ID:

dps_1580

 Coordinate:

4_group3:5953931-5954081 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-52.9 -52.9 -52.7

Flybase annnotation

exon [dpse_GLEANR_1901:1]; CDS [Dpse\GA25724-cds]; intron [Dpse\GA25724-in]

No Repeatable elements found

mature
  1. Unknown_group_302:612-631 -
  2. dps_1580  4_group3:5954007-5954026 -
  3. dps_148  Unknown_singleton_2799:11889-11908 -
  4. Unknown_singleton_2943:4909-4928 -
  5. Unknown_singleton_2052:1328-1347 -
  6. Unknown_singleton_2942:3708-3727 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCACTGGGGTTTCTTCGCTGATTCTGGCCTACAGCATCCGACGCTTATGGTGCTAGAGGGCTGCCACTCGGGGCACCTGGCCGAAGCCCTTGAGGTAGCTGCTGAAGGTAGAAATCCACCTGGCTCTGCCTTCTTTCCAGCGCCATAGGGTCTGAATGCCACCTTTCAAATGGATTTTTCTAGTGCTATTAACAGCGTGTACTTTTCTACTCGTATTTCCTCAGACCATAGAATGCCATGGAATACATTT
**************************************************(((((((((((.((((......))))))((((...((.(((((.(((.((((..(((((((((...((....)).)))))))))....))))))).))))).))....))))((........))....)))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902011
testis
 V112
male body		 GSM444067
head
 M062
head
.........................................................................................................AAGGTAGAAATCCACCTGGC.............................................................................................................................. 20 0 6 13.50 81 81 0 0 0 0 0
.........................................................................................................AAGGTAGAAATCCACCTGG............................................................................................................................... 19 0 6 6.33 38 38 0 0 0 0 0
........................................................................................................TAAGGTAGAAATCCACCTGGCAC............................................................................................................................ 23 2 6 1.00 6 6 0 0 0 0 0
....................................................................................................TGTCGAAGGTAGAAATCCACC.................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................................AAGGTAGAAATCCACCTG................................................................................................................................ 18 0 6 1.00 6 6 0 0 0 0 0
..........................................................................................................AGGTAGAAATCCACCTGGC.............................................................................................................................. 19 0 6 1.00 6 6 0 0 0 0 0
.........................................................................................................AAGGTAGAAATCCACCTGGCCC............................................................................................................................ 22 1 5 0.80 4 4 0 0 0 0 0
.........................................................................................................AAGGTAGAAATCCACCTGGCAA............................................................................................................................ 22 2 6 0.67 4 4 0 0 0 0 0
.........................................................................................................AAGGTAGAAATCCACCTGGCA............................................................................................................................. 21 1 6 0.67 4 4 0 0 0 0 0
........................................................................................................GAAGGTAGAAATCCACCTGGCC............................................................................................................................. 22 1 5 0.60 3 0 3 0 0 0 0
.........................................................................................................AAGGTAGAAATCCACCTGGCT............................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
...............................................................................................................GAAAGCTACCTGGCTCTGAC........................................................................................................................ 20 3 5 0.40 2 2 0 0 0 0 0
........................................................................................................CAAGGTAGAAATCCACCTGGC.............................................................................................................................. 21 1 6 0.33 2 1 1 0 0 0 0
..........................................................................................................AGGTAGAAATCCACCTGG............................................................................................................................... 18 0 6 0.33 2 2 0 0 0 0 0
.....................................................................................................................................CTTTCCGGCGACATATGGTC.................................................................................................. 20 3 5 0.20 1 0 0 0 0 1 0
.......................................................................................................CGAAGGTAGAAATCCACCTGGCC............................................................................................................................. 23 2 5 0.20 1 0 1 0 0 0 0
.........................................................................................................AAGGTAGAAATCCGCCTGGC.............................................................................................................................. 20 1 6 0.17 1 1 0 0 0 0 0
.......................................................................................................TTAAGGTAGAAATCCACCTGG............................................................................................................................... 21 1 6 0.17 1 1 0 0 0 0 0
..........................................................................................................AGGTAGAAATCCACCTGGCA............................................................................................................................. 20 1 6 0.17 1 1 0 0 0 0 0
...........................................................................................................GGTAGAAATCCACCTGGC.............................................................................................................................. 18 0 6 0.17 1 1 0 0 0 0 0
.......................................................................................................GGAAGGTAGAAATCCACCTGG............................................................................................................................... 21 1 6 0.17 1 0 1 0 0 0 0
.........................................................................................................AAGGTAGAAATCCACCTGGA.............................................................................................................................. 20 1 6 0.17 1 1 0 0 0 0 0
.........................................................................................................AAGGTACAAATCCACCTGGC.............................................................................................................................. 20 1 6 0.17 1 1 0 0 0 0 0
.........GTTTCATCGTTGATCCTGGC.............................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 1
............................................................................................GATGTAGCTGATGAAGATAGA.......................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0
.........................................................................GCACTTGGCGGAAGGCCTTG.............................................................................................................................................................. 20 3 10 0.10 1 0 0 0 1 0 0

Anti-sense strand reads

AGGTGACCCCAAAGAAGCGACTAAGACCGGATGTCGTAGGCTGCGAATACCACGATCTCCCGACGGTGAGCCCCGTGGACCGGCTTCGGGAACTCCATCGACGACTTCCATCTTTAGGTGGACCGAGACGGAAGAAAGGTCGCGGTATCCCAGACTTACGGTGGAAAGTTTACCTAAAAAGATCACGATAATTGTCGCACATGAAAAGATGAGCATAAAGGAGTCTGGTATCTTACGGTACCTTATGTAAA
**************************************************(((((((((((.((((......))))))((((...((.(((((.(((.((((..(((((((((...((....)).)))))))))....))))))).))))).))....))))((........))....)))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 GSM444067
head
 V112
male body		 GSM343916
embryo
...........AAGAAGCGACTAAGACCGGAT........................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
...........................................................................................................................................................................ACTTAAGAAGATCACGATAA............................................................ 20 2 2 0.50 1 0 1 0 0 0
.........................................................................................................................ACCGAGACGGAAGATAGGG............................................................................................................... 19 2 2 0.50 1 0 1 0 0 0
...................................GTCGGCTGCGGACACCACGAT................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0
................................................................................................................................................................................................................AAAACCATAAAGGAGTCTGGTA..................... 22 3 3 0.33 1 0 1 0 0 0
...........................................................................................................................CGAGCCGGTAGAGAGGTCGC............................................................................................................ 20 3 11 0.09 1 0 0 0 1 0
.......................................................................................................................................................AGAATTGGGGTGGAAAGTT................................................................................. 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:5953881-5954131 - dps_1580 TCCACTGGGGTTTCTTCGCTGATTCTGGCCTACAGCATCCGACGCTTATGGTGCTAGAGGGCTGCCACTCGGGGCACCTGGCCGAAGCCCTTGAGGTAGCTGCTGAAGGTAGAAATCCACCTGGCTCTGCCTTCTTTCCAGCGCCATAGGGTCTGAATGCCACCTTTCAAATGGATTTTTCTAGTGCTATTAACAGCGTGTACTTTTCTACTCGTATTTCCTCAGACCATAGAATGCCATGGAATACATTT
droPer2 scaffold_1:7441687-7441876 - ACCC----GGTCTCTTC---------------------------------------------------------CTCCTGGCCGAAGCGCTTGAGGTAGCTGCTGAAGGTAGAAATCCACCTGGCTCTGCCTTCTTTCCAGCGCCATAGGGTCTGAATGCCACCTTTCAAATGGATTTTTCTAGTGCTATTAACAGCGTGTCATTTTCTACTCGTATTTCCTCAGACCAGAGAATGCCATGGAATACATTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCCACTGGGGTTTCTTCGCTGATTCTGGCCTACAGCATCCGACGCTTATGGTGCTAGAGGGCTGCCACTCGGGGCACCTGGCCGAAGCCCTTGAGGTAGCTGCTGAAGGTAGAAATCCACCTGGCTCTGCCTTCTTTCCAGCGCCATAGGGTCTGAATGCCACCTTTCAAATGGATTTTTCTAGTGCTATTAACAGCGTGTACTTTTCTACTCGTATTTCCTCAGACCATAGAATGCCATGGAATACATTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................AAGGTAGAAATCCACCTGGC..............................................................................................................................20613.508108100000000
.........................................................................................................AAGGTAGAAATCCACCTGG...............................................................................................................................1966.333803800000000
.........................................................................................................AAGGTAGAAATCCACCTG................................................................................................................................1861.0060600000000
..........................................................................................................AGGTAGAAATCCACCTGGC..............................................................................................................................1961.0060600000000
.........................................................................................................AAGGTAGAAATCCACCTGGCAA............................................................................................................................2260.6740400000000
.........................................................................................................AAGGTAGAAATCCACCTGGCA.............................................................................................................................2160.6740400000000
........................................................................................................GAAGGTAGAAATCCACCTGGCC.............................................................................................................................2250.6030030000000
.........................................................................................................AAGGTAGAAATCCACCTGGCT.............................................................................................................................2120.5010100000000
..........................................................................................................AGGTAGAAATCCACCTGG...............................................................................................................................1860.3320200000000
..........................................................................................................AGGTAGAAATCCACCTGGCA.............................................................................................................................2060.1710100000000
...........................................................................................................GGTAGAAATCCACCTGGC..............................................................................................................................1860.1710100000000
.........................................................................................................AAGGTAGAAATCCACCTGGA..............................................................................................................................2060.1710100000000
droPer2
ACCC----GGTCTCTTC---------------------------------------------------------CTCCTGGCCGAAGCGCTTGAGGTAGCTGCTGAAGGTAGAAATCCACCTGGCTCTGCCTTCTTTCCAGCGCCATAGGGTCTGAATGCCACCTTTCAAATGGATTTTTCTAGTGCTATTAACAGCGTGTCATTTTCTACTCGTATTTCCTCAGACCAGAGAATGCCATGGAATACATTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................AAGGTAGAAATCCACCTGGC..............................................................................................................................2090.676060000
.........................................................................................................AAGGTAGAAATCCACCTGG...............................................................................................................................1990.444040000
.........................................................................................................AAGGTAGAAATCCACCTGGCAA............................................................................................................................2290.111010000
.........................................................................................................AAGGTAGAAATCCACCTG................................................................................................................................1890.111010000
..............................................................................TGGCCGAAGCGCTTGAGGTAGA.......................................................................................................................................................22120.081010000
..........................................................................................................AGGTAGAAATCCACCTGAA..............................................................................................................................19120.081010000
...............................................................................GGCCGAAGCGCTTGAGGTAG........................................................................................................................................................20120.081001000

Generated: 05/18/2015 at 01:02 AM