ID:

dps_1574

 Coordinate:

4_group3:5645197-5645374 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.8 -14.0 -13.9 -13.9

Flybase annnotation

exon [dpse_GLEANR_2543:1]; exon [dpse_GLEANR_2543:2]; CDS [Dpse\GA17793-cds]; CDS [Dpse\GA17793-cds]; intron [Dpse\GA17793-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACGTCACTGACATCGTCGGCTCTGGGGCTGTCGGCGGCTTCAAAGACAAGTGAGTGTGGTGGTACCTTTTAAGTCTGACCTGCGGTCCAAAGTCTAGCGCTCTCACCTGCCGCGACAGACAAAACGATTTCGCCACACCGTTACGACAGCTCTCCCCCCTTCTCCGTGCTGCTGTTTGTTTTGCAATTGTTAAATATTGTTACGTGCAATGTCTGCTCGCCTTTTAGATGGCGTCGTTGAGGAACAGCTGGGAGCCGACAGCTGGGAGGAGTTCTCG
**************************************************************......................((......((((((((............((((..............)))).....))))).)))......))..************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M062
head
 M059
embryo
......................CTGGGGCTGTCGGCGGCT.............................................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0
.................................................................................................................................................................................................................................................................GACCCCTGGGAGGAGTTATC. 20 3 5 2.00 10 6 4 0 0
................................................................................................................................................................................................................................................................CGACCCCTGGGAGGAGTT.... 18 2 4 1.25 5 4 1 0 0
.............................................................................................................................................................................................................................................................AGCCGACAGCTGGGAGGAGTTCTCG 25 0 1 1.00 1 1 0 0 0
..............................................................GTACCTTTTAAGTCTGACCTG................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................GCGTCGTTGAGGAACAGCTGG.......................... 21 0 1 1.00 1 1 0 0 0
...GTCACTGACATCGTCGGCTCTGG............................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
............................................AGACAAGTGAGTGTGGTGG....................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................TTGAGGAACAGCTGGGAGCC..................... 20 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................TTTAGATGGCGTCGTTGAGG................................... 20 0 1 1.00 1 1 0 0 0
......................................................................TAAGTCTGACCTGCGGTCCA............................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
.........GACATCGTCGGCTCTGGGGT......................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0
..........................................................................................................................................CCGTTACGACAGCTCTCCCC........................................................................................................................ 20 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................CTGCTCGCCTTTTAGATGGC............................................. 20 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................AGCCGACAGCTGGGAGGAGTT.... 21 0 1 1.00 1 1 0 0 0
.......CTGACATCGTCGGCTCTGGGGT......................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0
............................................................................................................................................................CCCCTTCTCCGTGCTGCTGTTT.................................................................................................... 22 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................TTGAGGAACAGCTGGGAGCCGA................... 22 0 1 1.00 1 1 0 0 0
............ATCGTCGGCTCTGGGGCTGTC..................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
...............GTCGGCTCTGGGGCTGTCGGCGG................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
...........................................................................................AGTCTAGCGCTCTCACCTGCCGC.................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
AACGTCACTGACATCGTCGGC................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
......................CTGGGGCTGTCGGCGGCGTCA........................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................AGGAACAGCTGGGAGCCGAC.................. 20 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................TGGTTGAGGAACAGCTGGGAGC...................... 22 1 1 1.00 1 0 0 1 0
...........CATCGTCGGCTCTGGGGCTGT...................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
..........................................................................................................................................................................................ATTGTTAAATGTTGTTACGTG....................................................................... 21 1 1 1.00 1 1 0 0 0
..........ACATCGTCGGCTCTGGGGC......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................CCGTGCTGCTGTTTGTTTTG.............................................................................................. 20 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................CGTGCTGCTGTTTGTTTTGC............................................................................................. 20 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................................GTCGTTGAGGAACAGCTGGG......................... 20 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................CGTCGTTGAGGAACAGCTGGGAG....................... 23 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................................TGAGGAACAGCTGGGAGCC..................... 19 0 1 1.00 1 0 1 0 0
.......................................................................................................................................................................................................GTTACGTGCAATGTCTGCTC........................................................... 20 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................CTTCTCCGTGCTGCTGTTTG................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......CTGACATCGTCGGCTCTGGGT.......................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................................TGAGGAACAGCTGGGAGCCG.................... 20 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................................CGACCCCTGGGAGGAGTTATC. 21 3 2 1.00 2 1 1 0 0
.................................................AGTGAGTGTGGTGGTACCTT................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0
..........................................AAAGACAAGTGAGTGTGGTGG....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.....................................................................................GTCCAAAGTCTAGCGCTCTCA............................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0
..........................................................................................AAGTCTAGCGCTCTCACCTG........................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
...............................................................TACCTTTTAAGTCTGACCTGC.................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................................................................................GACACCTGGGAGGAGTTATC. 20 2 1 1.00 1 0 1 0 0
.............................................................................................TCTAGCGCTCTCACCTGCCG..................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
..................................................................................................CGCTCTCACCTGCCGCGACAGTT............................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................................................GAACAGCTGGGAGCCGACA................. 19 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................................................GACAGCTGGGAGGAGTTCT.. 19 0 1 1.00 1 1 0 0 0
.......................TGGGGCTGTCGGCGGCGTC............................................................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0
............................................................................................GTCTAGCGCTCTCACCTGCCG..................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................CGTCGTTGAGGAACAGCTGGGA........................ 22 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................................GAGGAACAGCTGGGAGCCT.................... 19 1 1 1.00 1 0 1 0 0
..............................................................................................................................................TACGACAGCTCTCCCCCCTTC................................................................................................................... 21 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................CGTGCAATGTCTGCTCGCCT....................................................... 20 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................................................AATGGCGTCGTTGAGGAACA............................... 20 1 1 1.00 1 1 0 0 0
.............................................GACAAGTGAGTGTGGTGGT...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0
..........................................................................................AAGTCTAGCGCTCTCACCTGC....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.................................GGCGGCTTCAAAGACAAATGGC............................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1
...............................................................................................................................................................................................................................................GAGGAACAGCTGGGCGCC..................... 18 1 3 0.33 1 0 0 0 1
................................................................................................................................................................................TTGTTTTGCATTTTTTTAATATTG.............................................................................. 24 3 3 0.33 1 1 0 0 0
...............................................................................................................CGCGGCAGATAGAACGATTT................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................................................................ACAGCTCGGAGGAATTCTC. 19 2 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................................................................ACCCCTGGGAGGAGTTATC. 19 3 11 0.18 2 2 0 0 0
.................................................................................................................................................................TGTCCGGGCTGCTGTTTG................................................................................................... 18 2 15 0.07 1 1 0 0 0

Anti-sense strand reads

TTGCAGTGACTGTAGCAGCCGAGACCCCGACAGCCGCCGAAGTTTCTGTTCACTCACACCACCATGGAAAATTCAGACTGGACGCCAGGTTTCAGATCGCGAGAGTGGACGGCGCTGTCTGTTTTGCTAAAGCGGTGTGGCAATGCTGTCGAGAGGGGGGAAGAGGCACGACGACAAACAAAACGTTAACAATTTATAACAATGCACGTTACAGACGAGCGGAAAATCTACCGCAGCAACTCCTTGTCGACCCTCGGCTGTCGACCCTCCTCAAGAGC
************************************************************************************************************************......................((......((((((((............((((..............)))).....))))).)))......))..************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 V112
male body		 M062
head
 GSM444067
head
...............................................................................................................................................................................................................................................................GGCTGTCGACCCTCCTCAAGA.. 21 0 1 2.00 2 2 0 0 0 0
.TGCAGTGACTGTAGCAGCCGA................................................................................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0
...............................AGCCGCCGCAGTTTCTGTTCA.................................................................................................................................................................................................................................. 21 1 1 2.00 2 2 0 0 0 0
...............................TGCCGCCGAAGTTTCTGTTCAC................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
....AGTGACTGTAGCAGCCGAGACC............................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
..................................................................................CGCCAGGTTTCAGATCGCGA................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0
.................................CCGCCGCAGTTTCTGTTCACTC............................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................AGGGGGGAAGAGGCACGACGA........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................GAAGCGGTGTGGCAATGCTG.................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................TCGAGAGGGGGGAAGAGGCA.............................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................CACGACGACAAACAAAACGTT........................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..............GCAGCCGAGACCCCGACAGCC................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
..........................CCGACAGCCGCCGCAGTTT......................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0
....................................................................................................................................CGGTGTGGCAATGCTGTCGAG............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................AAGCGGTGTGGCAATGCTGT................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................AAAATCTATCGCAGCAAATTCT.................................. 22 3 1 1.00 1 1 0 0 0 0
...............................AGCCGCCGAAGTTTCTGTTCA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................ATCTACCGCAGCGACTCCTTG................................ 21 1 1 1.00 1 1 0 0 0 0
.............................................................................CTGGACGCCAGGTTTCAGATC.................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................GGCTGTCGACCCTCCTCAAG... 20 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................AGGCACGACGACAAACAAAAC.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................AGCAACTCCTTGTCGACCCTC....................... 21 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................................TGTCGACCCTCGGCTGTCGAC............. 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................CAGGTTTCAGATCGCGAGAG............................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................................TTACAGACGAGCGGAAAGTCT................................................. 21 1 1 1.00 1 1 0 0 0 0
..GCAGTGACTGGAGGTGCCGA................................................................................................................................................................................................................................................................ 20 3 4 0.50 2 1 0 1 0 0
...........................................................................................................................................................................CGACAAACAATACGCTAACA....................................................................................... 20 2 4 0.25 1 0 0 0 0 1
..GCAGTGACTGGAGGTGCCG................................................................................................................................................................................................................................................................. 19 3 20 0.10 2 2 0 0 0 0
.............................................................................................................................................................................................................................................................TCGGCTGTCGAACTTCTTCA..... 20 3 13 0.08 1 0 1 0 0 0
..GCAGTGACTGGAGGAGCGG................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:5645147-5645424 + dps_1574 AACGTC---A---CTGACATCGTCGGCTCTGGGGCTGTCGGCGGCTTCAAAGA---CAAGTGAGTGTGGTGGTACC---------------------------------TTTTAAGTCTGACCTGCGGTCCAAAGTCTAGCGC---------------------------------------TCTCACCTGCCGCGACAGACAA--AACGATTTCGCCACACCGTTACGACAGCTCTCCC-CCCTTCTCCGTGCTGC----------------------------------------------------------TG-------------T----------TTGTTTTGC--------------AATT-----------------GTTAAATATTGTTACGTGCAATGTCTG--------------------------CT-----CGCCTTTTAGATGGCGTCGTTG------------AGG---A---------ACAGCTGGGAGCCGACAGCTGGGAGGAGTTCTCG
droPer2 scaffold_1:7136184-7136402 + AACGTC---A---CTGACATCGTCGGCTCTGGGGCTGTCGGCGGCGTCAAAGA---CAAGTGAGTGTGGTGGTACC---------------------------------TTTTAAGTCTGACCTGCGGTCCAAAGTCTAGCGC---------------------------------------TCTCACCTGCCGCGACAGACAA--AACGATTTCGCCAGCCCGTTACGACAGCTCTCCCCCCCTTCTCTGTACTGC----------------------------------------------------------TG-------------T----------TT---------A-TGGG-----CAATT---------------------------------------------ATAAATAT-------TGTT-AC------------------------------------------------------------------------------GTGCAATGTCTGCTCG
droWil2 scf2_1100000004585:2283005-2283034 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGGTGAGGACAGCTGGGAGGAGTTCTCA
droVir3 scaffold_12963:19400678-19400937 + AACTTC---T---TTGAAT--------GACA-------CAATGACGGCCAAGA---CAAGTGAGAGAATTGGG--C---------------------------------A---ATTG-CGACCTCTGGTCCAAAGTTTTG------------------------------------------TCCAACCTGC-----CAGACAA--ACCGATTTCACCAGCGTGATAAAAAAAAAAAAAA---------A-------TAGCTGT--TGACTTA-----AGCTAATCCA----------------------------------AAATA---------------TGATTTTGTTGTTGCT---------------------------CGT------------------------CGCTCATGCGAAACT----T-TC--GTTTGGCA---TTTTCAGATGGTG------------------------TATCTATGCCGATGTTGGGTGACAACAGCTGGGACGAGTTCACC
droMoj3 scaffold_6500:23813500-23813780 - AACCTC---T---TTGAAC--------GACA-------CAATGACGGCCAAGA---CAAGTGAGTGAATTGGG-----------------------------------CAATTGCTA-CGACCCGTGGTCCAAAGTGTGA------------------------------------------TACCAACAGC-----CAGACAACCAGCGATTTCACCAGCGT-TTATGAA------------------C-------CAGCTGTGATTAGCTA--ACTAGCAAATCCAGCAACAAAA-AATATAGCAGACA----AA-------------C----------CTGTTGTTACATTAAC------------------------ATATGCT------------------------TGCTCATGCGAAACT----T-TC--ATTTGATA---TTTTCAGACGGTT---------------------------CAATGCCAACGTTGGGCGAAAACAGCTGGGAGGAATTCTCC
droGri2 scaffold_15252:7265605-7265883 + GATCAT---GTCTCTGCAA--------GACG-------CAACAACGACAAAGACAGCAAGTGAGAGAATTGGC--T---------------------------------AATTGCGACCGACCCATGGTCCAATGTTTCGTTC-----CA--------------------------------------------------------TACGATTTCATCAGGCTTATAAAA---------------------------CAGCTGT--TTAATTACTATTAGTTAATCCA----------------------------------AAACCTGTTCATCTATTCATCA---TTGTTGCTGTT----------------GTCA--CAACTGTT------------------------AACTCATGC------GAAAC-TTTCTTTTGACTAACTTTCTAGATGG--------------------TGTATCC-AATATGGCAACGCTGGGTGAAAACAGCTGGGAGGAATTTTCC
droAna3 scaffold_12916:2742506-2742817 + TATAACCACA---GCACTAT---------------CTT------CTCCAATGA---CAAGTGAGTAAGCTGGTCCGGAGGAGGGCATGGTCGTTGGCCAGCAAATCTGCGCTCGTTT-CGCACCTAGGTCCGAAGTCTCGGCTTGCTCTTCGTCTGTGGCTCCCC-------------GACGTCTCACCCGC-----CAGAC----GGCGATTTCACCAGAC------------------------------------------------------------------------TT----TGTTTCGTCACCTGCAGTCGCAATCGG---------------TGTTTT------TGTTTCTCG------------------------------------CTTACTATGTTCG--------------------------CT-----ACTATTTCAGATGGCCAGGTGAATTCGGACATGGATG---CGAATCTGAAGCGGCTGGGCGAGAACAGCTGGGAGGAGTTCTCC
droBip1 scf7180000396737:2021843-2022167 - TATAACCACG---GCACTAT---------------CTG------CGCCAATGA---CAAGTGAGTAAGCTGGTCCGGAGGAGGGCATGGTCGTTGGCCAGCAAATCTGCGCGCGTTT-CGCACCCAGGTCCGAAGTCTCGGCTCGCTCTTCGTCTTTAGCTCCTCGGCACGCCGCCGCGACGTCTCACCCGC-----CAGAC----GGCGATTTCACCAGAC------------------------------------------------------------------------TT----TGTTTCGTCACCTGCAGTCGCAATCGG---------------TGATTT------TGTTTCTCG------------------------------------CTTACGATGTCCG--------------------------CT-----ACTATTTCAGATGGCCAGGTGAATTTGGACATGGAGG---CGAATCTGAAGCGGCTGGGCGAGAACAGCTGGGAGGAGTTCTCC
droKik1 scf7180000301725:155754-155860 - CTTTGA---G---TTACAATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTG----------------------------------------------------------------------------------------------CAGTTGCT----------------------------------------------------------------------------------------------------------AACC-TTCCT-----TC---TTTTTAGATGGCCAGGTGG------------ATA---TAGAGGAGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCC
droFic1 scf7180000453904:1123774-1123845 + CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGGTGACCAGCCGG------AAGTGGAGG---AG---CCACAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCC
droEle1 scf7180000490458:439623-439698 - TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTT-----TC---TTTGTAGATGGCCTGGAGG------------AGG---AGGAACTGCAGCTTCTGGGCGAGAACAGCTGGGAGGAGTTCTCC
droRho1 scf7180000769144:100405-100657 - CACAAC---A---GCGAAATCTGCGGAGACGGTAGTTC------CCCCAGAAG---CAAGTGAGTAAACCGGA--GGAGGAGGCCATGGTCA--GGTCACG-AATTGGCACGAATTT-CGCACCTGAGTCCGAAGTCTC-----------------------------------------------ACCT----------------GGCGATTTCACCAGAC------------------------------------------------------------------------TT--TCCGTTTCGCTGC----AG-------------T----------T----TTGGTTT-TGTT-----TAATT------------------------------------------------AATGA------GCATT-CCCC-----------TTTTCAGATGACCAGGAGG------------AGA---AGCAGCCACAAGTTCTGGGCGAGAACAGCTGGGAGGAGTTCTCA
droBia1 scf7180000302261:2960673-2960954 - ACCAAC---G---GCGCAATCTTCGGAGGCGACCCTTT------CCCCAGACA---CAAGTGAGTAGTGAGGA--GGAGGAGGTCATGGTCA--GGTCGCC-AGTTCGCACTCACTT-CGCACCTGAGTCCGAAGTCTCCGCTGGCTGGTT----------------------------GCTTCTAAGCTG---------------GGCGATTTCACCAGCC------------------------------------------------------------------------AC----TGTTTCGTCAC----AG-------------C----------TCGGCTTTATTTGAGCT-----TAACCA--------------------------------------------ACTGCT--------GGATTCCCCCT-----TC---TTTTCAGATGGTCTGCAGG------------AGG---AGGCGCCGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCC
droTak1 scf7180000415856:512425-512486 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGATGGCCAGGAGG------------AGG---AGCAACT---GCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCC
droEug1 scf7180000409554:1579658-1579719 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGATGGCCAAGAAG------------AGG---AG---CTACAGCTGCTGGGGGAGAACAGCTGGGAGGAATTCTCC
dm3 chr2L:852962-853250 + AACAGC---G---GCGCAATCTCCCGCGGCGGAACTTT------CGCCAGAGA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-GACTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTCCGCTG----GTT----------------------------GCGCTTCACCTGG-----CCCGC---GGGCGATTTCACCAGAC------------------------------------------------------------------------GCAGACCATTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTT-----GAATT---------------------------------------------ACTTATGT------GGATT-CCCCC-----TG---CTTTCAGATGGCCAGACGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCT
droSim2 2l:815690-815976 + dsi_2924 AACAGC---G---GCGCAATCTCCCGCGGCGGAACTTT------CGCCAGAAA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-GATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTCCGCTG----GTT----------------------------GCGCTTCACCTGG-----CTCAC---GGGCGATTTCACCAGAC------------------------------------------------------------------------GCA-ACCATTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTT-----TAATT---------------------------------------------ACTAATGT-------GATT-CCCCT-----TG---CTTTCAGATGGCCAGACGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCC
droSec2 scaffold_14:823590-823897 + AACATC---G---GCGCAATCTCCCGCGGCGGAACTTT------CGCCAGAAA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-GATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTCCGCTG----GTT----------------------------GCGCTTCACCTGG-----CTCAC---GGGCGATTTCACCAGAC------------------------------------------------------------------------GCA-ACCATTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTT-----TAATTACTAATGTAATGTGTTTAAT------------------------TACTAATGT-------GATT-CCCCC-----TG---CTTTCAGATGGCCAGTCGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCC
droYak3 2L:836906-837193 + AACAGC---G---ACGCCATCTCCATCGGCGTCACCTG------CGCCAGAAA---CAAGTGAGTAAGCCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-AATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTTCGTTG----GTT----------------------------GCGCTTCACCTGG-----CTTAC---GGGCGATTTCACCAGAC------------------------------------------------------------------------AC----ACTTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTC-----T------------------------------------------------TGCTAATGTGGATGTGGATT-CCCCT-----TG---TTTTCAGATGGCCAGACGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCC
droEre2 scaffold_4929:909791-910079 + AACAGC---G---ACGCCATCTCCAGCGGCGTCACCTT------CGCCAGAAA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-AATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTGCGCTG----GTT----------------------------GCGCTTCACCTGG-----CTTAG---GGGCGATTTCACCAGAC------------------------------------------------------------------------AG--CCGATTTCGTCAC----AG-------------C----------TTGATTTTGCTGTAGTC-----T------------------------------------------------TGCTAATGTGAATGTGAATT--CCCT-----CG---TTTTCAGATGGCCAGCCGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGAACAGCTGGGAGGAGTTCTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AACGTC---A---CTGACATCGTCGGCTCTGGGGCTGTCGGCGGCTTCAAAGA---CAAGTGAGTGTGGTGGTACC---------------------------------TTTTAAGTCTGACCTGCGGTCCAAAGTCTAGCGC---------------------------------------TCTCACCTGCCGCGACAGACAA--AACGATTTCGCCACACCGTTACGACAGCTCTCCC-CCCTTCTCCGTGCTGC----------------------------------------------------------TG-------------T----------TTGTTTTGC--------------AATT-----------------GTTAAATATTGTTACGTGCAATGTCTG--------------------------CT-----CGCCTTTTAGATGGCGTCGTTG------------AGG---A---------ACAGCTGGGAGCCGACAGCTGGGAGGAGTTCTCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................CTGGGGCTGTCGGCGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGACAGCTGGGAGGAGTTCTCG2511.0010100000000
.......................................................................GTACC---------------------------------TTTTAAGTCTGACCTG....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCGTTG------------AGG---A---------ACAGCTGG..........................2111.0010100000000
...GTC---A---CTGACATCGTCGGCTCTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................AGA---CAAGTGAGTGTGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG------------AGG---A---------ACAGCTGGGAGCC.....................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGATGGCGTCGTTG------------AGG---............................................2011.0010100000000
................................................................................................................TAAGTCTGACCTGCGGTCCA.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............GACATCGTCGGCTCTGGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................CCGTTACGACAGCTCTCCC-C...............................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTG--------------------------CT-----CGCCTTTTAGATGGC.....................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGACAGCTGGGAGGAGTT....2111.0010100000000
.............CTGACATCGTCGGCTCTGGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...............................................................................................................................................................................................................................................C-CCCTTCTCCGTGCTGC----------------------------------------------------------TG-------------T----------TT..........................................................................................................................................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG------------AGG---A---------ACAGCTGGGAGCCGA...................2211.0010100000000
..................ATCGTCGGCTCTGGGGCTGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................GTCGGCTCTGGGGCTGTCGGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................AGTCTAGCGC---------------------------------------TCTCACCTGCCGC..............................................................................................................................................................................................................................................................................................................................................2311.0010100000000
AACGTC---A---CTGACATCGTCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG---A---------ACAGCTGGGAGCCGAC..................2011.0010100000000
.................CATCGTCGGCTCTGGGGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
................ACATCGTCGGCTCTGGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
........................................................................................................................................................................................................................................................CCGTGCTGC----------------------------------------------------------TG-------------T----------TTGTTTTG....................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................CGTGCTGC----------------------------------------------------------TG-------------T----------TTGTTTTGC--------------.....................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTG------------AGG---A---------ACAGCTGGG.........................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTTG------------AGG---A---------ACAGCTGGGAG.......................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------AGG---A---------ACAGCTGGGAGCC.....................1911.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTGCAATGTCTG--------------------------CT-----C...................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................CTTCTCCGTGCTGC----------------------------------------------------------TG-------------T----------TTG.........................................................................................................................................................................................2011.0010100000000
.............CTGACATCGTCGGCTCTGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------AGG---A---------ACAGCTGGGAGCCG....................2011.0010100000000
..........................................................AGTGAGTGTGGTGGTACC---------------------------------TT..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
................................................AAAGA---CAAGTGAGTGTGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................GTCCAAAGTCTAGCGC---------------------------------------TCTCA......................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
....................................................................................................................................AAGTCTAGCGC---------------------------------------TCTCACCTG..................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................TACC---------------------------------TTTTAAGTCTGACCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.......................................................................................................................................TCTAGCGC---------------------------------------TCTCACCTGCCG...............................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................CGC---------------------------------------TCTCACCTGCCGCGACAGTT.......................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---A---------ACAGCTGGGAGCCGACA.................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTGGGAGGAGTTCT..1911.0010100000000
......................................................................................................................................GTCTAGCGC---------------------------------------TCTCACCTGCCG...............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTTG------------AGG---A---------ACAGCTGGGA........................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------AGG---A---------ACAGCTGGGAGCCT....................1911.0010000001000
.................................................................................................................................................................................................................................TACGACAGCTCTCCC-CCCTTC..........................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAATGTCTG--------------------------CT-----CGCCT...............................................................................2011.0010100000000
...................................................GA---CAAGTGAGTGTGGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
....................................................................................................................................AAGTCTAGCGC---------------------------------------TCTCACCTGC.................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
droPer2
AACGTC---A---CTGACATCGTCGGCTCTGGGGCTGTCGGCGGCGTCAAAGA---CAAGTGAGTGTGGTGGTACC---------------------------------TTTTAAGTCTGACCTGCGGTCCAAAGTCTAGCGC---------------------------------------TCTCACCTGCCGCGACAGACAA--AACGATTTCGCCAGCCCGTTACGACAGCTCTCCCCCCCTTCTCTGTACTGC----------------------------------------------------------TG-------------T----------TT---------A-TGGG-----CAATT---------------------------------------------ATAAATAT-------TGTT-AC------------------------------------------------------------------------------GTGCAATGTCTGCTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................CTGGGGCTGTCGGCGGCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...............GACATCGTCGGCTCTGGGGCTGTCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.................CATCGTCGGCTCTGGGGCTGTCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................GTCGGCTCTGGGGCTGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...GTC---A---CTGACATCGTCGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGGTGAGGACAGCTGGGAGGAGTTCTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAGCTGGGAGGAGT.....1911.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTGAGGACAGCTGGGAGGA.......2311.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAGCTGGGAGGAGTTCT..2211.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTGGGAGGAGTTCT..1911.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTGGGAGGAGTTCTCA2111.00100100
droVir3
AACTTC---T---TTGAAT--------GACA-------CAATGACGGCCAAGA---CAAGTGAGAGAATTGGG--C---------------------------------A---ATTG-CGACCTCTGGTCCAAAGTTTTG------------------------------------------TCCAACCTGC-----CAGACAA--ACCGATTTCACCAGCGTGATAAAAAAAAAAAAAA---------A-------TAGCTGT--TGACTTA-----AGCTAATCCA----------------------------------AAATA---------------TGATTTTGTTGTTGCT---------------------------CGT------------------------CGCTCATGCGAAACT----T-TC--GTTTGGCA---TTTTCAGATGGTG------------------------TATCTATGCCGATGTTGGGTGACAACAGCTGGGACGAGTTCACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------TATCTATGCCGATGTTGGGT........................2112.002001000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGCCGATGTTGGGT........................1912.002001000000000000000000000000000000000000000000000000000000001000
.........T---TTGAAT--------GACA-------CAATGACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGCCGATGTTGGGTGA......................1911.001001000000000000000000000000000000000000000000000000000000000000
AACTTC---T---TTGAAT--------GACA-------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTGGGACGAGTTC...1811.001001000000000000000000000000000000000000000000000000000000000000
............................ACA-------CAATGACGGCCAAGA---CAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.............................CA-------CAATGACGGCCAAGA---CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------TATCTATGCCGATGTTGGG.........................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................A-------CAATGACGGCCAAGA---CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTG------------------------TATCTATGCCGATGTTGGGT........................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAGCTGGGACGAGTTCA..2211.001000000000100000000000000000000000000000000000000000000000000000
AACTTC---T---TTGAAT--------GACA-------CAATGACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGACAACAGCTGGGACGAGTTCACC2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCCGATGTTGGGTGAC.....................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGGGACGAGTTCACC2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------TATCTATGCCGATGTTGGGTGACAACA.................2811.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGATGTTGGGTGACAACAGCTGG............2711.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGGGACGAGTTCACC1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGACAACAGCTGGGACGT.......2111.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTGGGACGAGTT....1811.001001000000000000000000000000000000000000000000000000000000000000
................AAT--------GACA-------CAATGACGGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.............TTGAAT--------GACA-------CAATGACGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAGCTGGGACGAGTTCACC2411.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGCCGATGTTGGGTGACA....................2111.001000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGTGACAACAGCTGGGA..........2111.001000000000000000000100000000000000000000000000000000000000000000
.........T---TTGAAT--------GACA-------CAATGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CT----T-TC--GTTTGGCA---TTTTCA...........................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AACCTC---T---TTGAAC--------GACA-------CAATGACGGCCAAGA---CAAGTGAGTGAATTGGG-----------------------------------CAATTGCTA-CGACCCGTGGTCCAAAGTGTGA------------------------------------------TACCAACAGC-----CAGACAACCAGCGATTTCACCAGCGT-TTATGAA------------------C-------CAGCTGTGATTAGCTA--ACTAGCAAATCCAGCAACAAAA-AATATAGCAGACA----AA-------------C----------CTGTTGTTACATTAAC------------------------ATATGCT------------------------TGCTCATGCGAAACT----T-TC--ATTTGATA---TTTTCAGACGGTT---------------------------CAATGCCAACGTTGGGCGAAAACAGCTGGGAGGAATTCTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................A-CGACCCGTGGTCCAAAGTGTGA------------------------------------------TAC........................................................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
GATCAT---GTCTCTGCAA--------GACG-------CAACAACGACAAAGACAGCAAGTGAGAGAATTGGC--T---------------------------------AATTGCGACCGACCCATGGTCCAATGTTTCGTTC-----CA--------------------------------------------------------TACGATTTCATCAGGCTTATAAAA---------------------------CAGCTGT--TTAATTACTATTAGTTAATCCA----------------------------------AAACCTGTTCATCTATTCATCA---TTGTTGCTGTT----------------GTCA--CAACTGTT------------------------AACTCATGC------GAAAC-TTTCTTTTGACTAACTTTCTAGATGG--------------------TGTATCC-AATATGGCAACGCTGGGTGAAAACAGCTGGGAGGAATTTTCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TATAACCACA---GCACTAT---------------CTT------CTCCAATGA---CAAGTGAGTAAGCTGGTCCGGAGGAGGGCATGGTCGTTGGCCAGCAAATCTGCGCTCGTTT-CGCACCTAGGTCCGAAGTCTCGGCTTGCTCTTCGTCTGTGGCTCCCC-------------GACGTCTCACCCGC-----CAGAC----GGCGATTTCACCAGAC------------------------------------------------------------------------TT----TGTTTCGTCACCTGCAGTCGCAATCGG---------------TGTTTT------TGTTTCTCG------------------------------------CTTACTATGTTCG--------------------------CT-----ACTATTTCAGATGGCCAGGTGAATTCGGACATGGATG---CGAATCTGAAGCGGCTGGGCGAGAACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCGGACATGGATG---CGA.........................................2014.004300010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGGTGAATTCGGACAC....................................................2211.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGTGAATTCGGAC......................................................1811.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGCTGGGAGGAGTT....1811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAAGCGGCTGGGCGAG.....................2011.001100000
................CTAT---------------CTT------CTCCAATGA---CAAGTGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGAGAACAGCTGGGAG.........2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAACAGCTGGGAGGA.......1811.001010000
...AACCACA---GCACTAT---------------CTT------CTCCAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCGGACATGGATG---CGAA........................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGATG---CGAATCTGAAGCGGCT............................2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCGGCTGGGCGAGAAC..................2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGAGAACAGCTGGGAGG........2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAAGCGGCTGGGC........................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATG---CGAATCTGAAGC................................1911.001000010
droBip1
TATAACCACG---GCACTAT---------------CTG------CGCCAATGA---CAAGTGAGTAAGCTGGTCCGGAGGAGGGCATGGTCGTTGGCCAGCAAATCTGCGCGCGTTT-CGCACCCAGGTCCGAAGTCTCGGCTCGCTCTTCGTCTTTAGCTCCTCGGCACGCCGCCGCGACGTCTCACCCGC-----CAGAC----GGCGATTTCACCAGAC------------------------------------------------------------------------TT----TGTTTCGTCACCTGCAGTCGCAATCGG---------------TGATTT------TGTTTCTCG------------------------------------CTTACGATGTCCG--------------------------CT-----ACTATTTCAGATGGCCAGGTGAATTTGGACATGGAGG---CGAATCTGAAGCGGCTGGGCGAGAACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droKik1
CTTTGA---G---TTACAATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTG----------------------------------------------------------------------------------------------CAGTTGCT----------------------------------------------------------------------------------------------------------AACC-TTCCT-----TC---TTTTTAGATGGCCAGGTGG------------ATA---TAGAGGAGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droFic1
CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGGTGACCAGCCGG------AAGTGGAGG---AG---CCACAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droEle1
TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTT-----TC---TTTGTAGATGGCCTGGAGG------------AGG---AGGAACTGCAGCTTCTGGGCGAGAACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droRho1
CACAAC---A---GCGAAATCTGCGGAGACGGTAGTTC------CCCCAGAAG---CAAGTGAGTAAACCGGA--GGAGGAGGCCATGGTCA--GGTCACG-AATTGGCACGAATTT-CGCACCTGAGTCCGAAGTCTC-----------------------------------------------ACCT----------------GGCGATTTCACCAGAC------------------------------------------------------------------------TT--TCCGTTTCGCTGC----AG-------------T----------T----TTGGTTT-TGTT-----TAATT------------------------------------------------AATGA------GCATT-CCCC-----------TTTTCAGATGACCAGGAGG------------AGA---AGCAGCCACAAGTTCTGGGCGAGAACAGCTGGGAGGAGTTCTCASizeHit CountTotal NormTotal
No Reads
droBia1
ACCAAC---G---GCGCAATCTTCGGAGGCGACCCTTT------CCCCAGACA---CAAGTGAGTAGTGAGGA--GGAGGAGGTCATGGTCA--GGTCGCC-AGTTCGCACTCACTT-CGCACCTGAGTCCGAAGTCTCCGCTGGCTGGTT----------------------------GCTTCTAAGCTG---------------GGCGATTTCACCAGCC------------------------------------------------------------------------AC----TGTTTCGTCAC----AG-------------C----------TCGGCTTTATTTGAGCT-----TAACCA--------------------------------------------ACTGCT--------GGATTCCCCCT-----TC---TTTTCAGATGGTCTGCAGG------------AGG---AGGCGCCGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droTak1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGATGGCCAGGAGG------------AGG---AGCAACT---GCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droEug1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGATGGCCAAGAAG------------AGG---AG---CTACAGCTGCTGGGGGAGAACAGCTGGGAGGAATTCTCCSizeHit CountTotal NormTotal
No Reads
dm3
AACAGC---G---GCGCAATCTCCCGCGGCGGAACTTT------CGCCAGAGA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-GACTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTCCGCTG----GTT----------------------------GCGCTTCACCTGG-----CCCGC---GGGCGATTTCACCAGAC------------------------------------------------------------------------GCAGACCATTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTT-----GAATT---------------------------------------------ACTTATGT------GGATT-CCCCC-----TG---CTTTCAGATGGCCAGACGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................CCGGA--GGAGGAGGTCGTGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGCGAGGACAGCTGGGA..........2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000010001000000000000
..................................................................AACCGGA--GGAGGAGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
...........................................................GTGAGTAAACCGGA--GGAGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGCTGGGCGAGGACA.................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGCGAGGACAGCTGGGA..........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGACGG------------AGG---AGCCCCT.....................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CCGCGGCGGAACTTT------CGCCAGAGA---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGCGAGGACAGCTGGGAGGAG......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTGGGAGGAGTTCTCT2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGAGGACAGCTGGGC..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................TCTCCCGCGGCGGAACTTT------CGCCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCAGACGG------------AGG---AGC.........................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGACGG------------AGG---AGCCCCTGCA..................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCTGGGCGAGGACAGCTGG............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGACGG------------AGG---AGCCCCTGCAGC................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................AGGAGGTCGTGGTCA--GGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGACAGCTGGGAGGAGT.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG------------AGG---AGCCCCTGCAGCTGCTGG..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGACGG------------AGG---AGCCCC......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCCCGCGGCGGAACTTT------CGCCAGAGA---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGCCAGACGG------------AGG---AGCCC.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGGCGAGGACAGCTGGGAGGAGT.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CTGAGTCCGAAGTTTCCGCT..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCAGACGG------------AGG---AG..........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.ACAGC---G---GCGCAATCTCCCGCGGCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AGGAGGTCGTGGTCA--GGT................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCTGGGCGAGGACAGCTGGGAGGA.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACGG------------AGG---AGCCCCTGCAGC................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....C---G---GCGCAATCTCCCGCGGCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGAGGACAGCTGGGAG.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGCTGGGCGAGGACAG................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................AATCTCCCGCGGCGGAACTTT------CGCCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCAATCTCCCGCGGCGGAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAGCTGGGAGGAG......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGACAGCTGGGAGGA.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TGCTTTGGTTTTAGTT-----GAAT..................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGGGAGGAGTTCTCT1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................GCACGCTCTG-CGCACCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATGT------GGATT-CCCCC-----TG---CTTT.............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCCGCGGCGGAACTTT------CGCCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT------GGATT-CCCCC-----TG---CTTTCA...........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................T----------------------------GCGCTTCACCTGG-----CCCGC---....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CTTCACCTGG-----CCCGC---GGGCGA..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGACGG------------AGG---AGCCCCTGC...................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCTGGGCGAGGACAG................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGACAGCTGGGAGGAGTTC...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................CGATTTCACCAGAC------------------------------------------------------------------------GCAGACC....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGACGG------------AGG---AGCCCCTGTC..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGACGG------------AGG---AGCCCCTGCAGCTGC.............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------AGG---AGCCCCTGCAGCTGCTG...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGACGG------------AGG---AGCCCCTGCAGC................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGCCCCTGCAGCTGCTGGGCGAGGAC..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGATGGCCAGACGG------------AGG---AGC.........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAGCTGGGAGGAGTTCTCT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGCGAGGACAGCTGGGAGGAGTTC...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................AATCTCCCGCGGCGGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................G-CGCACCTGAGTCCGAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................C------------------------------------------------------------------------GCAGACCATTTCGTCAC----AG-------------C----------............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACAGC---G---GCGCAATCTCCCGCGGCGGAACTTT------CGCCAGAAA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-GATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTCCGCTG----GTT----------------------------GCGCTTCACCTGG-----CTCAC---GGGCGATTTCACCAGAC------------------------------------------------------------------------GCA-ACCATTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTT-----TAATT---------------------------------------------ACTAATGT-------GATT-CCCCT-----TG---CTTTCAGATGGCCAGACGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................ACC-GATTCGCACGCTCTG-...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------AGG---AGCCCCTGCAGCTGCTGGGCGA......................2611.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGACGG------------AGG---AGCCCCTGC...................................2411.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCCTGCAGCTGCTGGGC........................2011.00100100000000000000
.......................................................................GA--GGAGGAGGTCGTGGTCA--...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGACAGCTGGGAGGAGA.....2011.00100000000000001000
droSec2
AACATC---G---GCGCAATCTCCCGCGGCGGAACTTT------CGCCAGAAA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-GATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTCCGCTG----GTT----------------------------GCGCTTCACCTGG-----CTCAC---GGGCGATTTCACCAGAC------------------------------------------------------------------------GCA-ACCATTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTT-----TAATTACTAATGTAATGTGTTTAAT------------------------TACTAATGT-------GATT-CCCCC-----TG---CTTTCAGATGGCCAGTCGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGCGAGGACAGCTGGGA..........2213.0030120
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGCGAGGACAGCTGGGAGGA.......2512.0020020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGGGCGAGGACAGCTGGG...........2311.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGCCAGTCGG------------AGG---AGCC........................................2111.0010100
............................................................................................................................................................................................................................................................................................................CATTTCGTCAC----AG-------------C----------TTGCTTTG....................................................................................................................................................................................2211.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCTGGGCGAGGACAGCTGG............2311.0010010
....................CTCCCGCGGCGGAACTTT------CGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCGAGGACAGCTGGGAG.........2111.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGGGAGGAGTTCTC.1911.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGG------------AGG---AGCCCCTGC...................................1911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGGCGAGGACAGCTGGGAGGA.......2611.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGCTGGGCGAGGAC..................2011.0010010
.......................................................................................GGTCA--GGTCACC-GATTCGCACGCTCTG-...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
AACATC---G---GCGCAATCTCCCGCGGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGCGAGGACAGCTGGGAGG........2411.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG---AGCCCCTGCAGCTGCTGGGC........................2311.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGCTGGGCGAGGACAGCT..............2411.0010001
droYak3
AACAGC---G---ACGCCATCTCCATCGGCGTCACCTG------CGCCAGAAA---CAAGTGAGTAAGCCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-AATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTTCGTTG----GTT----------------------------GCGCTTCACCTGG-----CTTAC---GGGCGATTTCACCAGAC------------------------------------------------------------------------AC----ACTTTCGTCAC----AG-------------C----------TTGCTTTGGTTTTAGTC-----T------------------------------------------------TGCTAATGTGGATGTGGATT-CCCCT-----TG---TTTTCAGATGGCCAGACGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGG------------AGG---AGCCCCTGCAGCTGCTGGGC........................2912.00200200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGACGG------------AGG---AGCCCCTGCA..................................2311.00101000000000
..................ATCTCCATCGGCGTCACCTG------CGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGCTGGGAGGAGTT....1811.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGACGG------------AGG---AGCCCCTGCAGC................................2511.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---AGCCCCTGCAGCTGCTGGGC........................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGG------------AGG---AGCCCCTGCAGCT...............................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGGGAGGAGTTCTCC2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---AGCCCCTGCAGCTGCTGGGCGAGGA...................2711.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------AGG---AGCCCCTGCAGCTGCTGGGCG.......................2611.00100100000000
droEre2
AACAGC---G---ACGCCATCTCCAGCGGCGTCACCTT------CGCCAGAAA---CAAGTGAGTAAACCGGA--GGAGGAGGTCGTGGTCA--GGTCACC-AATTCGCACGCTCTG-CGCACCTGAGTCCGAAGTTTGCGCTG----GTT----------------------------GCGCTTCACCTGG-----CTTAG---GGGCGATTTCACCAGAC------------------------------------------------------------------------AG--CCGATTTCGTCAC----AG-------------C----------TTGATTTTGCTGTAGTC-----T------------------------------------------------TGCTAATGTGAATGTGAATT--CCCT-----CG---TTTTCAGATGGCCAGCCGG------------AGG---AGCCCCTGCAGCTGCTGGGCGAGAACAGCTGGGAGGAGTTCTCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGGGAGGAGTTCTC.1911.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGGGAGGAGTTCTCC2011.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCGAGAACAGCTGGGA..........2011.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGCGAGAACAGCTGGG...........2011.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGGGCGAGAACAG................1811.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGG------------AGG---AGCCCCTGCAGC................................2011.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGCGAGAACAGCTGGGA..........2111.0011000000

Generated: 05/18/2015 at 12:58 AM