ID:

dps_1687

 Coordinate:

4_group4:5440138-5440288 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.7 -17.5 -17.3

Flybase annnotation

CDS [Dpse\GA18250-cds]; exon [dpse_GLEANR_9497:6]; intron [Dpse\GA18250-in]

No Repeatable elements found

mature
  1. Unknown_group_332:6308-6327 +
  2. Unknown_group_332:10052-10071 +
  3. Unknown_group_461:5807-5826 +
  4. Unknown_group_43:88282-88301 +
  5. Unknown_group_564:3748-3767 +
  6. Unknown_group_177:1088-1107 +
  7. Unknown_group_65:25393-25412 +
  8. 3:18237332-18237351 +
  9. 2:18193338-18193357 +
  10. Unknown_group_188:1219-1238 +
  11. 4_group1:118268-118287 +
  12. 4_group3:8384975-8384994 +
  13. XL_group1a:108924-108943 +
  14. XL_group1a:711058-711077 +
  15. XL_group1a:4983828-4983847 +
  16. XL_group1a:5271129-5271148 +
  17. Unknown_singleton_1607:2026-2045 +
  18. Unknown_singleton_1076:1230-1249 +
  19. Unknown_singleton_435:164-183 +
  20. Unknown_singleton_2998:1794-1813 +
  21. Unknown_group_13:8902-8921 +
  22. Unknown_group_81:2027-2046 +
  23. Unknown_group_53:1293-1312 +
  24. Unknown_group_88:27646-27665 +
  25. 3:1292226-1292245 +
  26. 3:3790796-3790815 +
  27. 3:13999381-13999400 +
  28. 2:5287467-5287486 +
  29. 2:26128173-26128192 +
  30. XR_group8:9201836-9201855 +
  31. 4_group3:11240222-11240241 +
  32. dps_1687  4_group4:5440189-5440208 +
  33. Unknown_group_445:13057-13076 +
  34. XL_group1a:521658-521677 +
  35. XL_group1a:1012025-1012044 +
  36. Unknown_singleton_1073:236-255 +
  37. Unknown_singleton_3455:1429-1448 +
  38. Unknown_singleton_101:1902-1921 +
  39. Unknown_singleton_138:1185-1204 +
  40. Unknown_group_725:4413-4432 +
  41. Unknown_group_18:24483-24502 +
  42. Unknown_group_404:9327-9346 +
  43. Unknown_group_737:1863-1882 +
  44. Unknown_group_125:13210-13229 +
  45. 3:25780-25799 +
  46. 3:3129698-3129717 +
  47. 3:14380872-14380891 +
  48. Unknown_group_242:24228-24247 +
  49. 4_group1:267422-267441 +
  50. Unknown_group_556:3980-3999 +
  51. Unknown_group_556:5470-5489 +
  52. Unknown_group_556:6936-6955 +
  53. Unknown_group_556:7859-7878 +
  54. Unknown_group_556:9323-9342 +
  55. Unknown_singleton_3590:1210-1229 +
  56. Unknown_singleton_246:1656-1675 +
  57. Unknown_singleton_2985:2014-2033 +
  58. Unknown_group_806:4285-4304 +
  59. Unknown_singleton_2762:1286-1305 +
  60. Unknown_singleton_3194:479-498 +
  61. Unknown_group_98:853-872 -
  62. Unknown_group_62:6063-6082 -
  63. Unknown_group_12:5321-5340 -
  64. Unknown_group_23:10368-10387 -
  65. Unknown_singleton_799:2383-2402 -
  66. 3:13455203-13455222 -
  67. 2:2917660-2917679 -
  68. 2:4412725-4412744 -
  69. 2:22477123-22477142 -
  70. 2:26929500-26929519 -
  71. 2:28133971-28133990 -
  72. 4_group1:2851642-2851661 -
  73. Unknown_group_621:6567-6586 -
  74. 4_group4:4391349-4391368 -
  75. 4_group4:6574969-6574988 -
  76. Unknown_group_289:832-851 -
  77. Unknown_group_351:7665-7684 -
  78. Unknown_singleton_10:331-350 -
  79. Unknown_singleton_380:331-350 -
  80. Unknown_group_256:5915-5934 -
  81. Unknown_group_14:52649-52668 -
  82. XL_group1e:4462137-4462156 -
  83. 4_group5:1789311-1789330 -
  84. Unknown_group_82:5211-5230 -
  85. Unknown_group_46:7643-7662 -
  86. Unknown_group_783:1419-1438 -
  87. 3:6471900-6471919 -
  88. 2:30707755-30707774 -
  89. 4_group1:108811-108830 -
  90. 4_group1:3983589-3983608 -
  91. 4_group3:8914184-8914203 -
  92. 4_group4:1151727-1151746 -
  93. 4_group4:1727441-1727460 -
  94. 4_group4:5455088-5455107 -
  95. Unknown_singleton_2089:605-624 -
  96. Unknown_singleton_2721:1760-1779 -
  97. Unknown_singleton_231:1491-1510 -
  98. Unknown_group_659:2607-2626 -
  99. Unknown_singleton_1015:77-96 -
  100. Unknown_singleton_2088:640-659 -
  101. Unknown_group_172:903-922 +
  102. XL_group1e:2397885-2397904 +
  103. Unknown_singleton_874:20335-20354 +
  104. Unknown_group_141:3916-3935 +
  105. 3:5789153-5789172 +
  106. 2:23438517-23438536 +
  107. 2:23888000-23888019 +
  108. 2:30128336-30128355 +
  109. XR_group8:4758972-4758991 +
  110. Unknown_group_278:1454-1473 +
  111. 4_group4:1729380-1729399 +
  112. 4_group4:1847963-1847982 +
  113. 4_group4:6146970-6146989 +
  114. Unknown_group_664:4249-4268 +
  115. XL_group1a:471721-471740 +
  116. Unknown_group_338:2558-2577 +
  117. Unknown_singleton_2090:987-1006 +
  118. Unknown_singleton_2087:2285-2304 +
  119. Unknown_singleton_2161:1022-1041 +
  120. Unknown_singleton_541:1238-1257 +
  121. Unknown_group_24:91561-91580 -
  122. Unknown_group_94:56103-56122 -
  123. Unknown_group_49:986-1005 -
  124. Unknown_group_563:128494-128513 -
  125. Unknown_group_52:11174-11193 -
  126. Unknown_group_52:14622-14641 -
  127. Unknown_group_222:2193-2212 -
  128. 3:2898826-2898845 -
  129. 3:7138481-7138500 -
  130. 2:3496339-3496358 -
  131. 2:11563817-11563836 -
  132. Unknown_group_223:10590-10609 -
  133. Unknown_group_401:1596-1615 -
  134. Unknown_singleton_2941:452-471 -
  135. XL_group1a:1612818-1612837 -
  136. XL_group1a:5061631-5061650 -
  137. Unknown_singleton_3202:436-455 -
  138. Unknown_singleton_2:546-565 -
  139. Unknown_singleton_86:29-48 -
  140. Unknown_singleton_375:1817-1836 -
star
  1. XL_group1e:2698082-2698102 +
  2. XL_group1e:6326959-6326979 +
  3. 3:3156490-3156510 +
  4. 3:4608343-4608363 +
  5. 3:15571837-15571857 +
  6. 2:26128225-26128245 +
  7. Unknown_singleton_1517:17565-17585 +
  8. 4_group3:1511649-1511669 +
  9. 4_group3:6314324-6314344 +
  10. dps_1687  4_group4:5440241-5440261 +
  11. XL_group1a:4094958-4094978 +
  12. XL_group1a:5566579-5566599 +
  13. Unknown_group_647:10701-10721 +
  14. Unknown_singleton_1607:1976-1996 +
  15. Unknown_group_569:4369-4389 +
  16. Unknown_group_481:11215-11235 +
  17. Unknown_singleton_1490:1302-1322 +
  18. Unknown_group_725:4465-4485 +
  19. Unknown_singleton_285:1652-1672 +
  20. Unknown_singleton_1414:504-524 +
  21. Unknown_group_104:2905-2925 +
  22. Unknown_group_43:56118-56138 +
  23. Unknown_group_172:955-975 +
  24. Unknown_singleton_3883:3452-3472 +
  25. Unknown_group_48:32963-32983 +
  26. Unknown_group_141:3968-3988 +
  27. 3:4753108-4753128 +
  28. 3:5789205-5789225 +
  29. 2:20782996-20783016 +
  30. 2:23888052-23888072 +
  31. XR_group8:4759024-4759044 +
  32. 4_group4:5639869-5639889 +
  33. Unknown_group_664:4301-4321 +
  34. XL_group1a:756617-756637 +
  35. Unknown_group_781:1418-1438 +
  36. Unknown_group_158:11106-11126 +
  37. Unknown_singleton_952:799-819 +
  38. Unknown_singleton_2090:1039-1059 +
  39. Unknown_singleton_541:1290-1310 +
  40. Unknown_singleton_2182:1195-1215 +
  41. Unknown_group_62:6010-6030 -
  42. Unknown_group_94:56050-56070 -
  43. XL_group1e:8294118-8294138 -
  44. Unknown_group_355:2328-2348 -
  45. Unknown_group_355:15884-15904 -
  46. Unknown_singleton_988:1513-1533 -
  47. 3:468920-468940 -
  48. 3:18711474-18711494 -
  49. 3:19224437-19224457 -
  50. 2:7487506-7487526 -
  51. Unknown_singleton_3705:655-675 -
  52. Unknown_singleton_2941:394-414 -
  53. Unknown_singleton_2012:5190-5210 -
  54. XR_group6:2457289-2457309 -
  55. XL_group1a:4208270-4208290 -
  56. Unknown_group_819:1226-1246 -
  57. Unknown_singleton_114:25-45 -
  58. Unknown_singleton_3451:1135-1155 -
  59. Unknown_singleton_1842:14006-14026 -
  60. Unknown_singleton_550:785-805 -
  61. Unknown_group_6:76978-76998 +
  62. Unknown_group_257:12272-12292 +
  63. Unknown_group_391:12170-12190 +
  64. XL_group1e:322552-322572 +
  65. XL_group3b:223978-223998 +
  66. Unknown_group_7:121460-121480 +
  67. Unknown_group_44:14237-14257 +
  68. 3:316012-316032 +
  69. Unknown_group_542:2350-2370 +
  70. Unknown_group_105:7055-7075 +
  71. XR_group6:7175595-7175615 +
  72. Unknown_group_647:6390-6410 +
  73. Unknown_singleton_1309:614-634 +
  74. Unknown_singleton_1136:1404-1424 +
  75. Unknown_group_211:264-284 +
  76. Unknown_singleton_1919:710-730 +
  77. Unknown_singleton_2759:1787-1807 +
  78. Unknown_singleton_817:588-608 +
  79. Unknown_singleton_2042:326-346 +
  80. Unknown_singleton_2532:829-849 +
  81. 4_group5:2337771-2337791 +
  82. 3:7029640-7029660 +
  83. 4_group4:5010149-5010169 +
  84. XL_group1a:5353928-5353948 +
  85. Unknown_singleton_2531:871-891 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGATTCTGGGCCTGCAGTATGGCACGGCCATCGACATGTGGAGCCTGGGTGAGTGTGTGGGATTTTCAGAGCCCACTTTTAATTAAAAACGAGGGGGAACGTTGTGAGTTGCTGCGGACACCGCAACTCTACGGTTATACCCGATACTAAGTCAGTATGGCTCTCCTCCGGCAGACGCCGCTAATATTTAACGACACGACAAAGAGTGCGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGANNNNNN
*****************************************************************************************************(((...((((...(((((...))))))))).)))(((((((..(((.....))).)))))))...........***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 V112
male body		 GSM343916
embryo
 M059
embryo
 GSM444067
head
 M022
male body		 M062
head
 SRR902012
CNS imaginal disc
.....................................................................................................CGTTGTGAGTTGCTGCGGAC.................................................................................................................................. 20 0 20 6.35 127 127 0 0 0 0 0 0 0 0 0
...........................................................................................................GAGTTGCTGCGGACACCGCAAC.......................................................................................................................... 22 0 20 4.10 82 82 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCAGTATGGCTCTCCTCCGGC............................................................................. 21 0 20 3.20 64 55 9 0 0 0 0 0 0 0 0
..................................................................................................................................................TACTAAGTCAGTATGGCTCTCCTCC................................................................................ 25 0 20 2.85 57 0 0 0 0 57 0 0 0 0 0
..................................................................................................................................................TACTAAGTCAGTATGGCTCTCC................................................................................... 22 0 20 1.80 36 0 0 36 0 0 0 0 0 0 0
....................................................................................................................CGGACACCGCAACTCTACGG................................................................................................................... 20 0 20 1.50 30 5 18 0 0 0 0 0 7 0 0
................CCGTATGGAAGGGCCATCG........................................................................................................................................................................................................................ 19 3 12 1.33 16 15 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................TAAGTCAGTATGGCTCTCCTCCGGC............................................................................. 25 0 20 1.30 26 16 0 10 0 0 0 0 0 0 0
..................................................................................................................................................TACGAAGTCAGTATGGCTCTCCTCC................................................................................ 25 1 20 1.30 26 0 0 0 0 0 26 0 0 0 0
.........................CCGGTCATCGACATGTGG................................................................................................................................................................................................................ 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................CATCGACATGTGGAGCCTGGG........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................GTGAGTTGCTGCGGACACCG.............................................................................................................................. 20 0 20 0.90 18 0 0 0 18 0 0 0 0 0 0
....................................................................................................................CGGACACCGCAACTCTACGGTTATAC............................................................................................................. 26 0 20 0.75 15 0 0 15 0 0 0 0 0 0 0
............................................................................................................................................................GTATGGCTCTCCTCCGGCA............................................................................ 19 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0
.......................................................................................................TTGTGAGTTGCTGCGGACA................................................................................................................................. 19 0 20 0.55 11 0 0 0 11 0 0 0 0 0 0
.......................................................................................................................................................................................TAATATTTAACGACACGACAAAGA............................................ 24 0 20 0.55 11 0 5 6 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACGACAAAGAGTGCGTGCGAGAGAG............................. 25 0 20 0.50 10 9 0 1 0 0 0 0 0 0 0
...................................................TGAGGGTGTCGGATTTTCAGT................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTAACGACACGACAAAGAGTG......................................... 21 0 20 0.40 8 6 0 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................................CGTGCGAGAGAGACAGAAAAT.................... 21 0 20 0.40 8 0 5 3 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGAG........................................... 22 0 20 0.40 8 0 7 0 0 0 0 0 0 1 0
...................................................................................................................GCGGACACCGCAACTCTACGG................................................................................................................... 21 0 20 0.35 7 0 7 0 0 0 0 0 0 0 0
...............................................................................................................TGCTGCGGACACCGCAACTCTACGGT.................................................................................................................. 26 0 20 0.35 7 0 7 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGAGTGCGTGCGAGAGAG............................. 19 0 20 0.35 7 0 0 0 7 0 0 0 0 0 0
.............................................................................................................................................................................................................................GACAGAAAATCAGTCTGAGCG......... 21 0 20 0.35 7 0 0 0 7 0 0 0 0 0 0
...........................................................................................................................CGCAACTCTACGGTTATACCC........................................................................................................... 21 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GACAAAGAGTGCGTGCGAGAG............................... 21 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGTGCGTGCGAGAGAGACAG......................... 20 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CGACAAAGAGTGCGTGCGAGT................................ 21 1 20 0.25 5 5 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CAGTATGGCTCTCCTCCGGCAGACG........................................................................ 25 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAATATTTAACGACACGACAAAGAGT.......................................... 26 0 20 0.25 5 4 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................ATTTAACGACACGACAAAGAG........................................... 21 0 20 0.25 5 3 0 0 2 0 0 0 0 0 0
.......................................................................................AAAACGAGGGGGAACGTTGTG............................................................................................................................................... 21 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGAAAATCAGTCTGAGCGTG....... 20 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGTCAGTATGGCTCTCCTCCGG.............................................................................. 23 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0
..............................................................................................................................................CCGATACTAAGTCAGTATGG......................................................................................... 20 0 20 0.20 4 1 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAATTAACGACACGACAAAGAG........................................... 22 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAAAGAGTGCGTGCGAGAGAGACA.......................... 24 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
..............................................................................TTGTGATTATAAACGAGGGGG........................................................................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACAGAAAATCAGTCTGAGCG......... 20 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAAGTCAGTATGGCTCTCCTCCGGCAG........................................................................... 27 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGAA........................................... 22 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACTAAGTCAGTATGGCTCTCCTC................................................................................. 24 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0
.......................................................................................................................................................................................TCATATTTAACGACACGACAAAGAG........................................... 25 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAAGAGTGCGTGCGAGAGAGA............................ 21 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACGACAAAGAGTGCGTGCGAGAGA.............................. 24 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAATATTTAACGACACGACAA............................................... 21 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................................TGCGGACACCGCAACTCTACGG................................................................................................................... 22 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGAGT.......................................... 23 0 20 0.15 3 0 0 2 0 0 1 0 0 0 0
...........................................................................................................................................TACCCGATACTAAGTCAGTATG.......................................................................................... 22 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATTTAACGACACGACAAAGA............................................ 20 0 20 0.10 2 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGCTAATATTTAACGACACGACAAAGAG........................................... 28 0 20 0.10 2 1 0 0 0 0 1 0 0 0 0
............................................................................................GAGGGGGAACGTTGTGAGTTGC......................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CTAAGTCAGTATGGCTCTCCTCCGGC............................................................................. 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AATATTTAACGACACGACAAAGAG........................................... 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........................................................................................................TGAGTTCCTGCGGACACCGCAAC.......................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................ACCCGATACTAAGTCAGTATGGCTCT..................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................GGGGAACGTTGTGAGTTG.......................................................................................................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GACAAAGAGTGCGTGCGAGAGAGAC........................... 25 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAGAAAATCAGTCTGAGCGTG....... 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTAACGACACGACAAAGAG........................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGAGTGCGTGCGAGAGAGAC........................... 20 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCGAGAGAGACAGAAA...................... 17 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
................................................................................................................................CTCTACGGTTATACCCGATAC...................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................TGCGGACACCGCAACTCTACGGTT................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACTAAGTCAGTATGGCTCTA.................................................................................... 21 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATATTTAACGACACGACAAAG............................................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCGAGAGAGACAGAAAATC................... 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................CACTAAGTCAGTATGGCTCTCCTCC................................................................................ 25 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGGGTGC........................................ 25 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAAAGAGTGCGTGCGAGAGAGAC........................... 23 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
................................................................................TAAATTAAAAACGAGAGGGAACGT................................................................................................................................................... 24 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAAGAGTGCGTGCGAGAGAGACAG......................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AGTTAACGACACGACAAAGAGTGCG....................................... 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................CTCTCCTCCGGCAGACGCC...................................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGAGAA......................................... 24 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGG............................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................CAACTCTACGGTTATACCCGAT........................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................TAATATTTAACGACACGACAGAGAG........................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................TATGGCTCTCCTCCGGCAGA.......................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
....................................................................................TTAAAGACGGGGGGGAGCGTTG................................................................................................................................................. 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATTTAACGACACGACAAAGAGTGC........................................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGCTAATATTTAACGACACGACAAA.............................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTAACGACACGACAAAGAGTGCG....................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAATATTTAACGACACGACAAAGAGTG......................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................CTGCGGACACCGCAACTCTACGGT.................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGACACGACAAAGAGTGCG....................................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TAATAATTAACGACACGACAAA.............................................. 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CAGACGCCGCTAATATTTA........................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCGAGAGAGACAGAAAATC................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................GACGCCGCTAATATTTAACGACACGAGAA............................................... 29 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GAGTGCGTGCGAGAGAGAC........................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................TAATATTTAACGACACGACAAAG............................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATTTAACGACACGACAAAGAGTG......................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GGCAGACGCCGCTAATATTTAACGA....................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................ACGTTGTGAGTTGCTGCGG.................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................TAATAATTAACGACACGACAAAGAGTG......................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................GCTGCGGACACCGCAACTCTACGGTTA................................................................................................................ 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACGACAAAGAGTGCGTGCGAGAGAGAC........................... 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................CGGACACCGCAACTCTACGGT.................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................CAGACGCCGCTAATATTTAACGACAC.................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGT............................................ 21 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................ACGACACGACAAAGAGTGCGT...................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................AGACAGAAAATCAGTCTGAGCGT........ 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................ACACGACAAAGAGTGCGTGCG................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................TACGGTTATACCCGATACTAGGTCAGT............................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAAGTCAGTAGGGCTCTCCTCCGGC............................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAGAAAATCAGTCTGAGCGTGA...... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................CCGCTAATATTTAACGACACG................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGAGTGCGTGCGAGAGAGACAGA........................ 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................AGTGCGTGCGAGAGAGACAGAA....................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TAATATTTAACGACACGACA................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGAGTGC........................................ 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................................................................................................GGGAACGTTGTGAGTTGCTGCG..................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TTGTATTTAACGACACGACAAAGAG........................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTAACGACACGACAAGGAGT.......................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTCCTCCGGCAGACGCCGCTA.................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................TAAAAACGAGGGGGAACGTTGTGA.............................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................CAACTCTACGGTTATACCCGA......................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................TACTAAGTCAGTATGGCTCTACTCC................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCTAATATTTAACGACACGAA................................................. 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGA............................................ 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCGTGCGAGAGAGACAGAAAATC................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................CCTCCGGCAGACGCCGCTAA................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGCTCATATTTAACGACACGACAAAGAG........................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTTAACGACACGACAAAGAATGCG....................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACTAAGTCAGTTTGGCTCTCCTCC................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTAACGACACGACAAAGAGTGCGT...................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................ATATTTAACGACACGACAAAGAG........................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................AATATTTAACGACACGACAAAGAA........................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................GTATGGCTCTCCTCCGGCAGA.......................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................GCTAATATTTAACGACACGACAAAGAG........................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TGAGTTGCTGCGGACACCGCAACT......................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TGCGTGCGAGAGAGACAGAAAAT.................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................GCGGACACCGCAACTCTACGGTTATAC............................................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCATATTTAACGACACGACAAAGA............................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATTTAACGACACGACAAAGAGTGCG....................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................AACTCTACGGTTATACCCG.......................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGACACGACAAAGAGTGCGTGC.................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TAACGACACGACAAAGAGTG......................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAAGTCAGTATGGCTCTCCTCCGG.............................................................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................TGTGAGTTGCTGCGGACACCGCA............................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................AGACAGAAAATCAGTCTGAGCGTG....... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................TAAGTAAAAACGAGTGGGAACC.................................................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................CGGACACCGCAGCTCTACGG................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GACGCCGCTAATATTTAACGACACG................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAAAGAGTGCGTGCGAGAGAGACAGAA....................... 27 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................AAAATCAGTCTGAGCGTGA...... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CGTGCGAGAGAGACAGAAAA..................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................TAAAAACGAGGGGGAACGTTG................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCACTAAGACCCGGACGTCATACCGTGCCGGTAGCTGTACACCTCGGACCCACTCACACACCCTAAAAGTCTCGGGTGAAAATTAATTTTTGCTCCCCCTTGCAACACTCAACGACGCCTGTGGCGTTGAGATGCCAATATGGGCTATGATTCAGTCATACCGAGAGGAGGCCGTCTGCGGCGATTATAAATTGCTGTGCTGTTTCTCACGCACGCTCTCTCTGTCTTTTAGTCAGACTCGCACTNNNNNN
*****************************************************************************(((...((((...(((((...))))))))).)))(((((((..(((.....))).)))))))...........***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 GSM343916
embryo
 V112
male body		 M059
embryo
 SRR902011
testis
 GSM444067
head
 M062
head
 SRR902012
CNS imaginal disc
 M022
male body
.........................................................................................TTGCTCCCCCTTGCAACACTCAACGAC....................................................................................................................................... 27 0 20 6.60 132 132 0 0 0 0 0 0 0 0 0
....................................................................................................TGCAACACTCAACGACGCCTGTGGCGT............................................................................................................................ 27 0 20 3.65 73 73 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGAGATGCCAATATGGGCTATGATTCAG................................................................................................ 28 0 20 2.95 59 0 0 0 59 0 0 0 0 0 0
.........................................................................................................................................................................................TATAAATTGCTGTGCTGTTTCT............................................ 22 0 20 2.40 48 0 48 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCACGCTCTCTCTGTCTTTTA.................... 21 0 20 1.95 39 39 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCGATTATAAATTGCTGTGCTGT................................................ 24 0 20 1.85 37 0 0 31 0 6 0 0 0 0 0
.................................................................................................................................................................................GCGGCGATTATAAATTGCTGTGCTGT................................................ 26 0 20 1.15 23 0 0 23 0 0 0 0 0 0 0
................................................................................................................................................................................AGCGGCGATTATAAATTGCTGTGCTGT................................................ 27 1 20 0.95 19 19 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCGATTATAAATTGCTGTGCTGTT............................................... 25 0 20 0.90 18 18 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTCACGCACGCTCTCTCTGTCTT....................... 23 0 20 0.85 17 17 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCGAGTATAAATTGCTGTGCTGT................................................ 24 1 20 0.55 11 11 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGATTATAAATTGCTGTGCTGTTT.............................................. 24 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGATGCCAATATGGGCTATGATTCAG................................................................................................ 26 0 20 0.45 9 0 0 9 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGATTATAAATTGCTGTGCTGT................................................ 22 0 20 0.40 8 0 0 0 0 8 0 0 0 0 0
..................................................................................................................................AATGCCAATATGGGCTATGATTCAGT............................................................................................... 26 1 20 0.40 8 7 1 0 0 0 0 0 0 0 0
................................................................AAAAGTCTCGGTTCAGAATT....................................................................................................................................................................... 20 3 20 0.35 7 1 6 0 0 0 0 0 0 0 0
......................................................................................................................................CCAATATGGGCTATGATTCAGTCAT............................................................................................ 25 0 20 0.35 7 0 7 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGAGGAGGCCGTCTGCGGCGA................................................................... 21 0 20 0.35 7 7 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGAGTATAAATTGCTGTGCTGTTTCT............................................ 26 1 20 0.30 6 6 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGCGATTATAAATTGCTGTGCTGTTT.............................................. 27 0 20 0.25 5 0 0 0 0 0 5 0 0 0 0
...............................................................................AAAGTAATTTTTGCTCCACCTTGCAA.................................................................................................................................................. 26 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGAGATGCCAATATGGGCTATGATTCAG................................................................................................ 28 1 20 0.25 5 5 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCGGCGAGTATAAATTGCTGTGCTGT................................................ 26 1 20 0.25 5 0 5 0 0 0 0 0 0 0 0
..................................................................................................................................GATGCCAATATGGGCTATTATTCAGT............................................................................................... 26 1 20 0.20 4 0 4 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGCGATTATAAATTGCTGTGCT.................................................. 23 0 20 0.20 4 0 0 0 0 0 4 0 0 0 0
....................................................................................................................................TGCCAATATGGGCTATGATTCAG................................................................................................ 23 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGTCTTTTAGTCAGACTCGC......... 20 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AGGCCGTCTGCGGCGATTATAAATT.......................................................... 25 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTTGAGATGCCAATATGGGCT......................................................................................................... 21 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCGGCGATTATAAATTGCTGTGCTGT................................................ 26 1 20 0.15 3 1 0 0 0 2 0 0 0 0 0
.......................................................................................................AACACTCAACGACGCCTGT................................................................................................................................. 19 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTGCTGTGCTGTTTCTAATG........................................ 21 2 20 0.15 3 0 0 0 0 0 0 0 0 3 0
.....................................................................................................................................................................................CGATTATAAATTGCTGTGC................................................... 19 0 20 0.15 3 1 0 0 0 0 2 0 0 0 0
................................................................................................................................................................................AGCGGCGATTATAAATTGCTGTGCTG................................................. 26 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCGATTATAAATTGCTGTGCTGTTTCT............................................ 28 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CGAGAGGAGGCCGTCTGCGGCGATT................................................................. 25 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
..................................................................................................................................................................................TGGCGATTATAAATTGCTGTGCTGT................................................ 25 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGATTATAAATTGCTGTGCT.................................................. 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCAGTCATACCGAGAGGAGGCCGTCT.......................................................................... 26 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
.....................................................................................................................................................................................CGATTATAAATTGCTGTGCTGTT............................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................TGGGCTATGATTCAGT............................................................................................... 16 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CTGCGGCGATTATAAATTGCTGTGCT.................................................. 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCGATTATAAATCGCTGTGCTGT................................................ 24 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGATGCCAATATGGGCTACGATTCAG................................................................................................ 26 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................CACTCAACGACGCCTGTGGCGT............................................................................................................................ 22 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................................................................CGGCGATTATTAATTGCTGTGCTGT................................................ 25 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................................................................TGGCGATTATAAATTGCTGTGCTG................................................. 24 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATTATAAATTGCTGTGCTGTT............................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTCTGCGGCGATTATAAATTG......................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................CGAGATGCCAATATGGGCTATGATTCAG................................................................................................ 28 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................GATGCCAATATGGGCTATGA..................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCGGCGATTATTAATTGCTGTGCTG................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................GCCTGTGGCGTTGAGATGC.................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................GATGCCAATATGGGCTATGATTCAA................................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGCGAGTATAAATTGCTGTGCTGT................................................ 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................GCGGCGATTATAAATTGCTGTGCTGC................................................ 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GCCATTATAAATTGCTATGCTGT................................................ 23 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................GAACCCAATATGCGCTATGATTCAG................................................................................................ 25 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................CCGGCGATTATAAATTGCTGTGCTGT................................................ 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................AAATATAAATTGCTGTGCTGT................................................ 21 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGCGATTATAAATTGCTGT..................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CGCCTGTGACGTTGAGATGCC................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................CGATTATAAATTGCTGTGTTGT................................................ 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................TGCCAATACGGGCTATGATTCAG................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................CCTGTGACGTTGAGATGCCAAT................................................................................................................ 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................TGTGGCGTTGAGGTGCCAATG............................................................................................................... 21 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................GTCTGTGGCGATTATAAATTGCTGT..................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................GCCTGTGGCGTTGAGACGCC................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGCGATTATAAATTGCTGTGCTGG................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGCGGCGATTATAAATTGCTGTGCTG................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCAATATGGGCTATGATT................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GCGATTATAAATTGCTGTACTGT................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CGATTATTAATTGCTGTGCTGT................................................ 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGCGGCGATTATAAATTG......................................................... 18 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................CCGTCTGCGGCGATTATAAAT........................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................ACGCACGCTCTCTCTGTCTTT...................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................TATAAATTGCTGCGCTGTTTCT............................................ 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCGATTATAAATTGCTGTGCTT................................................. 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................GACGCCTGTGGCGTTGAGAT...................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GATTATAAATTGCTGTGCTGTTT.............................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCTATTATAAATTGCTGTGCT.................................................. 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................ACGCTCTCTCTGTCTTTTCGTCAGACT............ 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................GGCGTTGAGGTGCCAATGTGG............................................................................................................ 21 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................GGAGGCCGTCTGTGGCGATTATAAAT........................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................GATGCCACTATGGGCTATGATTCAG................................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AGATTATAAATTGCTGTGCTGTTTCT............................................ 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................CGTTGAGGTGCCAATATGGGC.......................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................CTGCGGCGATTATTAATTGCTGTGCTGT................................................ 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................CGGCGTTGGGATGCCAATATG............................................................................................................. 21 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................GTCTGCGGCGATTATAAATTGCTGTGCT.................................................. 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................CCTGTTGCGTTGAGGTGCC................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................ATGATTCAGTCATACCGAGAGGAGGCCGT............................................................................ 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCTCTCTCTGTCTTTTAGTC................. 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................ATGCCAATATGGGCTATGCTTCAG................................................................................................ 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................ATTGCTGTGCTGTTTCTCACG........................................ 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................CGGCGATTATAAATTGCTGTGCTGTT............................................... 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................CAGTCATACCGAGAGGAGGCCGT............................................................................ 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................CGGCGATTATAAATTGCTGTGCTCTT............................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCGATTATAAATTGCTGTG.................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................CAATATGGGCTATGATTCAGT............................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................CCGCCTGTGGCGTTGAAATGCC................................................................................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................CCAATATGGGCTATGATTAAGTCAT............................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGACGCCAATATGGGATATGATTCAG................................................................................................ 26 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGCGATTATAAATTGCTGTGCTC................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group4:5440088-5440338 + dps_1687 GGTGATTCTGGGCCTGCAGTATGGCACGGCCATCGACATGTGGAGCCTGGGTGAGTG--TGTGG-----------------GATTTTCAGAGCCCACTTTTAATTAA--------------AAACGAGGGGGAACGTTGTGAGTTGCTGCGGACACCGCAACTCTACGGTTATACCCGATACTAAGTCAG---------TATGGCTCTCCTCCGGCAGACGCCGCTAATATTTAACG--ACACGACAAAGAGTGCGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGANNNNNN
droPer2 scaffold_56:419967-420189 - AGTATTTCTCGGCCATTGATTTAG--------------------AGTCAGGTTTCTA--TC---------------------------------AGATTTTAATGAGGGAATCAGATATTGAAACGAGGGGGAACGTTGTGAGTTGCTGCGGACACCGCAACTCTACAGTTATACCCGATACTAAGTCAG---------TATGGCTCTCCTCCGGCAGACGCCGCTAATATTAAACG--ACACGACAAAGAGTGCGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGA------
droWil2 scf2_1100000004521:1286085-1286140 + GGTGATTCTAGGACTGCAATATGGCACAGCCATCGATATGTGGAGCTTAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12723:1345403-1345501 - GGTGATACTGGGTCTGCAATATGGCACCGCCATTGACATGTGGAGCTTGGGTGAGTA--TATATCTATGTGGCGTCGGTGGGG--------ATTTGATTTTAATTAA--------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:10030605-10030696 + GGTGATACTGGGCCTGCAATATGGCACCGCCATCGACATGTGGAGCTTGGGTAAGTG--AATTGAT---TGG---AAGTGGGC--------TTTCGATTTTAATTAA--------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:4724472-4724557 - GGTGATACTTGGACTGCAATATGGCACCGCCATTGACATGTGGAGCTTGGGTGAGTC--CATGGAG---TGA---A---------------ACTTGATTTTAATTAA--------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:11595505-11595586 + GGTGATTCTCGGACTACAATACGGCACCGCCATCGACATGTGGAGCTTAGGTGAGTG--TCTTT---------------------------GTCCACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396572:1254142-1254223 + GGTGATTCTCGGACTACAATACGGCACCGCCATCGACATGTGGAGCTTAGGTGAGTG--TCCTT---------------------------GTTCACTTTTAATTAA--------------AAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302405:133223-133298 - GGTGATTCTCGGCCTGCAGTACGGCACCGCCATCGACATGTGGAGCCTGGGTGAGTG--TC---------------------------------CACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453843:613100-613177 + GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCCTGGGTGAGTGTGTC---------------------------------CGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491046:596877-596952 - GGTGATTCTCGGCCTGCAGTACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TC---------------------------------CACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777923:3896-3971 + GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGACATGTGGAGCTTGGGTGAGTG--TC---------------------------------CACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302408:2385462-2385543 + GGTGATTCTTGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCTTGGGTGAGTG--TGTGC---------------------------GCCCACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000410580:106083-106242 - AGTTT------------------------------------------------------------------------------------------ATTTTTATTTAA--------------AAACAAGAGAGAACGCTAT-AGTCGGTTTGGTGTCC-CGACTATCT---AATACCCGTCACTCAGCTAAAGGGAGTGGTAACGCTG-TGTCGGGTTGGTGTCCCGACTAATAATCGTAACTCAGCTAA-AGGGAGTGCGAGGGAGATAGA------------------------
droEug1 scf7180000409452:754061-754136 - GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCTTGGGTGAGTG--TC---------------------------------CAATTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:14188838-14188913 - GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:13769967-13770042 - GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_3:446419-446494 - GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:14286850-14286925 - GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:11278579-11278654 + GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGTGATTCTGGGCCTGCAGTATGGCACGGCCATCGACATGTGGAGCCTGGGTGAGTG--TGTGG-----------------GATTTTCAGAGCCCACTTTTAATTAA--------------AAACGAGGGGGAACGTTGTGAGTTGCTGCGGACACCGCAACTCTACGGTTATACCCGATACTAAGTCAG---------TATGGCTCTCCTCCGGCAGACGCCGCTAATATTTAACG--ACACGACAAAGAGTGCGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGANNNNNNSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................CGTTGTGAGTTGCTGCGGAC.............................................................................................................................................20206.35127012700000000
............................................................................................................................................GAGTTGCTGCGGACACCGCAAC.....................................................................................................................................22204.108208200000000
..........................................................................................................................................................................................TCAG---------TATGGCTCTCCTCCGGC...............................................................................21203.206405500000090
...................................................................................................................................................................................TACTAAGTCAG---------TATGGCTCTCCTCC..................................................................................25202.855700005700000
...................................................................................................................................................................................TACTAAGTCAG---------TATGGCTCTCC.....................................................................................22201.803600000003600
.....................................................................................................................................................CGGACACCGCAACTCTACGG..............................................................................................................................20201.503075000000180
......................................................................................................................................................................................TAAGTCAG---------TATGGCTCTCCTCCGGC...............................................................................25201.3026016000001000
..............................CATCGACATGTGGAGCCTGGG....................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................GTGAGTTGCTGCGGACACCG.........................................................................................................................................20200.901800000018000
.....................................................................................................................................................CGGACACCGCAACTCTACGGTTATAC........................................................................................................................26200.751500000001500
.............................................................................................................................................................................................G---------TATGGCTCTCCTCCGGCA..............................................................................19200.601201200000000
........................................................................................................................................TTGTGAGTTGCTGCGGACA............................................................................................................................................19200.551100000011000
.................................................................................................................................................................................................................................TAATATTTAACG--ACACGACAAAGA............................................24200.55110000000650
.................................................................................................................................................................................................................................................ACGACAAAGAGTGCGTGCGAGAGAG.............................25200.50100900000100
.......................................................................................................................................................................................................................................TTAACG--ACACGACAAAGAGTG.........................................21200.4080600002000
..............................................................................................................................................................................................................................................................CGTGCGAGAGAGACAGAAAAT....................21200.4080000000350
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGAG...........................................22200.4080001000070
....................................................................................................................................................GCGGACACCGCAACTCTACGG..............................................................................................................................21200.3570000000070
................................................................................................................................................TGCTGCGGACACCGCAACTCTACGGT.............................................................................................................................26200.3570000000070
.......................................................................................................................................................................................................................................................AAGAGTGCGTGCGAGAGAG.............................19200.3570000007000
.........................................................................................................................................................................................................................................................................GACAGAAAATCAGTCTGAGCG.........21200.3570000007000
............................................................................................................................................................CGCAACTCTACGGTTATACCC......................................................................................................................21200.3060600000000
...................................................................................................................................................................................................................................................GACAAAGAGTGCGTGCGAGAG...............................21200.3060600000000
..........................................................................................................................................................................................................................................................AGTGCGTGCGAGAGAGACAG.........................20200.3060600000000
..................................................................................................................................................................................................................................................CGACAAAGAGTGCGTGCGAGT................................21200.2550500000000
...........................................................................................................................................................................................CAG---------TATGGCTCTCCTCCGGCAGACG..........................................................................25200.2550000000050
.................................................................................................................................................................................................................................TAATATTTAACG--ACACGACAAAGAGT..........................................26200.2550410000000
.....................................................................................................................................................................................................................................ATTTAACG--ACACGACAAAGAG...........................................21200.2550300002000
..........................................................................................................A--------------AAACGAGGGGGAACGTTGTG..........................................................................................................................................................21200.2040400000000
............................................................................................................................................................................................................................................................................AGAAAATCAGTCTGAGCGTG.......20200.2040000000040
.......................................................................................................................................................................................AAGTCAG---------TATGGCTCTCCTCCGG................................................................................23200.2040000000400
...............................................................................................................................................................................CCGATACTAAGTCAG---------TATGG...........................................................................................20200.2040100000030
.....................................................................................................................................................................................................................................................CAAAGAGTGCGTGCGAGAGAGACA..........................24200.2040400000000
..........................................................................................................................................................................................................................................................................ACAGAAAATCAGTCTGAGCG.........20200.1530000000030
......................................................................................................................................................................................TAAGTCAG---------TATGGCTCTCCTCCGGCAG.............................................................................27200.1530300000000
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGAA...........................................22200.1530300000000
...................................................................................................................................................................................TACTAAGTCAG---------TATGGCTCTCCTC...................................................................................24200.1530003000000
......................................................................................................................................................................................................................................................AAAGAGTGCGTGCGAGAGAGA............................21200.1530000000030
.................................................................................................................................................................................................................................................ACGACAAAGAGTGCGTGCGAGAGA..............................24200.1530000000030
.................................................................................................................................................................................................................................TAATATTTAACG--ACACGACAA...............................................21200.1530000000030
...................................................................................................................................................TGCGGACACCGCAACTCTACGG..............................................................................................................................22200.1530000000030
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGAGT..........................................23200.1530010000200
............................................................................................................................................................................TACCCGATACTAAGTCAG---------TATG............................................................................................22200.1530300000000
.....................................................................................................................................................................................................................................ATTTAACG--ACACGACAAAGA............................................20200.1020100000010
..............................................................................................................................................................................................................................CGCTAATATTTAACG--ACACGACAAAGAG...........................................28200.1020110000000
.............................................................................................................................GAGGGGGAACGTTGTGAGTTGC....................................................................................................................................................22200.1020200000000
.....................................................................................................................................................................................CTAAGTCAG---------TATGGCTCTCCTCCGGC...............................................................................26200.1020200000000
..................................................................................................................................................................................................................................AATATTTAACG--ACACGACAAAGAG...........................................24200.1020000000020
.............................................................................................................................................................................ACCCGATACTAAGTCAG---------TATGGCTCT.......................................................................................26200.1020200000000
................................................................................................................................GGGGAACGTTGTGAGTTG.....................................................................................................................................................18200.1020200000000
...................................................................................................................................................................................................................................................GACAAAGAGTGCGTGCGAGAGAGAC...........................25200.1020000000200
...........................................................................................................................................................................................................................................................................CAGAAAATCAGTCTGAGCGTG.......21200.1020000000200
......................................................................................................................................................................................................................................TTTAACG--ACACGACAAAGAG...........................................20200.1020200000000
........................................................................................................................................................................................................................................................AGAGTGCGTGCGAGAGAGAC...........................20200.1020000002000
................................................................................................................................................................................................................................................................TGCGAGAGAGACAGAAA......................17200.1020000000200
.................................................................................................................................................................CTCTACGGTTATACCCGATAC.................................................................................................................21200.1020200000000
...................................................................................................................................................TGCGGACACCGCAACTCTACGGTT............................................................................................................................24200.1020200000000
...................................................................................................................................................................................TACTAAGTCAG---------TATGGCTCTA......................................................................................21200.1020000000020
...................................................................................................................................................................................................................................ATATTTAACG--ACACGACAAAG.............................................21200.1020200000000
................................................................................................................................................................................................................................................................TGCGAGAGAGACAGAAAATC...................20200.1020000000020
.....................................................................................................................................................................................................................................................CAAAGAGTGCGTGCGAGAGAGAC...........................23200.1020020000000
......................................................................................................................................................................................................................................................AAAGAGTGCGTGCGAGAGAGACAG.........................24200.0510100000000
............................................................................................................................................................................................................CTCTCCTCCGGCAGACGCC........................................................................19200.0510000001000
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGAGAA.........................................24200.0510000000010
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGG............................................21200.0510100000000
..............................................................................................................................................................CAACTCTACGGTTATACCCGAT...................................................................................................................22200.0510000010000
.......................................................................................................................................................................................................TATGGCTCTCCTCCGGCAGA............................................................................20200.0510000000001
.....................................................................................................................................................................................................................................ATTTAACG--ACACGACAAAGAGTGC........................................24200.0510100000000
..............................................................................................................................................................................................................................CGCTAATATTTAACG--ACACGACAAA..............................................25200.0510100000000
......................................................................................................................................................................................................................................TTTAACG--ACACGACAAAGAGTGCG.......................................24200.0510100000000
.................................................................................................................................................................................................................................TAATATTTAACG--ACACGACAAAGAGTG.........................................27200.0510100000000
..................................................................................................................................................CTGCGGACACCGCAACTCTACGGT.............................................................................................................................24200.0510100000000
...........................................................................................................................................................................................................................................CG--ACACGACAAAGAGTGCG.......................................19200.0510010000000
.......................................................................................................................................................................................................................CAGACGCCGCTAATATTTA.............................................................19200.0510100000000
.................................................................................................................................................................................................................................................................GCGAGAGAGACAGAAAATC...................19200.0510000010000
.........................................................................................................................................................................................................................................................GAGTGCGTGCGAGAGAGAC...........................19200.0510001000000
.................................................................................................................................................................................................................................TAATATTTAACG--ACACGACAAAG.............................................23200.0510000000100
.....................................................................................................................................................................................................................................ATTTAACG--ACACGACAAAGAGTG.........................................23200.0510100000000
.....................................................................................................................................................................................................................GGCAGACGCCGCTAATATTTAACG--A.......................................................25200.0510100000000
.....................................................................................................................................ACGTTGTGAGTTGCTGCGG...............................................................................................................................................19200.0510000010000
.................................................................................................................................................GCTGCGGACACCGCAACTCTACGGTTA...........................................................................................................................27200.0510000000100
.................................................................................................................................................................................................................................................ACGACAAAGAGTGCGTGCGAGAGAGAC...........................27200.0510000000100
.....................................................................................................................................................CGGACACCGCAACTCTACGGT.............................................................................................................................21200.0510000000100
.......................................................................................................................................................................................................................CAGACGCCGCTAATATTTAACG--ACAC....................................................26200.0510100000000
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGT............................................21200.0510010000000
..........................................................................................................................................................................................................................................ACG--ACACGACAAAGAGTGCGT......................................21200.0510000001000
........................................................................................................................................................................................................................................................................AGACAGAAAATCAGTCTGAGCGT........23200.0510000100000
...............................................................................................................................................................................................................................................ACACGACAAAGAGTGCGTGCG...................................21200.0510000010000
...........................................................................................................................................................................................................................................................................CAGAAAATCAGTCTGAGCGTGA......22200.0510000001000
.............................................................................................................................................................................................................................CCGCTAATATTTAACG--ACACG...................................................21200.0510100000000
.......................................................................................................................................................................................................................................................AAGAGTGCGTGCGAGAGAGACAGA........................24200.0510000001000
..........................................................................................................................................................................................................................................................AGTGCGTGCGAGAGAGACAGAA.......................22200.0510000001000
.................................................................................................................................................................................................................................TAATATTTAACG--ACACGACA................................................20200.0510100000000
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGAGTGC........................................25200.0510010000000
.................................................................................................................................GGGAACGTTGTGAGTTGCTGCG................................................................................................................................................22200.0510010000000
..............................................................................................................................................................................................................CTCCTCCGGCAGACGCCGCTA....................................................................21200.0510000010000
........................................................................................................TAA--------------AAACGAGGGGGAACGTTGTGA.........................................................................................................................................................24200.0510100000000
..............................................................................................................................................................CAACTCTACGGTTATACCCGA....................................................................................................................21200.0510000100000
...............................................................................................................................................................................................................................GCTAATATTTAACG--ACACGAA.................................................21200.0510000000010
....................................................................................................................................................................................................................................TATTTAACG--ACACGACAAAGA............................................21200.0510000000100
............................................................................................................................................................................................................................................................TGCGTGCGAGAGAGACAGAAAATC...................24200.0510000001000
................................................................................................................................................................................................................CCTCCGGCAGACGCCGCTAA...................................................................20200.0510100000000
......................................................................................................................................................................................................................................TTTAACG--ACACGACAAAGAGTGCGT......................................25200.0510010000000
...................................................................................................................................................................................................................................ATATTTAACG--ACACGACAAAGAG...........................................23200.0510010000000
..................................................................................................................................................................................................................................AATATTTAACG--ACACGACAAAGAA...........................................24200.0510000000100
.............................................................................................................................................................................................G---------TATGGCTCTCCTCCGGCAGA............................................................................21200.0510000010000
...............................................................................................................................................................................................................................GCTAATATTTAACG--ACACGACAAAGAG...........................................27200.0510000000010
...........................................................................................................................................TGAGTTGCTGCGGACACCGCAACT....................................................................................................................................24200.0510000001000
............................................................................................................................................................................................................................................................TGCGTGCGAGAGAGACAGAAAAT....................23200.0510000000100
....................................................................................................................................................GCGGACACCGCAACTCTACGGTTATAC........................................................................................................................27200.0510000000100
.....................................................................................................................................................................................................................................ATTTAACG--ACACGACAAAGAGTGCG.......................................25200.0510100000000
...............................................................................................................................................................AACTCTACGGTTATACCCG.....................................................................................................................19200.0510100000000
...........................................................................................................................................................................................................................................CG--ACACGACAAAGAGTGCGTGC....................................22200.0510010000000
........................................................................................................................................................................................................................................TAACG--ACACGACAAAGAGTG.........................................20200.0510100000000
......................................................................................................................................................................................TAAGTCAG---------TATGGCTCTCCTCCGG................................................................................24200.0510000001000
.........................................................................................................................................TGTGAGTTGCTGCGGACACCGCA.......................................................................................................................................23200.0510010000000
........................................................................................................................................................................................................................................................................AGACAGAAAATCAGTCTGAGCGTG.......24200.0510100000000
.........................................................................................................................................................................................................................GACGCCGCTAATATTTAACG--ACACG...................................................25200.0510000000100
.....................................................................................................................................................................................................................................................CAAAGAGTGCGTGCGAGAGAGACAGAA.......................27200.0510010000000
..............................................................................................................................................................................................................................................................................AAAATCAGTCTGAGCGTGA......19200.0510000001000
..............................................................................................................................................................................................................................................................CGTGCGAGAGAGACAGAAAA.....................20200.0511000000000
........................................................................................................TAA--------------AAACGAGGGGGAACGTTG............................................................................................................................................................21200.0510100000000
droPer2
AGTATTTCTCGGCCATTGATTTAG--------------------AGTCAGGTTTCTA--TC---------------------------------AGATTTTAATGAGGGAATCAGATATTGAAACGAGGGGGAACGTTGTGAGTTGCTGCGGACACCGCAACTCTACAGTTATACCCGATACTAAGTCAG---------TATGGCTCTCCTCCGGCAGACGCCGCTAATATTAAACG--ACACGACAAAGAGTGCGTGCGAGAGAGACAGAAAATCAGTCTGAGCGTGA------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................TATTAAACG--ACACGACAAAGAGTGCGT......................................27200.102020000
.............................................................................................................................................................................................................................................................................GAAAATCAGTCTGAGCGTGA------20200.051000010
droWil2
GGTGATTCTAGGACTGCAATATGGCACAGCCATCGATATGTGGAGCTTAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GGTGATACTGGGTCTGCAATATGGCACCGCCATTGACATGTGGAGCTTGGGTGAGTA--TATATCTATGTGGCGTCGGTGGGG--------ATTTGATTTTAATTAA--------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................TTGACATGTGGAGCTTGG.....................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000001000000000000000000000000
.........................ACCGCCATTGACATGTGGAGCTTGGGC...................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
........TGGGTCTGCAATATGGCA.............................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................TATGGCACCGCCATTGACATGTGGAGC.........................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
............................GCCATTGACATGTGGAGCTTGGGC...................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
GGTGATACTGGGCCTGCAATATGGCACCGCCATCGACATGTGGAGCTTGGGTAAGTG--AATTGAT---TGG---AAGTGGGC--------TTTCGATTTTAATTAA--------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGTGATACTTGGACTGCAATATGGCACCGCCATTGACATGTGGAGCTTGGGTGAGTC--CATGGAG---TGA---A---------------ACTTGATTTTAATTAA--------------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................AATATGGCACCGCCATTGAC..................................................................................................................................................................................................................................................................2011.00110
...GATACTTGGACTGCAATATGGCACCG..........................................................................................................................................................................................................................................................................2611.00110
droAna3
GGTGATTCTCGGACTACAATACGGCACCGCCATCGACATGTGGAGCTTAGGTGAGTG--TCTTT---------------------------GTCCACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................CCGCCATCGACATGTGGAGCTTAGG....................................................................................................................................................................................................................................................2511.001100000
.........CGGACTACAATACGGCACCGCCATC.....................................................................................................................................................................................................................................................................2511.001100000
droBip1
GGTGATTCTCGGACTACAATACGGCACCGCCATCGACATGTGGAGCTTAGGTGAGTG--TCCTT---------------------------GTTCACTTTTAATTAA--------------AAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGTGATTCTCGGCCTGCAGTACGGCACCGCCATCGACATGTGGAGCCTGGGTGAGTG--TC---------------------------------CACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCCTGGGTGAGTGTGTC---------------------------------CGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGTGATTCTCGGCCTGCAGTACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TC---------------------------------CACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGACATGTGGAGCTTGGGTGAGTG--TC---------------------------------CACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGTGATTCTTGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCTTGGGTGAGTG--TGTGC---------------------------GCCCACTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGTTT------------------------------------------------------------------------------------------ATTTTTATTTAA--------------AAACAAGAGAGAACGCTAT-AGTCGGTTTGGTGTCC-CGACTATCT---AATACCCGTCACTCAGCTAAAGGGAGTGGTAACGCTG-TGTCGGGTTGGTGTCCCGACTAATAATCGTAACTCAGCTAA-AGGGAGTGCGAGGGAGATAGA------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCTTGGGTGAGTG--TC---------------------------------CAATTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................GCACAGCCATCGATATGTGGAGCTTGG.....................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATCGATATGTGGAGCTTGG.....................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000100000000000000000
................................TCGATATGTGGAGCTTGG.....................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001100000000000
.......................GCACAGCCATCGATATGTGGAGC.........................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CGATATGTGGAGCTTGGGC...................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
.....TTCTCGGCCTGCAATACGGCACA...........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................CAGCCATCGATATGTGGAGC.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATCGATATGTGGAGCTTGGGC...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATGTGGAGCTTGGGTGAGTG--TA---------------------------------A........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CATCGATATGTGGAGCTTGGG....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTCGGCCTGCAATACGGCACAGCCA.......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCGGCCTGCAATACGGCACAGCCATC.....................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCACAGCCATCGATATGTGGAGCT........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CACAGCCATCGATATGTGGAGC.........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CTGCAATACGGCACAGCCATCGA...................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATTCTCGGCCTGCAATACGGC..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TGCAATACGGCACAGCCATCGATATGTGGA...........................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTT...................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCCATCGATATGTGGAGCTTGGG....................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GATTCTCGGCCTGCAATACG................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATACGGCACAGCCATCGATATGTGGAGC.........................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................ACAGCCATCGATATGTGGAGCTTGG.....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCCATCGATATGTGGAGCTTGGGC...................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TACGGCACAGCCATCGATATGTGGAGC.........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCCATCGATATGTGGAGC.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCCATCGATATGTGGAGCTTGGGCT..................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................ACGGCACAGCCATCGATATGTGGAGCTT.......................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCTCGGCCTGCAATACGGCACAGCCATC.....................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CGATATGTGGAGCTTGG.....................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................TCGATATGTGGAGCTTGG.....................................................................................................................................................................................................................................................1811.0010001
...............................ATCGATATGTGGAGCTTGGGC...................................................................................................................................................................................................................................................2111.0010010
.............................CCATCGATATGTGGAGCT........................................................................................................................................................................................................................................................1811.0010010
droYak3
GGTGATTCTCGGCCTGCAATACGGCACAGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GGTGATTCTCGGCCTGCAATACGGCACCGCCATCGATATGTGGAGCTTGGGTGAGTG--TA---------------------------------AGCTTTTAATTAA--------------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................GATATGTGGAGCTTGGGC...................................................................................................................................................................................................................................................1811.0011000000

Generated: 05/18/2015 at 01:18 AM