dps_1755

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGTTCCTTTGGAGAGAAAGATCTCGGTTCCCCCAGAGTGGTTTGCACCTCTTCTTTGTTCTTGAAGCGTTGCACGATACGTGGTAGGCATCCAGTAACTCCTTGAATAGGGTCTCTACGGACTTCTTTATATCCTCCGCAGATTTCACTGAGTCGCGGACTCGCGAGCTTCGAACTAACTGATTTTTTAAACTTTACCCAGTTTTGTGTTCCTCCCCCACATTTGATACGTCTAAGTTAGTGGATAATATA *******************************************************************************************************************************************..(((...((((((((....))))).))).)))......................*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902010 ovaries	GSM444067 head	V112 male body
.....................................................................................................................................................GAGTTGCGAACTCGCGAG....................................................................................	18	2	3	2.00	6	6	0	0	0
.........................................................................................................................................................................TCGAACTAACTGATTTTTTAAACTTTA.......................................................	27	0	1	2.00	2	0	2	0	0
.............................................................................................................................................ATTTCACTGAGTCGCGGACT..........................................................................................	20	0	1	2.00	2	2	0	0	0
.....................................................................TGCACGTTACGTGGTAGGCGTCCAG.............................................................................................................................................................	25	2	1	1.00	1	1	0	0	0
...............................................................................................................................................TTCACTGAGTCGCGGACTCGCGAGC...................................................................................	25	0	1	1.00	1	1	0	0	0
................................................................................................................................................TCACTGAGTCGCGGACTCGCGAGCT..................................................................................	25	0	1	1.00	1	1	0	0	0
......................................................................................GCGTCCAGTAATTCCTTGAATAGGGTT..........................................................................................................................................	27	3	1	1.00	1	1	0	0	0
......................TCGGTTCCCCCAGAGTGGTTTGCACC...........................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
.............................................................................................................................................ATTTCACTGAGTCGCGGACTCGCGAGC...................................................................................	27	0	1	1.00	1	1	0	0	0
..............................................................................................................................................TTTCACTGAGTCGCGGACTCGCGAGC...................................................................................	26	0	1	1.00	1	1	0	0	0
...................................................................CTTGCACGATACGTGGTAGGCATC................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0
................................................................................................................................................TCACTGAGTCCCGAACTCGTG......................................................................................	21	3	2	0.50	1	0	0	1	0
.........GGAGAGAAAGATCTCGGTTCC.............................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0
................................................TCTTCTTTGTTCTTGAGGGGTTGCACG................................................................................................................................................................................	27	2	3	0.33	1	1	0	0	0
..........................................................................GAAACGTGGTCGGAATCCAG.............................................................................................................................................................	20	3	4	0.25	1	0	0	0	1
................................................TCTTCTTTGTTCTTGAGGGGTTGCAC.................................................................................................................................................................................	26	2	4	0.25	1	1	0	0	0
.....................................................................TGTAGGATAGGTGGTAGGC...................................................................................................................................................................	19	3	20	0.25	5	2	0	0	3
........................GGTTCCCTCAGAATGGTTGG...............................................................................................................................................................................................................	20	3	9	0.22	2	2	0	0	0
................................................................AGCGTTGCTCGGGACGTGGT.......................................................................................................................................................................	20	3	5	0.20	1	0	0	1	0
....................................................................................................................................................TGAGTTGCGAACTCGCGAGA...................................................................................	20	3	7	0.14	1	1	0	0	0
...............................................................................................................................TATATCCTCCGCGGATTTCACTGAGT..................................................................................................	26	1	17	0.06	1	1	0	0	0
................................................................AGCGTTGCTCGGTACGTT.........................................................................................................................................................................	18	3	20	0.05	1	0	0	1	0
..................................................................................................................................ATCCTCCGCTGATTTCACTGA....................................................................................................	21	1	20	0.05	1	1	0	0	0

ACAAGGAAACCTCTCTTTCTAGAGCCAAGGGGGTCTCACCAAACGTGGAGAAGAAACAAGAACTTCGCAACGTGCTATGCACCATCCGTAGGTCATTGAGGAACTTATCCCAGAGATGCCTGAAGAAATATAGGAGGCGTCTAAAGTGACTCAGCGCCTGAGCGCTCGAAGCTTGATTGACTAAAAAATTTGAAATGGGTCAAAACACAAGGAGGGGGTGTAAACTATGCAGATTCAATCACCTATTATAT *****************************************************..(((...((((((((....))))).))).)))......................*******************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902010 ovaries	V112 male body	GSM343916 embryo	SRR902011 testis	M059 embryo	M062 head
...................................................................................................................................................................................................TGGGTCAAAACACAAGGAGGGGGT................................	24	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................GGGTCAAAACACAAGGAGGGGGTGT..............................	25	0	1	1.00	1	1	0	0	0	0	0	0
................................................................................................TGAGGAACTTATCCCAGAGATGCCT..................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................CCCAGAGATGCCTGAAGAAATATAGGAG...................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................GGAGAAATATAGGAGGCGACTAAAGT........................................................................................................	26	2	2	0.50	1	0	1	0	0	0	0	0
.........................................................................GCAATGCACCATCCGCAGGTCAT...........................................................................................................................................................	23	2	2	0.50	1	1	0	0	0	0	0	0
.................................................................................................................................ATAGGAGGCGTCTAAAGTGACTC...................................................................................................	23	0	5	0.40	2	0	2	0	0	0	0	0
.................................................GAAGAAACAAGAACTCCCCAACGTGC................................................................................................................................................................................	26	2	3	0.33	1	1	0	0	0	0	0	0
...........................................................................................GTGATGGAGGGACTTATCC.............................................................................................................................................	19	3	7	0.29	2	1	0	1	0	0	0	0
.................................................................................................AAGGAACTTATCCCAAAGATCCCT..................................................................................................................................	24	3	5	0.20	1	1	0	0	0	0	0	0
.................................................................................................................................ATAGGAGGCGTCTAAAGTGACT....................................................................................................	22	0	5	0.20	1	1	0	0	0	0	0	0
..................................................................................................................................TAGGAGGCGTCTAAAGTGACTC...................................................................................................	22	0	5	0.20	1	1	0	0	0	0	0	0
................................................................................................................................TATAGGAAGCGTCTAAAGTGACT....................................................................................................	23	1	6	0.17	1	1	0	0	0	0	0	0
..................................................................................................................GATGCCAGAAGAGATATAGGAGG..................................................................................................................	23	2	7	0.14	1	1	0	0	0	0	0	0
...............................................................................................................AGAGATGCCAGAAGAGATATAGGAG...................................................................................................................	25	2	8	0.13	1	1	0	0	0	0	0	0
......................................................................................................................................................................................AAAAAATTTGAAACGGGTCT.................................................	20	2	8	0.13	1	1	0	0	0	0	0	0
..............................................................................................................................AATATAGGAGGCGCCTAAAGTGACT....................................................................................................	25	1	18	0.11	2	0	0	1	1	0	0	0
..................................................................................................................................................................................................................................ATGCAGATTCAATCACCTATT....	21	0	19	0.11	2	0	0	0	0	2	0	0
..............................................................................................................CAGAGATGCCAGAAGAGATATA.......................................................................................................................	22	2	10	0.10	1	0	0	0	0	0	1	0
...............................................................................................................AGAGATGCCAGAAGAGATATA.......................................................................................................................	21	2	10	0.10	1	1	0	0	0	0	0	0
......................................................................................................................................CGGCGTCTGAAGTGACTC...................................................................................................	18	2	11	0.09	1	0	0	0	1	0	0	0
.............................................................................................................................AAATATAGGAGGCGCCTAAAGTGACTC...................................................................................................	27	1	18	0.06	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCAGATTCAATCACCTATT....	20	0	19	0.05	1	1	0	0	0	0	0	0
............................................................................................................................................TTAAAGTGACTCAGAGCCC............................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
dp5	Unknown_group_115:11562-11812 -	dps_1755	TGTTCCTTTGGAGAGAAAGATCTCGGTTCCCCCAGAGTGGTTTGCACCTCTTCTTTGTTCTTGAAGCGTTGCACGATACGTGGTAGGCATCCAGTAACTCCTTGAATAGGGTCTCTACGGACTTCTTTATATCCTCCGCAGATTTCACTGAGTCGCGG--ACTCGCGAGCTTCGAACTAACTGATTTTTTAAACTTTACCCAGTTTTGTGTTCC-------------------------------------------TCCCCCACATTTGATACGTCTAAGTTAGTGGATAATATA
droPer2	scaffold_133:8516-8766 +		TGTTCCTTTGGAGAGAAAGATCTCGGTTCCCCCAGAGTGGTTTGCACCTCTTCTTTGTTCTTGAAGGGTTGCACGATACGTGGTAGGCATCCAGTAACTCCTTGAATAGGGTCTCTACGGACTTCTTTATATCCTCCGCAGATTTCACTGAGTCGCGG--ACTCGCGAGCTTCGAACTAACTGATTTTTTAAACTTTACCCAGTTTTGTGTTCC-------------------------------------------TCCCCCACATTTGATACGTCTAAGTTAGTGGATAATATA
droWil2	scf2_1100000004965:359303-359306 +		TGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000391342:1188-1279 +		TGGTTTTAAAGGGCGCAAGTGTTTGCGACCACCATGGTGGTTTCTTTGACTTGCTATTGCCCGATCTGC-----------TTTTGGGCATCCAGGGCTTCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000299506:22207-22460 +		TGTTGCGTCGGAGTGAAAGGTCCTTATTCCACCAGGGTGGCCTGGTCCTCTTTCTCGAGTCCGATATAGTGCAAGATGCGTGGTACGCATCCAGCAGTTCTTTGGAGACGGTCTCTAGGGACTTTTCTATGTCTTCCGCGGATTCTACTATGCCCGGAGAGATCGCGAGCCGTGTCGCGATAGTCTCCTTGAAATTTCCCCAGTTA-GTATTTCGGGGGTTCCTGAAGACTGATTGTTTTGGAGAGTGTTCGAAT-----------------------------------------
droFic1	scf7180000452125:9570-9697 +		CATT------------------------------------------------------------------------------ATACACATCCAGTAGTTTTTTGGAAAGGGTATCTTAGGATGTTTCTATGTCTTGCACAGATCTTACTACACCTGGCATAGCTGCGAGCTTCGAACAGATTTTCATTTAAAATTTTTCCCAGTTT------------------------------------------------------------------------------------------
droEle1	scf7180000490212:13697-13879 +		A-----------------GGTGCCGGTTCCACAATGGTGCTTTAGTCCTCTTTCTTATTCTCGAAATTCGGCAGGAAGCGTGATACGCATCTAGTAATTCCTTGGATAG---------GGACTTTTCTATGTGTTCCGCGGGTGTTACAGAGTCCGGGTGCGTCGGGAGCCCTAATTTAACT----TAACTAACTTATTCCAGTTT-GTATTCC----------------------------------------------------------------------------------
droBia1	scf7180000302042:31163-31440 -		TATTTCTTTTGAGTGTCAGTTCCCGATTCCACCATGGTGGCTTGGTATTATTTCTTGTTCTTCATATTGGGCATGATGCGTGAAACGCACCCCATAATTCCTTGGACAGGGTCTCTATGGACGTTTCTATGTCTTTTACCGATTTTACTACGCCTGGGCTAGTCGCGAGCTCCGAGGTAACTGTCATGGTAAACTTTTTCCAGTTC-GCGTTCCGGGGGTTTTTATAGACAATTACCTTTGGAATACTTTTAAATTCGTCCCTGAACTGAATATACCTA-----------------
droTak1	scf7180000413081:6327-6539 +		TATGTCTTTGGAGTGTAAGTTCCCGATTCCACCATGGTGGCCTGGTCTTCTTCCTTGTTCTTGAAGTCGGGCATGATGCGTGATACGCATCCAGTAATTCCTTGGACAAGGTCTCTAGGGACCTTTCTATGTCTCTCTCGGATTTTACTATGCCTGGGCTAGTCGCGAGTTTCGGGGTCACTGTCCTTGTAAACTTTTCCCAGTTC-GTGTTCC----------------------------------------------------------------------------------
droYak3	v2_chrUn_1232:974-1200 -		TATTGCGTAGAAGCGAAAGATTACCGTTCCACCAGGGTGGCCTGGTCCTCTTCCTGGCTCTAGATGTCGGGCATGCTGCGCGCTGCGCATCTAATAATTCCCTGGAGAGGGTCTCTAGAGACTTTTCTATGTCTTCAGCTGATTTTACTAGGCCCGGGCCAGTCGCGAGTTGTGTCGAGATTGCCTC--------------------------T-------------------------------------------TCCCCCACGTTAGCTATGCGTATGTTAGTTGGTAGTAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

TGTTCCTTTGGAGAGAAAGATCTCGGTTCCCCCAGAGTGGTTTGCACCTCTTCTTTGTTCTTGAAGCGTTGCACGATACGTGGTAGGCATCCAGTAACTCCTTGAATAGGGTCTCTACGGACTTCTTTATATCCTCCGCAGATTTCACTGAGTCGCGG--ACTCGCGAGCTTCGAACTAACTGATTTTTTAAACTTTACCCAGTTTTGTGTTCC-------------------------------------------TCCCCCACATTTGATACGTCTAAGTTAGTGGATAATATA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................TCGAACTAACTGATTTTTTAAACTTTA..................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.............................................................................................................................................ATTTCACTGAGTCGCGG--ACT.....................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................TTCACTGAGTCGCGG--ACTCGCGAGC..............................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCACTGAGTCGCGG--ACTCGCGAGCT.............................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TCGGTTCCCCCAGAGTGGTTTGCACC........................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ATTTCACTGAGTCGCGG--ACTCGCGAGC..............................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TTTCACTGAGTCGCGG--ACTCGCGAGC..............................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GGAGAGAAAGATCTCGGTTCC..........................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGTTCCTTTGGAGAGAAAGATCTCGGTTCCCCCAGAGTGGTTTGCACCTCTTCTTTGTTCTTGAAGGGTTGCACGATACGTGGTAGGCATCCAGTAACTCCTTGAATAGGGTCTCTACGGACTTCTTTATATCCTCCGCAGATTTCACTGAGTCGCGG--ACTCGCGAGCTTCGAACTAACTGATTTTTTAAACTTTACCCAGTTTTGTGTTCC-------------------------------------------TCCCCCACATTTGATACGTCTAAGTTAGTGGATAATATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................TACGTGGTAGGCATCCAGTAACTC....................................................................................................................................................................................................	24	2	2.00	4	1	3	0	0	0	0
..............................................................................................................................................TTTCACTGAGTCGCGG--ACTCGCGAGC..............................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................................................................ACGTGGTAGGCATCCAGTAACTCCTTG................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
............................................................................TACGTGGTAGGCATCCAGTAACTCCTTG................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
............................................................................TACGTGGTAGGCATCCAGTAACTCC...................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
............................................................................TACGTGGTAGGCATCCAGTAACT.....................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
.......................................................................CACGATACGTGGTAGGCATCCAGTAAC......................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
............................................................................TACGTGGTAGGCATCCAGTAACTCCT..................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
..........................................................................GATACGTGGTAGGCATCCAGTAACTCC...................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
...............................................................................GTGGTAGGCATCCAGTAACTC....................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
............................................................................TACGTGGTAGGCATCCAGT.........................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0

droWil2

TGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droBip1

TGGTTTTAAAGGGCGCAAGTGTTTGCGACCACCATGGTGGTTTCTTTGACTTGCTATTGCCCGATCTGC-----------TTTTGGGCATCCAGGGCTTCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTTGCGTCGGAGTGAAAGGTCCTTATTCCACCAGGGTGGCCTGGTCCTCTTTCTCGAGTCCGATATAGTGCAAGATGCGTGGTACGCATCCAGCAGTTCTTTGGAGACGGTCTCTAGGGACTTTTCTATGTCTTCCGCGGATTCTACTATGCCCGGAGAGATCGCGAGCCGTGTCGCGATAGTCTCCTTGAAATTTCCCCAGTTA-GTATTTCGGGGGTTCCTGAAGACTGATTGTTTTGGAGAGTGTTCGAAT-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATT------------------------------------------------------------------------------ATACACATCCAGTAGTTTTTTGGAAAGGGTATCTTAGGATGTTTCTATGTCTTGCACAGATCTTACTACACCTGGCATAGCTGCGAGCTTCGAACAGATTTTCATTTAAAATTTTTCCCAGTTT------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A-----------------GGTGCCGGTTCCACAATGGTGCTTTAGTCCTCTTTCTTATTCTCGAAATTCGGCAGGAAGCGTGATACGCATCTAGTAATTCCTTGGATAG---------GGACTTTTCTATGTGTTCCGCGGGTGTTACAGAGTCCGGGTGCGTCGGGAGCCCTAATTTAACT----TAACTAACTTATTCCAGTTT-GTATTCC----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATTTCTTTTGAGTGTCAGTTCCCGATTCCACCATGGTGGCTTGGTATTATTTCTTGTTCTTCATATTGGGCATGATGCGTGAAACGCACCCCATAATTCCTTGGACAGGGTCTCTATGGACGTTTCTATGTCTTTTACCGATTTTACTACGCCTGGGCTAGTCGCGAGCTCCGAGGTAACTGTCATGGTAAACTTTTTCCAGTTC-GCGTTCCGGGGGTTTTTATAGACAATTACCTTTGGAATACTTTTAAATTCGTCCCTGAACTGAATATACCTA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATGTCTTTGGAGTGTAAGTTCCCGATTCCACCATGGTGGCCTGGTCTTCTTCCTTGTTCTTGAAGTCGGGCATGATGCGTGATACGCATCCAGTAATTCCTTGGACAAGGTCTCTAGGGACCTTTCTATGTCTCTCTCGGATTTTACTATGCCTGGGCTAGTCGCGAGTTTCGGGGTCACTGTCCTTGTAAACTTTTCCCAGTTC-GTGTTCC----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

TATTGCGTAGAAGCGAAAGATTACCGTTCCACCAGGGTGGCCTGGTCCTCTTCCTGGCTCTAGATGTCGGGCATGCTGCGCGCTGCGCATCTAATAATTCCCTGGAGAGGGTCTCTAGAGACTTTTCTATGTCTTCAGCTGATTTTACTAGGCCCGGGCCAGTCGCGAGTTGTGTCGAGATTGCCTC--------------------------T-------------------------------------------TCCCCCACGTTAGCTATGCGTATGTTAGTTGGTAGTAAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................TATGTCTTCAGCTGATTTTACTAGGC...............................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................TATGTCTTCAGCTGATTTTACTAGGCC..............................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................ATGTCTTCAGCTGATTTTACTAGGCC..............................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................TCTAGATGTCGGGCATGCTGCGCGC.....................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCCCCCACGTTAGCTATGCGTATGT..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................TAGATGTCGGGCATGCTGCGCG......................................................................................................................................................................................................................	22	6	1.00	6	0	1	0	0	0	0	0	0	0	0	5
.......................................................................................................................GACTTTTCTATGTCTTCAGCTGATTT.......................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCGAGATTGCCTC--------------------------T-------------------------------------------TCCCCCACGTT............................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......TAGAAGCGAAAGATTACCGTTCCACC.......................................................................................................................................................................................................................................................................	26	3	1.00	3	0	1	2	0	0	0	0	0	0	0	0
.........................................................................................TCTAATAATTCCCTGGAGAGGGTCTC.....................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TCTAATAATTCCCTGGAGAGGGTC.......................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.........GAAGCGAAAGATTACCGTTCCACCA......................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TGCGCATCTAATAATTCCCTGGAGAGG..........................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TCTAATAATTCCCTGGAGAGGGT........................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................TTTTACTAGGCCCGGGCCAGTCGCGAG...............................................................................................................................	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0	0
...................................................TCCTGGCTCTAGATGTCGGGCATGCTG..........................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................TACCGTTCCACCAGGGTGGC...............................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
TATTGCGTAGAAGCGAAAGATTACC...............................................................................................................................................................................................................................................................................	25	9	0.22	2	0	1	1	0	0	0	0	0	0	0	0
......................................................TGGCTCTAGATGTCGGGCATGCTGCG........................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
TATTGCGTAGAAGCGAAAGATTACCGT.............................................................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................GGCTCTAGATGTCGGGCATGCTGCA........................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...TGCGTAGAAGCGAAAGATTACCGTTC...........................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTACTAGGCCCGGGCCAGTCGCGAG...............................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
............................................................TAGATGTCGGGCATGCTGCGC.......................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
.............................................TCCTCTTCCTGGCTCTAGATGTCG...................................................................................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTTTACTAGGCCCGGGCCAGTCGCGA................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TGGTCCTCTTCCTGGCTCTAGATGTC....................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..........................TTCCACCAGGGTGGCCTGGTCCTCT.....................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...........................TCCACCAGGGTGGCCTGGTCCTCTTC...................................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0

dps_1755

Unknown_group_115:11612-11762 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-8.6	-8.1	-8.0