 0.13 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTCCTACGACTGGCTAGAAGGT........ 22 1 8 0.13 1 1 0 0 0 0 0 0 0
........AAAACGCCACAGGCGTCGTTGAGTA.......................................................................................................................................................................................................................... 25 2 8 0.13 1 1 0 0 0 0 0 0 0
.............................................................................AAAGATGAAGGTCCAGACC........................................................................................................................................................... 19 0 9 0.11 1 1 0 0 0 0 0 0 0
........AAAACGCCATAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 2 18 0.11 2 2 0 0 0 0 0 0 0
........AAAAGGCAACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 3 10 0.10 1 0 0 1 0 0 0 0 0
........ACAAAGCCACAGGCGTCGTTGAGTGT......................................................................................................................................................................................................................... 26 1 10 0.10 1 1 0 0 0 0 0 0 0
........AAACTGCCACAGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 3 11 0.09 1 1 0 0 0 0 0 0 0
........................................................................................................................................................TCGCAAGGCTCAAGATGCC................................................................................ 19 3 12 0.08 1 0 0 0 0 1 0 0 0
........ACAACGCCACTGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 1 12 0.08 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATAGGCAGGAACCCGGGGT................................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0
...................................GCAAGGGGGAGCAAAAAAAACA.................................................................................................................................................................................................. 22 0 14 0.07 1 1 0 0 0 0 0 0 0
........ACAACGCCATAGGCGTCGTTGAGTGTT........................................................................................................................................................................................................................ 27 1 14 0.07 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................GGCTCAAGATGCCGAGGCT.......................................................................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0
............................................................................................................GAGGAGAGTTGGACCACAA............................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................TTCGGAGGGCTATAAAAGC................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0 0 0
................................GTTGCAAGGGGGAGCAAAAAAA..................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0
........ACATCGCCACGGGCGTCGTTGAGT........................................................................................................................................................................................................................... 24 2 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................TGGAAGAGGGAGGCGAGCAA.................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0
..............CCACAGGCGTCGTTGAGTGTTGC...................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_129:13417-13667 + dps_1770 AACTGTAGTGTTGCGGTGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACGTTCCC-------CCTCGTTTTTTTTGTTTTTTTGATTTTAATGACCAT--TTCTACTTCCAGGTCTGGC-------------------------------GGACATTCTCCCTCCGCTCGACCTCGTGTTGCTT---------------GGCTTGGCCTTGAATCTGGTAAGCCTCCCGAGTTCTTCGG---TTCCTAATCTCATCTTGCCTTCTCTTCTAGCCCGTCCTTGGGCCCC-----------------------AGTCCAGGATG--CAGACCGATCTTCCAGCTCGTGA
droPer2 scaffold_274:225-451 + AACTGTAGAGTTGCGGTGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACGTTCCC-------CCTCGTTTTTTTTTTATTTTTATTTTT--TGGCCTT--TTCTACTTCTAGGTCTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAATCTGGTAAGCTTCCCGAGTTCTTGGG---TTCCTCATCTCACCTTGCCTTTTCTTCCAGCCCGTCCTTGGGTTCC-----------------------AGTCCAGGGTG--CTGACCGATCTCCCAGCTCGTGA
droWil2 scf2_1100000004558:1573963-1574059 - TTTT------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTTCTGCGTTTAATTAAGAC-CTCCTAGTTCTTGGCCTGGT-------------------------------CGACATCC-------------------------------------------------------------------------------------------------------------------------CCCCCTCCCTCATTAGTTGGCTGTTGCTAGCT--------TGG--T--------------------CT
droVir3 scaffold_12967:288425-288513 + TTGT---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTATTTTTAGGTTTTGCAGTAACGCTATTTTCATATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------TT
droMoj3 scaffold_6496:19166214-19166308 + GAATGA-GTATTCCGC----AGTCGGTAACGCCCGACTGCAACGTTC-TTACTTGTTTTT---------------------------------------------------------------------------------------------TTTTGTTTTTTTTTTTTTTTGTAACAGT--TTTTCTTTT----------------------------AAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:9843452-9843547 - GACTGTAATGGGGTGGCAG-T----------------------------------------------------------------------------------------A-----TTT---GGCTCACTGAATTTGGC-------ATTATTTGTTTCTGTATTGTTGTTTTTAATTACTTT--TTCTGGCTCTTGTTTTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:18036125-18036203 + AACTGCAAGGGTATATCAA-C----------------------------------------------------------------------------------------------TTCGGCTCCGCC-CGAAGTTAGC-------TTTCCTTTCTTGTTTTTTTTTAACTCTAACAACCAT--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000392924:1587-1656 + AACTGCAAGGGTGTATAAA-C----------------------------------------------------------------------------------------------TTCGGCTCCGCC-CGAAGTTAGC-------TTTCCTTTCTTGTATTTTTTTGTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302685:432122-432194 + AAGTGTAAGGGGGCGGCGG-C----------------------------------------------------------------------------------------------GGCGGCGTTTCC-CAACTCACACTTTCCTCCCCCGTTTTTGTTTTATTTTT----TTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454077:1416078-1416143 - GCGG---------------CGGCCTAAACAACACAATTAAG--------------------------------------------------------------------------------------------------------ACCCGTTTACATTTTTTTTTTGGTTTTTATTACCAT--TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491104:482602-482656 + ATAA---------------C-----------------------GTTTTTC-----------------------------------------------------------------------------------------------ACTTGTTTTTATGTCTTTTTTGTTTTTGATCTCCAG--TTCTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779479:325641-325807 + GTTT---------------C-----------------------------G-----------------------------------------------------------------------------------------------TTTTGTTTTTTTCTTTTTTCTGTTTTTGGG-GGCTCT-GCCCACTTCAA--TGGCCCCTCGTCCTCA------------------------GCCT----CGTCCTTTTGGCCCG---------------------------------TGTGTGTGGTCAGCTTATGGTAAGGCAAGGCTTTTCGTATTTCCGTATTGAGCACCCTTTTAGCGCAGCCCCGGCTCCC-----------------------------------------------------------
droBia1 scf7180000300056:607-725 + TCGT---------------TTT-------------------------------------TTTTGTTTTTATTAATTTTATGTTAAATTTTACTTTCTTCAGAAAGTTACATTTTCCC-----------------------------------------------------------------------------------------------------------------------------------GATGAATCTAGTATTCCTTCATCGGTTTGAATGTTC---------AAATCTTGT----------------------------------------------------------------------------------------------------AAA--CCTA-----------------CC
droTak1 scf7180000415857:227680-227799 - TGCAAAATTACAAC---GT-C----------------------------------------------------------------------------------------------AACATGGGCTTAC-AGCTTT-----------TTCGCTTTTTCTGCTTTTTTGCTTTTGCTCGACTA--TTTTGCTCTTTTGTCTGGC-------------------------------C----------------------ATTCGA-----------------CATTTCATTA-----------------------------------------------------------------------------------------------------GGCC--------GAC--CCCG-----------------CG
droEug1 scf7180000408825:306045-306142 - TTGC---------------C-----------------------------------------------------------------------------------------------------------------------------ATTCGCTTCTTCTGTTTTTTTGGTTTTTTTTAATTT--TTTTATTTT-GGGTTTCTCCCTGCTGTTG-----------------------------------------ATTTTGCGC-----------------CTTTGTTTTG-----------------------------------------------------------------------------------------------------GGTC--------GAA--T--------------------CT
dm3 chr3L:24174382-24174426 - ACTT----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTTTGTATTATTTTAATAACCAT--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:10168721-10168785 + TGTAATGGGTATCCGTT---A----------GTCGACCACAGCGTTC-TC-----------------------------------------------------------------------------------------------CCTTGTTTTATTTTTTTTTTTTTTTTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_6:472613-472674 - CTGA---------------TAGTCGG-GAAACTCGACTATAGCGTTC-TC-----------------------------------------------------------------------------------------------CCTTGTTTTCTTTGTTTGTTTGTGCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:9331998-9332101 - CAGA---------------TAGTCGG-GGAACTCGACTATAGCGTTC-TCTCTTGTTTTT---------------------------------------------------------------------------------------------TTTTTATTTTTGCCATTTTTGTTGCACT--GGTTTCGTC----------------------------GGGGTC---TTTCAGCGGTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------A--C--------------------TC
droEre2 scaffold_4770:13014234-13014339 + CTTTGCTTTATTAT-------------------------------------------------------------------------------------------------------------------------------------------------TGAATTTTGTCTTAGTGCAGCT--TCCTGCTTCTAGATCTGGC-------------------------------GGCCTCTGGCCTCCGTGTGTGCCTCGTGTTG---------------------------------------------------------------------------------------------------------------------GCAGTTGGC-ACT--------TGGCAT--------------------TG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AACTGTAGTGTTGCGGTGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACGTTCCC-------CCTCGTTTTTTTTGTTTTTTTGATTTTAATGACCAT--TTCTACTTCCAGGTCTGGC-------------------------------GGACATTCTCCCTCCGCTCGACCTCGTGTTGCTT---------------GGCTTGGCCTTGAATCTGGTAAGCCTCCCGAGTTCTTCGG---TTCCTAATCTCATCTTGCCTTCTCTTCTAGCCCGTCCTTGGGCCCC-----------------------AGTCCAGGATG--CAGACCGATCTTCCAGCTCGTGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................TCGG---TTCCTAATCTCATCTTGCCT.....................................................................................2413.0030300000000
.......................................................................................................................................................................................................................................................................................................................................................................TCCTTGGGCCCC-----------------------AGTCCAGG............................2022.5050500000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTTC.................................................................................................................2152.201101100000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTT..................................................................................................................2052.201101100000000
.......................................................................................................................................................................................TTCTACTTCCAGGTCTGGC-------------------------------GGACA................................................................................................................................................................................................2412.0020000000200
...............................................................................................................................................................................................................................................................................................................................CGG---TTCCTAATCTCATCTTGCCT.....................................................................................2312.0020200000000
..............................................................................................................................................................................................................................................................................................................................TCGG---TTCCTAATCTCATCTTGCCTTC...................................................................................2612.0020200000000
................................................................................................................................................................................................................................................................TCGTGTTGCTT---------------GGCTTGGCCTTG........................................................................................................................................2312.0020200000000
....................................................................................................................................................................................................................................................................................................TGAATCTGGTAAGCCTCCCGAGT...................................................................................................................2341.7570700000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCT................................................................................................................2251.6080710000000
....................................................................................................................................................................................................................................................................................................TGAATCTGGTAAGCCTCCCGAGTT..................................................................................................................2441.2550410000000
..........................................................................................................................ACTCAC-AACGTTCCC-------CCTCGT.......................................................................................................................................................................................................................................................................................21201.152302300000000
.............................................................................................................................................................................................................................................................................................................................................................TTCTAGCCCGTCCTTGGGCCCC-----------------------A...................................2311.0010010000000
..............................................................................................................................................................................................................................................................................................................................TCGG---TTCCTAATCTCATCTTGCCTTCTC.................................................................................2811.0010100000000
..............................................................................................................................................................................................................................................................................................................................TCGG---TTCCTAATCTCATCTTGC.......................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGT...................................................................................................................1951.0050410000000
...................................................................................................................................................................................................................................................................................................................................................................CCCGTCCTTGGGCCCC-----------------------AGTCCAGG............................2411.0010100000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCTTCGG---T........................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................TCGG---TTCCTAATCTCATCTTGCCTT....................................................................................2511.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TG--CAGACCGATCTTCCAGCTCGT..2311.0010100000000
..............................................................................................................................................................................................................................................................................................................AAGCCTCCCGAGTTCTTCGG---TTCC.....................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................................................CTCGTGTTGCTT---------------GGCTTGGCCTTGA.......................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................TCGTGTTGCTT---------------GGCTTGGCCTTGAA......................................................................................................................................2511.0010100000000
....................................................................................................................................................................................................................................................................................................TGAATCTGGTAAGCCTCCCGAG....................................................................................................................2241.0040300000100
...............................................................................................................................................................................................................................................................................................................................CGG---TTCCTAATCTCATCTTGCCTT....................................................................................2411.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGGATG--CAGACCGATCTTCCAGC......2411.0010100000000
..........................................................................................................................................................................................................................................................................................................TGGTAAGCCTCCCGAGTTCT................................................................................................................2050.8040400000000
.................GT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACG.........................................................................................................................................................................................................................................................................................................20200.551101100000000
....................................................................................................................GCAGCAACTCAC-AACGTTCCC-------CCTC.........................................................................................................................................................................................................................................................................................25200.501001000000000
....................................................................................................................................................................................................................................................................................................TGAATCTGGTAAGCCTCCCGA.....................................................................................................................2140.5020200000000
...................................................................................................................CGCAGCAACTCAC-AACGTTCCC-------.............................................................................................................................................................................................................................................................................................22200.501001000000000
....................................................................................................................................................................................................................................................................................................TGAATCTGGTAAGCCTCCCGAGTTC.................................................................................................................2540.5020200000000
....................................................................................................................................................................................................................................................................................................TGAATCTGGTAAGCCTCCCGAGTTCT................................................................................................................2640.5020200000000
.......................................................................................................................................................................................................................................................................................................................................................................TCCTTGGGCCCC-----------------------AGTCCAG.............................1920.5010100000000
............GCGGTGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACG.........................................................................................................................................................................................................................................................................................................25200.4080800000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAG....................................................................................................................1850.4020200000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCTT...............................................................................................................2350.4020200000000
....................................................................................................................................................................................................................................................................................................TGAATCTGGTAAGCCTCCCG......................................................................................................................2050.4020200000000
.........................................................................................................................................................................................................................................................................................................CTGGTAAGCCTCCCGAGTTCT................................................................................................................2150.4020200000000
..................................................................................................................................................................................................................................................................................................CTTGAATCTGGTAAGCCTCCCGAGA...................................................................................................................2540.2510100000000
.................................................................................................................................................................................................................................................................................................CCTTGAATCTGGTAAGCCTCCCGA.....................................................................................................................2440.2510100000000
...................................................................................................................CGCAGCAACTCAC-AACGTTC......................................................................................................................................................................................................................................................................................................20200.2550500000000
.....................................................................................................................CAGCAACTCAC-AACGTTCCC-------CCTCGTTTT....................................................................................................................................................................................................................................................................................29200.2550500000000
.......................................................................................................................................................................................TTCTACTTCCAGGTCTGGC-------------------------------.....................................................................................................................................................................................................1990.2220200000000
.......................................................................................................................................................................................TTCTACTTCCAGGTCTGGC-------------------------------G....................................................................................................................................................................................................2090.2220100000100
....................................................................................................................................................................................T--TTCTACTTCCAGGTCTGGC-------------------------------.....................................................................................................................................................................................................2090.2220200000000
....................................................................................................................................................................................T--TTCTACTTCCAGGTCTGGC-------------------------------G....................................................................................................................................................................................................2190.2220100000100
...........................................................................................................................................................................................................................................................................................................GGTAAGCCTCCCGAGTTCT................................................................................................................1950.2010100000000
..........................................................................................................................................................................................................................................................................................................TGGTAAGCCTCCCGAGTTAA................................................................................................................2050.2010100000000
.........................................................................................................................................................................................................................................................................................................CTGGTAAGCCTCCCGAGTTCTT...............................................................................................................2250.2010100000000
.........................................................................................................................................................................................................................................................................................................CTGGTAAGCCTCCCGAGTT..................................................................................................................1950.2010100000000
.........................................................................................................................................................................................................................................................................................................CTGGTAAGCCTCCCGAGTTCC................................................................................................................2150.2010100000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCA................................................................................................................2250.2010100000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTTCAA...............................................................................................................2350.2010100000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGTTA.................................................................................................................2150.2010100000000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCCTCCCGAGA...................................................................................................................1950.2010100000000
..........................................................................................................................................................................................................................................................................................................TGGTAAGCCTCCCGAGTAAA................................................................................................................2060.1710100000000
........................................................................................................................................................................................TCTACTTCCAGGTCTGGC-------------------------------G....................................................................................................................................................................................................1990.1110100000000
.......................................................................................................................................................................................TTCTACTTCCAGGTCTGGC-------------------------------C....................................................................................................................................................................................................2090.1110100000000
.......................................................................................................................................................................................TTCTACTTCCAGGTCTGG.....................................................................................................................................................................................................................................1890.1110000000100
............GCGGTGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AAA..........................................................................................................................................................................................................................................................................................................24200.1020200000000
..........TTGCGGTGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-.............................................................................................................................................................................................................................................................................................................23200.1020200000000
....................C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACGTTC......................................................................................................................................................................................................................................................................................................21200.1020200000000
......................................................................................................................AGCAACTCAC-AACGTTCCC-------CC...........................................................................................................................................................................................................................................................................................21200.1020020000000
.......................................................................................................................................................................................TTCTACTTCCAGGTCTGGT-------------------------------A....................................................................................................................................................................................................20110.0910100000000
....................................................................................................................GCAGCAACTCAC-AACGTTCCC-------CCTCGTT......................................................................................................................................................................................................................................................................................28200.0510100000000
........................................................................................................................CAACTCAC-AACGTTCCC-------CCTCGTTT.....................................................................................................................................................................................................................................................................................25200.0510010000000
.............................................................................................................................CAC-AACGTTCCC-------CCTCGTTTT....................................................................................................................................................................................................................................................................................21200.0510100000000
..........................................................................................................................................................................................................................................................................................................TGGTAAGCCTCCCGAGTTCAA...............................................................................................................21200.0510100000000
................TGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACGTTC......................................................................................................................................................................................................................................................................................................24200.0510010000000
droPer2
AACTGTAGAGTTGCGGTGT-C----------------------------------------------------------------------------------------------CGCAGCAACTCAC-AACGTTCCC-------CCTCGTTTTTTTTTTATTTTTATTTTT--TGGCCTT--TTCTACTTCTAGGTCTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAATCTGGTAAGCTTCCCGAGTTCTTGGG---TTCCTCATCTCACCTTGCCTTTTCTTCCAGCCCGTCCTTGGGTTCC-----------------------AGTCCAGGGTG--CTGACCGATCTCCCAGCTCGTGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAA......................................................................................................................................261114.27157014510011
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCT..........................................................................................................................................221213.7516501641000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTG........................................................................................................................................241212.8315401512001
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGA.......................................................................................................................................251210.1712201201001
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAATC....................................................................................................................................28113.09342301001
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTT.........................................................................................................................................23122.17260240002
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGCCT..........................................................................................................................................21131.69220220000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCC...........................................................................................................................................21121.50180180000
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAA......................................................................................................................................25121.33160160000
....................................................................................................................GCAGCAACTCAC-AACGTTCCC-------CC...........................................................................................................................................................................................................................................................................................23201.20240240000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCCTTTTCT................................................................................27161.13180180000
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGCCTTG........................................................................................................................................23131.08140140000
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGCCTTGA.......................................................................................................................................24131.08140140000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAAA.....................................................................................................................................27111.00110110000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCCTTT...................................................................................24180.94170170000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCCTTTTCTT...............................................................................28160.94150150000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAAT.....................................................................................................................................27110.647070000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCG.............................................................................................................................................19130.628080000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGTTCTTGG.............................................................................................................25100.505140000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGTTCTTG..............................................................................................................24100.404040000
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGCC...........................................................................................................................................20130.385050000
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAATC....................................................................................................................................27120.334040000
............................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGGTG--CTGACCGATCTC...........2160.332020000
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGCCTT.........................................................................................................................................22130.314040000
..........................................................................................................................................................................................................................................................................................................TGGTAAGCTTCCCGAGTTCTTGGG---T........................................................................................................25100.303011001
..........................................................................................................................................................................................................................................................................................................TGGTAAGCTTCCCGAGTTCTTG..............................................................................................................22100.303030000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGTTCTTGGG---.........................................................................................................26100.303030000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCG..........................................................................................................................................22120.253030000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGC............................................................................................................................................20120.253030000
..........................................................................................................................................................................................................................................................................................................TGGTAAGCTTCCCGAGTTCTTGGG---.........................................................................................................24100.202020000
.................................................................................................................................................................................................................................................................CGTGTTGTTT---------------GGCTTCGCCTTG........................................................................................................................................22150.203030000
.................................................................................................................................................................................................................................................................CGTGTTGTTT---------------GGCTTCGCCT..........................................................................................................................................20150.203030000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGT...................................................................................................................19100.202200000
......................................................................................................................................................................................................................................................................TGTTT---------------GGCTTCGCCTTGAATCTGG.................................................................................................................................24160.193030000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCCTTTTC.................................................................................26160.193030000
.................................................................................................................................................................................................................................................................................................................................G---TTCCTCATCTCACCTTGCCTTTTCT................................................................................26160.193030000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCA...........................................................................................................................................21120.172200000
............................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGGTG--CTGACCGATCTCCC.........2360.171010000
...................................................................................................................................................................................................................................................................................................................TCCCGAGTTCTTGGG---TTCCTCATCT...............................................................................................25180.173030000
..............................................................................................................................................................................................................................................................................................................................TGGG---TTCCTCATCTCACCTTGCCTTT...................................................................................26180.173030000
...................................................................................................................................................................................................................................................................................................................TCCCGAGTTCTTGGG---TTCCTCATC................................................................................................24180.173021000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGT.......................................................................................................................................25120.172020000
..............................................................................................................................................................................................................................................................................................................................TGGG---TTCCTCATCTCACCTTGCCTT....................................................................................25190.163030000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCCTT....................................................................................23190.163030000
..............................................................................................................................................................................................................................................................................................................................TGGG---TTCCTCATCTCACCTTGCCT.....................................................................................24190.163030000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGC.......................................................................................20190.163030000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGT............................................................................................................................................20130.152020000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTC..............................................................................................................................................18130.152110000
...................................................................................................................................................................................................................................................................TGTTGTTT---------------GGCTTCGCCTTGAATC....................................................................................................................................24130.152020000
..................................................................................................................................................................................................................................................................GTGTTGTTT---------------GGCTTCGCCTTG........................................................................................................................................21150.132020000
.....................................................................................................................................................................................................................................................................................................................................TTCCTCATCTCACCTTGCCTTTTCT................................................................................25160.132020000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCCTTTT..................................................................................25180.112020000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGTTCTTGGG---TT.......................................................................................................28100.101010000
.........................................................................................................................................................................................................................................................................................................CTGGTAAGCTTCCCGAGTTCTTG..............................................................................................................23100.101010000
.............................................................................................................................................................................................................................................................................................................TAAGCTTCCCGAGTTCTTGGG---TT.......................................................................................................23100.101010000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGTTCTTGGG---T........................................................................................................27100.101100000
.........................................................................................................................................................................................................................................................................................................CTGGTAAGCTTCCCGAGTTCTTGGG---.........................................................................................................25100.101010000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGTTCT................................................................................................................22100.101010000
........................................................................................................................................................................................................................................................................................................TCTGGTAAGCTTCCCGAGTTCTTGAA---.........................................................................................................26100.101100000
..................................................................................................................................................................................................................................................................................................................TTCCCGAGTTCTTGGG---TTCCTCAT.................................................................................................24100.101010000
..................................................................................................................................................................................................................................................................................................................TTCCCGAGTTCTTGGG---TTCCTCATC................................................................................................25100.101010000
.........................................................................................................................................................................................................................................................................................................CTGGTAAGCTTCCCGAGTTCTTGGG---T........................................................................................................26100.101010000
....................................................................................................................................................................................................TCTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGCTTCGC............................................................................................................................................26110.091010000
......................................................................................................................................................................................................TGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGCTTCGC............................................................................................................................................24110.091001000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCA..........................................................................................................................................22120.081010000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGCCTTGAT......................................................................................................................................26120.081010000
.........................................................................................................................................................................................................................................................................................................................................TCATCTCACCTTGCCTTTTCTTCCAG...........................................................................26120.081010000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTG--CTGACCGATCTCCCAGC......24120.081010000
.........................................................................................................................................................................................................................................GA----------------------CGTGTTGTTT---------------GGCTTCGA............................................................................................................................................20130.081010000
..........................................................................................................................................................................................................................................A----------------------CGTGTTGTTT---------------GGCTTCGC............................................................................................................................................19130.081010000
.................................................................................................................................................................................................................................................................CGTGTTGTTT---------------GGCTTCGCCTTGAATC....................................................................................................................................26130.081010000
..........................................................................................................................................................................................................................................................................T---------------GGCTTCGCCTTGAATCTGGTAAG.............................................................................................................................24140.071010000
..................................................................................................................................................................................................................................................................GTGTTGTTT---------------GGCTTCGCCTTGA.......................................................................................................................................22140.071010000
.................................................................................................................................................................................................AGGTCTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGC.................................................................................................................................................24150.071010000
.................................................................................................................................................................................................AGGTCTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGCT................................................................................................................................................25150.071010000
.....................................................................................................................................................................................................................................................................TTGTTT---------------GGCTTCGCCTTGAATCTG..................................................................................................................................24160.061010000
....................................................................................................................................................................................................TCTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGCTT...............................................................................................................................................23160.061010000
..........................................................................................................................................................................................................................................................................T---------------GGCTTCGCCTTGAATCTG..................................................................................................................................19160.061010000
.......................................................................................................................................................................................................................................................................GTTT---------------GGCTTCGCCTTGAA......................................................................................................................................18160.061010000
..............................................................................................................................................................................................................................................................................................................................TGGG---TTCCTCATCTCACCTTGCCTTTTCT................................................................................29160.061010000
.......................................................................................................................................................................................................................................................................................................................GAGTTCTTGGG---TTCCTCATCTCACCT..........................................................................................26160.061010000
....................................................................................................................................................................................................TCTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGC.................................................................................................................................................21160.061010000
.................................................................................................................................................................................................................................................................................................................................G---TTCCTCATCTCACCTTGCCTTTTCTT...............................................................................27160.061010000
..................................................................................................................................................................................................GGTCTGGC-------------------------------GA----------------------CGTGTTGTT....................................................................................................................................................................19160.061010000
.....................................................................................................................................................................................................CTGGC-------------------------------GA----------------------CGTGTTGTTT---------------GGCTT...............................................................................................................................................22160.061010000
......................................................................................................................................................................................................................................................................................................................................TCCTCATCTCACCTTGCCTTTTCTT...............................................................................25170.061010000
.......................................................................................................................................................................................................................................................................................................................................CCTCATCTCACCTTGCCTTTTCTT...............................................................................24170.061010000
....................................................................................................................................................................................................................................................................GTTGTTT---------------GGCTTCGCCTTGA.......................................................................................................................................20170.061010000
...............................................................................................................................................................................................................................................................................................................................GGG---TTCCTCATCTCACCTTGCCTTT...................................................................................25180.061010000
.................................................................................................................................................................................................................................................................................................................................G---TTCCTCATCTCACCTTGCCTTT...................................................................................23180.061010000
....................................................................................................................................................................................................................................................................................................................CCCGAGTTCTTGGG---TTCCTCATC................................................................................................23180.061010000
...................................................................................................................................................................................................................................................................................................................TCCCGAGTTCTTGGG---TTCCTCATCTCAC............................................................................................28180.061010000
...................................................................................................................................................................................................................................................................................................................TCCCGAGTTCTTGGG---TTCCTCAT.................................................................................................23190.051010000
..............................................................................................................................................................................................................................................................................................................................TGGG---TTCCTCATCTCACCTTGCC......................................................................................23190.051010000
.............................................................................................................................................................................................................................................................................................................................TTGGG---TTCCTCATCTCACCTTG........................................................................................22190.051010000
...........................................................................................................................................................................................................................................................................................................................TCTTGGG---TTCCTCATCTCACCTTG........................................................................................24190.051010000
.............................................................................................................................................................................................................................................................................................................................TTGGG---TTCCTCATCTCACCTTGC.......................................................................................23190.051010000
..............................................................................................................................................................................................................................................................................................................................TGGG---TTCCTCATCTCACCTTGC.......................................................................................22190.051010000
.................................................................................................................................................................................................................................................................................................................................G---TTCCTCATCTCACCTTGCCT.....................................................................................21190.051010000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCC......................................................................................21190.051010000
...............................................................................................................................................................................................................................................................................................................................GGG---TTCCTCATCTCACCTTGCCTT....................................................................................24190.051010000
................................................................................................................................................................................................................................................................................................................................GG---TTCCTCATCTCACCTTGCCT.....................................................................................22190.051010000
...........................................................................................................................................................................................................................................................................................................................TCTTGGG---TTCCTCATCTCACCTTGCC......................................................................................26190.051010000
.............................................................................................................................CAC-AACGTTCCC-------CCTCGTTTT....................................................................................................................................................................................................................................................................................21200.051010000
..............................................................................................................................................................................................................................................................................................................................TGGG---TTCCTCATCTCACC...........................................................................................18200.051010000
...........................................................................................................................................................................................................................................................................................................................TCTTGGG---TTCCTCATCTCACCT..........................................................................................22200.051010000
droWil2
TTTT------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTTCTGCGTTTAATTAAGAC-CTCCTAGTTCTTGGCCTGGT-------------------------------CGACATCC-------------------------------------------------------------------------------------------------------------------------CCCCCTCCCTCATTAGTTGGCTGTTGCTAGCT--------TGG--T--------------------CTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTGT---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTATTTTTAGGTTTTGCAGTAACGCTATTTTCATATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------TTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------..27233.00660060211000002000000010028362010341151214000000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CT........................................................................................................................................................................................2426.5013000100000000000000001000011300002000310000000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------T.2826.0012000000000000000000000000003200000023100100000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--.......................2625.5011003000000021000000000000000100010020010000000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------TT2922.505000000000000000000000000000000001012010000000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----..........................................................................................................................................................................................2221.002000000000000000000000000000000000100000100000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------..........................2521.002001000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................ATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------TT2820.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------..2620.501001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCT...............................................................................................................................................................................................2120.501000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------G--C--------------------C.2820.501001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TATAATCCCTCTCCTTGAGCTT----CTC-------------------------------------------------------------------------------------------------------------------------------------------------------------..........................2520.501000000000000000000000000100000000000000000000000000000000000000
.....................T---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACA..........................................................................................................................................................................................................................................................18200.204004000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TTTGATTTCCCTGAACAT--TATTATTT...............................................................................................................................................................................................................................................26200.153000000000000000000000000200010000000000000000000000000000000000
..........................................................................................................................................................................TCCCTGAACAT--TATTATTTTTAGGT.........................................................................................................................................................................................................................................25200.153000000000000000000000000000030000000000000000000000000000000000
........................................................................................................................................................................TTTCCCTGAACAT--TATTATTTTTAGGT.........................................................................................................................................................................................................................................27200.153000000000000000000000000000030000000000000000000000000000000000
.....................T---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTAT.................................................................................................................................................................................................................................................25200.102000000000000000000000001100000000000000000000000000000000000000
........................................................................................................................................................................TTTCCCTGAACAT--TATTATTTTTAGG..........................................................................................................................................................................................................................................26200.102002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TTTGATTTCCCTGAACAT--TATTAT.................................................................................................................................................................................................................................................24200.102000000000000000000000000010000001000000000000000000000000000000
..GT---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAAC...........................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000001
....................AT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACA..........................................................................................................................................................................................................................................................19200.051000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................TTTGATTTCCCTGAACAT--TATTATTTT..............................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
...................TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TAT....................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................ACAT--TATTATTTTTAGGTTTT......................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.TGT---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TA.....................................................................................................................................................................................................................................................26200.051000000000000000000000000010000000000000000000000000000000000000
.....................T---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTATTT...............................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
...T---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTAT.................................................................................................................................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
.....................T---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--.......................................................................................................................................................................................................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
...T---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACA..........................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................TGAACAT--TATTATTTTTAGGTTT.......................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................TCCCTGAACAT--TATTATTTTTAGGTTC.......................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
...................TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTA..................................................................................................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
...................TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTATT................................................................................................................................................................................................................................................28200.051000000000000000000000000000000010000000000000000000000000000000
...................TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TATTAT.................................................................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................TTTCCCTGAACAT--TATTAT.................................................................................................................................................................................................................................................19200.051000000000001000000000000000000000000000000000000000000000000000
....................AT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--.......................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
...................TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--.......................................................................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................TTTCCCTGAACAT--TATTA..................................................................................................................................................................................................................................................18200.051000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................TGATTTCCCTGAACAT--TATTATTT...............................................................................................................................................................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
...................TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACA..........................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
TTGT---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAACAT--TAT....................................................................................................................................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
...T---------------TAT---------------------------------------------------------------------------------------------------------------------------------------------TTTGATTTCCCTGAAC...........................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GAATGA-GTATTCCGC----AGTCGGTAACGCCCGACTGCAACGTTC-TTACTTGTTTTT---------------------------------------------------------------------------------------------TTTTGTTTTTTTTTTTTTTTGTAACAGT--TTTTCTTTT----------------------------AAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....A-GTATTCCGC----AGTCGGTAACGCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
..........................TAACGCCCGACTGCAACGTTC-..............................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
................................CCGACTGCAACGTTC-TTACTTGTT.....................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...............................CCCGACTGCAACGTTC-TTACTTGT......................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
GAATGA-GTATTCCGC----AGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...TGA-GTATTCCGC----AGTCGGTAACGCCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
............................ACGCCCGACTGCAACGTTC-..............................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
droGri2
GACTGTAATGGGGTGGCAG-T----------------------------------------------------------------------------------------A-----TTT---GGCTCACTGAATTTGGC-------ATTATTTGTTTCTGTATTGTTGTTTTTAATTACTTT--TTCTGGCTCTTGTTTTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AACTGCAAGGGTATATCAA-C----------------------------------------------------------------------------------------------TTCGGCTCCGCC-CGAAGTTAGC-------TTTCCTTTCTTGTTTTTTTTTAACTCTAACAACCAT--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........TATATCAA-C----------------------------------------------------------------------------------------------TTCGGCTCCGCC-..............................................................................................................................................................................................................................................................................................................21200.102000002
.................................................................................................................................GAAGTTAGC-------TTTCCTTTCTTG.................................................................................................................................................................................................................................................................................21200.051100000
...........TATATCAA-C----------------------------------------------------------------------------------------------TTCGGCTCCGCC-CGAAGT........................................................................................................................................................................................................................................................................................................27200.051100000
..............ATCAA-C----------------------------------------------------------------------------------------------TTCGGCTCCGCC-CGA...........................................................................................................................................................................................................................................................................................................21200.051000001
droBip1
AACTGCAAGGGTGTATAAA-C----------------------------------------------------------------------------------------------TTCGGCTCCGCC-CGAAGTTAGC-------TTTCCTTTCTTGTATTTTTTTGTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGTGTAAGGGGGCGGCGG-C----------------------------------------------------------------------------------------------GGCGGCGTTTCC-CAACTCACACTTTCCTCCCCCGTTTTTGTTTTATTTTT----TTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGG---------------CGGCCTAAACAACACAATTAAG--------------------------------------------------------------------------------------------------------ACCCGTTTACATTTTTTTTTTGGTTTTTATTACCAT--TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATAA---------------C-----------------------GTTTTTC-----------------------------------------------------------------------------------------------ACTTGTTTTTATGTCTTTTTTGTTTTTGATCTCCAG--TTCTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTTT---------------C-----------------------------G-----------------------------------------------------------------------------------------------TTTTGTTTTTTTCTTTTTTCTGTTTTTGGG-GGCTCT-GCCCACTTCAA--TGGCCCCTCGTCCTCA------------------------GCCT----CGTCCTTTTGGCCCG---------------------------------TGTGTGTGGTCAGCTTATGGTAAGGCAAGGCTTTTCGTATTTCCGTATTGAGCACCCTTTTAGCGCAGCCCCGGCTCCC-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCGT---------------TTT-------------------------------------TTTTGTTTTTATTAATTTTATGTTAAATTTTACTTTCTTCAGAAAGTTACATTTTCCC-----------------------------------------------------------------------------------------------------------------------------------GATGAATCTAGTATTCCTTCATCGGTTTGAATGTTC---------AAATCTTGT----------------------------------------------------------------------------------------------------AAA--CCTA-----------------CCSizeHit CountTotal NormTotal
No Reads
droTak1
TGCAAAATTACAAC---GT-C----------------------------------------------------------------------------------------------AACATGGGCTTAC-AGCTTT-----------TTCGCTTTTTCTGCTTTTTTGCTTTTGCTCGACTA--TTTTGCTCTTTTGTCTGGC-------------------------------C----------------------ATTCGA-----------------CATTTCATTA-----------------------------------------------------------------------------------------------------GGCC--------GAC--CCCG-----------------CGSizeHit CountTotal NormTotal
No Reads
droEug1
TTGC---------------C-----------------------------------------------------------------------------------------------------------------------------ATTCGCTTCTTCTGTTTTTTTGGTTTTTTTTAATTT--TTTTATTTT-GGGTTTCTCCCTGCTGTTG-----------------------------------------ATTTTGCGC-----------------CTTTGTTTTG-----------------------------------------------------------------------------------------------------GGTC--------GAA--T--------------------CTSizeHit CountTotal NormTotal
No Reads
dm3
ACTT----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTTTGTATTATTTTAATAACCAT--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................TTATTTGTTTGTATTATTTTAATAACC...........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TTGTTTGTATTATTTTAATAACCAT--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCGATTTATTTGTTTGTATTATTTT..................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTT----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTTTG...........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TT----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGT..............................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTCGATTTATTTGTTTGTATT.......................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...T----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTT.............................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..TT----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTT.............................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CGC-------TTTCGATTTATTTGTTTG...........................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.CTT----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTTTGT..........................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TCGC-------TTTCGATTTATTTGTTTGT..........................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..TT----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTTTGTAT........................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...T----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTTTT...........................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...T----------------------------------------------------------------------------------------------------------------------------------TCGC-------TTTCGATTTATTTGTTTGTAT........................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droSim2
TGTAATGGGTATCCGTT---A----------GTCGACCACAGCGTTC-TC-----------------------------------------------------------------------------------------------CCTTGTTTTATTTTTTTTTTTTTTTTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CTGA---------------TAGTCGG-GAAACTCGACTATAGCGTTC-TC-----------------------------------------------------------------------------------------------CCTTGTTTTCTTTGTTTGTTTGTGCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................CGACTATAGCGTTC-TC-----------------------------------------------------------------------------------------------CCTTGT.......................................................................................................................................................................................................................................................................................2220.5010100
.......................CGG-GAAACTCGACTATAGCG..................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100
..GA---------------TAGTCGG-GAAACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
droYak3
CAGA---------------TAGTCGG-GGAACTCGACTATAGCGTTC-TCTCTTGTTTTT---------------------------------------------------------------------------------------------TTTTTATTTTTGCCATTTTTGTTGCACT--GGTTTCGTC----------------------------GGGGTC---TTTCAGCGGTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------A--C--------------------TCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CTTTGCTTTATTAT-------------------------------------------------------------------------------------------------------------------------------------------------TGAATTTTGTCTTAGTGCAGCT--TCCTGCTTCTAGATCTGGC-------------------------------GGCCTCTGGCCTCCGTGTGTGCCTCGTGTTG---------------------------------------------------------------------------------------------------------------------GCAGTTGGC-ACT--------TGGCAT--------------------TGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:27 AM