ID:

dps_1564

 Coordinate:

4_group3:5247496-5247784 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.5 -29.8 -29.8

Flybase annnotation

exon [dpse_GLEANR_2516:9]; CDS [Dpse\GA16835-cds]; exon [dpse_GLEANR_2516:10]; CDS [Dpse\GA16835-cds]; intron [Dpse\GA16835-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCGGCGCAGATGTACGGGATGGCCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTTCAGTCCCACAGATCCCCCGTCCCGCCTCCATCCAAAACGTCCTACATTTTACTCAAATGTTGTTGAGGTGATTGTATAGACCGTGTTATCAAATATATTTTGCTCATGCTCCAAAATTTTGATCATGGGAATCCGCCTGAGACCGCCTCCAGTCTCCCCACCTGCCCACCTGACCACCTGCCCCCCTACCTGCCTCACTCTCTCATTGTGTCTCTGTGGTTTGTGTGTGTATCTCGATATGCTCTGTGCCTCTCTCCTTTCTCGCCATCTCGATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCT
************************************************************************************************************************...(((((..........(((((..((((((........((....))........)))))))))))..........(((((........)))))..)))))((.(((..((((((..((..........))..(((.........))).....)))))).))).))..***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M062
head
 GSM444067
head
.........GATGTACGGGATGGCCAAGAAGCTGG.................................................................................................................................................................................................................................................................................................................................................................. 26 0 1 3.00 3 2 1 0 0
.............TACGGGATGGCCAAGAAGCTGG.................................................................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
........................................................................................................................TTGAGGTGATTGTATAGACCGTGTTATCA................................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................................AGCCCTCAAGTTCGATGCCAC............................ 21 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................GATGCCACCGAATTGGAAGAAGC............. 23 0 1 1.00 1 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCACCGAATTGGAAGA................ 24 0 1 1.00 1 1 0 0 0
...................ATGGCCAAGAAGCTGGGACCCGTGAAT....................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
......................GCCAAGAAGCTGGGACCCGTGAAT....................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................................................CGAATTGGAAGAAGCAGC.......... 18 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................................CTCTGTGGTTTGTGTGTGT..................................................................................................... 19 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................................CGATGCCACCGAATTGGA................... 18 0 1 1.00 1 1 0 0 0
..................GATGGCCAAGAAGCTGGGACCCGT........................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................................CTCAAGTTCGATGCCACCG.......................... 19 0 1 1.00 1 1 0 0 0
..........................AGAAGCTGGGACCCGTGAATA...................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................................................................................GTGTATCTCGATATGCTCTGTGCCTCT.............................................................................. 27 0 1 1.00 1 1 0 0 0
....................................................................................................................GTTGTTGAGGTGATTGTATAGACC......................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.....................GGCCAAGAAGCTGGGACC.............................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0
............................AAGCTGGGACCCGTGAATAAAC................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1
..............................................................................................................................................................................................................................................................................................................................................TATAGAAGCCCTCAAGTTCGATGCCACC........................... 28 0 1 1.00 1 1 0 0 0
........................CAAGAAGCTGGGACCCGTGA......................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................TTTTGATCATGGGAATCCGCCTGAGA............................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................................................................CTGTGGTTTGTGTGTGTATC.................................................................................................. 20 0 1 1.00 1 0 1 0 0
...GGCGCAGATGTACGGGAT................................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................................................CTCTCTCATTGTGTCTCTGT.................................................................................................................. 20 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................................CGATGCCACCGAATTGGAAGAAGCA............ 25 0 1 1.00 1 1 0 0 0
.............................................................................................AACGTCCTACATTTTACTCA.................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.............................................................................................................................GTGATTGTATAGACCGTGTTATCAA............................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................ACCGAATTGGAAGAAGCAGCCGCAGCC... 27 0 1 1.00 1 1 0 0 0
.............TACGGGATGGCCAAGAAGCTGGGA................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0
..............ACGGGATGGCCAAGAAGCTGGGA................................................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
..............................................................................................................TCAAATGTTGTTGAGGTGATTG................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CAAGTTCGATGCCACCGAATTGGAA.................. 25 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................ATATTTTGCTCATGGGAATCT..................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0
..............................................................................................................................................................................................................CAACTCTCCCCACCTTCCCA................................................................................................................................................................... 20 3 19 0.16 3 3 0 0 0
..............................................................................................................................................................................................................CAACTCTCCCCACCTTCCCAC.................................................................................................................................................................. 21 3 7 0.14 1 1 0 0 0
..............ACGGGTTGGCCAACGAGCTG................................................................................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

GCGCCGCGTCTACATGCCCTACCGGTTCTTCGACCCTGGGCACTTATTTGCACTCAAAGTCAGGGTGTCTAGGGGGCAGGGCGGAGGTAGGTTTTGCAGGATGTAAAATGAGTTTACAACAACTCCACTAACATATCTGGCACAATAGTTTATATAAAACGAGTACGAGGTTTTAAAACTAGTACCCTTAGGCGGACTCTGGCGGAGGTCAGAGGGGTGGACGGGTGGACTGGTGGACGGGGGGATGGACGGAGTGAGAGAGTAACACAGAGACACCAAACACACACATAGAGCTATACGAGACACGGAGAGAGGAAAGAGCGGTAGAGCTAGAATATCTTCGGGAGTTCAAGCTACGGTGGCTTAACCTTCTTCGTCGGCGTCGGCGA
*****************************************************************************************************...(((((..........(((((..((((((........((....))........)))))))))))..........(((((........)))))..)))))((.(((..((((((..((..........))..(((.........))).....)))))).))).))..************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M059
embryo
 GSM444067
head
 M022
male body
..............................................................................................................................................................................................................GGTCTGAGGGGTGGACTG..................................................................................................................................................................... 18 2 6 3.83 23 22 0 0 1 0
......................................................................................................................................................................................................................GGCTTGAGGGGTGGACTG............................................................................................................................................................. 18 3 20 1.35 27 26 1 0 0 0
...........................................................................................................................................................................................................GGAGGTCTGAGGGGTGGAC....................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................AAAAACGAGTACGAGGTTTT....................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................GTCGGTCTGAGGGGTGGAC....................................................................................................................................................................... 19 3 20 0.80 16 10 6 0 0 0
..................................................................................................................................................................................................................AGAGGGTTGGAGGGGTGGAC............................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................GGTCTGAGGGGTGGACTGTT................................................................................................................................................................... 20 3 6 0.50 3 2 1 0 0 0
..............................................................................................................................................................................................................GGTCTGAGGGGTGGACTGT.................................................................................................................................................................... 19 3 20 0.45 9 7 2 0 0 0
.............................................................................................................................................................................................................CGGTCTGAGGGGTGGACTG..................................................................................................................................................................... 19 3 20 0.40 8 7 0 0 0 1
.........................................................................................................................................................................................................GCGGCGGTTTGAGGGGTGGAC....................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
....................................................................................AGGTCGGTTTTGCAATATGTA............................................................................................................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0
..............................................................................................................................................................................................................GGTTAGAGGGGTGGACTG..................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0
...................................................................................................................................................................................................................................................GAAGGACGATGTGAGAGAGTA............................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0
........................................................................................................................................................................................................GGCGGCGGTTTGAGGGGTGGA........................................................................................................................................................................ 21 3 5 0.20 1 1 0 0 0 0
............................................................................................................................................................................................................TCGGTCTGAGGGGTGGAC....................................................................................................................................................................... 18 3 20 0.20 4 3 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GTTCAAGCCACGGTGGTCTA....................... 20 3 6 0.17 1 1 0 0 0 0
...............................................................................................................................................................................................................................GGTGGGCTGGTGGGCGGGGG.................................................................................................................................................. 20 2 7 0.14 1 0 0 1 0 0
...........................................................................................................................................................ACCACGAGTACGAGGTTTTTA..................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 1 0 0
...........................................................................................................................................................................................................GGCGGTTTGAGGGGTGGAC....................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0
..................................................................................................................................................................................................................TGAGGGGTGGAGGGGTGGAC............................................................................................................................................................... 20 2 12 0.08 1 1 0 0 0 0
..........................................................................................................................................................................................................CGGCGGTTTGAGGGGTGGAC....................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................GGTGGCTTAGCCTTCGACGT............ 20 3 15 0.07 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CTATACGAGAAACGGTAAGA............................................................................ 20 3 17 0.06 1 1 0 0 0 0
..............................................................................................................................................CAACAGGTTATATAAAAC..................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1
.............................................................................................................................................................................................................CGGTTAGAGGGGTGGACTG..................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................GAGGGGTGGACTGTTAGAC............................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................GAGGGGTGGACTGTTAGAC....................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
........................................................................................................AAAATGACTTTACAACAAATA........................................................................................................................................................................................................................................................................ 21 3 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................AAAACGAGTACGGGTTTT........................................................................................................................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:5247446-5247834 + dps_1564 CGCGGCGCAGATGTACGGGAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCCC--A--CA-------------------GATCCCCCGTCCCGCCTCCATCCAAAACGTCCTA----------CATTTTACTCAAATGT-----TGT-TGAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAT-AGACCGTGTTATCAAATATATTTTGCT-CATGC-----T--------CCA---------------AAAT--TTTGATCATGGGAATC-CGC-CTGA------G--AC-------CGCC------------------TCC--------------------AGTCTCCCCACC--TGCCCACCTGACCACCTGCCCCC--CT---ACCTGCCTCACTC-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCC--TT-TCTCG-----------------------------------CCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCT
droPer2 scaffold_1:6739298-6739686 + CCCGGCGCAGATGTACGGAAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCCC--A--CA-------------------GATCCCACTTCCCGTCTCCATCCGAAACGTCCTA----------CATTTTACTCAAATGT-----TGT-TGAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAT-AGACCGTGTTATCAAATATATTTTGCT-CATGC-----T--------CCA---------------AAAT--TTTGATCATGGGAATC-CGC-CTGA------G--AC-------CGCC------------------TCC--------------------AGTCTCCCCACC--TGCCCACCTGACCACCTGCCCCC--CT---ACCTGCCTCACTC-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCC--TT-TCTCG-----------------------------------CCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCT
droWil2 scf2_1100000004521:8974012-8974387 - ACCAGAGACCATGTACGGTTT-GG-CCAAGAAGCTGGGACCAATGGATAAACGTGAGTTA-CATTCGACCCCACTC-----------A------AA-------------------AAAT--------A----------TATATCA--ATCAA-------TAT-AAAGGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--GTATCAATAT------GAT-T---------TTTAT----GTGAACATTTCGGATCTAAAATTGTTTGATTATGGGAATC--------------------------------------------------------------------------A-T----------------------C--CTTACTTACTTT-C-----ATTA---T-----------------------------------------------------------------------------------------------------------------------------------TT-----TTTGTGTGT----GGTTTTTTCATGTTCACTCTATGTGTGTTGTCCAATCGGTGTATTTCGATATGCTCTGTGGCTTTCTTT-----TCTCGTCTTTTCTTTTTCCCTTCTCTCTTCTCCTTTGTTTCGTTCTTA-TCCTTATAGTGCACATAAAATTTGATGCCAGCGAATTGGAAGATGCCACAT------CT
droVir3 scaffold_12963:15282339-15282724 + dvi_12016 TCCGGAAACGATGTATGGGCT-GG-CAAAGAAGCTGGGACCGTTGGATAAACGTGAGTTG-AACTCATAC-CAATC-----------T-------------------------------------------------------------AAGAT-------T-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAATAAT-TTTGGCT-CTCTA-----TGTTGATGACAC---------------AAAT--TTTGATTATGGGAATCTCGC-CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------TCGCATCGTCAAT-----------------------------------------ACGCACAAAATATC------------AAACAATTCCATTTGCATGAACCCCATTTCATACCCACCCCGCCCCCTAAAAATTTCTCTG---ACTGTGGCTGAATG----------------------TGT--GTGTCAATCGGTGTATTTCGATATGCTCTGTGCCTCTCT----TT-CTCCT-----------------------------------CATTTTCGGCTCTTATAGTGACGCTCAAGTTTGATCCTCGCGATCTGGAGGATGCTCCCCC----GTC
droMoj3 scaffold_6500:18259014-18259406 + GCCGGAGACGATGTTCGGGCT-GG-CCAAGAAGCTGGGGCCGTTGGATAAACGTGAGTTA---------------------------------------------------------------------------------------CTCAAAT-------T-GAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAATAAT-TTTTGCT-CTCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAATCTCGC-CCG------------------------------------------------------------------------------------------------------CATC-C-----ACTCGCAACGTCATTTCATTTTCTTCAACCTAACGTATATCGCTGTACTAATCTATGCGC----CATGTCTAACTCTCCTGAAATCTATTCCGCTTGCAT---------CTCACA---------------AAACATCTCTCTC---ACTGTGGCTGTGTG----------------------TGT--CTGTTAATCGGTGTATTTCGATATGCTCTGTGCCTCTCTCCTCTG-CTCCT-----------------------------------CATTTTCGGCTCTTATAGTGACGCTCAAATTCGATCCCAGCGAGCTGGAGGAGACGCCC---------
droGri2 scaffold_15126:4129944-4130136 - GCCAGAGACGTTGTATGGTCT-GG-CTAAGAAACTGGGATCATTGGATAAACGTGAGTTA-AACCCTAAC-CACT----------------------------------------------------------------CT------ATCAAAT-----TGAAAAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAATAAT-TTTTGCT-CTCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAATATCGC-CCCC----------C-------CACA------------------TCC-------------------CAAA-C----------------------C--CC---CTCCA------------CTCTT-----------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:5546804-5547164 - GCCGGAGACGATGTACGGATT-GG-CCAAGAAACTGGGTCCAATGGATAAACGTGAGTTTCAAGTCATAC-CATACC---ATAC---CATA--------------AAGTCTAGA-GAAAAAGA------------------------GTCATGT-------C-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTGTGGTGTGTGT----GTG---------------AAAT--TTTGATCATGGAAACATCC------------------ATTATTGGAAACT-----------------CGATAACCTCTCAAAAAACCCATA-T----------------------C--CA---TTCCA------------CCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTCATGATTGTGTGT--------------------------------CCT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TTTCTC--------------------------------TGCCTCGTTCTGGACTCTTGTAGTGACCCTGAAGTTCGATGCCTGCGACCTGGAGGATGCCACT---------
droBip1 scf7180000396568:1291260-1291624 + GCCGGAGACGATGTACGGACT-GG-CCAAGAAACTGGGTCCAGTGGATAAACGTGAGTTTCAAGTCAAAC-CATACC---GTAC---CATA---AA-------------------GAAAAAAAAGT-------------CA------GTCATGT-------C-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTCTGGTTTGTGT----GTG---------------AAAT--TTTGATCATGGAAACATCCGCCCGA------ACATCCGTTATTGGAAACT-----------------CGATAACCGCT------ATCCATA-T----------------------C--CA---TTCCA------------CCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTCATGATTGTGTGT--------------------------------CCT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TTTCTC--------------------------------TGCCTCGTTCTGGACTCTTGTAGTGACCCTAAAGTTTGATGCCTGCGACCTGGAGGATGCCACT---------
droKik1 scf7180000302270:1141626-1142117 + ACCGGAGACCATGTATGGTTT-GG-CCAAGAAGCTGGGACCTTTGGATAAACGTGAGTTA-ACTTCATCC-CACAC-------------------AT------------------GCAAAACA-CCTAAGCAAAAATCTTT------GTCATGTCTTTCCAA-AAAGGTGAAAACAAATATTAAAGAGAGGGAAAGGTTTATTTGATTTTATTTTTAAAATAAATATTTTAACTATTCTGAATTTAAAATTAAGAAGCTAATTTATTTGGATATCCTTATTAAATATTAATTTTAGAAAAATTTTCTAAACCTTCCTCATTTTTTTGTAC-GCAC---------------------CT-CTTTC-----TCTGT----GTG---------------AATT--TTTGATCATGGAAATCTCGCCCCGT------A--TC-------TGAA------------------TCC-------------------GAAA-C----------------------C--TGAATCTCCAT-----TCCATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATCGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTGCAACTCAAGTTCGACAGCAGCGACCTGGAGGATGCCACAGCCGCGAGT
droFic1 scf7180000453924:1485538-1485885 - CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTG-AACTCATCC-CACAA------AC---GAAAAAA---------------------AAAAAACATC--------------CT------GTCATGT-----TGC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGCACTCGAA--TT-------CGAA------------------CCC--------------------GAT-C----------------------C--CGTGTCTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGCTT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCGTCCTCAAGTTCGACCCCAGCGAGCTGGAGGATGCCACCGCGGCGAGT
droEle1 scf7180000490728:173099-173406 - GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AATTCAACCCCGC----------------------------------------------------TA----------CCT------ATCATGT-----CGCATAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC----------------GA------A--TC-------CGAA------------------TCC--------------------CAA-T----------------------C--CGTACTTCCATG-C-----ACTCGCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CCCT----------------------C--------T-TCTCCATCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGTGTGCTGGAGGATGCCACC---------
droRho1 scf7180000779523:180570-180900 - GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AAGTCATCC-CACAC-----------A------AA-------------------AAAAAACAACCTA----------CCT------GTCATGT-----CGC-AAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTACTGCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATCGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------TTCTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAAGATGCCACC---------
droBia1 scf7180000302261:1049752-1050072 - GCCGGAGACAATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AACTCATCC-CACTC-----------A------AA-------------------AAAAAGAAA---------------CT------GTCATGT-----CGC-AAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTACT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTACTTCCGTC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTT-TGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAGCTGGAGGACGC-------------
droTak1 scf7180000415438:404574-404905 + ACCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AAGTCATCC-CACAC-----------A------AA-------------------AAATATCA---------------CCT------GTCATGT-----TGCAAAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTACT-CTCTC-----TCTGT--GCGTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGCA------------------TCC--------------------ATA-T----------------------C--CGTACTTCCGTCCCATTCCGTGCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCG------------
droEug1 scf7180000409554:2588790-2589115 + CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCTTGGACAAACGTGAGTTG-AAGTCATCC-CACAC----------------------------------------AAAAACAACCTC----------TCA------GTCATGT-----TTC--AAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTA---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGCACTTCCATC-C-----ACTCCCAA-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTTCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGCGAGCTGGAGGATGCCACG---------
dm3 chr2L:3499730-3500050 - ACCGGAGACAATGTACGGACT-CG-CCAAAAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CA-------------------GA-------------------AAAAAACAACCCA----------TTT------GTCATTC-----CAC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAACTGGAGGA----------------
droSim2 2l:3359374-3359692 - dsi_12528 ACCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CA----------------------------------------GAAAAAGAACCCA----------TTT------GCCATTC-----CAC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTAAAGTTCGACACCAGCGAACTGGAGGA----------------
droSec2 scaffold_5:1602011-1602331 - ACCGGAGACCATGTACGGACTTGGCCCAAGAAGCTGGGACCGATGGACAAACGTGAGTAA-AAGTCAACCA--CA----------------------------------------GAAAAACAACCCA----------TTT------GTCATTC-----CAC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACACCAGCGAACTGGAGGA----------------
droYak3 2L:3488182-3488522 - dya_214 GCCGGAGACCATGTATGGGTT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CA-------------------TT-------------------GAACAACAACCCA----------TTT------GTCATGT-----CAC-TAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTACT-CTCTC-----TCTGT--GTGTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGTAACCGAA--TC-------CAAA------------------TCC--------------------AAA-T------CCGTG-----------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCGACG---------
droEre2 scaffold_4929:3534697-3535061 - GCCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CACCCACACACAACAAAAAAA-A-------------------AAAAACGAACCCA----------TTT------GCCATGT-----CAC-TAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAAACCGAATCCAAATCCAAATCC--------------------AAA-T----------------------C--CGTGCTTCCATG-C-----ATTCGCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAACGAGCTGGAGGATGGGACG--------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGCGGCGCAGATGTACGGGAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCCC--A--CA-------------------GATCCCCCGTCCCGCCTCCATCCAAAACGTCCTA----------CATTTTACTCAAATGT-----TGT-TGAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAT-AGACCGTGTTATCAAATATATTTTGCT-CATGC-----T--------CCA---------------AAAT--TTTGATCATGGGAATC-CGC-CTGA------G--AC-------CGCC------------------TCC--------------------AGTCTCCCCACC--TGCCCACCTGACCACCTGCCCCC--CT---ACCTGCCTCACTC-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCC--TT-TCTCG-----------------------------------CCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........GATGTACGGGAT-GG-CCAAGAAGCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030200001000
.............TACGGGAT-GG-CCAAGAAGCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................T-TGAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAT-AGACCGTGTTATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTCAAGTTCGATGCCAC............................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCACCGAATTGGAAGAAGC.............2311.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCACCGAATTGGAAGA................2411.0010100000000
...................AT-GG-CCAAGAAGCTGGGACCCGTGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......................G-CCAAGAAGCTGGGACCCGTGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGGAAGAAGCAGC..........1811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTGGTT-------------------------TG----TGTGTGT............................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCACCGAATTGGA...................1811.0010100000000
..................GAT-GG-CCAAGAAGCTGGGACCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGTTCGATGCCACCG..........................1911.0010100000000
............................AGAAGCTGGGACCCGTGAATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATCTCGATATGCTCTGTGCCTCT.....................................................................................................................2711.0010100000000
........................................................................................................................................................GT-----TGT-TGAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAT-AGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................GG-CCAAGAAGCTGGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................AAGCTGGGACCCGTGAATAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAAGCCCTCAAGTTCGATGCCACC...........................2811.0010100000000
..........................CAAGAAGCTGGGACCCGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T--TTTGATCATGGGAATC-CGC-CTGA------G--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTT-------------------------TG----TGTGTGTATC.........................................................................................................................................2011.0010000001000
...GGCGCAGATGTACGGGAT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTCTCTGT......................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCACCGAATTGGAAGAAGCA............2511.0010100000000
.......................................................................................................................AACGTCCTA----------CATTTTACTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................GTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAT-AGACCGTGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAATTGGAAGAAGCAGCCGCAGCC...2711.0010100000000
.............TACGGGAT-GG-CCAAGAAGCTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
..............ACGGGAT-GG-CCAAGAAGCTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................TCAAATGT-----TGT-TGAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCGATGCCACCGAATTGGAA..................2511.0010100000000
droPer2
CCCGGCGCAGATGTACGGAAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCCC--A--CA-------------------GATCCCACTTCCCGTCTCCATCCGAAACGTCCTA----------CATTTTACTCAAATGT-----TGT-TGAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAT-AGACCGTGTTATCAAATATATTTTGCT-CATGC-----T--------CCA---------------AAAT--TTTGATCATGGGAATC-CGC-CTGA------G--AC-------CGCC------------------TCC--------------------AGTCTCCCCACC--TGCCCACCTGACCACCTGCCCCC--CT---ACCTGCCTCACTC-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCC--TT-TCTCG-----------------------------------CCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................T-CAGTCCC--A--CA-------------------GATCCCACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGAATTGGAAGAAGC.............1911.001010000
............GTACGGAAT-GG-CCAAGAAGCTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...GGCGCAGATGTACGGAAT-GG-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCACC--TGCCCACCTGACCACC........................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTGGTT-------------------------TG----TGTGTGT............................................................................................................................................1911.001000010
droWil2
ACCAGAGACCATGTACGGTTT-GG-CCAAGAAGCTGGGACCAATGGATAAACGTGAGTTA-CATTCGACCCCACTC-----------A------AA-------------------AAAT--------A----------TATATCA--ATCAA-------TAT-AAAGGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--GTATCAATAT------GAT-T---------TTTAT----GTGAACATTTCGGATCTAAAATTGTTTGATTATGGGAATC--------------------------------------------------------------------------A-T----------------------C--CTTACTTACTTT-C-----ATTA---T-----------------------------------------------------------------------------------------------------------------------------------TT-----TTTGTGTGT----GGTTTTTTCATGTTCACTCTATGTGTGTTGTCCAATCGGTGTATTTCGATATGCTCTGTGGCTTTCTTT-----TCTCGTCTTTTCTTTTTCCCTTCTCTCTTCTCCTTTGTTTCGTTCTTA-TCCTTATAGTGCACATAAAATTTGATGCCAGCGAATTGGAAGATGCCACAT------CTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................TT-GG-CCAAGAAGCTGGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
..................................TGGGACCAATGGATAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAATTGGAAGATGCC............1911.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATTTGATGCCAGCGA.........................2011.00100100
droVir3
TCCGGAAACGATGTATGGGCT-GG-CAAAGAAGCTGGGACCGTTGGATAAACGTGAGTTG-AACTCATAC-CAATC-----------T-------------------------------------------------------------AAGAT-------T-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAATAAT-TTTGGCT-CTCTA-----TGTTGATGACAC---------------AAAT--TTTGATTATGGGAATCTCGC-CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------TCGCATCGTCAAT-----------------------------------------ACGCACAAAATATC------------AAACAATTCCATTTGCATGAACCCCATTTCATACCCACCCCGCCCCCTAAAAATTTCTCTG---ACTGTGGCTGAATG----------------------TGT--GTGTCAATCGGTGTATTTCGATATGCTCTGTGCCTCTCT----TT-CTCCT-----------------------------------CATTTTCGGCTCTTATAGTGACGCTCAAGTTTGATCCTCGCGATCTGGAGGATGCTCCCCC----GTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2619.009000000000000000000000000000000000000000000000000000000000900000
..........................................................................................................................................................................................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003001000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003001000000000000100000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGATTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.003002000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTCAATCGGTGTATTTCG......................................................................................................................................2112.002000000000000000000000000000000000000002000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAAATTTCTCTG---ACT................................................................................................................................................................................................1812.002110000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCTG---ACTGTGGCT..........................................................................................................................................................................................2012.002200000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
.................................CTGGGACCGTTGGATAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GC-CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------TCGCATCGT..........................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.....AAACGATGTATGGGCT-GG-CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.................GGCT-GG-CAAAGAAGCTGGGACCGTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCCTAAAAATTTCTCTG---ACT................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCATTTCATACCCACCCCGCC.......................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................AAAGAAGCTGGGACCGTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAATG----------------------TGT--GTGTCAATC.................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.......ACGATGTATGGGCT-GG-CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGAATCTCGC-CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------T..................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000100000000000000000000000
.........................CAAAGAAGCTGGGACCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................C-----------T-------------------------------------------------------------AAGAT-------T-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAATATC------------AAACAATTCCATTTGCAT.................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------TCGCATCGT..........................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATC------------AAACAATTCCATTTGC...................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GC-CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------TCGCATC............................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
.....AAACGATGTATGGGCT-GG-CAAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
....................T-GG-CAAAGAAGCTGGGACCGTTGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
..................................TGGGACCGTTGGATAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
......AACGATGTATGGGCT-GG-CAAAGAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..................GCT-GG-CAAAGAAGCTGGGACCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GACAC---------------AAAT--TTTGATTATGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACTGTGGCTGAATG----------------------TGT--GTGTC.....................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAAATTTCTCTG---ACT................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTG---ACTGTGGCTGAATG----------------------...............................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTCGCGATCTGGAGGATGC.............2311.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GATGACAC---------------AAAT--TTTGATTATGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------TCGCATCGTCAAT-----------------------------------------ACGCACA......................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCGC-CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------T..................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........ATGTATGGGCT-GG-CAAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------TCGCATC............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTTCGATATGCTCT.............................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCCCCTAAAAATTTCTCTG---ACT................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTG---ACTGTGGCTGAATG----------------------TGT--..........................................................................................................................................................2411.001000000000000000000000000000000000000001000000000000000000000000
...........TGTATGGGCT-GG-CAAAGAAGCTGGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
............GTATGGGCT-GG-CAAAGAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................TAC-CAATC-----------T-------------------------------------------------------------AAGAT-------T-AAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAGTTTGATCCTCGC...........................1911.001000000000000000001000000000000000000000000000000000000000000000
.CCGGAAACGATGTATGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.......................G-CAAAGAAGCTGGGACCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGC-CCGT------C--CC-------TCGC------------------TC-----------------------------------------------------------C------------TCGC...............................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGATCTGGAGGATGC.............1820.501000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGATCTGGAGGATGC.............1920.501000000000000000000000000000001000000000000000000000000000000000
droMoj3
GCCGGAGACGATGTTCGGGCT-GG-CCAAGAAGCTGGGGCCGTTGGATAAACGTGAGTTA---------------------------------------------------------------------------------------CTCAAAT-------T-GAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAATAAT-TTTTGCT-CTCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAATCTCGC-CCG------------------------------------------------------------------------------------------------------CATC-C-----ACTCGCAACGTCATTTCATTTTCTTCAACCTAACGTATATCGCTGTACTAATCTATGCGC----CATGTCTAACTCTCCTGAAATCTATTCCGCTTGCAT---------CTCACA---------------AAACATCTCTCTC---ACTGTGGCTGTGTG----------------------TGT--CTGTTAATCGGTGTATTTCGATATGCTCTGTGCCTCTCTCCTCTG-CTCCT-----------------------------------CATTTTCGGCTCTTATAGTGACGCTCAAATTCGATCCCAGCGAGCTGGAGGAGACGCCC---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC----CATGTCTAACTCTCCTGAA..................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGAGCTGGAGGAGAC.............1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTTCGATATGCTCTGT...........................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGTGTATTTCGATATGCTCTGT...........................................................................................................................2611.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATCGGTGTATTTCGATA...................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGATCCCAGCGAGCTGGAGGA................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATCCCAGCGAGCTGG....................1911.001100000
droGri2
GCCAGAGACGTTGTATGGTCT-GG-CTAAGAAACTGGGATCATTGGATAAACGTGAGTTA-AACCCTAAC-CACT----------------------------------------------------------------CT------ATCAAAT-----TGAAAAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAATAAT-TTTTGCT-CTCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAATATCGC-CCCC----------C-------CACA------------------TCC-------------------CAAA-C----------------------C--CC---CTCCA------------CTCTT-----------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GCCGGAGACGATGTACGGATT-GG-CCAAGAAACTGGGTCCAATGGATAAACGTGAGTTTCAAGTCATAC-CATACC---ATAC---CATA--------------AAGTCTAGA-GAAAAAGA------------------------GTCATGT-------C-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTGTGGTGTGTGT----GTG---------------AAAT--TTTGATCATGGAAACATCC------------------ATTATTGGAAACT-----------------CGATAACCTCTCAAAAAACCCATA-T----------------------C--CA---TTCCA------------CCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTCATGATTGTGTGT--------------------------------CCT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TTTCTC--------------------------------TGCCTCGTTCTGGACTCTTGTAGTGACCCTGAAGTTCGATGCCTGCGACCTGGAGGATGCCACT---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........GATGTACGGATT-GG-CCAAGAAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000002
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCTGCGACCTGGAGGAT...............2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGATATGCTGTGTGCCTCTCTCC--...............................................................................................................2711.001100000
...........................AAGAAACTGGGTCCAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.....................................................................................................................................................................................................................................................................................................................................................ATCAACAAT-TTTTCCTCCTCTGTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................................................................................................................................................................................................................TTCCTCCTCTGTGGTGTGTGT----GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCTGCGACCTGGAGGATGC.............2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCTGCGACCTGGAGGATGCCAC..........2611.001000001
droBip1
GCCGGAGACGATGTACGGACT-GG-CCAAGAAACTGGGTCCAGTGGATAAACGTGAGTTTCAAGTCAAAC-CATACC---GTAC---CATA---AA-------------------GAAAAAAAAGT-------------CA------GTCATGT-------C-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTCTGGTTTGTGT----GTG---------------AAAT--TTTGATCATGGAAACATCCGCCCGA------ACATCCGTTATTGGAAACT-----------------CGATAACCGCT------ATCCATA-T----------------------C--CA---TTCCA------------CCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTCATGATTGTGTGT--------------------------------CCT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TTTCTC--------------------------------TGCCTCGTTCTGGACTCTTGTAGTGACCCTAAAGTTTGATGCCTGCGACCTGGAGGATGCCACT---------SizeHit CountTotal NormTotal
No Reads
droKik1
ACCGGAGACCATGTATGGTTT-GG-CCAAGAAGCTGGGACCTTTGGATAAACGTGAGTTA-ACTTCATCC-CACAC-------------------AT------------------GCAAAACA-CCTAAGCAAAAATCTTT------GTCATGTCTTTCCAA-AAAGGTGAAAACAAATATTAAAGAGAGGGAAAGGTTTATTTGATTTTATTTTTAAAATAAATATTTTAACTATTCTGAATTTAAAATTAAGAAGCTAATTTATTTGGATATCCTTATTAAATATTAATTTTAGAAAAATTTTCTAAACCTTCCTCATTTTTTTGTAC-GCAC---------------------CT-CTTTC-----TCTGT----GTG---------------AATT--TTTGATCATGGAAATCTCGCCCCGT------A--TC-------TGAA------------------TCC-------------------GAAA-C----------------------C--TGAATCTCCAT-----TCCATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATCGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTGCAACTCAAGTTCGACAGCAGCGACCTGGAGGATGCCACAGCCGCGAGTSizeHit CountTotal NormTotal
No Reads
droFic1
CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTG-AACTCATCC-CACAA------AC---GAAAAAA---------------------AAAAAACATC--------------CT------GTCATGT-----TGC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGCACTCGAA--TT-------CGAA------------------CCC--------------------GAT-C----------------------C--CGTGTCTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGCTT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCGTCCTCAAGTTCGACCCCAGCGAGCTGGAGGATGCCACCGCGGCGAGTSizeHit CountTotal NormTotal
No Reads
droEle1
GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AATTCAACCCCGC----------------------------------------------------TA----------CCT------ATCATGT-----CGCATAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC----------------GA------A--TC-------CGAA------------------TCC--------------------CAA-T----------------------C--CGTACTTCCATG-C-----ACTCGCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CCCT----------------------C--------T-TCTCCATCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGTGTGCTGGAGGATGCCACC---------SizeHit CountTotal NormTotal
No Reads
droRho1
GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AAGTCATCC-CACAC-----------A------AA-------------------AAAAAACAACCTA----------CCT------GTCATGT-----CGC-AAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTACTGCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATCGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------TTCTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAAGATGCCACC---------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGGAGACAATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AACTCATCC-CACTC-----------A------AA-------------------AAAAAGAAA---------------CT------GTCATGT-----CGC-AAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTACT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTACTTCCGTC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTT-TGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAGCTGGAGGACGC-------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AAGTCATCC-CACAC-----------A------AA-------------------AAATATCA---------------CCT------GTCATGT-----TGCAAAAGGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTACT-CTCTC-----TCTGT--GCGTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGCA------------------TCC--------------------ATA-T----------------------C--CGTACTTCCGTCCCATTCCGTGCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCG------------SizeHit CountTotal NormTotal
No Reads
droEug1
CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCTTGGACAAACGTGAGTTG-AAGTCATCC-CACAC----------------------------------------AAAAACAACCTC----------TCA------GTCATGT-----TTC--AAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTGT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTA---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--TC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGCACTTCCATC-C-----ACTCCCAA-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTTCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGCGAGCTGGAGGATGCCACG---------SizeHit CountTotal NormTotal
No Reads
dm3
ACCGGAGACAATGTACGGACT-CG-CCAAAAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CA-------------------GA-------------------AAAAAACAACCCA----------TTT------GTCATTC-----CAC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAACTGGAGGA----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................CAAAAAGCTGGGACCGCTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAAAGCTGGGACCGCTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTGGGACCGCTGGACAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACCGGAGACAATGTACGGACT-CG-CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GTACGGACT-CG-CCAAAAAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGCCAGTGAACTGGA...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGC................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................AAAAAGCTGGGACCGCTGGACAAACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGCCAGTGAACTGGAGG.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AATGTACGGACT-CG-CCAAAAAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................T------GTCATTC-----CAC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TG---------------AAAT--TTTGATCATGGGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TC.................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCG......................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATGTACGGACT-CG-CCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T--TTTGATCATGGGAATCTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------C--CGTGCTTCCATC-C-----ATTCCCA..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCTGGGACCGCTGGACAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GACAATGTACGGACT-CG-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAGTGAACTGCT...................1860.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CA----------------------------------------GAAAAAGAACCCA----------TTT------GCCATTC-----CAC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTAAAGTTCGACACCAGCGAACTGGAGGA----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........ATGTACGGACT-GG-CCAAGAAGCTGGGACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.......ACCATGTACGGACT-GG-CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTCGATATGCTGTGTGCCTCTCTC..................................................................................................................2711.00100000010000000000
..................................TGGGACCGCTGGACAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATATGCTGTGTGCCTCT.....................................................................................................................2111.00110000000000000000
droSec2
ACCGGAGACCATGTACGGACTTGGCCCAAGAAGCTGGGACCGATGGACAAACGTGAGTAA-AAGTCAACCA--CA----------------------------------------GAAAAACAACCCA----------TTT------GTCATTC-----CAC-AAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAA------------------TCC--------------------AAA-T----------------------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACACCAGCGAACTGGAGGA----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................AGAAGCTGGGACCGATGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------..........................................................................................................................................................2111.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGT.................................................2811.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------------------------CCTTCTGGGCTCTTATAG..................................................2011.0010100
...........................AAGAAGCTGGGACCGATGGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..................................TGGGACCGATGGACAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTGT--------------------------------CCG----TCGGTGTATCT........................................................................................................................................2311.0010100
droYak3
GCCGGAGACCATGTATGGGTT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CA-------------------TT-------------------GAACAACAACCCA----------TTT------GTCATGT-----CAC-TAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTACT-CTCTC-----TCTGT--GTGTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGTAACCGAA--TC-------CAAA------------------TCC--------------------AAA-T------CCGTG-----------C--CGTGCTTCCATC-C-----ATTCCCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCGACG---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................TTTTACT-CTCTC-----TCTGT--GTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCGAGCTGGAGGATGCGAC..........2411.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC--------------------AAA-T------CCGTG-----------C--CGTGCTTCCATC-C-----.....................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCAGCGAGCTGGAGGATGC.............2411.00100000010000
..........ATGTATGGGTT-GG-CCAAGAAGCTGGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGATGCCAGCGAGCTGGAGGA................2511.00101000000000
............................AGAAGCTGGGACCGCTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
..........ATGTATGGGTT-GG-CCAAGAAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCAGCGAGCTGGAGGATGC.............2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATCTCGC-CCGTAACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..........ATGTATGGGTT-GG-CCAAGAAGCTGGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCT-----------------------------------CCTTCTGGGCTCTTATAG..................................................2311.00101000000000
......GACCATGTATGGGTT-GG-CCAAGAAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
....................T-GG-CCAAGAAGCTGGGACCGCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATGCTGTGTGCCTCT.....................................................................................................................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCAGCGAGCTGGAGGATGCGA...........2911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------------------------------CCG----TCGGTGTATCTCGAT....................................................................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................CTCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.........CATGTATGGGTT-GG-CCAAGAAGCTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...........................AAGAAGCTGGGACCGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................AAGAAGCTGGGACCGCTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................G--TTATCAACAAT-TTTTACT-CT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
..............ATGGGTT-GG-CCAAGAAGCTGGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................GG-CCAAGAAGCTGGGACCGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................CT-CTCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCAGCGAGCTGGAGG.................2311.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................G---------------AAAT--TTTGATCATGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
..................GTT-GG-CCAAGAAGCTGGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
............................................................................................................................................................................................................................................................................................................................................................................................G---------------AAAT--TTTGATCATGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTGT--------------------------------CCG----TCGGTGTATCTC.......................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGATGCCAGCGAGCTGGAGGATGC.............2911.00100000010000
.....AGACCATGTATGGGTT-GG-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
............GTATGGGTT-GG-CCAAGAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---ATTGTGTGT--------------------------------CCG----TCGGTGT............................................................................................................................................2011.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCAGCGAGCTGGAGGATGCGAC..........2711.00110000000000
droEre2
GCCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAACCA--CACCCACACACAACAAAAAAA-A-------------------AAAAACGAACCCA----------TTT------GCCATGT-----CAC-TAAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------TGTAT-ATACCG--TTATCAACAAT-TTTTGCT-CTCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAATCTCGC-CCGA------A--AC-------CGAAACCGAATCCAAATCCAAATCC--------------------AAA-T----------------------C--CGTGCTTCCATG-C-----ATTCGCAT-----------------------------------------------------------------------------------------------------------------------------------TCTC---ATTGTGTGT--------------------------------CCG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCC--TT-CTCCT-----------------------------------CCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAACGAGCTGGAGGATGGGACG--------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAACGAGCTGGA...................1812.0021000010
.............................GAAGCTGGGACCGCTGGACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......GACCATGTACGGACT-GG-CCAAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCTGGAGGATGGGAC..........2011.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGACGCCAACGAGCTGGAGGATG..............2611.0011000000
.................GACT-GG-CCAAGAAGCTGGGACCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGGCTCTTATAGT.................................................1911.0010000010
...................CT-GG-CCAAGAAGCTGGGACCGCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...............................................................................................................................................................................................................................................................................................................................................................TTTTGCT-CTCTC-----TCTGT----GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TCGGTGTATCTCGATATGCTG..............................................................................................................................2211.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------CCTTCTGGGCTCTTATAG..................................................1911.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGACGCCAACGAGCTGGA...................2111.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAACGAGCTGGAGGATGGGA...........2611.0010000010

Generated: 05/18/2015 at 12:57 AM