ID:

dps_1720

 Coordinate:

4_group5:979804-979954 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.4

Flybase annnotation

tRNA [Dpse\tRNA:GA29676-RA]; exon [Dpse\tRNA:GA29676:1]; exon [dpse_GLEANR_7438:1]; CDS [Dpse\GA21673-cds]; intron [Dpse\GA21673-in]

No Repeatable elements found

mature
  1. dps_1720  4_group5:979937-979954 +
  2. 4_group5:979987-980004 +
  3. 4_group5:984710-984727 -
  4. 4_group5:1012363-1012380 -
  5. 4_group5:1019899-1019916 +
  6. 4_group5:1020751-1020768 -
  7. 4_group5:1054896-1054913 -
  8. dps_3516  4_group5:1143046-1143063 +
  9. 2:23806644-23806661 +
  10. XL_group3a:481020-481037 -
  11. 4_group3:7029645-7029662 +
  12. 4_group3:7029977-7029994 +
  13. 4_group3:7032135-7032152 -
  14. 4_group3:7032584-7032601 -
  15. 4_group3:7033047-7033064 -
  16. Unknown_singleton_1264:1672-1689 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################
AAATAATGCAATTCCTCGATGTGCCATACGGAAAGGCAGATCGCTTCAAGGTGAGTTCATATTTGTTCTTGTTCCAGTTTCTATTCCAAAGGTCAAGGAACTCAAATTCAAAAATATGTTCAAGAAGAATTTCTCTGCTTAAAATTGGTTCCTTATTTTTATATCTTGGCCCTACTGTCAGAGTCCTCGATAGTATAGTGGTAAAATAGCAGTTTGACGGCAGAAGAAGAAAATCCTCGATAGTATAGTGG
*************************************************************************************************************************************************************...........((..(((((((((....)).)))))))..))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 SRR902011
testis
 M059
embryo
 GSM444067
head
 SRR902012
CNS imaginal disc
 SRR902010
ovaries
 M062
head
 M022
male body
.......................................................................................................................................................................................TCCTCGATAGTATAGTGG.................................................. 18 0 16 19.50 312 266 0 4 16 10 1 9 3 2 1
.........................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG 18 0 16 19.50 312 266 0 4 16 10 1 9 3 2 1
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGCAGTA............................................. 23 3 1 8.00 8 0 8 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGT................................................. 19 0 16 6.44 103 64 13 9 2 3 9 1 2 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGCAGT.............................................. 22 3 2 2.50 5 0 5 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGCAGTAT............................................ 24 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGTA................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGACAGTATAGTGGTA................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................TTTATATCTTGGCCCTACTGT......................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGTTAAGTA........................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAAATCCTCGATAGTATAGTG. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGTCAAGTAT.......................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GAAGTATAGTGGTATAATAGCA........................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGAAACGTA........................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGTCAAGTA........................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGCAG............................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAATCCTCGATAGTATAGTGG 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTTTATATCTTGGCCCTAC............................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................TTTTATATCTTGGCCCTACTGT......................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................TCGATAGTATAGTGGTAAA.............................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGAA................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................AACTCCTCGATAGTATAGTG. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTG................................................... 17 0 16 0.63 10 0 0 0 5 0 0 1 4 0 0
.........................................................................................................................................................................................................................................TCCTCGATAGTATAGTG. 17 0 16 0.63 10 0 0 0 5 0 0 1 4 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTAAAAA............................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGAACC.............................................. 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT 18 1 16 0.50 8 0 0 7 0 1 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGT.................................................. 18 1 16 0.50 8 0 0 7 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................GCGGAAGCAGAAAATCCTCG............ 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................CCTCGATAGTATAGTGGT................................................. 18 0 16 0.38 6 6 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CATTCCTCGATAGTATAGTGGT................................................. 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGG................................................. 19 1 16 0.31 5 3 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATAGTTTAGTGGTAAAAC............................................ 18 2 7 0.29 2 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................GTCCTCGATAGTATAGTGG.................................................. 19 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GTCCTCGATAGTATAGTG................................................... 18 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGTCAA.............................................. 22 1 13 0.23 3 2 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................CTCTTTAGTTTAGTGGTAAAA............................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCTCGATAGTATAG... 15 0 16 0.19 3 0 0 0 0 0 0 0 3 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGC................................................. 19 1 16 0.19 3 0 0 2 0 0 0 0 0 1 0
.......................................................................................................................................................................................TCCTCGATAGTATAG..................................................... 15 0 16 0.19 3 0 0 0 0 0 0 0 3 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGTG................................................. 19 2 17 0.18 3 1 0 1 0 0 0 0 0 1 0
......................................................................................................................................................................................GGCCTCGATAGTATAGTGGTT................................................ 21 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................ATATCTGTTCAAGAAGAAT......................................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGAATAGTGGT................................................. 19 1 16 0.13 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTAGATAGTATAGTGGT................................................. 19 1 16 0.13 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTTGATAGTATAGTGGT................................................. 19 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGAA................................................. 19 2 18 0.11 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTGGTTCCTCGATAGTATA...................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTAAA................................................. 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAGTTTAGTGGTAAAATT........................................... 18 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CCTCGATAGTATAGTGGTCAA.............................................. 21 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGTCGTA............................................. 23 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................AAATCATAGATGGTATAGTG. 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCTCGATAGTATAGT.. 16 0 16 0.06 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................TCCCCGATAGTATAGTGG 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGGTAGTATAGTGG.................................................. 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGGA................................................. 19 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTAGATAGTACAGTGGT................................................. 19 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGGATAGTGGT................................................. 19 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGT.................................................... 16 0 16 0.06 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGCGGT................................................. 19 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTAG.................................................. 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGTTAGTATAGTGGT................................................. 19 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTGTAGTGGG................................................. 19 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGGTAGTATAGTGGT................................................. 19 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTCG.................................................. 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GCCTCGATAGTATAGTGGT................................................. 19 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCTCGGTAGTATAGTGG 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCTCGATAGTATAGTCG 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCTCGATAGTATAGTAG 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAATATAGTGGT................................................. 19 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCCCGATAGTATAGTGGT................................................. 19 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCCCGATAGTATAGTGG.................................................. 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TACTCGATAGTATAGTGGG................................................. 19 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTTTAGTGTT................................................. 19 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGGTTGTATAGTGGT................................................. 19 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAATCGATAGTATAGTGGT................................................. 19 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................CCTCCATAGTATAGTGGG................................................. 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGTC................................................. 19 2 17 0.06 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................GCCTCGATAGTATAGAGGT................................................. 19 2 17 0.06 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TACTCGATAGTATAGTGTT................................................. 19 2 17 0.06 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTATAGTGCG................................................. 19 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATAGGATAGTGATAAAGTA........................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................CTATGCTGAAAATTGGTGC.................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TACGCGATAGTATAGGGGT................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTTGGTAGTATAGGGGT................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCCTCGATAGTGTAGTGAG................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TCCTCGCTAGTGTAGGGGT................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TTTATTACGTTAAGGAGCTACACGGTATGCCTTTCCGTCTAGCGAAGTTCCACTCAAGTATAAACAAGAACAAGGTCAAAGATAAGGTTTCCAGTTCCTTGAGTTTAAGTTTTTATACAAGTTCTTCTTAAAGAGACGAATTTTAACCAAGGAATAAAAATATAGAACCGGGATGACAGTCTCAGGAGCTATCATATCACCATTTTATCGTCAAACTGCCGTCTTCTTCTTTTAGGAGCTATCATATCACC
**************************************************...........((..(((((((((....)).)))))))..))..************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
 M059
embryo
 GSM343916
embryo
......................................................CAGGTATAAACAAGAGGAAGGT............................................................................................................................................................................... 22 3 1 2.00 2 0 2 0 0
...............................................................................................................................TTAAAGAGAGGAATTTTAACCG...................................................................................................... 22 2 1 1.00 1 1 0 0 0
.................................................................................................................................AAAGAGACGAATTTTAACCAAGGAAT................................................................................................ 26 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................TTTTAACGTCAAACTGCAGT............................. 20 2 3 0.33 1 0 0 1 0
.....................................................................................................................................................................................CCAGGAGCTATCATATCACC.................................................. 20 1 4 0.25 1 1 0 0 0
.....................................................................GCCAGGTCAAAGAGAAGGTT.................................................................................................................................................................. 20 3 10 0.10 1 1 0 0 0
.....................................................................ACAAGGTCAAAGGAAAGGT................................................................................................................................................................... 19 2 14 0.07 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group5:979754-980004 + dps_1720 AAATA--ATGCAATTCCTCGATGTGCCATACGGAAAGGCAGATCGCTTCAAGGTGAGTTCATATTTGTTCTTGTTCCAGTTTCTATTCCAAAGGTCAAGGAACTCAAATTCAAAA---ATA--------------------------------------------------------TGTTCAA---------------------------------GAAGAA-------------------------TTTCTCTGCTTAAAATTGGTTCC---TTATTTTTATATCTT---GGCCCTACTGTCAGAGTCCTCGATAGTATAGTGGTAAAATAGCAGTTTGACGGCAGAAGAAGAAAATCCTCGATAGTATAGTGG
droPer2 scaffold_5:5385099-5385348 + AAATA--AGCCAATTCCTCGATGTGCCATACGGAAAGGCAGATCGCTTCAAGGTGAGTTCATATTTCTTCTTGTTCCAGTTTCTAT-CCAAGGGTCAAGGAACTCAAATTCAAAA---ATA--------------------------------------------------------TGTTCAA---------------------------------GAAGAA-------------------------TTTCTCTGCTTAAGATTGGTTCC---TTATTTTTATATCTT---GGCCCTAGTGTCAGAGTCCTCGATAGTATAGTGGTAAAATAGCAGTTTGACGGCAGAAGAAGCAAATCCTCGATAGTATAGTGG
droWil2 scf2_1100000004884:1120091-1120149 - CAATT--ATGCAGTTCCTGGATGTGCCCTATGGATCGGCAGATCGCTTCAAGGTAAAT-----------------------------------------------TCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:5637321-5637375 + AAGTT--ATGCAGTTTCTAGATATCCCGTATGGCAAAGCCGAGCGTTTTAAGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:23190701-23190882 - ACCAATTTAATAAAACTT-GATATTTTCTTTT----------------------------------------GATTCAGTTAATAA-TCAAATTTTAAGAAGCTATAGTTGTAAG---ATC---G-TCAGATC---------------------------------------------------------------------------------------------------------TATTTTGTAATA-------------TCCATATA---TTAACTACATTTATA---GTCCCTAGGTTCATAG---------------------GCCAAAGTTTGGACGCCTTCCGCAAGAAAGCATCGGTGGTTCAGTGG
droGri2 scaffold_15252:9348327-9348387 - GAACT--CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTA----------ATATTTAGCATTTGGCCAGCAGAATTCAACATCCTCGATAGTATAGTGG
droAna3 scaffold_12916:10330561-10330671 - AGATA--AAGCAATTCCTCGACATCCCCTATGGAAAGGCGGACCGATTCAAGGTGAGT-----------------------------------------------TTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTCAAAATAGGCGCTCGTCCATCACCGTCCTCGATAGTATAGTGG
droBip1 scf7180000396572:3591-3701 - AGATA--AAGCAGTTCCTCGACATCCCCTATGGAAAGGCAGAGCGATTCAAGGTGAGT-----------------------------------------------TAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----------TTGTTTCAAAACGAGCGCCCGTTCGTCACCGTCCTCGATAGTATAGTGG
droKik1 scf7180000302412:828507-828727 - AGATA--ATGCAGTTCCTCGATATTCCCTACGGAAAGGCTGATCGATTCAAGGTGGGT-----------------------------------------------TCGTGTTATCATTTTT---AATGTGATTCGCTTGGTACATCATTTATTTATTAAG----CCAAAAGAT--------------------------ACTTTTATTTT-GAGCA--AAGAG-------------------------TA-------------TCT--TTGCT-TT---GATAAATCAA---CTGAATT-------------GCCTC----------CTACCCCGCATTTGTCGCTTCTTAACCAACATCCTCGATAGTATAGTGG
droFic1 scf7180000454102:358174-358364 + GGATA--ATGCAGTTTTTAGATATTCCATACGGAAAAGCCGAGCGCTTCAAGGTGAGC-----------------------------------------------TAATATGTATAT---T---A----------ATTTTGTTC----------------ATAAAT-----------------------ATATTAT-TGCATTCCATATTCCTTTGG-----TTATAC-----------------------------------------AAACGTT---GGTC-----A---GCCACTT-------------AACAC----------TTGTTTACCATTTGGCCAACGTCGTTCACCGTCCTCGATAGTATAGTGG
droEle1 scf7180000491186:1514197-1514377 - GGATA--ATGCAGTTCCTAGACATACCCTATGGCAAAGCCGAGCGATTTAAGGTGAGT-----------------------------------------------AAATATAATAAT---C---A-TAAA----------------------------------ATATAGGCT----------------------T-TGCATTCTATTAT-CTTTG------GT----------------------------------------------AAGGTT---AGACAACATG---GCGTCTT-------------GTGGC----------TTGTTTGTTATTTGACCTCCGTCGTTCACCGTTCTCGATAGTATAGTGG
droRho1 scf7180000779312:165535-165738 + AGATA--ATGCAGTTCTTAGACATTCCCTATGGTAAAGCGGAGCGATTTAAGGTGAGT-----------------------------------------------AGTTATTTTCAT---C---A-TAAA----------------------------------ATATGGGTAACAT--CAAAGAAAGAATTTTAT-TGCATTCTTTTAT-TATTG------GC----------------------------------------------AACGCT---ATTCAAAGTGAAAACGTATT-------------CTCTC----------TTGTTTGTTATTTGACATGCGTCAACCACCGTCCTCGATAGTATAGTGG
droBia1 scf7180000301518:1097078-1097139 + AGATA--ATACAGTTCTTAGACATACCGTACGGAAAAGCGGAACGATTTAAGGTTAGT-----------------------------------------------ACATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000410803:53936-54118 - AGATA--ATGCAGTTCCTAGACATTCCCTATGGAAAAGCCGAGAGATTTAAGGTAGGT-----------------------------------------------TACTATTGACAT---C---A-CAGG----------------------------------TAATAGAAT--------------------------CATTTTATTCT-CAGTG------GTACAC-----------------------------------------GAACGTT---GGCCAACTCA---TCCCCTT-------------GTGGC----------TTATTTGTTATTTGACCTGCGTCGCTCACCGTCCTCGATAGTATAGTGG
droEug1 scf7180000409554:831289-831478 + AAATA--ATGCAGTTCCTGGACATTCCATATGGCAAAGCAGAAAGATTTAAGGTGCGT-----------------------------------------------TATTCTTATTAT---CGTCA-AAGA----------------------------------TTTTAGATT----------------------TTTCTATGTTATCAT-CTTCG------GCATAC-----------------------------------------AAACGTT---TACCGACATT---GTCTCTA-------------GTGGC----------TTGTTTATTATTTGGCAATCGTTGCTCGTCGTCCTCGATAGTATAGTGG
dm3 chr2L:8683860-8684055 - AGATA--ATGCAGTTCTTGGACATTCCCTACGGCAAAGCAGAGCGATTCAGGGTGAGT-----------------------------------------------TAATATTGTTATTATC---G-CAAGATT-AATAGGTACAT---------------------------------------------------------------------------------G-CATTTCTTACTATTTTTTGAGA-------------CCT--TTGATGTT---GGTAAATTTA---ACCACTC-------------ATAAC----------TTGTATTATATTTGACTCAAAAGTATCAACGTCCTCGATAGTATAGTGG
droSim2 2l:8397090-8397285 - AGATA--ATGCAGTTCCTGGACATTCCCTACGGCAAAGCAGAGCGATTCAGGGTGAGT-----------------------------------------------ATATATTGTTATTATC---G-CAAGATT-AATAAGTACAT---------------------------------------------------------------------------------A-CATTACCTACTATTTTTTGATA-------------CCT--TTGATGTT---GGTAAATTCA---ACCACTT-------------ATAAC----------TTGTTTTTTATTTGACTCACGTTGCTCAACATCCTCGATAGTATAGTGG
droSec2 scaffold_3:4164242-4164435 - AGATA--ATGCAGTTCCTGGACATTCCCTACGGCA-AGCAGAGCGATTCAGGGTGAGT-----------------------------------------------ATATATTGTTACTATC---G-CAAGATT-AATAAGTACAT---------------------------------------------------------------------------------A-CATTACCTACTATTTTTTGATA-------------CCT--TTGATGTT---GGTAAATTCA---GCCACTT-------------ATAAC----------TTGTTT-TTATTTGACTCACCTTGCTCAACATCCTCGATAGTATAGTGG
droYak3 2L:11331906-11332096 - AGATA--ATGCAGTTCCTGGACATTCCCTACGGCAAAGCAGAGCGATTCATGGTGAGT-----------------------------------------------TATTAGTATTATTATC---G-CAAG----------------------------------ATGTCGACA----------------------T------------------------------A-CATAGCTTACTACTTTCTCATA-------------CCT---AACCGTT---GGCCAATTCA---ACCACTT-------------AATGG----------TTGTTTATTATTTGACTAAGGTCGTCCACCGTCCTCGATAGTATAGTGG
droEre2 scaffold_4929:9275287-9275485 - AGATA--ATGCAGTTCCTGGACATTCCCTACGGCAAAGCAGAGCGATTTATGGTGAGT-----------------------------------------------TAATAGTTTTATAATC---G-CTATATT-AACAATGACAC---------------------------------------------------------------------------------ACCATAGCTTACTATTTTTTGATA-------------CTCACTTACTACT---GGCGAATTTA---CCCACTT-------------ATATC----------TTGTTTGATATTTGAGTTCCCTCGTTCACCGTCCTCGATAGTATAGTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAATA--ATGCAATTCCTCGATGTGCCATACGGAAAGGCAGATCGCTTCAAGGTGAGTTCATATTTGTTCTTGTTCCAGTTTCTATTCCAAAGGTCAAGGAACTCAAATTCAAAA---ATA--------------------------------------------------------TGTTCAA---------------------------------GAAGAA-------------------------TTTCTCTGCTTAAAATTGGTTCC---TTATTTTTATATCTT---GGCCCTACTGTCAGAGTCCTCGATAGTATAGTGGTAAAATAGCAGTTTGACGGCAGAAGAAGAAAATCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG..................................................181619.5031212661024103169
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG181619.5031212661024103169
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGT.................................................19166.44103064309913221
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGTA................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................TTTATATCTT---GGCCCTACTGT.........................................................................2111.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................AAAATCCTCGATAGTATAGTG.2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................AAATCCTCGATAGTATAGTGG2111.0010100000000
.....................................................................................................................................................................................................................................................................................TTTTTATATCTT---GGCCCTAC............................................................................2011.0010010000000
......................................................................................................................................................................................................................................................................................TTTTATATCTT---GGCCCTACTGT.........................................................................2211.0010000000001
.......................................................................................................................................................................................................................................................................................................................TCGATAGTATAGTGGTAAA..............................................1911.0010000010000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTG...................................................17160.63100000000451
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTG.17160.63100000000451
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18160.5080010700000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT..................................................18160.5080010700000
.....................................................................................................................................................................................................................................................................................................................CCTCGATAGTATAGTGGT.................................................18160.3860600000000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGG.................................................19160.3150300200000
...................................................................................................................................................................................................................................................................................................................GTCCTCGATAGTATAGTGG..................................................1940.2510100000000
...................................................................................................................................................................................................................................................................................................................GTCCTCGATAGTATAGTG...................................................1840.2510001000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAG...15160.1930000000300
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGC.................................................19160.1930001200000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAG.....................................................15160.1930000000300
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGTG.................................................19170.1830101100000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGAA.................................................19180.1120200000000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTAAA.................................................19200.1020200000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGT..16160.0610000000001
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGA.................................................19160.0610000100000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGT....................................................16160.0610000000001
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGTC.................................................19170.0610000010000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGCG.................................................19180.0610000100000
droPer2
AAATA--AGCCAATTCCTCGATGTGCCATACGGAAAGGCAGATCGCTTCAAGGTGAGTTCATATTTCTTCTTGTTCCAGTTTCTAT-CCAAGGGTCAAGGAACTCAAATTCAAAA---ATA--------------------------------------------------------TGTTCAA---------------------------------GAAGAA-------------------------TTTCTCTGCTTAAGATTGGTTCC---TTATTTTTATATCTT---GGCCCTAGTGTCAGAGTCCTCGATAGTATAGTGGTAAAATAGCAGTTTGACGGCAGAAGAAGCAAATCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGT.................................................19168.7514007031101415
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG18164.75760693220
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG..................................................18164.75760693220
.......................................................................................................................................................................................................................................................................................TTTATATCTT---GGCCCTAGTG..........................................................................2011.001000100
.......................................................................................................................................................................................................................................................................................TTTATATCTT---GGCCCTAGTGT.........................................................................2111.001000010
...................................................................................................................................................................................................................................................................................................................GTCCTCGATAGTATAGTGGT.................................................2030.672010001
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT..................................................18160.315004010
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18160.315004010
.....................................................................................................................................................................................................................................................................................................................CCTCGATAGTATAGTGGT.................................................18160.254040000
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGG.................................................19160.193020010
...................................................................................................................................................................................................................................................................................................................GTCCTCGATAGTATAGTGGTT................................................2160.171000010
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGGTG................................................20160.132010010
....................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGTC.................................................19180.061100000
droWil2
CAATT--ATGCAGTTCCTGGATGTGCCCTATGGATCGGCAGATCGCTTCAAGGTAAAT-----------------------------------------------TCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAGTT--ATGCAGTTTCTAGATATCCCGTATGGCAAAGCCGAGCGTTTTAAGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ACCAATTTAATAAAACTT-GATATTTTCTTTT----------------------------------------GATTCAGTTAATAA-TCAAATTTTAAGAAGCTATAGTTGTAAG---ATC---G-TCAGATC---------------------------------------------------------------------------------------------------------TATTTTGTAATA-------------TCCATATA---TTAACTACATTTATA---GTCCCTAGGTTCATAG---------------------GCCAAAGTTTGGACGCCTTCCGCAAGAAAGCATCGGTGGTTCAGTGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................GCATCGGTGGTTCAGTGG181468.3695774700117831
........................................................................................................ATAGTTGTAAG---ATC---G-TCAGATC---------------------------------------------------------------------------------------------------------TATTTT....................................................................................................................................2811.001000010
................................................................................................................................................................................................................................................................................................................................................................AAGAAAGCATCGGTGGTTCAGTGG2411.001000010
...................................................................................................................................................................................................................................................................................................................................................................AAAGCATCGGTGGTTCAGTG.2030.331000100
....................................................................................................................................................................................................................................................................................................................................................................AAGCATCGGTGGTTCAGTG.19100.303100011
....................................................................................................................................................................................................................................................................................................................................................................AAGCATCGGTGGTTCAGT..18100.303000111
......................................................................................................................................................................................................................................................................................................................................................................GCATCGGTGGTTCAGTGC18150.071000001
......................................................................................................................................................................................................................................................................................................................................................................GCATCGGTGGTTCAGTTC18170.061000010
droGri2
GAACT--CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTA----------ATATTTAGCATTTGGCCAGCAGAATTCAACATCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG1812230.672768274919
.....................................................................................................................................................................................................................................................................................................................................................................ATCCTCGATAGTATAGTGG1961.00660
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGT..2050.80422
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18120.50660
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGTGG2250.40211
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGTC.2150.20101
droAna3
AGATA--AAGCAATTCCTCGACATCCCCTATGGAAAGGCGGACCGATTCAAGGTGAGT-----------------------------------------------TTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTCAAAATAGGCGCTCGTCCATCACCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG181319.692561047272134
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18134.54597105001
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGA18130.152010001
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTG.17140.142000200
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTAT18150.132000002
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGT..16140.071000100
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTA18160.061000001
droBip1
AGATA--AAGCAGTTCCTCGACATCCCCTATGGAAAGGCAGAGCGATTCAAGGTGAGT-----------------------------------------------TAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----------TTGTTTCAAAACGAGCGCCCGTTCGTCACCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotal
No Reads
droKik1
AGATA--ATGCAGTTCCTCGATATTCCCTACGGAAAGGCTGATCGATTCAAGGTGGGT-----------------------------------------------TCGTGTTATCATTTTT---AATGTGATTCGCTTGGTACATCATTTATTTATTAAG----CCAAAAGAT--------------------------ACTTTTATTTT-GAGCA--AAGAG-------------------------TA-------------TCT--TTGCT-TT---GATAAATCAA---CTGAATT-------------GCCTC----------CTACCCCGCATTTGTCGCTTCTTAACCAACATCCTCGATAGTATAGTGGSizeHit CountTotal NormTotal
No Reads
droFic1
GGATA--ATGCAGTTTTTAGATATTCCATACGGAAAAGCCGAGCGCTTCAAGGTGAGC-----------------------------------------------TAATATGTATAT---T---A----------ATTTTGTTC----------------ATAAAT-----------------------ATATTAT-TGCATTCCATATTCCTTTGG-----TTATAC-----------------------------------------AAACGTT---GGTC-----A---GCCACTT-------------AACAC----------TTGTTTACCATTTGGCCAACGTCGTTCACCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotal
No Reads
droEle1
GGATA--ATGCAGTTCCTAGACATACCCTATGGCAAAGCCGAGCGATTTAAGGTGAGT-----------------------------------------------AAATATAATAAT---C---A-TAAA----------------------------------ATATAGGCT----------------------T-TGCATTCTATTAT-CTTTG------GT----------------------------------------------AAGGTT---AGACAACATG---GCGTCTT-------------GTGGC----------TTGTTTGTTATTTGACCTCCGTCGTTCACCGTTCTCGATAGTATAGTGGSizeHit CountTotal NormTotal
No Reads
droRho1
AGATA--ATGCAGTTCTTAGACATTCCCTATGGTAAAGCGGAGCGATTTAAGGTGAGT-----------------------------------------------AGTTATTTTCAT---C---A-TAAA----------------------------------ATATGGGTAACAT--CAAAGAAAGAATTTTAT-TGCATTCTTTTAT-TATTG------GC----------------------------------------------AACGCT---ATTCAAAGTGAAAACGTATT-------------CTCTC----------TTGTTTGTTATTTGACATGCGTCAACCACCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotal
No Reads
droBia1
AGATA--ATACAGTTCTTAGACATACCGTACGGAAAAGCGGAACGATTTAAGGTTAGT-----------------------------------------------ACATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGATA--ATGCAGTTCCTAGACATTCCCTATGGAAAAGCCGAGAGATTTAAGGTAGGT-----------------------------------------------TACTATTGACAT---C---A-CAGG----------------------------------TAATAGAAT--------------------------CATTTTATTCT-CAGTG------GTACAC-----------------------------------------GAACGTT---GGCCAACTCA---TCCCCTT-------------GTGGC----------TTATTTGTTATTTGACCTGCGTCGCTCACCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotal
No Reads
droEug1
AAATA--ATGCAGTTCCTGGACATTCCATATGGCAAAGCAGAAAGATTTAAGGTGCGT-----------------------------------------------TATTCTTATTAT---CGTCA-AAGA----------------------------------TTTTAGATT----------------------TTTCTATGTTATCAT-CTTCG------GCATAC-----------------------------------------AAACGTT---TACCGACATT---GTCTCTA-------------GTGGC----------TTGTTTATTATTTGGCAATCGTTGCTCGTCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotal
No Reads
dm3
AGATA--ATGCAGTTCTTGGACATTCCCTACGGCAAAGCAGAGCGATTCAGGGTGAGT-----------------------------------------------TAATATTGTTATTATC---G-CAAGATT-AATAGGTACAT---------------------------------------------------------------------------------G-CATTTCTTACTATTTTTTGAGA-------------CCT--TTGATGTT---GGTAAATTTA---ACCACTC-------------ATAAC----------TTGTATTATATTTGACTCAAAAGTATCAACGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG18147526.3610536900000000000000033521837002628211201000000000206367136102357224301529591708961336646000311700000000000000000161316131201509102615190130230012430438132000002072110301047120580161129572331724740303852071272962101532651201309271522200300071034151135259150862022371290420486326012289145306260720701854001132323002001191495604379805132911416341019151531011776715390000910480009124011512682121627101110194442015332113200101982374251519356687165180392316897037200027027712118671201700021021519351017545236711587
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAGT..204173.0069200000000000000000000000000500000000110202013001201110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100214510620000000400270000000001000000070100150000000001000002000000315511336184313254040000010100010002011111000120100004120018190008119401311229910101561175631018635211085181100451013151387913717155170
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT1814150.8621120000000000000000000001518040000000000016831515521037111611953235610000000000000000000000000200000120001411063002003823000010011000020010000000010300211653000004823001449202420000000000072200003000000000003001190106362543000160145000001113200000470108120180049330101200100006840010100000311205417200553331912010100000003012231031930781415427661419222500565082000000000200022712112420000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTG.1714109.50153300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001170290000000000000000000000000000000000000000000007000000000000000000000000000000000000000000004001527102723201421100011700100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAGTG.21450.502020000001000000000000000000010000000011000100000000003000001000000000000000000000000000020000000000000010000000000000000000000000000000000000001000000010000200020000000100100011000030030000000030000000000000001000000010000104130361200000010013020104000011000002010010321000020043100401247530001031618000010220200000000000100101311260
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAGTGG22449.5019800000000000000000000000000000000000102001000000100000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000001112001000000000000000200000000000011000100100000001001220111221113452530000000000020000000100000000000100001000020004910011031320001019010000042811241000411303201351270130
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAG...19426.2510500000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001051700000100000000000000006000201100000000000000000000161000010211100800500000000011100000001100120101212100201000010014000000100000002202000000130000001001000000000112000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGC181412.21171000000000000000000000010100000000000100000000003000100000000000000000000000000000000000102000000000000000000000000000000000000100133714500000420000000000000000000000000000000010001000000000000000000100000000000000100203000320000000011000000000000000001000200101010000000000000000000200000004000200000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGA18149.931390000000000000000011000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000002000000001000216353300000300000000000000000000000000010000021010000000000001000000000000000000000000203200210000000067000100000000000000010000101100001100000000000100000001001010200000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAGTGT2246.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000001000000400040000000102000000014000000000100100000000000001100010
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGATC18204.308600000000000000000000000000000000000000001000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000048000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000068000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAGTGA2244.00160000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000200000000000000000000000000000000000000000000000000000000000000110100000000000000000000000000000011001000000000100000000000000000001100000000001101000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CAACGTCCTCGATAGTATAGT..2143.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000300000000010000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTC18163.5657000000000000000001000000000000000000020000100006010000000000000000000000000000000000000000000000000000000000000000000000000000000000171200000000000010100000000000000000000000000000000000000010000000030000000000000000100000300000000000000001000000000000000000000000000000000000000000000000000010100001000200000000000000001000000000
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATA....1842.75110000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000300100000000000000000000000001100000001000000000000000000000000000000000000200000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGGTC18202.555100000000000000000000000000000000000000000000001500100000000000000000000000000000000000000000000000000000000000000000000000000000000091700000000000100000000000000000000000000000000000000000001100000000000030000000000001000400000000001000001000000000000000000000100000000000000000000000000000000100000000201000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTT18202.505000000000000000000000000000000000000001010000010300010000000000000000000000000000000000000000000000000000000000000000000000000006021019400000000000000000000000000000000000000000001000000000010000000000000020000000001000000000000000000000000000000000000000000000000000000000000000000120000000000010000000020000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CGTCCTCGATAGTATAGTGG2052.40120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................TATTTTTTGAGA-------------CCT--TTGAT.......................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGGAC18201.9038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTCCTCGATAGTATAGTGG1971.86130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000101000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000200100200000000100000000000000000000100100
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAGTT.2141.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000300000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................ACGTCCTCGATAGTATAGTGG2141.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000010000000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGT..16141.502100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021
...................................................................................................................................................................................................................................................................................................................................................................ACGTCCTCGATAGTATAGT..1941.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000021000010000000000000000000000000000
.............................................ATTCAGGGTGAGT-----------------------------------------------TAATATTG.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................GTACAT---------------------------------------------------------------------------------G-CATTTCTTACTATTTTTT..................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CTATTTTTTGAGA-------------CCT--TTGATG......................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................AGATT-AATAGGTACAT---------------------------------------------------------------------------------G-CATTTCT.............................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................GATTCAGGGTGAGT-----------------------------------------------TAATATTGTTAT...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTTTTTGAGA-------------CCT--TTGAT.......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................GGCAAAGCAGAGCGATTCAGG....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATCAACGTCCTCGATAGTATAG...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTTTTTGAGA-------------CCT--TTGATG......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................TCTTACTATTTTTTGAGA-------------CCT--TTGA........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................ATTCAGGGTGAGT-----------------------------------------------TAATATTGTTA....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TATTTTTTGAGA-------------CCT--TTGATG......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................GACTCAAAAGTATCAACG..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTCT18170.941600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CGTCCTCGATAGTATAGTG.1950.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CCTCGATAGTATAGTGG17140.79110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000010102200200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAG...15140.791100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAA...1940.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AACGTCCTCGATAGTATAGTA.2140.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTA18140.6490000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000100000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000200000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGGCT18200.60120000000000000000000000000000000000000210000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000100000100000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CGTCCTCGATAGTATAGT..1850.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTAT18170.59100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTCCTCGATAGTATAGTGT1970.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTCCTCGATAGTATAGTG.1870.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000100000000000000000000000000000000000000000
droSim2
AGATA--ATGCAGTTCCTGGACATTCCCTACGGCAAAGCAGAGCGATTCAGGGTGAGT-----------------------------------------------ATATATTGTTATTATC---G-CAAGATT-AATAAGTACAT---------------------------------------------------------------------------------A-CATTACCTACTATTTTTTGATA-------------CCT--TTGATGTT---GGTAAATTCA---ACCACTT-------------ATAAC----------TTGTTTTTTATTTGACTCACGTTGCTCAACATCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG1815328.13492250118226018501341016743101000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTG.171532.074810000003333469000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGT..161523.40351000000211267305000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAG...151517.00255000000171167213001000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTC18163.31531004300000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18153.2749001000200039700000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGG..16161.3121000000221115000000
.............TTCCTGGACATTCCCTAC.........................................................................................................................................................................................................................................................................................................................................................1821.00200000200000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCGATAGTATAGTGG15160.9415000000210012000000
........................................................................................................................................................................................................................................................................................................................................................................CTCGATAGTATAGTGG16160.8814000000040010000000
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAG...1980.88700006010000000000
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGTG.2180.75600006000000000000
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGTGG2280.75600000012003000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGA..16180.561000000034210000000
........................................................................................................................................................................................................................................................................................................................................................................CTCGATAGTATAGTG.15160.25400000000004000000
...................................................................................................................................................................................................................................................................................................................................................................ACATCCTCGATAGTATAGT..1980.25200000002000000000
...................................................................................................................................................................................................................................................................................................................................................................ACATCCTCGATAGTATAGTGG2180.25200000001001000000
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGT..2080.25200000000002000000
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATA....1880.25200000001010000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAA...15180.22400000001011010000
.......................................................................................................................................................................................................................................................................................................................................................................CCTCGATAGTATAGT..15150.20300000010002000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGC18150.20300100000002000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAAA..16200.15300000000300000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGGCT18200.15310000000002000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGGT.17200.15300000000003000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGA18150.13200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGC..16150.13200000000002000000
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGT.......1580.13100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................ATCCTCGATAGTATAGT..1780.13100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................ACATCCTCGATAGTATA....1780.13100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTA.17170.12200000001010000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTC.17150.07100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................CCTCGATAGTATAGTG.16150.07100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................CCTCGATAGTATAGTGG17150.07100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTA18180.06100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTAT18180.06100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTT18190.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGGTC18200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGCTT18200.05100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................CTCGATAGTATAGTT.15200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGGCC18200.05110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGCA.17200.05100000000001000000
droSec2
AGATA--ATGCAGTTCCTGGACATTCCCTACGGCA-AGCAGAGCGATTCAGGGTGAGT-----------------------------------------------ATATATTGTTACTATC---G-CAAGATT-AATAAGTACAT---------------------------------------------------------------------------------A-CATTACCTACTATTTTTTGATA-------------CCT--TTGATGTT---GGTAAATTCA---GCCACTT-------------ATAAC----------TTGTTT-TTATTTGACTCACCTTGCTCAACATCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG181693.69149912001262117
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18168.941433011624
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGT..2091.33122271
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAGTGG2291.0090072
...................................................................................................................................................................................................................................................................................................................................................................ACATCCTCGATAGTATAGTGG2190.3331002
.....................................................................................................................................................................................................................................................................................................................................................................ATCCTCGATAGTATAGTGG1990.2221010
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATAG...1990.2220020
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTAT18200.2040004
..................................................................................................................................................................................................................................................................................................................................................................AACATCCTCGATAGTATA....1890.1110010
...................................................................................................................................................................................................................................................................................................................................................................ACATCCTCGATAGTATAGTG.2090.1111000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTT18190.0510001
droYak3
AGATA--ATGCAGTTCCTGGACATTCCCTACGGCAAAGCAGAGCGATTCATGGTGAGT-----------------------------------------------TATTAGTATTATTATC---G-CAAG----------------------------------ATGTCGACA----------------------T------------------------------A-CATAGCTTACTACTTTCTCATA-------------CCT---AACCGTT---GGCCAATTCA---ACCACTT-------------AATGG----------TTGTTTATTATTTGACTAAGGTCGTCCACCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG181512.5318801513221110000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18150.53801061000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGC18150.13200200000000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTC18170.12220000000000
droEre2
AGATA--ATGCAGTTCCTGGACATTCCCTACGGCAAAGCAGAGCGATTTATGGTGAGT-----------------------------------------------TAATAGTTTTATAATC---G-CTATATT-AACAATGACAC---------------------------------------------------------------------------------ACCATAGCTTACTATTTTTTGATA-------------CTCACTTACTACT---GGCGAATTTA---CCCACTT-------------ATATC----------TTGTTTGATATTTGAGTTCCCTCGTTCACCGTCCTCGATAGTATAGTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGG181355.157175071727301540
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGT18132.4632900101120
..................................................................................................................................................................................................................................................................................................................................................................ACCGTCCTCGATAGTATAGT..2031.0031000200
..................................................................................................................................................................................................................................................................................................................................................................ACCGTCCTCGATAGTATAGTTT2230.3311000000
..................................................................................................................................................................................................................................................................................................................................................................ACCGTCCTCGATAGTATAGTGG2230.3310000010
................................................................................................................................................................................................................................................................................................................................................................TCACCGTCCTCGATAGTATAGTGG2430.3311000000
..................................................................................................................................................................................................................................................................................................................................................................ACCGTCCTCGATAGTATAG...1930.3310001000
..................................................................................................................................................................................................................................................................................................................................................................ACCGTCCTCGATAGTATAGTG.2130.3310000010
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGC18130.2330100020
....................................................................................................................................................................................................................................................................................................................................................................CGTCCTCGATAGTATAGG..1850.2010001000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTGA18130.1521001000
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTAT18160.1320000110
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGTTA18170.0610000010
......................................................................................................................................................................................................................................................................................................................................................................TCCTCGATAGTATAGAAC18200.0510100000

Generated: 05/18/2015 at 01:21 AM