dps_1731

exon [dpse_GLEANR_7298:4]; CDS [Dpse\GA28025-cds]; CDS [Dpse\GA28025-cds]; exon [dpse_GLEANR_7298:3]; intron [Dpse\GA28025-in]

Name	Class	Family	Strand
(CGA)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------------------------------################################################## CGCCACATTAACGCCGCCATCGATCCGTCGCCGTCGTCGTCGTCGTCTACGTCGTCCAAGTGTTTTCCAGCGGAAAACGATATACACGGCTACGTGCTGGCCAGCAGCGGAAATCCACGTTGCAGTCGGAGTAGCCGCAGCAGCAGCTCCTCCTCCTCCGCAGACTGCTCCCCTGTCCTTGGGG *********************************************************.....((((.((...............((((.....))))....))...))))**********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	M059 embryo	GSM444067 head	SRR902011 testis
...................................................................................................................CACGTTGCAGTCGGAGTAGCCGCAG............................................	25	0	1	3.00	3	1	1	0	0	1
.............................................................................................................GAAATCCACGTTGCAGTCGGAGTAGCC................................................	27	0	1	1.00	1	1	0	0	0	0
.................................................................................................................TCCACGTTGCAGTCGGAGTAGC.................................................	22	0	1	1.00	1	1	0	0	0	0
......................ATCCGTCGCCGTCGTCGTCGTC............................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
...........................................CGTCTACGTCGTCCAAGTGTTTT......................................................................................................................	23	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................AGTCGGAGTAGCCGCAGCAGC........................................	21	0	1	1.00	1	1	0	0	0	0
..............................................................................TATATACCCGGCTACGTGCTGGCCAGC...............................................................................	27	2	1	1.00	1	0	0	1	0	0
......................................................................................CGGCTACGTGCTGGCCAGCAGCGGAA........................................................................	26	0	1	1.00	1	0	1	0	0	0
...........................................................GTGTTTTCCAGCGGAAAACG.........................................................................................................	20	0	1	1.00	1	1	0	0	0	0
...........CGCCGCCATCGATCCGTC...........................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
..............................................CTACGTCGTCCAAGTGTTTTCCAGCGGA..............................................................................................................	28	0	1	1.00	1	0	1	0	0	0
..................................................GTCGTCCAAGTGTTTTCCAGCGGAA.............................................................................................................	25	0	1	1.00	1	0	0	0	1	0
..............................................................................GATATACACGGCTACGTGCTGGC...................................................................................	23	0	1	1.00	1	1	0	0	0	0
...........................................................................AACGATATACACGGCTACGTGCTGG....................................................................................	25	0	1	1.00	1	1	0	0	0	0
...........................................CGTCTACGTCGTCCAAGTGT.........................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
..................................................................................................................CCACGTTGCAGTCGGAGTAGCCGCAGC...........................................	27	0	1	1.00	1	1	0	0	0	0
..................................................................................................AGCCAGCAGCGGAAATCCACGTT...............................................................	23	1	1	1.00	1	0	1	0	0	0
............................................................................................................GGAAATCCACGTTGCAGTCGGA......................................................	22	0	1	1.00	1	1	0	0	0	0
..............................................................................GATATACACGGCTACGTGCT......................................................................................	20	0	1	1.00	1	1	0	0	0	0
..........................................................................................................GCGGAAATCCACGTTGCAGTCGGAGTAGC.................................................	29	0	1	1.00	1	0	0	1	0	0
...........................................................GTGTTTTCCAGCGGAAAACGATA......................................................................................................	23	0	1	1.00	1	0	0	0	1	0
.................................................................................ATACACGGCTACGTGCTGGCC..................................................................................	21	0	1	1.00	1	0	0	1	0	0
.......................................................................GGAAAACGATATACACGGCC.............................................................................................	20	1	1	1.00	1	0	0	1	0	0
.........................CGCCGTCGTCGTCGTCGTCGTCTACGTC...................................................................................................................................	28	2	15	0.07	1	1	0	0	0	0

GCGGTGTAATTGCGGCGGTAGCTAGGCAGCGGCAGCAGCAGCAGCAGATGCAGCAGGTTCACAAAAGGTCGCCTTTTGCTATATGTGCCGATGCACGACCGGTCGTCGCCTTTAGGTGCAACGTCAGCCTCATCGGCGTCGTCGTCGAGGAGGAGGAGGCGTCTGACGAGGGGACAGGAACCCC **********************************************************************.....((((.((...............((((.....))))....))...))))*********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	SRR902012 CNS imaginal disc	GSM343916 embryo
..........................................................................................................CGAATTCAGGTGCAACGTCAG.........................................................	21	3	1	1.00	1	0	1	0	0
.......................................AGCAGCAGATGCAGCAGGT..............................................................................................................................	19	0	1	1.00	1	1	0	0	0
...........................................................................................................GAATTCAGGTGCAACGTCAG.........................................................	20	3	9	0.22	2	0	1	1	0
........................................................................................................................................................GATGAGGCGTCTGACGAT..............	18	2	5	0.20	1	1	0	0	0
.........................................................................................................................................................AGAAGGCGCTTGACGAGGG............	19	3	20	0.10	2	2	0	0	0
..............................................................................................................TTCAGGTGCAACGTCAGG........................................................	18	2	14	0.07	1	1	0	0	0
......TAAATGCGGCGGTTGCTACG..............................................................................................................................................................	20	3	15	0.07	1	1	0	0	0
..............................................................................................................................................CGTCTAGGTGGAAGAGGCGT......................	20	3	17	0.06	1	1	0	0	0
..........................................................................................................CGAATTCAGGTGCAACGTC...........................................................	19	3	18	0.06	1	0	0	0	1

Species	Coordinate	ID	Alignment
dp5	4_group5:1859145-1859328 -	dps_1731	CGCCACATTAACG-CCGCC--ATCGATCCGTCGCCGTCGTCGTCGTCGTCTAC-----------------------GTCGTCCAAGTGTT---------TTCCAGCGGAAAACG---ATATAC------ACGGCTACGTGCTGGCCAGCAGCGGAAA-----------------------------------------T------------CCACGTTGCA------GTCGGAGTAGCCGCAGCAGCAGCTCCTCCTCCTCC---------------------------------GCAGACTGCTCCC------------------------------CTGTCCTTGGGG
droPer2	scaffold_5:6264472-6264661 -		CGCCACATCAACG-CCGCC--ATCGATCCGTCGCCGTCGTCGTCGTCGTCTAC-----------------------GTCGTCCAAGTGTT---------TTCCAGCGGAAAACG---ATATAC------ACGGCTACGTGCTGGCCAGCAGCGGAAA-----------------------------------------T------------CCACGTTGCAGTCGGAGTAGCCGCAGCAGCAGCAGCAGCTCCTCCTCCTCC---------------------------------GCAGACTGCTCCC------------------------------CTGTCCTTGGGG
droWil2	scf2_1100000004521:6902230-6902362 -		TCGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGTC-----TA---CGGATT------ACGGCTACGTGCTGGCCACTAAACGAAA-----------------------------------------T------------ACGGC---------------GAGTAAAAGTGGTCGAAGTTCCTCTCCTTC------TG------------CCTCTTCCTCGTCGGCGGAGAGTTCAC------------------------------CCGTTCTGGGTG
droVir3	scaffold_12963:2596429-2596590 -		CGTC--------GCC-------------------------------------------------------------------CAA------------ATTTCTAACG------G---ACAACA------ACAGCTACGGCCTGGCCAACAACAAGAG-----------------------------------------C------------AGCAGCA------------GCAGCAGCAGCAGCAGCAGCGCCTCCTCCTC------CGCCTCCTCCACCACATCC---------GCCGAGTGCTCGCCCGTGCTGTCACGAATCAGCACAGCGACAG----CCTT--AG
droMoj3	scaffold_6500:12794313-12794446 -		CGTC--------GCC-------------------------------------------------------------------CAA------------ATTTCCAACG------G---ACAACA------ACAGCTACGTGCTGGCCAACAACAAGAG-----------------------------------------C------------AACAACA------------GCAGCA------GCAGCAGCACCACCACCAGCGGCTCCTCCTCTTCCTCTTCATCCTCCTCGCC-----AGTGTT--------------------------------G----G--TGCGT
droGri2	scaffold_15252:2210103-2210235 -		A-----------------------------------------------------------------------------------------------------------------------------------GCTACGTGCTGGCTACCAACAACAACGCCAACAACAACAACCACAACGACGACGAC-----GGGAGC------------AGCAACA------------GCAATAGTAGCAGCAGCAGTAGCTCCTCG---------------------------------CC-----AGTGTTTAG----------TCGAGA---GGGAGCCGGAG----GCTC--AT
droAna3	scaffold_12984:714291-714427 +		TAAC--------ACT-------------------------------------------------------------------GTA-----CTCGCCTATCCAGAGCT-----CC---CTACTTACGTCACCGGCTACGTGCTGGCCACTAAAAGCAA-----------------------------------------A--------CG-AATCACCA------------GCAGCAGTCGGAGCAGCAGCAGCTCCTCTGCG---------------------------------GCCGATTTCTCCC------------------------------CGCCTCTGGGCA
droBip1	scf7180000395866:21234-21374 -		CGGC--------ACCCACC--GGGGGTCCGCCGCCTCAGCAGT----------------------------------------------------------------------------------------------------------------ATCTTCAA--ATACCCACCAGCATCCTGCTGGCCGCCGCCCAGC------------AGTTGCA---------GCAACACCACCAGCAGCAGCACCTCCAGGCCATTT---------------------------------ACGCGAAG-CCCC----------------------------AGCCC--CCTGCGG
droKik1	scf7180000302808:7606-7742 +		CAGC--------AGA-------------------------------------------------------------------GCA-----ATTGTTGATACAGAGGC-----AC---ACACCC------ACGGCTACGTGCTGGCCACCACTAGCAG-----------------------------------------CAACACAAACGAAATCAGCA------------GCGGGAGCCGCAGCAGCAGCTCATCCTCG------------------------------------GGCCACTGTTCGC------------------------------CGCTCCTGGGTG
droFic1	scf7180000453158:51702-51815 -		AC---------------------------------------------------------------------------------------------------------------G---AGGAGC------ACGGCTACGTTCTGGCCACCAACAGCAG-----------------------------------------C------------AGCAGTAGCAGCCACCGCCGCCGTAGCCGGAACAGAAGTTCCGCCGACAGC---------------------------------AGCGACGGCTCGC------------------------------CCCCCCTGGGCA
droEle1	scf7180000490616:4927-5017 -		CTGT--------AT---------------------------------------------------------------------------------------------------T---CCCCTT------ACAGCTCCGTTCTGGGCCCAAGCAGCCA-----------------------------------------C------------A---GCT------------TCCGTAGCCAGAGCAGCAGTTCCAACGACAGC---------------------------------AGCT------TG------------------------------------CCTACAA
droRho1	scf7180000780111:3927-4022 +		TTGG-----------------------------------------------------------------------------------------------------C-GAACTGGATTCCCTTT------ACGGCTTCGTTCTGGCCACCAGCAGCCA-----------------------------------------C------------C------------------GCCGCAGCCACAGCAGGAGTTCTGCTGGCAGC---------------------------------AGC------TCGC------------------------------C------CACCA
droTak1	scf7180000414595:4388-4521 -		CATT-----AAC----------------------------------------------------------------------ACG-----G-----AATCCAA-ATA-----CG---TGGCCA------ACGGCAACGTTCTGGCCACCACCAGTAA-----------------------------------------A------------AACAGCAGCAGCAACGTCCGCCGCAGCCGGAGCAGCAGTTCCGTCGAGAGC---------------------------------TGCGACGGTTCTT------------------------------CGCTCCTAGTTG
droEug1	scf7180000407335:43186-43288 +		CGA-------------------------------------------------------------------------------------------------------------------AGCAC------TCAGCTGCGCTCTGGCCAGACAAAA-AA----A------------------------------------A---------A-AATC---AGCCATTACTCCCGCCGCAGCCATAGCGCCAGTTCTATCGATAGC---------------------------------TGCAACGG---------------------------------------CATTCACG
dm3	chr2L:22142970-22143090 +		GAAA---TTAAC------------------------------------------------------------------------------------AATTCAAAGCC-----CA---AGACAA------ACGGCAGCGTTCTGGCCACCACCAGACA-----------------------------------------A------------AATAGTG------------GCAGCACCCGGAGCAGCAGCTCCGCCGATAGC---------------------------------TGTGACGGTATAT------------------------------CGCTCCTCGGCC
droSim2	2l:21406864-21407048 +		CGTGTAATTAGCA-GTCTCCCCTATATTCGATTGAGA-----------CCTGCATGAAAGAAATGTTTTATTCTCCATGATCTTAGGGAG---------AAC-CGCG------G---GGAATG------CAGGCAGCGTTCTGGCCACCACCAGAAA-----------------------------------------A------------AACAGTG------------GCAGCACCCGGAGCAGCAGCTCCGCCGATAGC---------------------------------TGTGACGGTTTAT------------------------------CGCTCCTCGGCC
droSec2	scaffold_28:750398-750515 +		ATTA------AC------------------------------------------------------------------------------------AATTCAAAGCC-----CA---AGACAA------ACGGCAGCGTTCTGGCCACCACCAGAAA-----------------------------------------A------------AACAGTG------------GCAGCACCCGGAGCAGCAGCTCCGCCGATAGC---------------------------------TGTGACGGTTTAT------------------------------CGCTCCTCGGCC
droYak3	2R:481609-481729 -		GAAA---TTAAC------------------------------------------------------------------------------------AATTCAAAACC-----CA---AGGGAA------ACGGCAGAACTCTGGCCACCACCAGCCA-----------------------------------------A------------AACAGTA------------GCAGCACCCGGGGCAGCAGTTCCGTCGATAGT---------------------------------TGTGACGGTTTAT------------------------------CACTTCTAGGCC
droEre2	scaffold_4845:2273920-2274038 -		AATT-----AAC------------------------------------------------------------------------------------AATTCACAACT-----TA---AGACAA------ACGGCAAAGCTCTGGCCACCACCAGCAA-----------------------------------------A------------AACAGTA------------GCATCAACCGGAGCAGCAGTTCCGCCGATAGC---------------------------------TGTGACGGTTTAT------------------------------TGCTTCTCGGCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

CGCCACATTAACG-CCGCC--ATCGATCCGTCGCCGTCGTCGTCGTCGTCTAC-----------------------GTCGTCCAAGTGTT---------TTCCAGCGGAAAACG---ATATAC------ACGGCTACGTGCTGGCCAGCAGCGGAAA-----------------------------------------T------------CCACGTTGCA------GTCGGAGTAGCCGCAGCAGCAGCTCCTCCTCCTCC---------------------------------GCAGACTGCTCCC------------------------------CTGTCCTTGGGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................CACGTTGCA------GTCGGAGTAGCCGCAG...........................................................................................................	25	1	3.00	3	0	1	0	0	0	0	1	0	1	0
.........................................................................................................................................................GAAA-----------------------------------------T------------CCACGTTGCA------GTCGGAGTAGCC...............................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................T------------CCACGTTGCA------GTCGGAGTAGC................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................ATCCGTCGCCGTCGTCGTCGTC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................CGTCTAC-----------------------GTCGTCCAAGTGTT---------TT.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................A------GTCGGAGTAGCCGCAGCAGC.......................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................CGGCTACGTGCTGGCCAGCAGCGGAA..................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................GTGTT---------TTCCAGCGGAAAACG---.........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........CG-CCGCC--ATCGATCCGTC..............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................CTAC-----------------------GTCGTCCAAGTGTT---------TTCCAGCGGA.................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................GTCGTCCAAGTGTT---------TTCCAGCGGAA................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................G---ATATAC------ACGGCTACGTGCTGGC.............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................AACG---ATATAC------ACGGCTACGTGCTGG..............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................CGTCTAC-----------------------GTCGTCCAAGTGT.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CCACGTTGCA------GTCGGAGTAGCCGCAGC..........................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................GGAAA-----------------------------------------T------------CCACGTTGCA------GTCGGA.....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................G---ATATAC------ACGGCTACGTGCT................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................GCGGAAA-----------------------------------------T------------CCACGTTGCA------GTCGGAGTAGC................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................GTGTT---------TTCCAGCGGAAAACG---ATA......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................ATAC------ACGGCTACGTGCTGGCC............................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................GGAAAACG---ATATAC------ACGGCC.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

CGCCACATCAACG-CCGCC--ATCGATCCGTCGCCGTCGTCGTCGTCGTCTAC-----------------------GTCGTCCAAGTGTT---------TTCCAGCGGAAAACG---ATATAC------ACGGCTACGTGCTGGCCAGCAGCGGAAA-----------------------------------------T------------CCACGTTGCAGTCGGAGTAGCCGCAGCAGCAGCAGCAGCTCCTCCTCCTCC---------------------------------GCAGACTGCTCCC------------------------------CTGTCCTTGGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................GATCCGTCGCCGTCGTCGTC..................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................C---------------------------------GCAGACTGCTCCC------------------------------CTGTCCTTGG..	24	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................A-----------------------------------------T------------CCACGTTGCAGTCGGAGT.........................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................GCGGAAA-----------------------------------------T------------CCACGTTGCAGTCGGA...........................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TGCAGTCGGAGTAGCCGCAGC................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................CGTCTAC-----------------------GTCGTCCAAGT.......................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................ATCCGTCGCCGTCGTCGTCGTC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................GTCGTCGTCGTCTAC-----------------------GTC...............................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................GTCCAAGTGTT---------TTCCAGCGGAA................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................CCACGTTGCAGTCGGAGTAGCCGCAGC................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................AA-----------------------------------------T------------CCACGTTGCAGTCGGA...........................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............CGCC--ATCGATCCGTCGCCGTCGTCGTC..................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......ATCAACG-CCGCC--ATCGAT...................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
........................GATCCGTCGCCGTCGTCGTCGG................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............G-CCGCC--ATCGATCCGTCGCCGTCGTC.....................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................GTCGTCCAAGTGTT---------TTCCAGCGGAAA...............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............CGCC--ATCGATCCGTCGCCGTCGT......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................GCGGAAA-----------------------------------------T------------CCACGTTGCAGTCGGAGTAGC......................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................CGGAAA-----------------------------------------T------------CCACGTTGCAGTCGGA...........................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......TCAACG-CCGCC--ATCGATCCGTC..............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................GTCGCCGTCGTCGTCGTCGTC............................................................................................................................................................................................................................................................................................................	21	20	0.25	5	5	0	0	0	0	0

droWil2

TCGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGTC-----TA---CGGATT------ACGGCTACGTGCTGGCCACTAAACGAAA-----------------------------------------T------------ACGGC---------------GAGTAAAAGTGGTCGAAGTTCCTCTCCTTC------TG------------CCTCTTCCTCGTCGGCGGAGAGTTCAC------------------------------CCGTTCTGGGTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................C-----TA---CGGATT------ACGGCTACGTGCTGGC.............................................................................................................................................................................................................	25	1	8.00	8	0	1	5	1	1
..........................................................................................................C-----TA---CGGATT------ACGGCTACGTGCT................................................................................................................................................................................................................	22	1	6.00	6	0	0	3	3	0
.........................................................................................................................................................GAAA-----------------------------------------T------------ACGGC---------------GAGTAAAAGT.............................................................................................................	20	1	3.00	3	0	0	3	0	0
..........................................................................................................................................................................................................................................................................................CTCTTCCTCGTCGGCGGAGAGTTCAC------------------------------C...........	27	1	3.00	3	3	0	0	0	0
.......................................................................................................CGTC-----TA---CGGATT------ACGGCTACGTGCT................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	1	0
TCGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGTC-----TA---CG.......................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................TCTTCCTCGTCGGCGGAGA................................................	19	1	2.00	2	1	0	1	0	0
.................................................................................................................................................CACTAAACGAAA-----------------------------------------T------------ACGGC---------------GAGTA..................................................................................................................	23	1	1.00	1	0	1	0	0	0
.........................................................................................................TC-----TA---CGGATT------ACGGCTACGTGCTGGC.............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................AAAAGTGGTCGAAGTTCCTCTCCTT..........................................................................................	25	1	1.00	1	0	0	1	0	0
.......................................................................................................................GATT------ACGGCTACGTGCTGGC.............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................GTCGGCGGAGAGTTCAC------------------------------C...........	18	1	1.00	1	1	0	0	0	0
TCGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGT....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................AAAGTGGTCGAAGTTCCTCTCCT...........................................................................................	23	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................C------TG------------CCTCTTCCTCGTCGGC.....................................................	19	1	1.00	1	0	0	0	1	0
.CGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGTC-----TA---CGGAT....................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.................................................................................................................................................CACTAAACGAAA-----------------------------------------T------------ACGGC---------------G......................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................GGCGGAGAGTTCAC------------------------------CCGTTCTGGG..	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................GAAA-----------------------------------------T------------ACGGC---------------GAGTAAAAGTGGTC.........................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................GAAGTTCCTCTCCTTC------TG------------CCT..................................................................	21	1	1.00	1	0	1	0	0	0
............CA----------------------TCG---------------------------------------------------------TCTCCATCGTC-----TA---CGGATT------.............................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.................................................................................................................................................CACTAAACGAAA-----------------------------------------T------------ACGGC---------------GAGTAAAAGT.............................................................................................................	28	1	1.00	1	0	1	0	0	0
........................................................................................................GTC-----TA---CGGATT------ACGGCTACGT...................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................AACGAAA-----------------------------------------T------------ACGGC---------------GAGTAAAA...............................................................................................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................................ATCGTC-----TA---CGGATT------ACGGC........................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................AAACGAAA-----------------------------------------T------------ACGGC---------------GAGT...................................................................................................................	18	1	1.00	1	0	1	0	0	0
.CGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGT....................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................CGTCGGCGGAGAGTTCAC------------------------------CC..........	20	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................TC------TG------------CCTCTTCCTCGTCGGCGGAGA................................................	25	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................AA-----------------------------------------T------------ACGGC---------------GAGTAAAAGTGGTC.........................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................CTTC------TG------------CCTCTTCCTCGTCGGCGGA..................................................	25	1	1.00	1	1	0	0	0	0
.CGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGTC-----..............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..............................................................................................................................................GGCCACTAAACGAAA-----------------------------------------T------------ACGGC---------------GA.....................................................................................................................	23	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................AAACGAAA-----------------------------------------T------------ACGGC---------------GAGTAAA................................................................................................................	21	1	1.00	1	0	0	1	0	0
....................................................................................................CATCGTC-----TA---CGGATT------ACGGC........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
TCGC--------CA----------------------TCG---------------------------------------------------------TCTCCATCGTC-----TA---CGGATT------.............................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................AAACGAAA-----------------------------------------T------------ACGGC---------------GAGTAAAAGT.............................................................................................................	24	1	1.00	1	0	0	1	0	0
........................................................................................................GTC-----TA---CGGATT------ACGGCTACGTGCTGGCC............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
.................................................................................................CTCCATCGTC-----TA---CGGAAC------G............................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	1	0

droVir3

CGTC--------GCC-------------------------------------------------------------------CAA------------ATTTCTAACG------G---ACAACA------ACAGCTACGGCCTGGCCAACAACAAGAG-----------------------------------------C------------AGCAGCA------------GCAGCAGCAGCAGCAGCAGCGCCTCCTCCTC------CGCCTCCTCCACCACATCC---------GCCGAGTGCTCGCCCGTGCTGTCACGAATCAGCACAGCGACAG----CCTT--AG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................TAACG------G---ACAACA------ACAGCTACGG...................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CTAACG------G---ACAACA------ACAGCTACGGCCTGGC.............................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................A------------ATTTCTAACG------G---ACAACA------ACA..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................ACG------G---ACAACA------ACAGCTACGGCCTGGCC............................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CGTC--------GCC-------------------------------------------------------------------CAA------------ATTTCTAACG------G---A........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CG------G---ACAACA------ACAGCTACGGCCTGGCCAAC.........................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGCCAACAACAAGAG-----------------------------------------C------------AGC........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AACG------G---ACAACA------ACAGCTACGGCCTGGCCA...........................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GTGCTGTCACGAATCAGCACA...................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CAA------------ATTTCTAACG------G---ACAACA------ACAGCT.......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AACG------G---ACAACA------ACAGCTACGGCC.................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CCACCACATCC---------GCCGAGTGCT.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CGAGTGCTCGCCCGTGCTG..................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AA------------ATTTCTAACG------G---ACAACA------ACAGC........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACAACAAGAG-----------------------------------------C------------AGCAGCA------------GCAGCA..................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACAACAAGAG-----------------------------------------C------------AGCAGCA------------GC......................................................................................................................	20	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ACAAGAG-----------------------------------------C------------AGCAGCA------------GCAGC...................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAACAAGAG-----------------------------------------C------------AGCAGCA------------GCAGC...................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CAACAACAAGAG-----------------------------------------C------------AGCAGC.....................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................CA------------GCAGCAGCAGCAGCAGCA......................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCGCC.................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................AACAACAAGAG-----------------------------------------C------------AGCAGC.....................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGTC--------GCC-------------------------------------------------------------------CAA------------ATTTCCAACG------G---ACAACA------ACAGCTACGTGCTGGCCAACAACAAGAG-----------------------------------------C------------AACAACA------------GCAGCA------GCAGCAGCACCACCACCAGCGGCTCCTCCTCTTCCTCTTCATCCTCCTCGCC-----AGTGTT--------------------------------G----G--TGCGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................CTCTTCATCCTCCTCGCC-----AGTGTT--------------------------------G----........	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................CAACG------G---ACAACA------ACAGCT.......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................CTACGTGCTGGCCAACAACAAGAG-----------------------------------------C------------AA.........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................TTCCAACG------G---ACAACA------ACAGC........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................CTACGTGCTGGCCAACAACAAGAG-----------------------------------------C------------...........................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................CGTGCTGGCCAACAACAAGAG-----------------------------------------C------------...........................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................G---ACAACA------ACAGCTACGTGCTGGCCAACA........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TCATCCTCCTCGCC-----AGTGTT--------------------------------G----G--T....	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................AACG------G---ACAACA------ACAGCTACGTGCT................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................AGCACCACCACCAGCGGCT....................................................................................	19	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................GGCCAACAACAAGAG-----------------------------------------C------------AACAACA------------G.......................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................AACA------------GCAGCA------GCAGCAGCACCACC..............................................................................................	24	4	0.25	1	1	0	0	0	0	0
....................................................................................................................................................CAACAAGAG-----------------------------------------C------------AACAACA------------GCAGC...................................................................................................................	22	5	0.20	1	0	0	0	0	1	0
.................................................................................................................................................CAACAACAAGAG-----------------------------------------C------------AACAACA------------G.......................................................................................................................	21	6	0.17	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................GCAGCA------GCAGCAGCACCACC..............................................................................................	20	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................CA------------GCAGCA------GCAGCAGCAC..................................................................................................	18	20	0.05	1	0	0	0	0	1	0

droGri2

A-----------------------------------------------------------------------------------------------------------------------------------GCTACGTGCTGGCTACCAACAACAACGCCAACAACAACAACCACAACGACGACGAC-----GGGAGC------------AGCAACA------------GCAATAGTAGCAGCAGCAGTAGCTCCTCG---------------------------------CC-----AGTGTTTAG----------TCGAGA---GGGAGCCGGAG----GCTC--AT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................ACCACAACGACGACGAC-----GGGAGC------------AGC........................................................................................................................................	26	1	1.00	1	0	1

droAna3

TAAC--------ACT-------------------------------------------------------------------GTA-----CTCGCCTATCCAGAGCT-----CC---CTACTTACGTCACCGGCTACGTGCTGGCCACTAAAAGCAA-----------------------------------------A--------CG-AATCACCA------------GCAGCAGTCGGAGCAGCAGCAGCTCCTCTGCG---------------------------------GCCGATTTCTCCC------------------------------CGCCTCTGGGCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................ATCACCA------------GCAGCAGTCGGAGC..........................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................G-AATCACCA------------GCAGCAGTCGGAGCAGCA......................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................CTATCCAGAGCT-----CC---CTACTTACGT...............................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................CTAAAAGCAA-----------------------------------------A--------CG-AATCACCA------------GCAGCA..................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................CTAAAAGCAA-----------------------------------------A--------CG-AATCACCA------------GCAGC...................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................AAAGCAA-----------------------------------------A--------CG-AATCACCA------------GCAGC...................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................GCAGCAGTCGGAGCAGCAGC....................................................................................................	20	2	0.50	1	1	0	0	0	0	0

droBip1

CGGC--------ACCCACC--GGGGGTCCGCCGCCTCAGCAGT----------------------------------------------------------------------------------------------------------------ATCTTCAA--ATACCCACCAGCATCCTGCTGGCCGCCGCCCAGC------------AGTTGCA---------GCAACACCACCAGCAGCAGCACCTCCAGGCCATTT---------------------------------ACGCGAAG-CCCC----------------------------AGCCC--CCTGCGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGC--------AGA-------------------------------------------------------------------GCA-----ATTGTTGATACAGAGGC-----AC---ACACCC------ACGGCTACGTGCTGGCCACCACTAGCAG-----------------------------------------CAACACAAACGAAATCAGCA------------GCGGGAGCCGCAGCAGCAGCTCATCCTCG------------------------------------GGCCACTGTTCGC------------------------------CGCTCCTGGGTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AC---------------------------------------------------------------------------------------------------------------G---AGGAGC------ACGGCTACGTTCTGGCCACCAACAGCAG-----------------------------------------C------------AGCAGTAGCAGCCACCGCCGCCGTAGCCGGAACAGAAGTTCCGCCGACAGC---------------------------------AGCGACGGCTCGC------------------------------CCCCCCTGGGCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGT--------AT---------------------------------------------------------------------------------------------------T---CCCCTT------ACAGCTCCGTTCTGGGCCCAAGCAGCCA-----------------------------------------C------------A---GCT------------TCCGTAGCCAGAGCAGCAGTTCCAACGACAGC---------------------------------AGCT------TG------------------------------------CCTACAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGG-----------------------------------------------------------------------------------------------------C-GAACTGGATTCCCTTT------ACGGCTTCGTTCTGGCCACCAGCAGCCA-----------------------------------------C------------C------------------GCCGCAGCCACAGCAGGAGTTCTGCTGGCAGC---------------------------------AGC------TCGC------------------------------C------CACCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CATT-----AAC----------------------------------------------------------------------ACG-----G-----AATCCAA-ATA-----CG---TGGCCA------ACGGCAACGTTCTGGCCACCACCAGTAA-----------------------------------------A------------AACAGCAGCAGCAACGTCCGCCGCAGCCGGAGCAGCAGTTCCGTCGAGAGC---------------------------------TGCGACGGTTCTT------------------------------CGCTCCTAGTTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGA-------------------------------------------------------------------------------------------------------------------AGCAC------TCAGCTGCGCTCTGGCCAGACAAAA-AA----A------------------------------------A---------A-AATC---AGCCATTACTCCCGCCGCAGCCATAGCGCCAGTTCTATCGATAGC---------------------------------TGCAACGG---------------------------------------CATTCACG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAAA---TTAAC------------------------------------------------------------------------------------AATTCAAAGCC-----CA---AGACAA------ACGGCAGCGTTCTGGCCACCACCAGACA-----------------------------------------A------------AATAGTG------------GCAGCACCCGGAGCAGCAGCTCCGCCGATAGC---------------------------------TGTGACGGTATAT------------------------------CGCTCCTCGGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........AC------------------------------------------------------------------------------------AATTCAAAGCC-----CA---AGACAA------ACGG.........................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GCAGCAGCTCCGCCGATAGC---------------------------------T......................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTCTGGCCACCACCAGACA-----------------------------------------A------------AATAGTG------------........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GGCAGCGTTCTGGCCACCACCAG....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CC-----CA---AGACAA------ACGGCAGCGTTCTGG..............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGCTCCGCCGATAGC---------------------------------TGTGACGGT..............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................CCGCCGATAGC---------------------------------TGTGACGG...............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGTG------------GCAGCACCCGGAGCAGC.......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCCGCCGATAGC---------------------------------TGTGAC.................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AGCC-----CA---AGACAA------ACGGCAGCGTTCT................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ACGGTATAT------------------------------CGCTCCTCGGCC	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CAGCAGCTCCGCCGATAGC---------------------------------TGT....................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GACA-----------------------------------------A------------AATAGTG------------GCAGCACCCGGA............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATAGTG------------GCAGCACCCGGAGC..........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ACCCGGAGCAGCAGCTCCGCCGAA...........................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGTGTAATTAGCA-GTCTCCCCTATATTCGATTGAGA-----------CCTGCATGAAAGAAATGTTTTATTCTCCATGATCTTAGGGAG---------AAC-CGCG------G---GGAATG------CAGGCAGCGTTCTGGCCACCACCAGAAA-----------------------------------------A------------AACAGTG------------GCAGCACCCGGAGCAGCAGCTCCGCCGATAGC---------------------------------TGTGACGGTTTAT------------------------------CGCTCCTCGGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................GCTCCGCCGATAGC---------------------------------TGTGACGGTT.............................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATTA------AC------------------------------------------------------------------------------------AATTCAAAGCC-----CA---AGACAA------ACGGCAGCGTTCTGGCCACCACCAGAAA-----------------------------------------A------------AACAGTG------------GCAGCACCCGGAGCAGCAGCTCCGCCGATAGC---------------------------------TGTGACGGTTTAT------------------------------CGCTCCTCGGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................GCTCCGCCGATAGC---------------------------------TGTGACGGT..............................................	23	1	1.00	1	0	0	1	0
.....................................................................................................AAAGCC-----CA---AGACAA------ACGGCAGCGTT..................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0

droYak3

GAAA---TTAAC------------------------------------------------------------------------------------AATTCAAAACC-----CA---AGGGAA------ACGGCAGAACTCTGGCCACCACCAGCCA-----------------------------------------A------------AACAGTA------------GCAGCACCCGGGGCAGCAGTTCCGTCGATAGT---------------------------------TGTGACGGTTTAT------------------------------CACTTCTAGGCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................A------ACGGCAGAACTCTGGCCACCACC......................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGTTCCGTCGATAGT---------------------------------TGT....................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTTCCGTCGATAGT---------------------------------TGTGAC.................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................A------------GCAGCACCCGGGGCAGCAGTTCCGT...............................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGTA------------GCAGCACCCGGGGC..........................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................C-----CA---AGGGAA------ACGGCAGAACTCTGGC.............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AAAACC-----CA---AGGGAA------ACGGCA.......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GCAGTTCCGTCGATAGT---------------------------------TGT....................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CAGCCA-----------------------------------------A------------AACAGTA------------GCAGC...................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GCAGTTCCGTCGATAGT---------------------------------TGTGAC.................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................CAGCAGTTCCGTCGATAGT---------------------------------TGTGACG................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AATT-----AAC------------------------------------------------------------------------------------AATTCACAACT-----TA---AGACAA------ACGGCAAAGCTCTGGCCACCACCAGCAA-----------------------------------------A------------AACAGTA------------GCATCAACCGGAGCAGCAGTTCCGCCGATAGC---------------------------------TGTGACGGTTTAT------------------------------TGCTTCTCGGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................CACAACT-----TA---AGACAA------ACGGC........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................ACGGCAAAGCTCTGGCCACCAC.......................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATCAACCGGAGCAGCAGTTC..................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................AGTTCCGCCGATAGC---------------------------------TGTGACGGT..............................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGTA------------GCATCAACCGGAGCAGCAGTTCC.................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................GCAA-----------------------------------------A------------AACAGTA------------GCATCAACCGGAGC..........................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................CGCCGATAGC---------------------------------TGTGACGGT..............................................	19	1	1.00	1	0	0	1	0	0	0	0

-13.9	-13.6	-13.4	-13.3

dps_1731

4_group5:1859195-1859278 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads