ID:

dps_1750

 Coordinate:

Unknown_group_11:10196-10346 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.5

Flybase annnotation

exon [dpse_GLEANR_13607:2]; CDS [Dpse\GA24042-cds]; intron [Dpse\GA24042-in]; Antisense to intron [Dpse\GA10873-in]

No Repeatable elements found

mature
  1. dps_1750  Unknown_group_11:10246-10270 -
  2. XL_group1a:1595195-1595219 +
star
  1. dps_1750  Unknown_group_11:10279-10299 -
  2. Unknown_group_391:15328-15348 +
  3. XL_group1a:1595166-1595186 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCTCTTGCTACGGTATCCATGTCGCTATGTCGCTTTATTATTGCTCGGAATGCAATTCGGATGTAACTGCCGCTCAGCTTCGTTGCTTTGAGGCTGTCCGCTGTTCTTCTTTGTGCCGCCGAGCGTTTCATTTGACGTGCATCGATTTGCGCGCAGACGCAGTTAAACTTTTAACAAATCTGCCTAATTTGTTATGGCAGTGTGATAACTGTGTGGTTGCGTATGACTCGCATTCGAAAATAGATGAGCT
*************************************************************************************************...((...................(((((((......)))))...)).....))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 GSM444067
head
 M062
head
 M022
male body
....................................TATTATTGCTCGGAATGCAATTCGGATG........................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
......TGCTACGGTATCCATGTCGCTATG............................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................TGGCAGTGTGTTAGCTGT...................................... 18 2 10 0.70 7 0 0 6 0 0 1 0
..............................................................................................................................TTTCATTTGACGTGCATCGATTTGC.................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................TTCTTTGTGCCGCCGAGCGTTTCATT...................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TTGTGCCGCCGAGCGTTACATCTG.................................................................................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................TGTGCCGCCGAGCGTTACATCTGACG................................................................................................................. 26 2 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................................GCCGCCGAGCGTTACATCTGACG................................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................TCCGCTGTTCTTCTTTGTGCC..................................................................................................................................... 21 0 3 0.33 1 0 0 0 1 0 0 0
..................................................................................................................TGCCGCCGAGCGTTACATCTGACG................................................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................GGCAGTGTGATAACTGTGTGGTT................................ 23 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TGTTGTGGCAGTGTGATAACTGT...................................... 23 1 4 0.25 1 1 0 0 0 0 0 0
....................................................................................TGCTTTGAGGCTGTCCGCTGTTC................................................................................................................................................ 23 0 5 0.20 1 1 0 0 0 0 0 0
...............................................................................TTCGTTGCTTTGAGGCTGTCCGCTG................................................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0
..........................................................................................GAGGCTGTCCGCTGTTCTTCTTTG......................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0
....................................................................................................................................................................TAAACTTTTAACAAATCTGCCTAATT............................................................. 26 0 5 0.20 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TAATTTGTTATGGCAGTGTG.............................................. 20 0 5 0.20 1 0 1 0 0 0 0 0
.........................................................................................TGAGGCTGTCCGCTGTTCTTCTTTG......................................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0
.......................................................................................TTTGAGGCTGTCCGCTGTTCTTTTT........................................................................................................................................... 25 1 5 0.20 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................TGGCAGCGTGATTACTGTGTTG.................................. 22 3 5 0.20 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................GTCTGATAACTCTCTGGTTG............................... 20 3 10 0.20 2 2 0 0 0 0 0 0
....................................................................................TGCTTTGAGGCTGTCCGCTG................................................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0 0
...............................................................................TTCGTTGCTTTGAGGCTGTCCGCT.................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0
.................................................................................................................................................................AGTTAAACTTTTAACAAATCT..................................................................... 21 0 5 0.20 1 0 1 0 0 0 0 0
................................................................................................................................................................CAGTTAAACTCTTAACAAATCTGCC.................................................................. 25 1 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................................GACGCAGTTAAACTTTTAACAAATC...................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0
.......................................................................................................................................................................ACTCTTAACAAATCTGCCTC................................................................ 20 2 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................CGAGCGTTTCAGTGGAGGTG............................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0
...............................................................GTAACTGACGCTGAGGTTC......................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1
...................................................................................................................................................................................................TGGCAGTGTGGTAGCTGGGTG................................... 21 3 17 0.06 1 1 0 0 0 0 0 0
...............................................................GTAACTGACGCTGAGCCTC......................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GTGTTTGGTTGCGGATGACT...................... 20 3 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................TGGCAGTGTGGTAACTGGTT.................................... 20 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

AAGAGAACGATGCCATAGGTACAGCGATACAGCGAAATAATAACGAGCCTTACGTTAAGCCTACATTGACGGCGAGTCGAAGCAACGAAACTCCGACAGGCGACAAGAAGAAACACGGCGGCTCGCAAAGTAAACTGCACGTAGCTAAACGCGCGTCTGCGTCAATTTGAAAATTGTTTAGACGGATTAAACAATACCGTCACACTATTGACACACCAACGCATACTGAGCGTAAGCTTTTATCTACTCGA
****************************************************************************************************...((...................(((((((......)))))...)).....))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 M059
embryo
 SRR902012
CNS imaginal disc
 SRR902011
testis
 M022
male body
....................................................................................................................GGCGGCTCGCAAAGTAAACTGCACGT............................................................................................................. 26 0 2 2.50 5 5 0 0 0 0 0
.......................................................................................................CAAGAAGAAACACGGCGGCTCGCAAAG......................................................................................................................... 27 0 2 1.50 3 3 0 0 0 0 0
.........................................................................................................AGAAAAAACACGGCGGCTCGCAAT.......................................................................................................................... 24 2 2 1.50 3 3 0 0 0 0 0
..............................................................................................................AAACACGGCGGCTCGCAAAGTAAACT................................................................................................................... 26 0 2 1.50 3 3 0 0 0 0 0
............................................................................................................AAAAACACGGCGGCTCGCAATGTAGACT................................................................................................................... 28 3 2 1.50 3 3 0 0 0 0 0
......................................................................................................................CGGCTCGCAAAGTAAACTGCACGT............................................................................................................. 24 0 2 1.50 3 1 2 0 0 0 0
..................................................................................................GGCGACAAGAAGAAACACGGC.................................................................................................................................... 21 0 3 1.33 4 4 0 0 0 0 0
..................................................................................................................ACGGCGGCTCGCAAAGTAAACTGCACGT............................................................................................................. 28 0 2 1.00 2 1 1 0 0 0 0
..................................................................................................GGCGACAAGAAGAAACACGGCGGCTC............................................................................................................................... 26 0 3 1.00 3 3 0 0 0 0 0
.........................................................................................................................................................CGTCTGCGTCAATTTGAAAATTGT.......................................................................... 24 0 4 1.00 4 0 3 1 0 0 0
........................................................................................................................................................................................................CACACTATTGACACACCAACGCATAC......................... 26 0 1 1.00 1 0 1 0 0 0 0
............CCATAGGTACAGCGATACAGCGAAA...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
............................ACAGCGAAATAATAACGAGCCTT........................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................CGGCGGCTCGCAAAGTAAACTGCACGT............................................................................................................. 27 0 2 1.00 2 2 0 0 0 0 0
..................................................................................................................ACGGCGGCTCGCAATGTAGACTGCAC............................................................................................................... 26 2 3 1.00 3 3 0 0 0 0 0
....................................................................................................AGACAAGAAAAAACACGGCGGCTCGC............................................................................................................................. 26 2 3 0.67 2 2 0 0 0 0 0
.................................................................................................................CACGGCGGCTCGCAAAGTAAACTGCACGT............................................................................................................. 29 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................GAAACACGGCGGCTCGCAAAGTAAACT................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................AAGAAGAAACACGGCGGCTCGCAAAGT........................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................AAGAAAAAACACGGCGGCTCGCAAT.......................................................................................................................... 25 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................................GCTCGCAAAGTAAACTGCACG.............................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0
.....................................................................CGGCGAGTCGAAGCAACGAAACT............................................................................................................................................................... 23 0 4 0.50 2 1 1 0 0 0 0
..........................................................................................CTCCGACAGGCGACAAGAAGAAACACG...................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................GCGGCTCGCAAAGTAAACTGCAC............................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0
......................................................................................................................CGGCTCGCAAAGTAAACTGCACGTA............................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................................GCGTCTGCGTCAATCTGAAAATTGT.......................................................................... 25 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................................ACGGCGGCTCGCAAAGTAAACTGCAC............................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................AAGAAGAAACACGGCGGCTCGCAAA.......................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................ACAAGAAAAAACACGGCGGCTCGCAAT.......................................................................................................................... 27 2 2 0.50 1 0 1 0 0 0 0
..........................................................................................................GAAGAAACACGGCGGCTCGCAAAGT........................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................GGCTCGCAAAGTAAACTGCACG.............................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0
.............................................................................................................GAAACACGGCGGCTCGCAAAGT........................................................................................................................ 22 0 2 0.50 1 0 1 0 0 0 0
......................................................................GGCGAGTCGAAGCAACGAAACT............................................................................................................................................................... 22 0 4 0.50 2 2 0 0 0 0 0
................................................................................................CAGGCGACAAGAAGAAACACGGCGGCT................................................................................................................................ 27 0 3 0.33 1 0 1 0 0 0 0
..................................................................................................GGCGACAAGAAGAAACACGGCGGCT................................................................................................................................ 25 0 3 0.33 1 0 1 0 0 0 0
..................................................................................................GGCGACAAGAAAAAACACGGCGGC................................................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
.....................................................................................................................................................................................................CGTCACACTATTGACACATCAACGC............................. 25 1 3 0.33 1 0 1 0 0 0 0
................................................................ATTGACGGCGAGTCGAAGCAACGAAAC................................................................................................................................................................ 27 0 3 0.33 1 0 1 0 0 0 0
..................................................................................................................ACGGCGACTCGCAATGTAGACTGCAC............................................................................................................... 26 3 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................................................ACGGATTAAACAATACCGTCACACT............................................. 25 0 4 0.25 1 0 1 0 0 0 0
.....................................................................CGGCGAGTCGAAGCAACGAAACTC.............................................................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0 0
...................................................................GACGGCGAGTCGAAGCAACGAAACT............................................................................................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0
..................................................................TGACGGCGAGTCGAAGCAACGAAACTC.............................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................TGTTTAGACGGAGTAAACAACACCGT................................................... 26 2 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................................................CGTCTGCGTCAATTTGAAAAT............................................................................. 21 0 4 0.25 1 0 1 0 0 0 0
..................................................................TGACGGCGAGTCGAAGCAACGAAACT............................................................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0
..............................................................................................................................................................................TGTTTAGACGGATTAAACAATACCG.................................................... 25 0 4 0.25 1 0 1 0 0 0 0
..................................................................TGACGGCGAGTCGAAGCAACGATACT............................................................................................................................................................... 26 1 4 0.25 1 0 0 1 0 0 0
...................................................................GACGGCGAGTCGAAGCAACGAAAC................................................................................................................................................................ 24 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................TGTTTAGACGGATTAAACAATACCGT................................................... 26 0 4 0.25 1 0 1 0 0 0 0
......................................................................................................................................................................TTGAAAATTGTTTAGACGGATTAAAC........................................................... 26 0 5 0.20 1 0 1 0 0 0 0
.................................................................................................................................................................TCAATTTGAAAATTGTTTAGACGGAT................................................................ 26 0 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................................................................AATTGTTTAGACGGATTAAACAAT........................................................ 24 0 5 0.20 1 0 1 0 0 0 0
...........................................................................................TCCGACAGGCGACAAGAAGAA........................................................................................................................................... 21 0 5 0.20 1 0 1 0 0 0 0
............................................................................................................................................................................ATTGTTTATACGGATTAAACAAT........................................................ 23 1 5 0.20 1 0 1 0 0 0 0
.......................................................................................................................................................................................GGATTAAACAATACCGTCACACTAT........................................... 25 0 5 0.20 1 0 1 0 0 0 0
...............................................................................AAGCAACGAAACTCCGACAGGCGAC................................................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0
......................................................................................................................................................................................CGGATTAAACAATACCGTCACACTAT........................................... 26 0 5 0.20 1 0 1 0 0 0 0
......................................................................................................................................................................................CGAAGTAAACAACACCGTCACACT............................................. 24 3 5 0.20 1 0 1 0 0 0 0
............................................................................................................................................................................ATTGTTCAGAAGGATTAAA............................................................ 19 2 5 0.20 1 0 1 0 0 0 0
................................................................................AGCAACGAAACTCCGACAGGCGACAA................................................................................................................................................. 26 0 5 0.20 1 0 1 0 0 0 0
...............................................................................................................................................................................GTTTAGACGGAGTAAACAACACCGC................................................... 25 3 5 0.20 1 0 1 0 0 0 0
...................................................................................AACGAAACTCCGACAGGCGACAA................................................................................................................................................. 23 0 5 0.20 1 0 1 0 0 0 0
..............................................................................................................................................................................TGTTTAGACGGATTAAACAAT........................................................ 21 0 5 0.20 1 0 1 0 0 0 0
....................................................................................................CGCCAACAAGTAACACGGCGGC................................................................................................................................. 22 3 5 0.20 1 0 0 0 1 0 0
.............................................................................................................................................................................TTGTTCAGAAGGATTAAA............................................................ 18 2 13 0.08 1 0 0 0 0 0 1
..........................................................................................................................................ACCTAGCGCAACGCGCGTC.............................................................................................. 19 3 18 0.06 1 0 1 0 0 0 0
AAGAGAACGATGCCAT........................................................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 1 0
AAGAGAACGATGTCAT........................................................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_11:10146-10396 - dps_1750 TTCTCTTGCTACGGTA-----TCCATGTCGC-TATGTCGCTTTATTATTGCTCGGAATGCAATTCGGATGTAACTGCCGCTCAGCTTCGTTGCTTTGAGGCTGTCCGCTGTTCTTCTTTGTGCCGCCGAGCGTTTCATTTGACGTGCATCGATTTGCGCGCAGACGCAGTTAAACTTTTAACAAATCTGCCTAATTTGTTATGGCAGTGTGATAACTGTGTGGTTGCGTATGACTCGCATTCGAAAATAGATGAGCT
droPer2 scaffold_111:33695-33945 + TTCTCTTGCTACGGTA-----TCCATGTCAC-TATGTCGCTTTATTATTGCTCGGAATGCTATTCGGACGTAACTGCCGCTCAGCTTCGTTGCTTTGAGGCTGTCCGCTGTTCTTCTTTGTGGCGCCAAGCGTTTCATTTGACGTGCATCGATTTGCGCGCAGACGCAGTTAAACTTTTAACAAATCTGCCTAATTTGTTATGGCAGTGTGATAACTGTGTGGTTGCGAATGACTCGCATTCGAAAATAGATGAGCT
droWil2 scf2_1100000004943:301069-301089 + TAGTTTTTGTGAAGTA-----TCTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12736:400111-400300 - C----------------------------GC-TAAGCCGTTTCGCTTTTGTGTTGAGTGCAGTACTAAGGTATTAACAGCTCAGCTGAGAAACTTTGATGCTGTCCGGTGCTCTTCAATTTGCCGCATTGAGTTATC-----ATTGCATT---------------------------------GAGTTATCAAATCTACTATGGCAGTGTGACTACTGTGTCGGGCTTACTGATACTCAAACGAAAATTGATGAGCT
droAna3 scaffold_13260:269560-269814 - TTTCCTTGCGTTCGGACGTT-TATTTTCTGC-TATGTCGCCGCTCGTTTGTTCGGAGTGCAGTGGGGAAGTTACTGCTACGCAGCTTCGTGGGTGTGAGGCCGTTCGGTGCTCATCGATCTGCCGCCGTGCATATCATACGGATTGTATTGATTTGCCATCCGAGGCTATAAAACTTCTAATAAACATTCCAAACTTATTGTGGCAATGTGATAGCTGCGTCATTGGAAACGACTCTCAATCAAAAATTGATGAGCT
droBip1 scf7180000393421:11443-11699 + TTTTTTTGAGTTCGGACGTCTACTTTTTCGCTCATGTCGCCTCTCGTTTGCACCGAGTGCAGTGCAGAAGTTACTGCTACCCAACTTCGTGTGTGTGAGGCCGTTCGGTGCGCGTCGATCTGCCGGCGTGCCTATCACACCGCTTGTGTTGATTTGCCCTCGGAGGCTATAAAACTACTTATTAACATTCCGAACTTAATGTGGCAATGTGATAGCTGCGTCATTGGAAATGATTCGCATTCCAAAATTGATGAGCT
droKik1 scf7180000302522:7173-7404 - GTGC------------------CAATTTCGC-TAT--CGTTATG-TTGTGTGCCGAGTGTAATTTAGAAGTTTCTGCATCCCAGCTTCGCTCTACAGAGGCTGTTCGCTGCGCTTCTCTTTGCCGTCGGGTATTTCATGCTGCCTGCGTTGATTTGCCTGCCGATGCAATCAAACTCTTACTTAAT---CCGAATATACTGTGGCAGTGCGATGGCTGTGTTGTAGCCAATGACTCACACTCAAAAATTGATGAACT
droEle1 scf7180000491207:6085-6308 - TAT-------------------------CGC-AATGTC------CTACTGTGCTGAGTTCAAAACAGAAGTGACTGCTGCCCAGCCTCGCTGCTTTGACGCTGTTCGCTGTTCCTCGTTTTGCCAACGCGCCTATCATATCGCTTGTGTTGACC-CCAGGCAAAGGCGGTCAAACTTCTAACAAACTCGCCGAATATTTTGTGGCAATGCGCTAGTAGTGTGTTAGCGAATGATTCGCATTCTAAAATTGACGAACT
droRho1 scf7180000770804:1182-1198 + GTCTGA--------------------------------------------------------------GGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAT
droBia1 scf7180000302052:26432-26669 + GTTT------------------TCTTTTCGC-TATGAATTCTTATTCGTGTTCCGAGTGCAATGCTGAAGTTACAGCAGCGCAGCTTCGCGGTTTTGAGGCGGTTCGTTGCTTATCGCTTTGTCGTCGTACTTTTCACACTGCATGTGTTGATCTCCCGGAGGATGCTATTAGATTATTAACAAATATGCCGAATCTACTCTGGCAGTGTGATCGCTGTGTTGTGAGTAATGATTCATACTCCAAAATCGATGAAGT
droTak1 scf7180000415919:16125-16362 - GTTACT-------CTA-----TTCTTTCTGC-TATGACTC------TTTGCACCGAATGCAATTCCGAGGTTACCGCTACACAGCTGCGTTGCTTTGATGCCATCCGCTGTTCGTCTGTTTGCCGCCGTGTTTTTCATATTGCCTGTATTGATTTGCAGCCAGATTCGATTAATTTTCTTACGAATTTGCCAAATATTATTTGGCAATGTGATTACTGTGTTGTCGGCCATGACTCGCAGTCTAAAATTGAGGAACT
droYak3 v2_chrUn_1603:15586-15795 + T--------------------------------ATGACTCTTTATTCGTATTCTGAGTGCTATGTCGAAGTTACTGCTTCCCAACTTCGAACCTTTGAAAA------------GTCGCTTTGTCATCGCACTT-TAACATCGCACATCGCGATTAACCAGAAGATGCTATAAAATTACTCATTAACATGCCAAATCTTCTCTGGCAGTGTGACAGTTGTGTAGTTAGCAATAATTCGCA--CACAAATTTATGATTT
droEre2 scaffold_4845:587738-587959 - CGTTTT----------------CAATTCCGA-TTTGGCTCTTCATTCGTGTGTTGAGTGTAATTC-GAAGTTACTG----------------CTTCGATGCGTTGCGTTATTCGTCGATTGGTTGTCGCATAT-TCATATAGCTTGTGTTGATTTAGCAGAATAGGCTATAAAATTACTTATTAACATGCTAAATATACTCTTGCAGCTTAATAGTCGTGTAGTGAGGAATGACTTGCACACACAGACTTATGAGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTCTCTTGCTACGGTA-----TCCATGTCGC-TATGTCGCTTTATTATTGCTCGGAATGCAATTCGGATGTAACTGCCGCTCAGCTTCGTTGCTTTGAGGCTGTCCGCTGTTCTTCTTTGTGCCGCCGAGCGTTTCATTTGACGTGCATCGATTTGCGCGCAGACGCAGTTAAACTTTTAACAAATCTGCCTAATTTGTTATGGCAGTGTGATAACTGTGTGGTTGCGTATGACTCGCATTCGAAAATAGATGAGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................TATTATTGCTCGGAATGCAATTCGGATG...........................................................................................................................................................................................2811.0010100000000
......TGCTACGGTA-----TCCATGTCGC-TATG.............................................................................................................................................................................................................................2411.0010100000000
....................................................................................................................................TTTCATTTGACGTGCATCGATTTGC....................................................................................................2520.5010100000000
.................................................................................................................TTCTTTGTGCCGCCGAGCGTTTCATT......................................................................................................................2620.5010100000000
.......................................................................................................TCCGCTGTTCTTCTTTGTGCC.....................................................................................................................................2130.3310000000010
..........................................................................................................................................................................................................GGCAGTGTGATAACTGTGTGGTT................................2340.2510100000000
..........................................................................................TGCTTTGAGGCTGTCCGCTGTTC................................................................................................................................................2350.2010100000000
.....................................................................................TTCGTTGCTTTGAGGCTGTCCGCTG...................................................................................................................................................2550.2010000000100
................................................................................................GAGGCTGTCCGCTGTTCTTCTTTG.........................................................................................................................................2450.2010100000000
..........................................................................................................................................................................TAAACTTTTAACAAATCTGCCTAATT.............................................................2650.2010100000000
...............................................................................................................................................................................................TAATTTGTTATGGCAGTGTG..............................................2050.2010000000100
...............................................................................................TGAGGCTGTCCGCTGTTCTTCTTTG.........................................................................................................................................2550.2010000000100
..........................................................................................TGCTTTGAGGCTGTCCGCTG...................................................................................................................................................2050.2010100000000
.....................................................................................TTCGTTGCTTTGAGGCTGTCCGCT....................................................................................................................................................2450.2010100000000
.......................................................................................................................................................................AGTTAAACTTTTAACAAATCT.....................................................................2150.2010000000100
..................................................................................................................................................................GACGCAGTTAAACTTTTAACAAATC......................................................................2550.2010100000000
droPer2
TTCTCTTGCTACGGTA-----TCCATGTCAC-TATGTCGCTTTATTATTGCTCGGAATGCTATTCGGACGTAACTGCCGCTCAGCTTCGTTGCTTTGAGGCTGTCCGCTGTTCTTCTTTGTGGCGCCAAGCGTTTCATTTGACGTGCATCGATTTGCGCGCAGACGCAGTTAAACTTTTAACAAATCTGCCTAATTTGTTATGGCAGTGTGATAACTGTGTGGTTGCGAATGACTCGCATTCGAAAATAGATGAGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................TGTCGCTTTATTATTGCTCGGAA........................................................................................................................................................................................................2340.251010000
.....................................................................................................................................TTCATTTGACGTGCATCGATTTGC....................................................................................................2450.201000001
...................................................................................................................................................................ACGCAGTTAAACTTTTAACAAATCTGCC..................................................................2850.201010000
......................................................................................................................................TCATTTGACGTGCATCGATTTT.....................................................................................................2250.201010000
..........................................................................................................................................................................TAAACTTTTAACAAATCTGCCTAATT.............................................................2650.201010000
......................................................................................................................................................................CAGTTAAACTTTTAACAAATCTGCC..................................................................2550.201010000
..................................................................................................................................................................................................TTTGTTATGGCAGTGTGATAACTGTG.....................................2660.171010000
..................................................................................................................................................................................................TTTGTTATGGCAGTGTGATAACT........................................2360.171010000
.....................................................................................................................................................................................................................................ATGACTCGCATTCGAAAATAGATG....2470.141100000
..........................................................................................TGCTTTGAGGCTGTCCGCT....................................................................................................................................................1980.131010000
........................................................................................................................................................................................................................TGTGTGGTTGCGAATGACTCGCAA.................24110.091010000
droWil2
TAGTTTTTGTGAAGTA-----TCTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
C----------------------------GC-TAAGCCGTTTCGCTTTTGTGTTGAGTGCAGTACTAAGGTATTAACAGCTCAGCTGAGAAACTTTGATGCTGTCCGGTGCTCTTCAATTTGCCGCATTGAGTTATC-----ATTGCATT---------------------------------GAGTTATCAAATCTACTATGGCAGTGTGACTACTGTGTCGGGCTTACTGATACTCAAACGAAAATTGATGAGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droAna3
TTTCCTTGCGTTCGGACGTT-TATTTTCTGC-TATGTCGCCGCTCGTTTGTTCGGAGTGCAGTGGGGAAGTTACTGCTACGCAGCTTCGTGGGTGTGAGGCCGTTCGGTGCTCATCGATCTGCCGCCGTGCATATCATACGGATTGTATTGATTTGCCATCCGAGGCTATAAAACTTCTAATAAACATTCCAAACTTATTGTGGCAATGTGATAGCTGCGTCATTGGAAACGACTCTCAATCAAAAATTGATGAGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................TCGTTTGTTCGGAGTGCAGTGG................................................................................................................................................................................................22200.204040000
.......................TTTTCTGC-TATGTCGCCGCTCGTTT................................................................................................................................................................................................................2570.141100000
.......................TTTTCTGC-TATGTCGCCGCTCGTT.................................................................................................................................................................................................................2470.141100000
..........................TCTGC-TATGTCGCCGCTCGTTT................................................................................................................................................................................................................2270.141100000
..................................................................................................................................................................................TAATAAACATTCCAAACTTATTGTGGC....................................................2770.141010000
........................................................................................................TCGGTGCTCATCGATCTGCCGCCGTG...............................................................................................................................26200.102200000
................................................TGTTCGGAGTGCAGTGGGGAAGTTA........................................................................................................................................................................................25200.102200000
...................................................TCGGAGTGCAGTGGGGAAGTTACT......................................................................................................................................................................................24200.102020000
........................................................................................GTGGGTGTGAGGCCGTTCGGTGC..................................................................................................................................................23200.102100010
................................................TGTTCGGAGTGCAGTGGGGAAGTT.........................................................................................................................................................................................24200.102020000
...........................................TCGTTTGTTCGGAGTGCAGTGGGG..............................................................................................................................................................................................24200.102020000
.....................TATTTTCTGC-TATGTCGCCGCTCG...................................................................................................................................................................................................................24110.091100000
.............GGACGTT-TATTTTCTGC-TATGTCGCC........................................................................................................................................................................................................................26150.071010000
................................TATGTCGCCGCTCGTTTGTTCGGAGTG......................................................................................................................................................................................................27190.051100000
......................................................................................................GTTCGGTGCTCATCGATCTGCCGCC..................................................................................................................................25200.051010000
..............................................TTTGTTCGGAGTGCAGTGGGGAAGTT.........................................................................................................................................................................................26200.051000010
.........................................................TGCAGTGGGGAAGTTACTGCTACGCAGC............................................................................................................................................................................28200.051100000
..............................................................................................................CTCATCGATCTGCCGCCGTGC..............................................................................................................................21200.051100000
.....................................................................GTTACTGCTACGCAGCTTCGTGGGC...................................................................................................................................................................25200.051010000
...........................................TCGTTTGTTCGGAGTGCAGTGGGGT.............................................................................................................................................................................................25200.051010000
........................................................................ACTGCTACGCAGCTTCGTGGGC...................................................................................................................................................................22200.051010000
................................................TGTTCGGAGTGCAGTGGGGAAGTTAC.......................................................................................................................................................................................26200.051010000
.......................................................................................................................................................................TATAAAACTTCTAATAAACATTCCAAACT.............................................................29200.051010000
..........................................................................TGCTACGCAGCTTCGTGGGTGTGAG..............................................................................................................................................................25200.051100000
.....................................................................................TTCGTGGGTGTGAGGCCGTTCGG.....................................................................................................................................................23200.051010000
..................................TGTCGCCGCTCGTTTGTTCGGAGTG......................................................................................................................................................................................................25200.051100000
...........................................TCGTTTGTTCGGAGTGCAGTGGGGAA............................................................................................................................................................................................26200.051100000
.............................................................................TACGCAGCTTCGTGGGTGTGAGGCC...........................................................................................................................................................25200.051010000
...........................................TCGTTTGTTCGGAGTGCAGTGGG...............................................................................................................................................................................................23200.051001000
.............................................GTTTGTTCGGAGTGCAGTGG................................................................................................................................................................................................20200.051100000
.......................................................................TACTGCTACGCAGCTTCGTGGGTGTG................................................................................................................................................................26200.051001000
.....TTGCGTTCGGACGTT-TATTTTCTGC-.................................................................................................................................................................................................................................25200.051001000
..........................................CTCGTTTGTTCGGAGTGCAGTGGGG..............................................................................................................................................................................................25200.051100000
...........................................TCGTTTGTTCGGAGTGCAGTGGGGAAG...........................................................................................................................................................................................27200.051100000
.................................................................................................AGGCCGTTCGGTGCTCATCGATCTGC......................................................................................................................................26200.051100000
.........................................................................................................CGGTGCTCATCGATCTGCCGC...................................................................................................................................21200.051001000
..............................................................TGGGGAAGTTACTGCTACGCAGCT...........................................................................................................................................................................24200.051010000
........................................................................................................TCGGTGCTCATCGATCTGCCGCC..................................................................................................................................23200.051010000
..................................................................................................GGCCGTTCGGTGCTCATCGATCTGC......................................................................................................................................25200.051010000
...................................................TCGGAGTGCAGTGGGGAAGTTAC.......................................................................................................................................................................................23200.051100000
................................................TGTTCGGAGTGCAGTGGG...............................................................................................................................................................................................18200.051100000
droBip1
TTTTTTTGAGTTCGGACGTCTACTTTTTCGCTCATGTCGCCTCTCGTTTGCACCGAGTGCAGTGCAGAAGTTACTGCTACCCAACTTCGTGTGTGTGAGGCCGTTCGGTGCGCGTCGATCTGCCGGCGTGCCTATCACACCGCTTGTGTTGATTTGCCCTCGGAGGCTATAAAACTACTTATTAACATTCCGAACTTAATGTGGCAATGTGATAGCTGCGTCATTGGAAATGATTCGCATTCCAAAATTGATGAGCTSizeHit CountTotal NormTotal
No Reads
droKik1
GTGC------------------CAATTTCGC-TAT--CGTTATG-TTGTGTGCCGAGTGTAATTTAGAAGTTTCTGCATCCCAGCTTCGCTCTACAGAGGCTGTTCGCTGCGCTTCTCTTTGCCGTCGGGTATTTCATGCTGCCTGCGTTGATTTGCCTGCCGATGCAATCAAACTCTTACTTAAT---CCGAATATACTGTGGCAGTGCGATGGCTGTGTTGTAGCCAATGACTCACACTCAAAAATTGATGAACTSizeHit CountTotal NormTotal
No Reads
droEle1
TAT-------------------------CGC-AATGTC------CTACTGTGCTGAGTTCAAAACAGAAGTGACTGCTGCCCAGCCTCGCTGCTTTGACGCTGTTCGCTGTTCCTCGTTTTGCCAACGCGCCTATCATATCGCTTGTGTTGACC-CCAGGCAAAGGCGGTCAAACTTCTAACAAACTCGCCGAATATTTTGTGGCAATGCGCTAGTAGTGTGTTAGCGAATGATTCGCATTCTAAAATTGACGAACTSizeHit CountTotal NormTotal
No Reads
droRho1
GTCTGA--------------------------------------------------------------GGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTATSizeHit CountTotal NormTotal
No Reads
droBia1
GTTT------------------TCTTTTCGC-TATGAATTCTTATTCGTGTTCCGAGTGCAATGCTGAAGTTACAGCAGCGCAGCTTCGCGGTTTTGAGGCGGTTCGTTGCTTATCGCTTTGTCGTCGTACTTTTCACACTGCATGTGTTGATCTCCCGGAGGATGCTATTAGATTATTAACAAATATGCCGAATCTACTCTGGCAGTGTGATCGCTGTGTTGTGAGTAATGATTCATACTCCAAAATCGATGAAGTSizeHit CountTotal NormTotal
No Reads
droTak1
GTTACT-------CTA-----TTCTTTCTGC-TATGACTC------TTTGCACCGAATGCAATTCCGAGGTTACCGCTACACAGCTGCGTTGCTTTGATGCCATCCGCTGTTCGTCTGTTTGCCGCCGTGTTTTTCATATTGCCTGTATTGATTTGCAGCCAGATTCGATTAATTTTCTTACGAATTTGCCAAATATTATTTGGCAATGTGATTACTGTGTTGTCGGCCATGACTCGCAGTCTAAAATTGAGGAACTSizeHit CountTotal NormTotal
No Reads
droYak3
T--------------------------------ATGACTCTTTATTCGTATTCTGAGTGCTATGTCGAAGTTACTGCTTCCCAACTTCGAACCTTTGAAAA------------GTCGCTTTGTCATCGCACTT-TAACATCGCACATCGCGATTAACCAGAAGATGCTATAAAATTACTCATTAACATGCCAAATCTTCTCTGGCAGTGTGACAGTTGTGTAGTTAGCAATAATTCGCA--CACAAATTTATGATTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CGTTTT----------------CAATTCCGA-TTTGGCTCTTCATTCGTGTGTTGAGTGTAATTC-GAAGTTACTG----------------CTTCGATGCGTTGCGTTATTCGTCGATTGGTTGTCGCATAT-TCATATAGCTTGTGTTGATTTAGCAGAATAGGCTATAAAATTACTTATTAACATGCTAAATATACTCTTGCAGCTTAATAGTCGTGTAGTGAGGAATGACTTGCACACACAGACTTATGAGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:28 AM