ID:

dps_17

 Coordinate:

4_group3:2085498-2085561 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.2 -18.8 -18.8

Flybase annnotation

intron [Dpse\GA16466-in]

No Repeatable elements found

mature
  1. 4_group3:2075815-2075835 -
  2. dps_17  4_group3:2085498-2085518 +
  3. 4_group3:2100827-2100847 +
star

Sense Strand Reads

TGGCGGAATAATGTGCCATTGGAATTCTTCGAAGCTATTGATTTCCATCGAATGGGTGGATGAAGAGTGTCGACATTGGTTCTACTCCCGCGCCGCCGTTCCCATCGCACGCCATGGATCCCGCTCTCCAACAAGGGGAATGGGTTCAACGCAAAGGATGTCCT
***********************************....((..........(((((((((.(((..(((.((.....(((...)))....)).)))..)))...)).))).))))...........))************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 GSM444067
head
 M062
head
 M022
male body		 SRR902012
CNS imaginal disc
 GSM343916
embryo
..................................................AATGGGTGGATGAAGAGTGTC............................................................................................. 21 0 3 300.33 901 569 298 11 13 3 6 1 0
.................................................................................................................ATGGATCCCGCTCTCCAACAA.............................. 21 0 1 49.00 49 46 2 1 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGCG........................................................................ 21 0 2 38.50 77 21 25 22 8 1 0 0 0
.......................................................................GACATTGGTTCTACTCCCG.......................................................................... 19 0 2 22.50 45 5 2 34 1 3 0 0 0
............................................................................................CCGCCGTTCCCATCGCACGCC................................................... 21 0 1 15.00 15 4 5 4 1 1 0 0 0
..................................................AATGGGTGGATGAAGAGTG............................................................................................... 19 0 3 12.67 38 10 28 0 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGT......................................................................... 20 1 2 9.50 19 3 12 3 1 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGC......................................................................... 20 0 2 8.50 17 5 0 8 0 4 0 0 0
.......................................................................GACATTGGTTCTACTCCCGCGT....................................................................... 22 1 2 8.00 16 1 15 0 0 0 0 0 0
.................................................................................................................ATGGATCCCGCTCTCCAAC................................ 19 0 1 8.00 8 3 0 4 0 1 0 0 0
..................................................AATGGGTGGATGAAGAGTGT.............................................................................................. 20 0 3 7.67 23 8 13 1 1 0 0 0 0
.......................................................................................................................................GGGAATGGGTTCAACGCAAAGG....... 22 0 1 6.00 6 6 0 0 0 0 0 0 0
.......................................................................................................................................GGGAATGGGTTCAACGCAAAG........ 21 0 1 5.00 5 5 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAG................................................................................................. 17 0 3 4.67 14 14 0 0 0 0 0 0 0
........................................................................................................................................GGAATGGGTTCAACGCAAAGG....... 21 0 1 4.00 4 4 0 0 0 0 0 0 0
............................................................................................CCGCCGTTCCCATCGTACGCC................................................... 21 1 1 4.00 4 0 1 1 1 1 0 0 0
.................................................................................................................ATGGATCCCGCTCTCCAACAAA............................. 22 1 1 4.00 4 4 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCG............................................................................................ 22 0 3 3.67 11 5 5 1 0 0 0 0 0
............................................................................................CCGCCGTTCCCATCGCACGC.................................................... 20 0 1 3.00 3 2 0 0 0 1 0 0 0
......................................................................................................................................GGGGAATGGGTTCAACGCAAAG........ 22 0 1 3.00 3 2 0 1 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGGGTC............................................................................................. 21 1 3 3.00 9 9 0 0 0 0 0 0 0
........................................................................ACATTGGTTCTACTCCCGCG........................................................................ 20 0 2 2.50 5 2 1 0 2 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGCGTT...................................................................... 23 2 2 2.50 5 2 3 0 0 0 0 0 0
......................................................................CGACATTGGTTCTACTCCCG.......................................................................... 20 0 2 2.50 5 1 1 1 1 1 0 0 0
............................................................TGAAGAGTGTCGACATTGG..................................................................................... 19 0 3 2.33 7 6 0 0 1 0 0 0 0
.................................................................................................................ATGGATCCCGCTCTCCAACAAAAA........................... 24 3 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................................GGGGAATGGGTTCAACGCAT.......... 20 1 1 2.00 2 2 0 0 0 0 0 0 0
............................................................................................CCGCCGTTCCCATCGTACG..................................................... 19 1 1 2.00 2 0 1 1 0 0 0 0 0
.....................................................................................................................................AGGGGAATGGGTTCAACGCA........... 20 0 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................................ATGGATCCCGCTCTCCAACA............................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................TGGATCCCGCTCTCCAACAAG............................. 21 0 1 2.00 2 1 0 1 0 0 0 0 0
.................................................................................................................ATGGATCCCGCTCTCCAAT................................ 19 1 1 2.00 2 0 0 1 1 0 0 0 0
...................................................................................................................................CAAGGGGAATGGGTTCAACG............. 20 0 1 2.00 2 1 0 0 1 0 0 0 0
.....................................................................................................................................AGGGGAATGGGTTCAACGC............ 19 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................................ACAAGGGGAATGGGTTCAACG............. 21 0 1 2.00 2 0 1 1 0 0 0 0 0
............................................................................................CCGCCGTTCCCATCGCACG..................................................... 19 0 1 2.00 2 0 1 1 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCT............................................................................................ 22 1 3 2.00 6 5 1 0 0 0 0 0 0
..................................................................................................................TGGATCCCGCTCTCCAACAAGGGA.......................... 24 1 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................................GGGGAATGGGTTCAACGCAAA......... 21 0 1 2.00 2 1 0 1 0 0 0 0 0
.............................................CATCGAATGGGTGGATGAAG................................................................................................... 20 0 3 1.67 5 0 4 1 0 0 0 0 0
..................................................AATGGGTGGATGAAAAGTGTC............................................................................................. 21 1 3 1.67 5 3 2 0 0 0 0 0 0
...............................................TCGAATGGGTGGATGAAGAGTG............................................................................................... 22 0 3 1.67 5 0 4 0 1 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGTC........................................................................ 21 2 2 1.50 3 0 2 1 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGCGTC...................................................................... 23 1 2 1.50 3 0 2 0 1 0 0 0 0
..................................................AATGGGTGGATGAAGAGT................................................................................................ 18 0 3 1.33 4 2 2 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCA............................................................................................ 22 1 3 1.33 4 4 0 0 0 0 0 0 0
......................................................................................................................................GGGGAATGGGTTCAACGCAAAA........ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................TGGGTTCAACGCACAGGATG.... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................GTTCTACTCCCGCGCCGCCG.................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................CGACATTGGTTCTACTCCCGC......................................................................... 21 0 2 1.00 2 1 0 1 0 0 0 0 0
.........................................................................................................................................GAATGGGTTCAACGCAAAGG....... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................TGAATGGGTTCAACGCAAAGG....... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................ACATTGGTTCTACTCCCG.......................................................................... 18 0 2 1.00 2 0 0 2 0 0 0 0 0
....................................................................................................................................ATCGGGAATGGGTTCAACGCAAAG........ 24 2 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................GGGGAATGGGTTCAACGCA........... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................AGGGGAATGGGTTCAACGCAA.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................GAATGGGTTCAACGCAAAG........ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................ATGGATCCCGCTCTCCAACTT.............................. 21 2 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................CCGCCGTTCCCATCGTACGC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................TGGATCCCGCTCTCCAAC................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................ACATTGGTTCTACTCCCGC......................................................................... 19 0 2 1.00 2 0 0 2 0 0 0 0 0
...............................................................AGAGTGTCGACATTGGTTCTA................................................................................ 21 0 2 1.00 2 0 2 0 0 0 0 0 0
.....................................................................................................CCATCGCACGCCATGGATCCC.......................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................CATCGAATGGGTGGATGAAGA.................................................................................................. 21 0 3 1.00 3 1 2 0 0 0 0 0 0
................................................................................................................CATGGATCCCGCTCTCCAA................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................GGGAATGGGTTCAACGCAA.......... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................ACAAGGGGAATGGGTTCAAC.............. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................CCATCGTACGCCATGGGTACCG......................................... 22 3 4 0.75 3 0 0 1 1 1 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCTG........................................................................................... 23 2 3 0.67 2 1 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCC............................................................................................ 22 1 3 0.67 2 0 0 0 1 1 0 0 0
..............................................ATCGAATGGGTGGATGAAGA.................................................................................................. 20 0 3 0.67 2 0 2 0 0 0 0 0 0
..................................................AATGGTTGGATGAAGAGTGTC............................................................................................. 21 1 3 0.67 2 0 1 0 0 0 1 0 0
...................................................ATGGGTGGATGAAGAGTGTC............................................................................................. 20 0 3 0.67 2 0 0 1 0 1 0 0 0
...........................................................ATGAAGAGTGTCGACATTGG..................................................................................... 20 0 3 0.67 2 2 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCTT........................................................................................... 23 2 3 0.67 2 0 2 0 0 0 0 0 0
...................................................................GGCCGACATTGGTTCTACTCCCG.......................................................................... 23 2 2 0.50 1 0 0 0 0 1 0 0 0
.......................................................................GACATTGGTTCTACTCCCGA......................................................................... 20 1 2 0.50 1 0 0 0 0 1 0 0 0
.............................................................GAAGAGTGTCGACATTGGT.................................................................................... 19 0 2 0.50 1 0 0 0 0 0 1 0 0
.......................................................................GACATTGGTTCTACTCCCGTCC....................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGCGTTT..................................................................... 24 3 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................GACTTTGGTTCTACTCCCGC......................................................................... 20 1 2 0.50 1 0 0 1 0 0 0 0 0
........................................................................ACATTGGTTCTACTCCCGCGA....................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0
............................................................TGAAGAGTGTCGACATTGGTTT.................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................AGAGTGTCGACATTGGTTCTAC............................................................................... 22 0 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGAG........................................................................ 21 1 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................................GAAATTGGTTCTACTCCCG.......................................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGTG........................................................................ 21 1 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................GACATTGGTTCTACTTCCGCG........................................................................ 21 1 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................................GACATTGGTTCTCCTCCCGCG........................................................................ 21 1 2 0.50 1 0 1 0 0 0 0 0 0
........................................................TGGATGAAGAGTGTCGACATTCCTC................................................................................... 25 3 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................AAGAGTGTCGACATTGGTTCT................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGTT........................................................................ 21 2 2 0.50 1 0 0 0 1 0 0 0 0
...................................................AATGGTGGATGAAGAGTGTC............................................................................................. 20 2 4 0.50 2 0 1 1 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCTT......................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCCCGACA....................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................GGCATTGGTTCTACTCCC........................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0
.......................................................................GACATTGGTTCTACTCCCGTTT....................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0
..................................................AATGGGTGGATGACGAGTGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGGAGAGTGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAATGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
.................................................AAATGGGTGGATGAAGAGTGTC............................................................................................. 22 1 3 0.33 1 1 0 0 0 0 0 0 0
.............................................CATCGAATGGGTGGATGAA.................................................................................................... 19 0 3 0.33 1 0 0 0 1 0 0 0 0
..............................................ATCGAATGGGTGGATGAAGAG................................................................................................. 21 0 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGAGTGGATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGCGTC............................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAGGAGTGTC............................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0
............................................CCATCGAATGGGTGGATGAA.................................................................................................... 20 0 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGTGTC............................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCCT........................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTTGATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGATGGATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGGG............................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTTTTT............................................................................................ 22 3 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGATTGTC............................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGGGTGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGCGGATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 0 0 0 1 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGTCTTT.......................................................................................... 24 3 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AGTGGGTGGATGAAGAGTGTCC............................................................................................ 22 2 3 0.33 1 0 0 0 0 1 0 0 0
.................................................AAATGGGTGGATGAAGAGGGTC............................................................................................. 22 2 3 0.33 1 1 0 0 0 0 0 0 0
...................................................ATTGGTGGATGAAGAGTGTC............................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0 0 0
..................................................AGTGGGTGGATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
.................................................CAATGGGTGGATGAAGAGTGTC............................................................................................. 22 1 3 0.33 1 0 1 0 0 0 0 0 0
.............................................CATCGAATGGGTGGATGAAGAG................................................................................................. 22 0 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGCATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................ATTGGGTGGATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 0 0 0 0 1 0 0 0
.........................................TTTCCATCGAATGGGTGGATG...................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTTTC............................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGAGTGCC............................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................ATTTCCATCGAATGGGTGGATG...................................................................................................... 22 0 3 0.33 1 0 0 0 0 0 1 0 0
..................................................AATGGGAGGATGAAGAGTGTC............................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................GACATTGGGTCTACTCCCGCG........................................................................ 21 1 3 0.33 1 0 1 0 0 0 0 0 0
.......................................................................GACATTGGATCTACTCCCGC......................................................................... 20 1 3 0.33 1 0 0 0 0 1 0 0 0
..............................................ATCGAATGGGTGGATGAGGAG................................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0
.......................................................................GACATTGGTTCTACTCGCGTT........................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0
.......................................................................GACATTGGTACTACTCCCGT......................................................................... 20 2 4 0.25 1 0 1 0 0 0 0 0 0
..................................................AATGGGTGGATGAAGGG................................................................................................. 17 1 7 0.14 1 1 0 0 0 0 0 0 0
..................................................AATGGGTGTAGGTAGAGTGT.............................................................................................. 20 3 14 0.07 1 0 0 1 0 0 0 0 0
.......................................................................................CCGCGGCGCCCTTCCGATC.......................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 1
...............................................................AGAGTGTCCACATGGGTTCT................................................................................. 20 2 16 0.06 1 0 0 0 0 0 0 0 1
..............................................ATAGAATGGGTGGATTAGG................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACCGCCTTATTACACGGTAACCTTAAGAAGCTTCGATAACTAAAGGTAGCTTACCCACCTACTTCTCACAGCTGTAACCAAGATGAGGGCGCGGCGGCAAGGGTAGCGTGCGGTACCTAGGGCGAGAGGTTGTTCCCCTTACCCAAGTTGCGTTTCCTACAGGA
************************************....((..........(((((((((.(((..(((.((.....(((...)))....)).)))..)))...)).))).))))...........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902012
CNS imaginal disc
 GSM343916
embryo
.....................................................................................................................TATGGCGCAAGGTTGTTCC............................ 19 3 9 0.22 2 0 2 0
..........................................................................................GCGACGGCAAGGGTAGCCT....................................................... 19 2 5 0.20 1 1 0 0
.................................................................................................CAAGGGTGGCGTGCGATA................................................. 18 2 5 0.20 1 1 0 0
......................................................................GGTGTAACAAAGGTGAGGGC.......................................................................... 20 3 10 0.10 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:2085448-2085611 + dps_17 TGGCGGAATAATGTGCCATTGGAATTCTTCGAAGCTATTGATTTCCATCGAATGGGTGGATGA-AGAGTGTCGACATTGGTTCTACTCCCGCGCCGCCGTTCCCATCGCACGCCATGGATCCCGCTCTCCAACAAGGGGAATGGGTTCAACGCAAAGGATGTCCT
droPer2 scaffold_1:3573878-3574041 + TGGCGGAATAATGTGCCATTGGAATTCTTGGAAGCTATTGATTTCCATCGAATGGGTGGATGA-AGAGTGTCGACATTGGTTCTACTCCCGCGCCGCCGTTCCCATCGCACACCATGGGTCCCGCTCTCCAGCAAGGTGAATGCGTTCAACTCAAAGGATGTCCC
droWil2 scf2_1100000004516:1842499-1842593 - --------------------------------------------------------------------TGCCGGGATTGGTTCTATTCGCGTAC--ACGCTGCAATCGTTTCCCGAAGATTCTTCTATTCAACAAGGTGAATGAGTTTAATGCCAAAGATCTATT
droAna3 scaffold_12943:4582988-4583082 + --------------------------------------------------------------------TGCCGCGATTGGTTCTACACCAGGAC--ACGTTCCAACCGCCAGCCGAAGATTCTGCTCTTCAACAAGATCAACGAGTTCAATGCCAAGGACCTCCT
droKik1 scf7180000302270:577119-577214 + -----------------------------------------------------G--------------TGCCAGAATTGGTTCTACGGCAGGAC--TCGCTCAAGTCGCCAGCCAAAGATTTTGCTTTTCAACAAGGTGAACGAGTTCAATGCCAAGGATCTGCT
droFic1 scf7180000453904:109523-109632 - -----------------------------------------------------GAGTCGATGATGGCCTGCCGCGACTGGTTCTACACGCGCAC--CCGCTCCAACCGCCAGCCGAAGGTGCTGCTCTTCAACAAGGTGAACGAGTTCAACGCCAAGGACCTGCT
droEle1 scf7180000490728:712183-712277 - --------------------------------------------------------------------TGTCGCGATTGGTTCTACACCAGAAC--CCGCTCGAATCGACAGCCGAAAATCCTGCTCTTCAACAAGGTCAACGAGTTCAATGCCAAGGATCTGCT
droRho1 scf7180000768644:89883-89992 + -----------------------------------------------------GAGTCGATGATGGCCTGTCGGGATTGGTTCTACACGAGGAC--TCGATCCAATCGCCAGCCGAAGATCCTGCTCTTCAACAAGGTCAACGAGTTTAATGCCAAGGATCTGCT
droBia1 scf7180000302261:2318408-2318502 - --------------------------------------------------------------------TGCCGGGATTGGTTCTACGCCAGGAC--CCGCTCGAACCGGCAGCCCAAGATCCTGCTCTTCAACAAGGTGAACGAGTTCAATGCCAAGGATCTGCT
droEug1 scf7180000409554:2159172-2159281 + -----------------------------------------------------GAGTCGATGATGGCCTGTCGGGACTGGTTCTACACCAAGAC--CCGCTCGAATCGCCAGCCAAAGATCCTGCTCTTCAACAAAGTCAACGAGTTCAACGCCAAGGATCTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGGCGGAATAATGTGCCATTGGAATTCTTCGAAGCTATTGATTTCCATCGAATGGGTGGATGA-AGAGTGTCGACATTGGTTCTACTCCCGCGCCGCCGTTCCCATCGCACGCCATGGATCCCGCTCTCCAACAAGGGGAATGGGTTCAACGCAAAGGATGTCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................AATGGGTGGATGA-AGAGTGTC.............................................................................................213300.339016110301329805691
..................................................................................................................ATGGATCCCGCTCTCCAACAA..............................21149.004901000020460
........................................................................GACATTGGTTCTACTCCCGCG........................................................................21238.50770220108250210
........................................................................GACATTGGTTCTACTCCCG..........................................................................19222.504503403012050
.............................................................................................CCGCCGTTCCCATCGCACGCC...................................................21115.00150401015040
..................................................AATGGGTGGATGA-AGAGTG...............................................................................................19312.6738000000280100
........................................................................GACATTGGTTCTACTCCCGT.........................................................................2029.501903000112030
........................................................................GACATTGGTTCTACTCCCGC.........................................................................2028.50170804000050
........................................................................GACATTGGTTCTACTCCCGCGT.......................................................................2228.001600000015010
..................................................................................................................ATGGATCCCGCTCTCCAAC................................1918.0080401000030
..................................................AATGGGTGGATGA-AGAGTGT..............................................................................................2037.672301000113080
........................................................................................................................................GGGAATGGGTTCAACGCAAAGG.......2216.0060000000060
........................................................................................................................................GGGAATGGGTTCAACGCAAAG........2115.0050000000050
..................................................AATGGGTGGATGA-AGAG.................................................................................................1734.671400000000140
.........................................................................................................................................GGAATGGGTTCAACGCAAAGG.......2114.0040000000040
..................................................................................................................ATGGATCCCGCTCTCCAACAAA.............................2214.0040000000040
..................................................AATGGGTGGATGA-AGAGTGTCG............................................................................................2233.67110100005050
.............................................................................................CCGCCGTTCCCATCGCACGC....................................................2013.0030001000020
.......................................................................................................................................GGGGAATGGGTTCAACGCAAAG........2213.0030100000020
.........................................................................ACATTGGTTCTACTCCCGCG........................................................................2022.5050000021020
........................................................................GACATTGGTTCTACTCCCGCGTT......................................................................2322.5050000003020
.......................................................................CGACATTGGTTCTACTCCCG..........................................................................2022.5050101011010
............................................................TGA-AGAGTGTCGACATTGG.....................................................................................1932.3370000010060
..................................................................................................................ATGGATCCCGCTCTCCAACAAAAA...........................2412.0020000000020
.......................................................................................................................................GGGGAATGGGTTCAACGCAT..........2012.0020000000020
......................................................................................................................................AGGGGAATGGGTTCAACGCA...........2012.0020000002000
..................................................................................................................ATGGATCCCGCTCTCCAACA...............................2012.0020000000020
...................................................................................................................TGGATCCCGCTCTCCAACAAG.............................2112.0020100000010
..................................................................................................................ATGGATCCCGCTCTCCAAT................................1912.0020100010000
....................................................................................................................................CAAGGGGAATGGGTTCAACG.............2012.0020000010010
......................................................................................................................................AGGGGAATGGGTTCAACGC............1912.0020000000020
...................................................................................................................................ACAAGGGGAATGGGTTCAACG.............2112.0020100001000
.............................................................................................CCGCCGTTCCCATCGCACG.....................................................1912.0020100001000
..................................................AATGGGTGGATGA-AGAGTGTCT............................................................................................2232.0060000001050
...................................................................................................................TGGATCCCGCTCTCCAACAAGGGA..........................2412.0020000000020
.......................................................................................................................................GGGGAATGGGTTCAACGCAAA.........2112.0020100000010
.............................................CATCGAATGGGTGGATGA-AG...................................................................................................2031.6750100004000
...............................................TCGAATGGGTGGATGA-AGAGTG...............................................................................................2231.6750000014000
........................................................................GACATTGGTTCTACTCCCGTC........................................................................2121.5030100002000
..................................................AATGGGTGGATGA-AGAGT................................................................................................1831.3340000002020
..................................................AATGGGTGGATGA-AGAGTGTCA............................................................................................2231.3340000000040
.......................................................................................................................................GGGGAATGGGTTCAACGCAAAA........2211.0010000001000
...............................................................................GTTCTACTCCCGCGCCGCCG..................................................................2011.0010000001000
.......................................................................CGACATTGGTTCTACTCCCGC.........................................................................2121.0020100000010
..........................................................................................................................................GAATGGGTTCAACGCAAAGG.......2011.0010000001000
.........................................................................ACATTGGTTCTACTCCCG..........................................................................1821.0020200000000
.......................................................................................................................................GGGGAATGGGTTCAACGCA...........1911.0010100000000
......................................................................................................................................AGGGGAATGGGTTCAACGCAA..........2111.0010000001000
..........................................................................................................................................GAATGGGTTCAACGCAAAG........1911.0010000000010
..................................................................................................................ATGGATCCCGCTCTCCAACTT..............................2111.0010001000000
...................................................................................................................TGGATCCCGCTCTCCAAC................................1811.0010100000000
.........................................................................ACATTGGTTCTACTCCCGC.........................................................................1921.0020200000000
................................................................AGAGTGTCGACATTGGTTCTA................................................................................2121.0020000002000
......................................................................................................CCATCGCACGCCATGGATCCC..........................................2111.0011000000000
.............................................CATCGAATGGGTGGATGA-AGA..................................................................................................2131.0030000002010
.................................................................................................................CATGGATCCCGCTCTCCAA.................................1911.0010100000000
........................................................................................................................................GGGAATGGGTTCAACGCAA..........1911.0010100000000
...................................................................................................................................ACAAGGGGAATGGGTTCAAC..............2011.0010000001000
..................................................AATGGGTGGATGA-AGAGTGTCTG...........................................................................................2330.6720000001010
..................................................AATGGGTGGATGA-AGAGTGTCC............................................................................................2230.6720001010000
..............................................ATCGAATGGGTGGATGA-AGA..................................................................................................2030.6720000002000
...................................................ATGGGTGGATGA-AGAGTGTC.............................................................................................2030.6720101000000
...........................................................ATGA-AGAGTGTCGACATTGG.....................................................................................2030.6720000000020
..................................................AATGGGTGGATGA-AGAGTGTCTT...........................................................................................2330.6720000002000
........................................................................GACATTGGTTCTACTCCCGA.........................................................................2020.5010001000000
.............................................................GA-AGAGTGTCGACATTGGT....................................................................................1920.5011000000000
........................................................................GACATTGGTTCTACTCCCGCGTTT.....................................................................2420.5010100000000
.........................................................................ACATTGGTTCTACTCCCGCGA.......................................................................2120.5010000010000
............................................................TGA-AGAGTGTCGACATTGGTTT..................................................................................2220.5010000001000
................................................................AGAGTGTCGACATTGGTTCTAC...............................................................................2220.5010000001000
..............................................................A-AGAGTGTCGACATTGGTTCT.................................................................................2120.5010000000010
........................................................................GACATTGGTTCTACTCCCGTT........................................................................2120.5010000010000
........................................................................GACATTGGTTCTACTCCCTT.........................................................................2020.5010100000000
........................................................................GACATTGGTTCTACTCCCGACA.......................................................................2220.5010000000010
........................................................................GACATTGGTTCTACTCCCGTTT.......................................................................2220.5010100000000
.............................................CATCGAATGGGTGGATGA-A....................................................................................................1930.3310000010000
..............................................ATCGAATGGGTGGATGA-AGAG.................................................................................................2130.3310000001000
............................................CCATCGAATGGGTGGATGA-A....................................................................................................2030.3310000001000
..................................................AATGGGTGGATGA-AGAGTGTCCT...........................................................................................2330.3310000001000
..................................................AATGGGTGGATGA-AGAGTGTCTTT..........................................................................................2430.3310000001000
.............................................CATCGAATGGGTGGATGA-AGAG.................................................................................................2230.3310000001000
.........................................TTTCCATCGAATGGGTGGATG.......................................................................................................2130.3310000001000
........................................ATTTCCATCGAATGGGTGGATG.......................................................................................................2230.3311000000000
droPer2
TGGCGGAATAATGTGCCATTGGAATTCTTGGAAGCTATTGATTTCCATCGAATGGGTGGATGA-AGAGTGTCGACATTGGTTCTACTCCCGCGCCGCCGTTCCCATCGCACACCATGGGTCCCGCTCTCCAGCAAGGTGAATGCGTTCAACTCAAAGGATGTCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................AATGGGTGGATGA-AGAGTGTC.............................................................................................21360.0018000000180
.................................................GAATGGGTGGATGA-AGAGTG...............................................................................................20338.3311500000115
..............................................ATCGAATGGGTGGATGA-AGA..................................................................................................20325.00750000075
...............................................TCGAATGGGTGGATGA-AGAGTG...............................................................................................22324.67740000074
..................................................AATGGGTGGATGA-AGAGTG...............................................................................................19319.00570000057
..............................................ATCGAATGGGTGGATGA-AG...................................................................................................19318.33550000055
........................................................................GACATTGGTTCTACTCCCGT.........................................................................20314.33430002041
..............................................................A-AGAGTGTCGACATTGGTTCT.................................................................................21314.00420002040
..................................................AATGGGTGGATGA-AGAGTGT..............................................................................................2038.67260000026
........................................................................GACATTGGTTCTACTCCCGCGT.......................................................................2238.33250000025
...............................................TCGAATGGGTGGATGA-AGA..................................................................................................1938.33250000025
..........................................................................................................................................GAATGCGTTCAACTCAAAGGA......2118.008000008
.........................................................................................................................................TGAATGCGTTCAACTCAAAGG.......2117.007000106
................................................CGAATGGGTGGATGA-AGAGTG...............................................................................................2136.33190000019
..............................................ATCGAATGGGTGGATGA-AGAG.................................................................................................2136.00180000018
.............................................CATCGAATGGGTGGATGA-AG...................................................................................................2035.33160000016
........................................................................GACATTGGTTCTACTCCCGCG........................................................................2134.33130101011
..........................................................................................................................................GAATGCGTTCAACTCAAAGGAA.....2214.004000004
..................................................AATGGGTGGATGA-AGAGTGTCT............................................................................................2233.67110000011
........................................................................GACATTGGTTCTACTCCCGCGTT......................................................................2333.67110000011
...............................................TCGAATGGGTGGATGA-AG...................................................................................................1833.33100000010
.............................................................................................................................................TGCGTTCAACTCAAAGGATG....2013.003000003
...............................................TCGAATGGGTGGATGA-AGAG.................................................................................................2032.337000007
..........................................................................................................................................GAATGCGTTCAACTCAAAGG.......2012.002000002
.........................................TTTCCATCGAATGGGTGGATG.......................................................................................................2132.006000006
............................................................TGA-AGAGTGTCGACATTGGTT...................................................................................2132.006000006
................................................................AGAGTGTCGACATTGGTTCT.................................................................................2032.006000006
..................................................AATGGGTGGATGA-AGAGTGTCC............................................................................................2232.006000006
..................................................AATGGGTGGATGA-AGAGT................................................................................................1831.675000005
..................................................AATGGGTGGATGA-AGAGTGTCG............................................................................................2231.675000005
......................................................GGTGGATGA-AGAGTGTCGAC..........................................................................................2031.675000005
................................................................AGAGTGTCGACATTGGTTCTA................................................................................2131.675000005
.................................................GAATGGGTGGATGA-AGAGT................................................................................................1931.675000005
............................................................................................................................CTCTCCAGCAAGGTGAATGCG....................2121.503000003
.......................................................................CGACATTGGTTCTACTCCCGT.........................................................................2131.334000103
.........................................................................ACATTGGTTCTACTCCCGCG........................................................................2031.334010003
..............................................ATCGAATGGGTGGATGA-AGAGTG...............................................................................................2331.334000004
............................................................TGA-AGAGTGTCGACATTGGT....................................................................................2031.334000004
........................................................................GACATTGGTTCTACTCCCGTT........................................................................2131.334000004
..................................................AATGGGTGGATGA-AGAGTGTCTT...........................................................................................2331.003000003
..................................................................................................................ATGGGTCCCGCTCTCCAGCA...............................2011.001000100
..................................................AATGGGTGGATGA-AGAGTGTT.............................................................................................2131.003000003
.......................................................................................................................................GGTGAATGCGTTCAACTCAAAGG.......2311.001000001
.............................................................................................................................................TGCGTTCAACTCAAAGGATGTC..2211.001000001
...................................................................................................................TGGGTCCCGCTCTCCAGCA...............................1911.001000100
.............................................................GA-AGAGTGTCGACATTGGT....................................................................................1931.003000003
.....................................................................................................................GGTCCCGCTCTCCAGCAAGG............................2011.001010000
.........................................................................................................................................TGAATGCGTTCAACTCAAAGGA......2211.001000001
..........................................................................................................................................GAATGCGTTCAACTCAAAGGAT.....2211.001000001
................................................CGAATGGGTGGATGA-AGAG.................................................................................................1931.003000003
...................................................................................................TTCCCATCGCACACCATGGGT.............................................2111.001010000
........................................................................GACATTGGTTCTACTCCCG..........................................................................1931.003010002
..................................................AATGGGTGGATGA-AGAGTGTCCT...........................................................................................2331.003000003
.................................................................................................................................CAGCAAGGTGAATGCGTTCAA...............2111.001000001
....................................................................................................................................CAAGGTGAATGCGTTCAAC..............1921.002000002
.......................................................................CGACATTGGTTCTACTCCCG..........................................................................2031.003010002
........................................................TGGATGA-AGAGTGTCGACATT.......................................................................................2131.003000003
.................................................GAATGGGTGGATGA-AGAGTGTC.............................................................................................2231.003000003
................................................................................................CCGTTCCCATCGCACACCATGGGTC............................................2511.001010000
......................................TGATTTCCATCGAATGGGTGT..........................................................................................................2130.672000002
..................................................AATGGGTGGATGA-AGAGTT...............................................................................................1930.672000002
................................................................AGAGTGTCGACATTGGTTCTAC...............................................................................2230.672000002
.............................................CATCGAATGGGTGGATGA-AGA..................................................................................................2130.672000002
.............................................................GA-AGAGTGTCGACATTGGTT...................................................................................2030.672000002
......................................................GGTGGATGA-AGAGTGTCGAA..........................................................................................2030.672000002
.................................................GAATGGGTGGATGA-AGAG.................................................................................................1830.672000002
................................................CGAATGGGTGGATGA-AGAGT................................................................................................2030.672000002
........................................................................GACATTGGTTCTACTCCCGCGTTC.....................................................................2430.672000002
..................................................AATGGGTGGATGA-AGAGTGTTT............................................................................................2230.672000002
.......................................GATTTCCATCGAATGGGTGG..........................................................................................................2030.672000002
..............................................................A-AGAGTGTCGACATTGGTTCTC................................................................................2230.672000002
..............................................................A-AGAGTGTCGACATTGGTTC..................................................................................2030.672000002
..............................GAAGCTATTGATTTCCATCG...................................................................................................................2020.501000001
............................................................................................................................CTCTCCAGCAAGGTGAATGC.....................2020.501000001
............................................................................................................................CTCTCCAGCAAGGTGAATGCGT...................2220.501010000
..............................GAAGCTATTGATTTCCATCGA..................................................................................................................2120.501000001
.........................................................................ACATTGGTTCTACTCCCGCGCC......................................................................2220.501000100
............................................................................TTGGTTCTACTCCCGCGCCG.....................................................................2020.501000001
.............................................................................TGGTTCTACTCCCGCGCCG.....................................................................1920.501000001
...........................................................ATGA-AGAGTGTCGACATTGGT....................................................................................2130.331000001
............................................................TGA-AGAGTGTCGACATTGG.....................................................................................1930.331000001
....................................................TGGGTGGATGA-AGAGTGTCGA...........................................................................................2130.331000001
............................................................TGA-AGAGTGTCGACATTGGTTAAT................................................................................2430.331000001
.................................................GAATGGGTGGATGA-AGAGTT...............................................................................................2030.331000001
..................................................AATGGGTGGATGA-AGAGTGA..............................................................................................2030.331000001
....................................................................TGTCGACATTGGTTCTACTCC............................................................................2130.331000001
.........................................TTTCCATCGAATGGGTGGATC.......................................................................................................2130.331000001
.................................................GAATGGGTGGATGA-AGAGTGT..............................................................................................2130.331000001
..................................................AATGGGTGGATGA-AGAGTGTCGT...........................................................................................2330.331000001
..................................................AATGGGTGGATGA-AGAGTGTCGTT..........................................................................................2430.331000001
.........................................TTTCCATCGAATGGGTGGA.........................................................................................................1930.331000001
...................................................ATGGGTGGATGA-AGAGTGTC.............................................................................................2030.331000001
..........................................TTCCATCGAATGGGTGGATT.......................................................................................................2030.331000001
...............................................TCGAATGGGTGGATGA-AGAGT................................................................................................2130.331000001
..................................................AATGGGTGGATGA-AGAGTGTA.............................................................................................2130.331000001
.............................................................GA-AGAGTGTCGACATTGGTTC..................................................................................2130.331000001
.................................................GAATGGGTGGATGA-AGAGA................................................................................................1930.331000001
............................................................TGA-AGAGTGTCGACATTGGTTA..................................................................................2230.331000001
............................................................TGA-AGAGTGTCGACATTGGTTCC.................................................................................2330.331000001
....................................................TGGGTGGATGA-AGAGTGTCG............................................................................................2030.331000001
..............................................ATCGAATGGGTGGATGA-AGAGG................................................................................................2230.331000001
.....................................TTGATTTCCATCGAATGGGTGT..........................................................................................................2230.331000001
..............................................................A-AGAGTGTCGACATTGGTTCTA................................................................................2230.331000001
........................................................................GACATTGGTTCTACTCCCGCGCT......................................................................2330.331000001
................................................CGAATGGGTGGATGA-AGA..................................................................................................1830.331000001
.............................................................GA-AGAGTGTCGACATTGGTTT..................................................................................2130.331010000
.............................................CATCGAATGGGTGGATGA-.....................................................................................................1830.331000001
.........................................................................ACATTGGTTCTACTCCCGTT........................................................................2040.251000001
droWil2
--------------------------------------------------------------------TGCCGGGATTGGTTCTATTCGCGTAC--ACGCTGCAATCGTTTCCCGAAGATTCTTCTATTCAACAAGGTGAATGAGTTTAATGCCAAAGATCTATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droAna3
--------------------------------------------------------------------TGCCGCGATTGGTTCTACACCAGGAC--ACGTTCCAACCGCCAGCCGAAGATTCTGCTCTTCAACAAGATCAACGAGTTCAATGCCAAGGACCTCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droKik1
-----------------------------------------------------G--------------TGCCAGAATTGGTTCTACGGCAGGAC--TCGCTCAAGTCGCCAGCCAAAGATTTTGCTTTTCAACAAGGTGAACGAGTTCAATGCCAAGGATCTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------------------GAGTCGATGATGGCCTGCCGCGACTGGTTCTACACGCGCAC--CCGCTCCAACCGCCAGCCGAAGGTGCTGCTCTTCAACAAGGTGAACGAGTTCAACGCCAAGGACCTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------------------TGTCGCGATTGGTTCTACACCAGAAC--CCGCTCGAATCGACAGCCGAAAATCCTGCTCTTCAACAAGGTCAACGAGTTCAATGCCAAGGATCTGCTSizeHit CountTotal NormTotal
No Reads
droRho1
-----------------------------------------------------GAGTCGATGATGGCCTGTCGGGATTGGTTCTACACGAGGAC--TCGATCCAATCGCCAGCCGAAGATCCTGCTCTTCAACAAGGTCAACGAGTTTAATGCCAAGGATCTGCTSizeHit CountTotal NormTotal
No Reads
droBia1
--------------------------------------------------------------------TGCCGGGATTGGTTCTACGCCAGGAC--CCGCTCGAACCGGCAGCCCAAGATCCTGCTCTTCAACAAGGTGAACGAGTTCAATGCCAAGGATCTGCTSizeHit CountTotal NormTotal
No Reads
droEug1
-----------------------------------------------------GAGTCGATGATGGCCTGTCGGGACTGGTTCTACACCAAGAC--CCGCTCGAATCGCCAGCCAAAGATCCTGCTCTTCAACAAAGTCAACGAGTTCAACGCCAAGGATCTGCTSizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 08:00 PM