ID:

dps_1763

 Coordinate:

Unknown_group_120:12614-12764 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.1 -17.1 -16.2 -16.2

Flybase annnotation

CDS [Dpse\GA27785-cds]; exon [dpse_GLEANR_6922:2]; intron [Dpse\GA27785-in]

Repeatable elements

NameClassFamilyStrand
Nobel_I-intLTRPao+
Nobel_I-intLTRPao+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGCTGGTTTAAATGCAAGCCTCGATTGTGGACGCAACTCATGAGGAATTTACCCGTAGATCGACTGCGTGCTCTCCGCCCACTTTCATTTTCCGTGGACCAGTGCTCACGAAATTGTAAATTCCCGGATGGCCGACCGAAGGACCGCTTTTTGTTTGTTTTGCGTCCACAACGCCCTAACACCCGGGCATCTGCTTAAAGGCGGGTCTTTCTTCGCCCGTCAGCACTGCGGACTCCAGACCAGTAGAGTC
*******************************************************...........((......((((........((.(((.(((((........)))))))).))........))))..)).********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 M059
embryo
 SRR902010
ovaries
 GSM343916
embryo
 V112
male body
.......................................................GTAGATCGACTGCGTGCTCTCCG............................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................GTAGATCGACTGCGTGCTCTCCGC............................................................................................................................................................................ 24 0 1 2.00 2 0 1 0 1 0 0
...............CAAGCCTCGATTGTGGACGCAAC..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.........................................TGAGGAATTTACCCGTAGATCGACTGC....................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................TCACGAAATTGTAAATTCCCGGATGGCC..................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0
.........................................................AGATCGACTGCGTGCTCTCCG............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................TTGTAAATTCCCGGATGGCCGA................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................GGCCGACCGAAGGACCGCTTTTTG................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................CAGCACTGCGGACTCCAGACCA........ 22 0 1 1.00 1 1 0 0 0 0 0
..........................................GAGGAATTTACCCGTAGATCGACTG........................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................GTAGATCGACTGCGTGCTCTCCGCC........................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................TCCCGGATGGCCGACCGAAGGAC.......................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................TGGCCGACCGAAGGACCGCTTTTC.................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TACCCGTAGATCGACTGCGTGCTCT................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
..........AAATGCAAGCCTCGATTGTTGACG......................................................................................................................................................................................................................... 24 1 11 0.27 3 3 0 0 0 0 0
...........AATGCAAGCCTCGATTGTTGACGC........................................................................................................................................................................................................................ 24 1 11 0.27 3 2 0 0 0 1 0
.................................................TTACCCGTAGATCGACTCCGTGC................................................................................................................................................................................... 23 1 10 0.20 2 2 0 0 0 0 0
.................................................TTACCCGTAGATCGACTCCGTGCT.................................................................................................................................................................................. 24 1 8 0.13 1 1 0 0 0 0 0
..........AAATGCAAGCCTCGATTGTTGACGCAAC..................................................................................................................................................................................................................... 28 1 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................................................TTTTGTTTGTTTTGCGTCCA.................................................................................. 20 0 10 0.10 1 1 0 0 0 0 0
...........AATGCAAGCCTCGATTGTTGAC.......................................................................................................................................................................................................................... 22 1 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................GTTAGCACTGCGGACTCT.............. 18 2 11 0.09 1 0 0 0 0 1 0
..........AAATGCAAGCCTCGATTGTTGACGC........................................................................................................................................................................................................................ 25 1 11 0.09 1 0 0 0 0 0 1
..........AAATGCAAGCCTCGATTGTTGA........................................................................................................................................................................................................................... 22 1 12 0.08 1 0 0 0 1 0 0
...........AATGCAAGCCTCGATTGTTGA........................................................................................................................................................................................................................... 21 1 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................................................CCACAACGCCCTTCCAACC.................................................................. 19 3 20 0.05 1 0 0 0 0 1 0
......................................................................TATCTCCGCCCGCTTTCAT.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CGCGACCAAATTTACGTTCGGAGCTAACACCTGCGTTGAGTACTCCTTAAATGGGCATCTAGCTGACGCACGAGAGGCGGGTGAAAGTAAAAGGCACCTGGTCACGAGTGCTTTAACATTTAAGGGCCTACCGGCTGGCTTCCTGGCGAAAAACAAACAAAACGCAGGTGTTGCGGGATTGTGGGCCCGTAGACGAATTTCCGCCCAGAAAGAAGCGGGCAGTCGTGACGCCTGAGGTCTGGTCATCTCAG
*********************************************************************************************************************...........((......((((........((.(((.(((((........)))))))).))........))))..)).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 SRR902011
testis
 V112
male body		 GSM343916
embryo
 M059
embryo
 GSM444067
head
..................................................................................................................................................CGAAAAACAAACAAAACGCAGGT.................................................................................. 23 0 9 18.11 163 96 20 46 0 0 1 0
................................................................................................................................................GGCGAAAAACAAACAAAACGCAGGT.................................................................................. 25 0 1 5.00 5 0 0 5 0 0 0 0
.................................................................................................................................................GCGAAAAACAAACAAAACGCAGGT.................................................................................. 24 0 6 4.83 29 11 15 2 1 0 0 0
...................................................................................................................................................GAAAAACAAACAAAACGCAGGT.................................................................................. 22 0 9 3.89 35 17 14 4 0 0 0 0
....................................................................................................................................................AAAAACAAACAAAACGCAGGT.................................................................................. 21 0 10 1.20 12 6 3 3 0 0 0 0
..........................................................CTAGCTGACGCACGAGAGG.............................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................GGATTGTGGGCCCGTAGACGAAT..................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................CGGGCAGTCGTGACGCCTGAGGTCT........... 25 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GGGCAGTCGTGACGCCTGAGGTCTGG......... 26 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................GGCATCTAGCTGACGCACGAGA................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................GAAGCGGGCAGTCGTGACGCCTGAGGT............. 27 0 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................................................CTGGCTTCCTGGCGAAAAACAA............................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TGTCGTGACGCCTGAGGTCT........... 20 1 1 1.00 1 0 1 0 0 0 0 0
.................TCGGAGCTAACACCTGCGTTGAGTACT............................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
..................................................................................GAAAGTAAAAGGCACCTGGT..................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0
..................................................................................................................................................AGAAAAACAAACAAAACGCAGGT.................................................................................. 23 1 9 0.78 7 4 1 1 0 0 0 1
..................................................................................................................................................CGAAAAACAAGCAAAACGCAGGT.................................................................................. 23 1 9 0.56 5 3 0 2 0 0 0 0
.....................................................................................................................................................AAAACAAACAAAACGCAGGT.................................................................................. 20 0 10 0.50 5 3 1 1 0 0 0 0
..................................................................................................................................................CGAAAAACAAACAAAACGCAGG................................................................................... 22 0 9 0.44 4 0 4 0 0 0 0 0
..................................................................................................................................................................TTCAGGTGTTGCGGGATT....................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................GAGAAAGACGCGGGCAGTGGT......................... 21 3 3 0.33 1 0 0 0 1 0 0 0
................................................................................................................................................TGCGAAAAACAAACAAAACGCAGGT.................................................................................. 25 1 6 0.33 2 0 1 0 1 0 0 0
..................................................................................................................................................TGAAAAACAAACAAAACGCAGGT.................................................................................. 23 1 10 0.20 2 1 1 0 0 0 0 0
......................................................................................................................................................AAACAAACAAAACGCAGGT.................................................................................. 19 0 11 0.18 2 0 2 0 0 0 0 0
.................................................................................................................................................GCGAAAAACAAACAAAACGCAGG................................................................................... 23 0 6 0.17 1 0 1 0 0 0 0 0
.................................................................................................................................................GTGAAAAACAAACAAAACGCAGGT.................................................................................. 24 1 6 0.17 1 0 1 0 0 0 0 0
................................................................................................................................................AGCGAAAAACAAACAAAACGCAGGT.................................................................................. 25 1 7 0.14 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AAGAAACAGGCAGTCATGAC...................... 20 3 8 0.13 1 0 0 0 0 1 0 0
.......................................................TATCTAGCTGAGGCACGAGAGGCG............................................................................................................................................................................ 24 2 9 0.11 1 0 1 0 0 0 0 0
...................................................TGGGCATCTAGCTGAGGCACGAAAGG.............................................................................................................................................................................. 26 2 9 0.11 1 0 1 0 0 0 0 0
..................................................................................................................................................CGAAAAACAAACAAAACACAGGT.................................................................................. 23 1 9 0.11 1 1 0 0 0 0 0 0
...................................................................................................................................................GAAAAACAAACAAAACGCAGG................................................................................... 21 0 9 0.11 1 0 1 0 0 0 0 0
.............................CCTGCGTTGAGTACCCCTTAAA........................................................................................................................................................................................................ 22 1 10 0.10 1 0 0 0 1 0 0 0
.....................................................................................................................................................AAAACAGACAAAACGCAGGT.................................................................................. 20 1 20 0.10 2 1 0 1 0 0 0 0
..................................................................................................................................................TGAAAAACAAACAAAACGCAGG................................................................................... 22 1 10 0.10 1 0 1 0 0 0 0 0
....................................................................................................................................................AAAAACAGACAAAACGCAGGT.................................................................................. 21 1 20 0.10 2 0 0 2 0 0 0 0
...........TTACGTTCGGAGCTAACAACTGCGT....................................................................................................................................................................................................................... 25 1 11 0.09 1 0 1 0 0 0 0 0
.......................................................................................................................................................AACAAACAAAACGCAGGT.................................................................................. 18 0 12 0.08 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TCCGGTAGACGAATTTGCG................................................ 19 3 15 0.07 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................AGTCGTGACGCCTGAGGCCT........... 20 1 15 0.07 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................AATCGTGACGCCTGAGGCCT........... 20 2 15 0.07 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................AAACGTGACGCCTGAGGCCTGGT........ 23 3 15 0.07 1 0 1 0 0 0 0 0
...................................................................GCACGAGAGGCGGGTAAAAGTA.................................................................................................................................................................. 22 1 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................................................ACAACAGACAAAACGCAGGT.................................................................................. 20 2 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................................................AAAACAGACAGAACGCAGGT.................................................................................. 20 2 20 0.05 1 0 0 1 0 0 0 0
..................................................................CGCACGAGAGGCGGGTAAAATT................................................................................................................................................................... 22 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_120:12564-12814 + dps_1763 GCGCTGGTTT-AAATGCAAGCCTCGATTGTGGACGCAACTCATGAGGAATTTACCCGTAGATCGACTGCGTGCTCTCCGCCCACTT--------------------------TCATTTTCCGTGGACCAGTGCTCACGAAATTGTAAATTCCCGGATGGCCGAC---------CGA-----AGGACCGCTTTTTGTTTGTTTTGCGTCCACA-----------------------------------------------------------ACGCCCT-----------------------------------AACACCCGGG-CATCTGCTTAAAGGCGGGTCTTTCTTCGCC-CGTCAGCACTGCGGACTCCAGACCAGTAGAGT-C
droPer2 scaffold_78:247693-247943 - GCGCTGGTTT-AAATGCAAGCCTCGATTGTGGACGCAACTCATGAGGAATTTACCCGTAGATCGACTGCGTGCTCTCCGCCCACTT--------------------------TCATTTTCCGTGGACCAGTGCTCACGAAATTGTAAATTCGCGGAAGGCCGAC---------CGA-----AGGACCGCTTTTTGTTTGTTTTGCGTCCACA-----------------------------------------------------------ACGCCCT-----------------------------------AACACCCGAG-CATCTGCTTAAAGGCGGGTCTTTCATCGCC-CGTCAGCACTGCGGACTCCAGACCAGTAGAGT-C
droWil2 scf2_1100000004967:2975850-2976122 - ACTCTGTTTT-AAATACAAGCCACGTCATATGTCGCAAATAATGGGAAATTCT---GTAAAGCACCTA---------------CTC-CTACGGACGGTAGCC------AAC--------------------GC--------------C---------AG----CCTAACAGCAGAGGAGATGGTGACGGTGCTAGTGGCAGTTGAGGTCACATTAAACTCCACGCCACTCGAGGCAATAAGACAGGACA------GGACAGAACGACGGCGAAGCCAT-----------------------------------AACACCCGGG-CACCTGTTGGTCGGACGACCGCTGAGGGTACTGCCGCACCAGGGGACTCCGGACGAGGAGAGT-C
droVir3 scaffold_13045:34504-34701 - CCGTTGCTTT-TAATGCAAACCTCGTCTTCCAGCACAAATTATGAGGAATTTACCTGCAGATCGACTCCGAGCGCTCCGCCCATTTCCTG-------TCTGT------GGCGTCGATTATTGTAGCCCAATTCGCACAACCTTTCGAAAGCGTGGAAAGCCTAAGATTAAGTCATA-----CATATCATTATTTGTTTGCCTTGCCTCCAAG--------------------GCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6110:13646-13762 - GCACTGTGTG-CGCTACAAGCCAAAGTTGCAACAGCAACTCATGGGAAATCTGCCTGTAGAGCGATTGACGCCATCGAGACCTTTCGCTC-------ACTGT------GGAGTTGACTTTTGTGGACCAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13082:216633-216895 + AAGCTGTTTTGAAATGCAAGCCTCATCTGATGACTCAAATCATGGGAGATTTACCCTTAGATCGAATCCGTGCTCTCCGCCCATTTTCCA-------TATGT------G----------------CCCTATTGAAACCACATTGAAAATTCGTGGTAGGCCACCCTACAAGTCGAA------------------------------TCCAAA--------------------AGGATGCAGTCAGGACC----------CAAGCGACGGCAAGGCGTT-----------------------------------GACTTCCGTG-CTTTTGTTGACAGGCGGGCCGCTCATCGACCCACCAGAACCACGGACCCCGGACCAGCAGGGT-C
droBip1 scf7180000395673:5348-5605 + G--CTGCTTT-AAATGCAAGCCTCGTCTGATGACTCAAATCATGGGTGATTTACCCTTAGACAGAATTCGTGCTCTCCGCCCATTCTCCA-------TATGT------GGTGTTGATTTTTGTGGCCCTATTGATACGACATTAAAAACTCGTGGTAGGCCACCCTATAAGTCCTA-----CATTGG------------------------------------------------------------------------CAAGCGACGGCGAGGCGCT-----------------------------------TACTCCCGGG-CACCTGTTGACAGGCGGGCCGCTCATCGCCCCACCAGCACCGCGGACCCCGGACCAG-CGGGT-C
droKik1 scf7180000302520:5292-5557 - GCGCTGCTTC-AAGTGCAAGCCCCCACTCATGACACAAATTATGGGAAATTTAGCCGCACCTA--------------------CTC-CTATGAGCGGTGGGC------AGC--------------------GC--------------G---------CT----CCTAAACGCAGAAGAGCAGGGGACAGTCCTCGTCGGGATTGAGGCCCTGATGAACTCGCGACCTCTCAGAGCTCTCAGCTAGGAC-----------CAAGCGACGGAGAGGCGCT-----------------------------------CCCTCCATTA-CACCTGCTGACAGGCGGGCCCCTAGTCGCAGCGCCAGCATTCCGGACCCCGGAACAGGCGGGT-C
droFic1 scf7180000453769:37312-37648 - TCGCTGCTTT-AAATGCAAGCCTCGACTAATGACACAAATTATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTC-GCCCATTTAGTA-------TCTGT------GGCGTTGATTTTTGCGGCCCCGTCTGTACGACATTGAAAATTCGTGGAAGGCCTCCTTATAAGTCCTA-----CATAGCGCTTTTTGTTTGTTTTGCGTCCAAA--------------------GCGGTTCATCTAGAAATTGTTTCAGATTTAACCA----------CTAACTCCTTTTTATTGGCTTTCCAAAGGTTCGTTGGGACGCCCGGG-CACCTGCTGACAGGCGGGCCACTATTCCCCATCCCAGCACTCCGGACCCCGGACCAGGCGGGT-C
droEle1 scf7180000490498:12600-12844 - GAGCTGCTTT-CTCTGCAAGCCACAACTCTTGACGCAAATTATGGGGAACTTGCCAGCAGATAGACTTCGAGCTCTCCGCCCCATCAATA-------TTTGT------GGTGTTGATTTTTGTGGTCCCTTCAGCACAACGTATCGTATCCGTGGTCAGCCACCGTACAAGTCATA-----CGAA----------------------------------------------------------------------------------------GCCCT-----------------------------------GACACCCGGT-CATCTGCTCATCGGTGGCCCTCTTCTGGCCCCACCATCAGCGGCGCTCCTGGACCAGATCAGG-C
droRho1 scf7180000777802:3128-3414 + ACGCTGCTTT-AAGTGTAACCCTCGACTAATGACACAAATTATGGGAAATTTACCCGCAGATCGTCTCTGTGCTCTCCGCCCATTTGCTA-------TATGT------GGCGTCGATTTTTGTGGCCCTGTCTATACGACATGGAAAATTCGTGGTAGGCCTCCGTATAAGTCCTA-----CATTGCGGTCTTCGTTTGTTTTGCGTCCAAA--------------------GCGGTTCATCTAGAAGTTGTTTCAGATTTAACCA----------CAGATTCCTTTTTATTGGCTTTTCAAAGGTTCGTTGG-----------------------------GCGCCGAG--------------GATGT-CCCC---------AAGTCG
droBia1 scf7180000302519:175508-175709 - ACGCTGCTTC-AAGTGTAAGCCTCGACTGATGACACAAATTATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTTGCTA-------TATGTTGATTTGGCGTCGATTTTTGTGGCTCTGTTTATACAGAACTTAGAATTCATGATAGGCTTTCATACAAGTCCTA-----CATTGCGCTTTATGTTTGTTTTACGTCCAAG--------------------GCG----------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000410847:12284-12532 - TCGCTGCTTC-AAGTGCAAGCCTCGACTGATGACACAAATTATGGGAAATTTACACGCAGATCGTCTCCGTGCTCTCCGCCCATTTTCTA-------TATGT------GGCATTGATTTTTGTGGCCCTGTCTATACAACACTGAAAATTCGTGGTAGGCCTCCGTATAAGTCCCA-----CATTGCGCTCTTTGTTTGTTTCGCGTTCAAG--------------------GCGGTTCATCTAGAAGTTGTTTCAGATTTA----------------------------------------------------------------------------------------------------ACCACAGATTCCTTTTTATTGGCAT-T
droEug1 scf7180000409858:1436-1663 + GCGCTGCTTC-CGATGCAAGCCGCATTTTTTGACGCAAATAATGGGGAACTGGCCATCAGATAGACTTCGAGCTCTCTC----TCTAATA-------TTTGT------TGCGTTGATTTCTGTGGACCATTGAGCAGAACCTATCGTATTCATGG---------GCACAAGTCGTA-----CATGGCCTTGTTTGTGTGTTTTGCATCCAAA--------------------AC------------------------------------------------------------------------------------------------------------CCGCTGTTGGCTCCACCAACGTCGTCGCTCCCGGACCAGGCTAGC-C
dm3 chrU:488996-489162 + GCGCTGTTCT-AAATGCAAGCCTCGACTGATGGGA-AATCTATGGGAAATCTACCCGCAGATAGACTCCTTCCTTACCT-TCATATGAAA-------TATTT------GGCGGTAATTTTTGTGG----------ACGACATTGAAAATTGGAGGAAGGTCTCCGTACAAGTCCTA-----C------------GTTTGTTTTGCGCCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 node_41272:346-531 + GCGCTGCTTC-AAATGCAAGCCTCGACTGATGACACAAATTATGGGAAATCTACCCGCAGATAGACTCCGTGCTCTCCGCCCATTTGCGA-------TATGT------GGCGTTGATTTTTGTGGCCCTGTCTATACGACATTAAAAATTCGAGGAAGGCCCCCGTATAAGTCCTA-----CGTTGCCTTATTTGTTTGTTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_99:81039-81211 + GCGCTTTTCT-AAAT-------------------ACACATTATGGGAAATCTTCCCGCAGATAGACTGCGAGAT--------------------------------------------------------------------------------------------------------------------------------------------GAACTCGCGGCGGCTTGGAGCTCTCAGCCAGGACC----------CAAGCGACGGAGACGCGAT-----------------------------------CACTCCCGAA-TACATGCTGACAGGTCGGCA-----TTGAAGAACCAGCACTCCGGATCCCGGATCAG----GT-C
droYak3 v2_chrUn_5506:4008-4287 - GAGCTGCTTC-AAATGCAAGCCTCGACTGATGACACAAATTATGGGAAATCTACCCGCAGATAGACTTCGTGCTCTCCGCCCATTTGCGT-------TATGT------GGCGTTTCTCAACGCCG-------------------------------------------------AAGAGCTGGCAACAGTCGTCGTCGGGATCGAGGCTGCAATGAACTCGCGGCCCCTTGTAGCGCTCAGCCAGGACC----------CAAGCGACGGAGAGGCGCT-----------------------------------AACTCCCAGGCCTTCTGCTGACAGGCGGGCCGCTCATTGCAGCACCAGCACTCCGGACCCCGGACCAGGCGGGT-C
droEre2 scaffold_4929:21730828-21731073 - GCGCTGCTTT-A-ATGCAAGCCTCTATGGATGACACAAATAATGGGAAATCTACCCCCAGATAGACTCCGTTCTCTCCGCCCCTTTGCGA-------TACGT------GGTGTTGATTTTTGTGGA---------AAGACAATGAAAATTTTACTAAGGCATCCGAACAAGTCCAA-----CGTTGCCTTATTTGTTTGTTTTTCATCCG----------------------GCGGATCACTTTGAGATTGTGTCA----------------------------------------------------------------------------------------GTTCATTGC---GACAACGCGATGAACTTCGTCGGAG-CGAGTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCGCTGGTTT-AAATGCAAGCCTCGATTGTGGACGCAACTCATGAGGAATTTACCCGTAGATCGACTGCGTGCTCTCCGCCCACTT--------------------------TCATTTTCCGTGGACCAGTGCTCACGAAATTGTAAATTCCCGGATGGCCGAC---------CGA-----AGGACCGCTTTTTGTTTGTTTTGCGTCCACA-----------------------------------------------------------ACGCCCT-----------------------------------AACACCCGGG-CATCTGCTTAAAGGCGGGTCTTTCTTCGCC-CGTCAGCACTGCGGACTCCAGACCAGTAGAGT-CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................GTAGATCGACTGCGTGCTCTCCG......................................................................................................................................................................................................................................................................................................................2312.0020200000000
........................................................GTAGATCGACTGCGTGCTCTCCGC.....................................................................................................................................................................................................................................................................................................................2412.0020000000110
................CAAGCCTCGATTGTGGACGCAAC..............................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........................................TGAGGAATTTACCCGTAGATCGACTGC................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.....................................................................................................................................TCACGAAATTGTAAATTCCCGGATGGCC....................................................................................................................................................................................................................................2811.0010010000000
..........................................................AGATCGACTGCGTGCTCTCCG......................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................TTGTAAATTCCCGGATGGCCGA..................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................GGCCGAC---------CGA-----AGGACCGCTTTTTG..................................................................................................................................................................................................2411.0010000000010
......................................................................................................................................................................................................................................................................................................................................................................CAGCACTGCGGACTCCAGACCA.........2211.0010100000000
...........................................GAGGAATTTACCCGTAGATCGACTG.................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........................................................GTAGATCGACTGCGTGCTCTCCGCC....................................................................................................................................................................................................................................................................................................................2511.0010000000010
.....................................................................................................................................................TCCCGGATGGCCGAC---------CGA-----AGGAC...........................................................................................................................................................................................................2311.0010010000000
............................................................................................................................................................TGGCCGAC---------CGA-----AGGACCGCTTTTC...................................................................................................................................................................................................2411.0010000000010
...................................................TACCCGTAGATCGACTGCGTGCTCT.........................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................TTTTGTTTGTTTTGCGTCCA...................................................................................................................................................................................20100.1010100000000
droPer2
GCGCTGGTTT-AAATGCAAGCCTCGATTGTGGACGCAACTCATGAGGAATTTACCCGTAGATCGACTGCGTGCTCTCCGCCCACTT--------------------------TCATTTTCCGTGGACCAGTGCTCACGAAATTGTAAATTCGCGGAAGGCCGAC---------CGA-----AGGACCGCTTTTTGTTTGTTTTGCGTCCACA-----------------------------------------------------------ACGCCCT-----------------------------------AACACCCGAG-CATCTGCTTAAAGGCGGGTCTTTCATCGCC-CGTCAGCACTGCGGACTCCAGACCAGTAGAGT-CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................CAACTCATGAGGAATTTACCCG............................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................AACTCATGAGGAATTTACCCGTA..........................................................................................................................................................................................................................................................................................................................................2311.001010000
...................................CAACTCATGAGGAATTTACCCGTAGATC......................................................................................................................................................................................................................................................................................................................................2811.001010000
droWil2
ACTCTGTTTT-AAATACAAGCCACGTCATATGTCGCAAATAATGGGAAATTCT---GTAAAGCACCTA---------------CTC-CTACGGACGGTAGCC------AAC--------------------GC--------------C---------AG----CCTAACAGCAGAGGAGATGGTGACGGTGCTAGTGGCAGTTGAGGTCACATTAAACTCCACGCCACTCGAGGCAATAAGACAGGACA------GGACAGAACGACGGCGAAGCCAT-----------------------------------AACACCCGGG-CACCTGTTGGTCGGACGACCGCTGAGGGTACTGCCGCACCAGGGGACTCCGGACGAGGAGAGT-CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CCGTTGCTTT-TAATGCAAACCTCGTCTTCCAGCACAAATTATGAGGAATTTACCTGCAGATCGACTCCGAGCGCTCCGCCCATTTCCTG-------TCTGT------GGCGTCGATTATTGTAGCCCAATTCGCACAACCTTTCGAAAGCGTGGAAAGCCTAAGATTAAGTCATA-----CATATCATTATTTGTTTGCCTTGCCTCCAAG--------------------GCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GCACTGTGTG-CGCTACAAGCCAAAGTTGCAACAGCAACTCATGGGAAATCTGCCTGTAGAGCGATTGACGCCATCGAGACCTTTCGCTC-------ACTGT------GGAGTTGACTTTTGTGGACCAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................TGGGAAATCTGCCTGTAGAGCGATT..................................................................................................................................................................................................................................................................................................................................2551.608700001
....................................................................................................GT------GGAGTTGACTTTTGTGGACCAG...................................................................................................................................................................................................................................................................24100.909420003
..........................................TGGGAAATCTGCCTGTAGAGC......................................................................................................................................................................................................................................................................................................................................2160.835500000
....................................................................................................GT------GGAGTTGACTTTTGTGGACC.....................................................................................................................................................................................................................................................................22100.707300031
....................................................................................................GT------GGAGTTGACTTTTGTGGACCA....................................................................................................................................................................................................................................................................23100.606600000
..........................................TGGGAAATCTGCCTGTAGAGCGA....................................................................................................................................................................................................................................................................................................................................2350.603300000
..........................................................................TCGAGACCTTTCGCTC-------ACTGT------GGAGT....................................................................................................................................................................................................................................................................................2690.333200001
..........................................TGGGAAATCTGCCTGTAGAGCGATTG.................................................................................................................................................................................................................................................................................................................................2650.201100000
...................................................TGCCTGTAGAGCGATTGACGCCATCG........................................................................................................................................................................................................................................................................................................................2650.201100000
...................................................TGCCTGTAGAGCGATTGACGCCATCGAG......................................................................................................................................................................................................................................................................................................................2850.201100000
..........................................TGGGAAATCTGCCTGTAGAGCG.....................................................................................................................................................................................................................................................................................................................................2260.171100000
...........................TGCAACAGCAACTCATGGGAAATCTG................................................................................................................................................................................................................................................................................................................................................2670.141100000
...........................................................GAGCGATTGACGCCATCGAGACC...................................................................................................................................................................................................................................................................................................................2370.141000010
..............TACAAGCCAAAGTTGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................2290.111100000
............................................................................................................GGAGTTGACTTTTGTGGACC.....................................................................................................................................................................................................................................................................20100.101100000
....................................................................................................GT------GGAGTTGACTTTTGTGGA.......................................................................................................................................................................................................................................................................20100.101100000
.....................................................................................................T------GGAGTTGACTTTTGTGGAC......................................................................................................................................................................................................................................................................20100.101010000
...................................................................................................TGT------GGAGTTGACTTTTGTGGACC.....................................................................................................................................................................................................................................................................23100.101000010
.....................................................................................................T------GGAGTTGACTTTTGTGGACCAG...................................................................................................................................................................................................................................................................23100.101100000
....................................................................................................GT------GGAGTTGACTTTTGTGGACCAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------25100.101000001
....................................................................................................GT------GGAGTTGACTTTTGTGGACCAA...................................................................................................................................................................................................................................................................24100.101100000
droAna3
AAGCTGTTTTGAAATGCAAGCCTCATCTGATGACTCAAATCATGGGAGATTTACCCTTAGATCGAATCCGTGCTCTCCGCCCATTTTCCA-------TATGT------G----------------CCCTATTGAAACCACATTGAAAATTCGTGGTAGGCCACCCTACAAGTCGAA------------------------------TCCAAA--------------------AGGATGCAGTCAGGACC----------CAAGCGACGGCAAGGCGTT-----------------------------------GACTTCCGTG-CTTTTGTTGACAGGCGGGCCGCTCATCGACCCACCAGAACCACGGACCCCGGACCAGCAGGGT-CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................TCATCGACCCACCAGAACCACGGACCC................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................CGACCCACCAGAACCACGGACCCC...............2411.001010000
...........................................................................................................................................................................................................................................................................................................................................TGACAGGCGGGCCGCTCATCGAC...................................2311.001010000
..............................................................................................................................................................................................................................................................................AAGGCGTT-----------------------------------GACTTCCGTG-CTTTTG...........................................................2411.001100000
.................................................................................................................................................................................................................................................................................................................................TG-CTTTTGTTGACAGGCGGGCC.............................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................GTTGACAGGCGGGCCGCTCATCG.....................................23200.55111100000
...........................................................................................................................................................................................................................................................................GGCAAGGCGTT-----------------------------------GACTTCGT....................................................................1940.251000100
.......................................................CTTAGATCGAATCCGTGCTCTCCG......................................................................................................................................................................................................................................................................................................................24200.255500000
.......................................................CTTAGATCGAATCCGTGCTCTCCGC.....................................................................................................................................................................................................................................................................................................................25200.204400000
..............................................................................................................................................................................................................................................CAGTCAGGACC----------CAAGCGACGGCA......................................................................................................................2360.171100000
...................................................TACCCTTAGATCGAATCCGTGCTCTCC.......................................................................................................................................................................................................................................................................................................................27200.153120000
.......................................................CTTAGATCGAATCCGTGCTCTCCGCC....................................................................................................................................................................................................................................................................................................................26200.153210000
......................................................................................................................................................................................................................................................................................................................................TTTGTTGACAGGCGGGCCGCTC.........................................2280.131100000
......................................................................................................................................................................................................................................................................................................................................TTTGTTGACAGGCGGGCCGCT..........................................2190.111100000
.........................................................................................................................................................................................................................................................................................................................................GTTGACAGGCGGGCCGCTCA........................................20200.102200000
..........................................................................................................................................ACATTGAAAATTCGTGGTAGGCC....................................................................................................................................................................................................................................23200.051100000
.........................................................TAGATCGAATCCGTGCTCTCCGCCCAT.................................................................................................................................................................................................................................................................................................................27200.051100000
................................ACTCAAATCATGGGAGATTTACCC.............................................................................................................................................................................................................................................................................................................................................24200.051010000
.........................................................TAGATCGAATCCGTGCTCTCCGCCC...................................................................................................................................................................................................................................................................................................................25200.051100000
........................................................TTAGATCGAATCCGTGCTCTCC.......................................................................................................................................................................................................................................................................................................................22200.051100000
................................ACTCAAATCATGGGAGATTTACCCT............................................................................................................................................................................................................................................................................................................................................25200.051100000
...........AAATGCAAGCCTCATCTGATGACT..................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.........................................................TAGATCGAATCCGTGCTCTCCG......................................................................................................................................................................................................................................................................................................................22200.051100000
......................................................CCTTAGATCGAATCCGTGCTCTCCGCC....................................................................................................................................................................................................................................................................................................................27200.051010000
........................................................TTAGATCGAATCCGTGCTCTCCGC.....................................................................................................................................................................................................................................................................................................................24200.051001000
............................GATGACTCAAATCATGGGAGATT..................................................................................................................................................................................................................................................................................................................................................23200.051010000
...........................................................GATCGAATCCGTGCTCTCCGCCCAT.................................................................................................................................................................................................................................................................................................................25200.051100000
.......................................................CTTAGATCGAATCCGTGCTCTCCGCCC...................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................TTAGATCGAATCCGTGCTCTCCGCCC...................................................................................................................................................................................................................................................................................................................26200.051000010
........................................................TTAGATCGAATCCGTGCTCTCCG......................................................................................................................................................................................................................................................................................................................23200.051100000
................................................................................................................................................AAAATTCGTGGTAGGCCACCC................................................................................................................................................................................................................................21200.051010000
droBip1
G--CTGCTTT-AAATGCAAGCCTCGTCTGATGACTCAAATCATGGGTGATTTACCCTTAGACAGAATTCGTGCTCTCCGCCCATTCTCCA-------TATGT------GGTGTTGATTTTTGTGGCCCTATTGATACGACATTAAAAACTCGTGGTAGGCCACCCTATAAGTCCTA-----CATTGG------------------------------------------------------------------------CAAGCGACGGCGAGGCGCT-----------------------------------TACTCCCGGG-CACCTGTTGACAGGCGGGCCGCTCATCGCCCCACCAGCACCGCGGACCCCGGACCAG-CGGGT-CSizeHit CountTotal NormTotal
No Reads
droKik1
GCGCTGCTTC-AAGTGCAAGCCCCCACTCATGACACAAATTATGGGAAATTTAGCCGCACCTA--------------------CTC-CTATGAGCGGTGGGC------AGC--------------------GC--------------G---------CT----CCTAAACGCAGAAGAGCAGGGGACAGTCCTCGTCGGGATTGAGGCCCTGATGAACTCGCGACCTCTCAGAGCTCTCAGCTAGGAC-----------CAAGCGACGGAGAGGCGCT-----------------------------------CCCTCCATTA-CACCTGCTGACAGGCGGGCCCCTAGTCGCAGCGCCAGCATTCCGGACCCCGGAACAGGCGGGT-CSizeHit CountTotal NormTotal
No Reads
droFic1
TCGCTGCTTT-AAATGCAAGCCTCGACTAATGACACAAATTATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTC-GCCCATTTAGTA-------TCTGT------GGCGTTGATTTTTGCGGCCCCGTCTGTACGACATTGAAAATTCGTGGAAGGCCTCCTTATAAGTCCTA-----CATAGCGCTTTTTGTTTGTTTTGCGTCCAAA--------------------GCGGTTCATCTAGAAATTGTTTCAGATTTAACCA----------CTAACTCCTTTTTATTGGCTTTCCAAAGGTTCGTTGGGACGCCCGGG-CACCTGCTGACAGGCGGGCCACTATTCCCCATCCCAGCACTCCGGACCCCGGACCAGGCGGGT-CSizeHit CountTotal NormTotal
No Reads
droEle1
GAGCTGCTTT-CTCTGCAAGCCACAACTCTTGACGCAAATTATGGGGAACTTGCCAGCAGATAGACTTCGAGCTCTCCGCCCCATCAATA-------TTTGT------GGTGTTGATTTTTGTGGTCCCTTCAGCACAACGTATCGTATCCGTGGTCAGCCACCGTACAAGTCATA-----CGAA----------------------------------------------------------------------------------------GCCCT-----------------------------------GACACCCGGT-CATCTGCTCATCGGTGGCCCTCTTCTGGCCCCACCATCAGCGGCGCTCCTGGACCAGATCAGG-CSizeHit CountTotal NormTotal
No Reads
droRho1
ACGCTGCTTT-AAGTGTAACCCTCGACTAATGACACAAATTATGGGAAATTTACCCGCAGATCGTCTCTGTGCTCTCCGCCCATTTGCTA-------TATGT------GGCGTCGATTTTTGTGGCCCTGTCTATACGACATGGAAAATTCGTGGTAGGCCTCCGTATAAGTCCTA-----CATTGCGGTCTTCGTTTGTTTTGCGTCCAAA--------------------GCGGTTCATCTAGAAGTTGTTTCAGATTTAACCA----------CAGATTCCTTTTTATTGGCTTTTCAAAGGTTCGTTGG-----------------------------GCGCCGAG--------------GATGT-CCCC---------AAGTCGSizeHit CountTotal NormTotal
No Reads
droBia1
ACGCTGCTTC-AAGTGTAAGCCTCGACTGATGACACAAATTATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTTGCTA-------TATGTTGATTTGGCGTCGATTTTTGTGGCTCTGTTTATACAGAACTTAGAATTCATGATAGGCTTTCATACAAGTCCTA-----CATTGCGCTTTATGTTTGTTTTACGTCCAAG--------------------GCG----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCGCTGCTTC-AAGTGCAAGCCTCGACTGATGACACAAATTATGGGAAATTTACACGCAGATCGTCTCCGTGCTCTCCGCCCATTTTCTA-------TATGT------GGCATTGATTTTTGTGGCCCTGTCTATACAACACTGAAAATTCGTGGTAGGCCTCCGTATAAGTCCCA-----CATTGCGCTCTTTGTTTGTTTCGCGTTCAAG--------------------GCGGTTCATCTAGAAGTTGTTTCAGATTTA----------------------------------------------------------------------------------------------------ACCACAGATTCCTTTTTATTGGCAT-TSizeHit CountTotal NormTotal
No Reads
droEug1
GCGCTGCTTC-CGATGCAAGCCGCATTTTTTGACGCAAATAATGGGGAACTGGCCATCAGATAGACTTCGAGCTCTCTC----TCTAATA-------TTTGT------TGCGTTGATTTCTGTGGACCATTGAGCAGAACCTATCGTATTCATGG---------GCACAAGTCGTA-----CATGGCCTTGTTTGTGTGTTTTGCATCCAAA--------------------AC------------------------------------------------------------------------------------------------------------CCGCTGTTGGCTCCACCAACGTCGTCGCTCCCGGACCAGGCTAGC-CSizeHit CountTotal NormTotal
No Reads
dm3
GCGCTGTTCT-AAATGCAAGCCTCGACTGATGGGA-AATCTATGGGAAATCTACCCGCAGATAGACTCCTTCCTTACCT-TCATATGAAA-------TATTT------GGCGGTAATTTTTGTGG----------ACGACATTGAAAATTGGAGGAAGGTCTCCGTACAAGTCCTA-----C------------GTTTGTTTTGCGCCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............TGCAAGCCTCGACTGATGGGA-AATC.............................................................................................................................................................................................................................................................................................................................................................25122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000180000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GACTGATGGGA-AATCTATGGGAAATC..................................................................................................................................................................................................................................................................................................................................................26115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001070100000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000110000000000000000000000000
........CT-AAATGCAAGCCTCGACTGATGGGA-.................................................................................................................................................................................................................................................................................................................................................................26114.001400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........T-AAATGCAAGCCTCGACTGATGGGA-AA...............................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................ACTGATGGGA-AATCTATGGG.......................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAAGCCTCGACTGATGGGA-AATCTATG.........................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACTGATGGGA-AATCTATGGGAAATC..................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000200000000
........................................TATGGGAAATCTACCCGCAGATAGAC...................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........T-AAATGCAAGCCTCGACTGATGGGA-.................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000
......................................................................................................................TTTGTGG----------ACGACATTGAAAATTGGAG...........................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTGGAGGAAGGTCTCCGTACAAGTCC.......................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TT------GGCGGTAATTTTTGTGG----------ACG...........................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
............................................................................................................................G----------ACGACATTGAAAATTGGAG...........................................................................................................................................................................................................................................2012.0020000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TCCTTCCTTACCT-TCATATGAAA-------TA..................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTT------GGCGGTAATTTTTGTGG----------A.............................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.......TCT-AAATGCAAGCCTCGACTGATGGGA-.................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
...........AAATGCAAGCCTCGACTGATGGGA-.................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............TGCAAGCCTCGACTGATGGGA-AATCTAT..........................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................GACTGATGGGA-AATCTATGGGAAAT...................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAAGCCTCGACTGATGGGA-AATCTAT..........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................T------GGCGGTAATTTTTGTGG----------ACGACATT......................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CTACCCGCAGATAGACTCCTTCCTTA.........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAATTTTTGTGG----------ACGACATTGAAAAT................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TGCAAGCCTCGACTGATGGGA-AATCTA...........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AATTGGAGGAAGGTCTCCGTACAAGT.........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TATGGGAAATCTACCCGCAGATAGACT..................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCGACTGATGGGA-AATCTATGGGA......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................T-TCATATGAAA-------TATTT------GGCGGTAAT................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCGACTGATGGGA-AATCTATGGG.......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TTTTTGTGG----------ACGACATTGAAAATTGGAG...........................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AATTTTTGTGG----------ACGACATTGAA...................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TGG----------ACGACATTGAAAATTGGAGGAAA.......................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AA-------TATTT------GGCGGTAATTTTTGTGG----------AC............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCGACTGATGGGA-AATCTATGGGAAA....................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ATTT------GGCGGTAATTTTTGTGG----------ACGAC.........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GATGGGA-AATCTATGGGAAAT...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AAGCCTCGACTGATGGGA-AATCTATGG........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TATGAAA-------TATTT------GGCGGTAATTTT.............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGATGGGA-AATCTATGGGAAATCTAC...............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGTTCT-AAATGCAAGCCTCGACTGA.......................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CAAGTCCTA-----C------------GTTTGTTTTGCGCC.....................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TAGACTCCTTCCTTACCT-TCATATG..............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CTATGGGAAATCTACCCGCAGATAGAC...................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GATGGGA-AATCTATGGGAAATCTACC..............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................GTCTCCGTACAAGTCCTA-----C------------GT.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTT------GGCGGTAATTTTTGTGG----------ACGACATT......................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCCTCGACTGATGGGA-AATC.............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CT-AAATGCAAGCCTCGACTGATGGG...................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TATTT------GGCGGTAATTTTTGTGG----------ACGACA........................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTTTGTGG----------ACGACATTGAAAATTGT.............................................................................................................................................................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTT------GGCGGTAATTTTTGTGG----------ACGACAT.......................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGATGGGA-AATCTATGGGAAATCTACCCGCA..........................................................................................................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGTGG----------ACGACATTGAAAATTGGAG...........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAAGCCTCGACTGATGGGA-AATCTA...........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TTTGTGG----------ACGACATTGAAAATTGGAGG..........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TTTTTGTGG----------ACGACATTGAAA..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................CAAGCCTCGACTGATGGGA-AATCT............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TTGTGG----------ACGACATTGAAAATTGGAGG..........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................TGATGGGA-AATCTATGGGAAATCTA................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................GATGGGA-AATCTATGGGAAATCTACCCGC...........................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGACTGATGGGA-AATCTATGGGAAA....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTCGACTGATGGGA-AATCTAT..........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GACTGATGGGA-AATCTATGGG.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................TCATATGAAA-------TATTT------GGCGGT...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GAAAATTGGAGGAAGGTCTCCGTA..............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ACCCGCAGATAGACTCCTTCG............................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TTGAAAATTGGAGGATC.......................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCGCTGCTTC-AAATGCAAGCCTCGACTGATGACACAAATTATGGGAAATCTACCCGCAGATAGACTCCGTGCTCTCCGCCCATTTGCGA-------TATGT------GGCGTTGATTTTTGTGGCCCTGTCTATACGACATTAAAAATTCGAGGAAGGCCCCCGTATAAGTCCTA-----CGTTGCCTTATTTGTTTGTTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCGCTTTTCT-AAAT-------------------ACACATTATGGGAAATCTTCCCGCAGATAGACTGCGAGAT--------------------------------------------------------------------------------------------------------------------------------------------GAACTCGCGGCGGCTTGGAGCTCTCAGCCAGGACC----------CAAGCGACGGAGACGCGAT-----------------------------------CACTCCCGAA-TACATGCTGACAGGTCGGCA-----TTGAAGAACCAGCACTCCGGATCCCGGATCAG----GT-CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GAGCTGCTTC-AAATGCAAGCCTCGACTGATGACACAAATTATGGGAAATCTACCCGCAGATAGACTTCGTGCTCTCCGCCCATTTGCGT-------TATGT------GGCGTTTCTCAACGCCG-------------------------------------------------AAGAGCTGGCAACAGTCGTCGTCGGGATCGAGGCTGCAATGAACTCGCGGCCCCTTGTAGCGCTCAGCCAGGACC----------CAAGCGACGGAGAGGCGCT-----------------------------------AACTCCCAGGCCTTCTGCTGACAGGCGGGCCGCTCATTGCAGCACCAGCACTCCGGACCCCGGACCAGGCGGGT-CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................TCAGCCAGGACC----------CAAGCGACGGAGA.....................................................................................................................25201.80360114000000021
.............................................................................................................................................................................................................................................TCAGCCAGGACC----------CAAGCGACGGAGAGG...................................................................................................................27201.0521000000200019
................................................................................................................................................................................................................................................GCCAGGACC----------CAAGCGACGGAGAGGC..................................................................................................................25200.551102700000002
.............................................................................................................................................................................................................................................TCAGCCAGGACC----------CAAGCGACGGAGAGGC..................................................................................................................28200.5511000000000011
.................................................TCTACCCGCAGATAGACTTCGTGCTC..........................................................................................................................................................................................................................................................................................................................2620.50101000000000
..................................................................................................................................................................................................................................................CAGGACC----------CAAGCGACGGAGAGGC..................................................................................................................23200.30602000010003
..........................................................................................................................................................................................................................................CGCTCAGCCAGGACC----------CAAGCGACGG........................................................................................................................25200.25505000000000
.................................................................................................................................................................................................................................................CCAGGACC----------CAAGCGACGGAGAGGC..................................................................................................................24200.25500000000005
..............................................................................................................................................................................................................................................CAGCCAGGACC----------CAAGCGACGGAGAGG...................................................................................................................26200.20403100000000
................................................................................................................................................................................................................................................GCCAGGACC----------CAAGCGACGGAGAGGCGC................................................................................................................27200.15300300000000
................................................................................................................................................................................................................................................GCCAGGACC----------CAAGCGACGGAGAGG...................................................................................................................24200.15300300000000
..............................................................................................................................................................................................................................................CAGCCAGGACC----------CAAGCGACGGAGAGGC..................................................................................................................27200.15300300000000
.............................................................................................................................................................................................................................................TCAGCCAGGACC----------CAAGCGACGGAG......................................................................................................................24200.15302100000000
............................................................................................................................................................................................................................................CTCAGCCAGGACC----------CAAGCGACGGAG......................................................................................................................25200.15300000000003
.................................................................................................................TTCTCAACGCCG-------------------------------------------------AAGAGCTGGCAACA.........................................................................................................................................................................................................2670.14101000000000
..........................................................................................................................................................................................................................................CGCTCAGCCAGGACC----------CAAGCGACGGAGA.....................................................................................................................28200.10202000000000
............................................................................................................................................................................................................................................................................................................................................................................TCCGGACCCCGGACCAGGCGGGT-C24200.10200200000000
.............................................................................................................................................................................................................................................TCAGCCAGGACC----------CAAGCGAC..........................................................................................................................20200.10200200000000
....................................................................................................................................................................................................................................................GGACC----------CAAGCGACGGAGAGGCGCT-----------------------------------AAC.........................................................................27200.10201100000000
...........................................................................................................................................................................................................................................GCTCAGCCAGGACC----------CAAGCGACGGA.......................................................................................................................25200.10200000000002
.......................CGACTGATGACACAAATTATGGGAA.....................................................................................................................................................................................................................................................................................................................................................25200.10210100000000
..............................................................................................................................................................................................................................................CAGCCAGGACC----------CAAGCGACGGA.......................................................................................................................22200.05101000000000
...............................................................................................................................................................................................................................................AGCCAGGACC----------CAAGCGACGGAGAGG...................................................................................................................25200.05101000000000
..................................................................................................................................................................................................................................................CAGGACC----------CAAGCGACGGAGAG....................................................................................................................21200.05101000000000
.......................CGACTGATGACACAAATTATGG........................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................AGCACTCCGGACCCCGGACCAGGC......24200.05100100000000
........................................................................................................................................................................................................................................................................................................................................TGCTGACAGGCGGGCCGCTA.........................................20200.05101000000000
.................................................................................................................................................................................................................................................CCAGGACC----------CAAGCGACGGAGAGG...................................................................................................................23200.05101000000000
......................................................................................................................................................................................................................................................................GCGACGGAGAGGCGCT-----------------------------------AACTCCC.....................................................................23200.05101000000000
.....GCTTC-AAATGCAAGCCTCGACTGATGA....................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................GCACTCCGGACCCCGGACCAGGCGGG...26200.05101000000000
..........................................................................................................................................................................................................................................CGCTCAGCCAGGACC----------CAAGCGACGGA.......................................................................................................................26200.05101000000000
..............................................................................................................................................................................................................................................CAGCCAGGACC----------CAAGCGACGGAGAGGT..................................................................................................................27200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................AGCACTCCGGACCCCGGACCAGGCGGGT-C29200.05100000000001
............................................................................................................................................................................................................................................CTCAGCCAGGACC----------CAAGCGACGG........................................................................................................................23200.05101000000000
...................................................................................................................................................................................................................................................AGGACC----------CAAGCGACGGAGAGGCGCC-----------------------------------............................................................................25200.05100100000000
.............................................................................................................................................................................................................................................TCAGCCAGGACC----------CAAGCGACG.........................................................................................................................21200.05101000000000
..................................................................................................................................................................................................................................................CAGGACC----------CAAGCGACGGAGAGGCGCT-----------------------------------............................................................................26200.05100100000000
.............................................................................................................................................................................................................................................TCAGCCAGGACC----------CAAGCGACGGAGAT....................................................................................................................26200.05101000000000
..................................................................................................................................................................................................................................................CAGGACC----------CAAGCGACGGAGAGGCGC................................................................................................................25200.05100000010000
.....................................................................................................................................................................................................................................................GACC----------CAAGCGACGGAGAGGCGCT-----------------------------------............................................................................23200.05101000000000
...............................................................................................................................................................................................................................................AGCCAGGACC----------CAAGCGACGGAGAGGC..................................................................................................................26200.05100100000000
.......................................................................................................................................................................................................................................................CC----------CAAGCGACGGAGAGGCGCT-----------------------------------AACTCC......................................................................27200.05101000000000
...........................................................................................................................................................................................................................................GCTCAGCCAGGACC----------CAAGCGACGGAG......................................................................................................................26200.05100100000000
............................................................................................................................................................................................................................................CTCAGCCAGGACC----------CAAGCGACGGAGA.....................................................................................................................26200.05100010000000
...................................................................................................................................................................................................................................................AGGACC----------CAAGCGACGGAGAGG...................................................................................................................21200.05100100000000
...............................................................................................................................................................................................................................................AGCCAGGACC----------CAAGCGACGGAGAG....................................................................................................................24200.05101000000000
..........................................................................................................................................................................................................................................CGCTCAGCCAGGACC----------CAAGCGACG.........................................................................................................................24200.05101000000000
...................................................................................................................................................................................................................................................................CAAGCGACGGAGAGGCGCT-----------------------------------AACTCC......................................................................25200.05100100000000
.....................................................................................................................................................................................................................................................................................................................................................................CCAGCACTCCGGACCCCGGACCAGGCG.....27200.05100100000000
................................................................................................................................................................................................................................................GCCAGGACC----------CAAGCGACGGAGAG....................................................................................................................23200.05100100000000
......................................................................................................................................................................................................................................................ACC----------CAAGCGACGGAGAGGCGCT-----------------------------------AAC.........................................................................25200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................CACTCCGGACCCCGGACCAGGCGGG...25200.05101000000000
droEre2
GCGCTGCTTT-A-ATGCAAGCCTCTATGGATGACACAAATAATGGGAAATCTACCCCCAGATAGACTCCGTTCTCTCCGCCCCTTTGCGA-------TACGT------GGTGTTGATTTTTGTGGA---------AAGACAATGAAAATTTTACTAAGGCATCCGAACAAGTCCAA-----CGTTGCCTTATTTGTTTGTTTTTCATCCG----------------------GCGGATCACTTTGAGATTGTGTCA----------------------------------------------------------------------------------------GTTCATTGC---GACAACGCGATGAACTTCGTCGGAG-CGAGTAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................GACAATGAAAATTTTACTAAGGCA....................................................................................................................................................................................................................................2420.5011000000

Generated: 05/18/2015 at 01:26 AM