ID:

dps_1557

 Coordinate:

4_group3:5038135-5038194 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.6 -5.6

Flybase annnotation

exon [dpse_GLEANR_1950:6]; CDS [Dpse\GA25749-cds]; CDS [Dpse\GA25749-cds]; exon [dpse_GLEANR_1950:5]; intron [Dpse\GA25749-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. dps_1557  4_group3:5038156-5038181 -
  2. XL_group1a:3423153-3423178 -
star

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
GATCAGCCATTAGCTCATCCGCTGCGCTCTTGGATCTGGCCGAATCGGCAGTGGCATATCAACAGCATCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCACCACCAACAGCAACATGCAACGCTGTCACCCCCAACCACGCCCAC
**************************************************.......................((....((.((.((....)).)).))....)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M059
embryo
 GSM343916
embryo
 M040
female body
 V112
male body		 M062
head
 SRR902012
CNS imaginal disc
...............................................................AGCATCAACAGCAGCAGCAGCAGCAA....................................................................... 26 0 2 0.50 1 0 1 0 0 0 0
...............................GGATCGAGCCGAATCTGCAGT............................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0
.............................................................ACAGCATCAACAGCAGCAGCAG............................................................................. 22 0 5 0.20 1 0 0 0 1 0 0
...............................................................................GCAGCAGCAACAGCAGCAGC............................................................. 20 0 20 0.10 2 0 0 2 0 0 0
..................................................................................GCAGCAACAGCAGCAGCAACAGCAAC.................................................... 26 0 17 0.06 1 0 0 0 0 1 0
.................................................................................................GGAACAGCAACAGCAGCACC........................................... 20 1 18 0.06 1 1 0 0 0 0 0
....................................................................................AGCAACAGCAGCAGCAACAGCAACAGC................................................. 27 0 18 0.06 1 0 0 1 0 0 0
..............................................................................................GCAGCAACAGCAACAGCAGC.............................................. 20 0 20 0.05 1 1 0 0 0 0 0
..................................................................................GCAGCAACAGCAGCAGCAACAGCA...................................................... 24 0 20 0.05 1 0 0 0 0 0 1
.....................................................................................GCAACAGCAGCAGCAACAGCA...................................................... 21 0 20 0.05 1 0 0 1 0 0 0
...........................................................................................GCAGCAGCAACAGCAACAGCAG............................................... 22 0 20 0.05 1 0 0 1 0 0 0
..............................................................................................GCAGCCACAGCAACCGCAGCATCAC......................................... 25 3 20 0.05 1 1 0 0 0 0 0
..................................................................................GGAGCAACAGCAGCAGCAACAGC....................................................... 23 1 20 0.05 1 1 0 0 0 0 0
...............................................................AGCATCAACAGCAGCAGCA.............................................................................. 19 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................AACAGCAGCAGCAACAGCAACAGC................................................. 24 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CTAGTCGGTAATCGAGTAGGCGACGCGAGAACCTAGACCGGCTTAGCCGTCACCGTATAGTTGTCGTAGTTGTCGTCGTCGTCGTCGTTGTCGTCGTCGTTGTCGTTGTCGTCGTGGTGGTTGTCGTTGTACGTTGCGACAGTGGGGGTTGGTGCGGGTG
**************************************************.......................((....((.((.((....)).)).))....)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 V112
male body
.........................................................................................................................................GAAAGTGGGGATTGGTGC..... 18 2 4 0.25 1 1 0 0
....................................................CAGTATAGTTGTCGTAAATG........................................................................................ 20 3 8 0.25 2 1 1 0
....................................................................................................................................GTTGGGCCAGTGGGGATTGG........ 20 3 5 0.20 1 0 1 0
....................................................CAGTATAGTTGTCGTAAATGT....................................................................................... 21 3 6 0.17 1 1 0 0
.........................................................................................................................................GAAAGTGGGGATTGGTGCCG... 20 3 7 0.14 1 1 0 0
......................................................GTATAGTTGTCGTAAATG........................................................................................ 18 2 9 0.11 1 1 0 0
..........................................................................................................................................AAAGTGGGGATTGGTGCC.... 18 3 20 0.10 2 2 0 0
..........................................................................................................................................AAAGTGGGGATTGGTGCGA... 19 3 10 0.10 1 0 0 1
.........................................................................................................................................GACAGTGGGGATTGGTGT..... 18 2 11 0.09 1 0 0 1
.................................................ACACAGTATAGTTGTCGTAA........................................................................................... 20 3 12 0.08 1 1 0 0
.....................................................................TTGTCGTCGTCGTCGTCGTT....................................................................... 20 0 20 0.05 1 1 0 0
......................................................................................GTTGTCGTCGTCGTTGTCGTT..................................................... 21 0 20 0.05 1 0 0 1
....................................................CAGTATAGTTGTCGTAAAT......................................................................................... 19 3 20 0.05 1 1 0 0
.......................................................TATAGTTGTCTGAGTGGTC...................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:5038085-5038244 - dps_1557 GATC---AG---CCA------------TTAGCTC---A-TCCGCT--------GCGCTCTTGG-AT--CTGGCCGAATCGGCAGTGGCATATCAACAGCAT--------------------------------------------------CAACAGCAG------------CA------G------CAGCA---GC---------AACAGCAGCAGCAACAGCAACA---GCAGCAC--------CA------CCAACAG-----CAAC---------------------------------------------------ATGCAACGCTGTCACCCCCAACCACGCC-CAC
droPer2 scaffold_1:6529473-6529614 - GATC---AG---CCC------------TTAGCTC---A-TCCGCT--------GCGCTCTTGG-AT--CTGGCCGAATCGGCAGTGGCATATCAACAGCAT--------------------------------------------------CAACAGCAG------------CA------G------CA------------------------GCA------GCAACA---GCAGCAC--------CA------CCAACAG-----CAAC---------------------------------------------------ATGCAACGCTGTCACCCCCAACCACGCC-CAC
droWil2 scf2_1100000004590:1401807-1401969 + CAAA---AA---CAA------------TTGGCTC---A-ACAACAG-------GCATTGCT----T--CTAGCCGAA-CAGCAGCAACAT--------C--AGGAGCATCAAAAG------------------------CAGCAT------CAACAGCAG------------CA------GCAAC---A------AC---------AGCAACAGCA------GCAACA---GCAGCAA--------CA------ACAACAG-----CAGCAA---------------CAACAT-----CAACAA-----------------------------CAACCGCAACAACAGC-CAC
droVir3 scaffold_12963:5431355-5431505 - CAGC---CA---CAA---------------GCTCCACA-TCGGCA--------GCTCTGCTCG-AT--CTGGCCGAGTCGGCAGCGGCATATCATCACCAT--------------------------------------------------CAGCAGCAG------------CA------A------CAG---CAAC---------TGCATCAGCA---------------GCAACAGCAGCAGCA--------GCAACAC-----------------------------C------------------------------ATGCCACTCTGTCGCCTCCGACCACGCC-CAC
droMoj3 scaffold_6500:18005073-18005255 - CGCC---A-------------------CTAGCTCCACA-TCGGCT--------GCGCTGCTTG-AT--CTAGCCGAATCGGCAGCAGCCTATCATCATCAT--------------------------------------------------CAACAGCAA------CAACTGCAGCAGCAG------CAG------------------------CAGCAACAGCAACA---GCATCA-----------------GCAACAGCAGCA-----G---------------CAACAA-----CAGCAA---CAGCAGCAACATC-ATGCTACTTTGTCGCCCCCAACCACGCC-CAC
droGri2 scaffold_15126:4354849-4355007 + CATC---CC---CT-------------CCAGCTCCACA-TCAGCA--------GCTTTGCTCG-AT--CTGGCGGAATCAGCAGCGGCATATCATCATCAT--------------------------------------------------CATCAGCAG------------CA------A------CA------AC---------TGCAACAGCAG------CAACT---ACAGCAT--------CA------GCAA--------------------CAGCAG---CAACAT-----C----------------------ATTCCACCTTGTCGCCTCCGACCACACC-AAC
droAna3 scaffold_13088:433007-433169 - CAGC---AG---CAA----CA------TCATCTC---AGTCAGCT--------TCTCTCCTTG-CC--CAGCATGACCCACCAGCAGC-------------ATCATCCCCAACAG------------------------CAGCAG------CATCAGCAG------------CA------GCAGC---A------GC---------AGCAGCAGCAG------CAACA---GCAGCAA--------CAGCAACATCAGCAGCAGCA-----G--------------------------GAGCAG--------------------------------CTGCAGCAGCATC-CAC
droBip1 scf7180000396569:811956-812115 + CATAACCAGCAGCAGAAT------------AATCTGCA-GCAGCA----------GCATCAGA-GT--CAGGCCCAA-----------------------------------C------------------------TGCAGCAG------------------CATCACCAGCA------ACAGA---AT---CAGC---------AACAAAAT---------CAGCA---ACAACAGCAGCAGCA--------GCATCAGCAA--------------CAGCAG---CAACAT-----CAACAA---------------C-AGCCAATGCCGTTGCCACC-----------AA
droKik1 scf7180000302270:909350-909488 - TGTC---CA---GCG------------GTAGCTC---A-TCGGCG--------GCCCTGTTGG-AC--CTGGCCGAATCGGCGGTGGCATATCAGCAGCAG--------------------------------------------------CAGCAGCA------------------------------------GT---------TGCAGCTGCA---------------GCAACAGCAGCAACA--------GCAAC--------------------------------------------------------------ATGCCACACTCTCGCCACCCACCACGCC-CAC
droFic1 scf7180000454044:491191-491347 - CCTC---GC---CCA--------------TGCTC---A-GCCTGAG---TGCTGCGCA---GG-ATTACCAGCAGCATCAGCAGCACC--AA--------------CAGC---------------------------------ATC---AGCAG---CACCAGCAACATCA------------------------GC---------AGCAGCAGCAGCAGCAACATCAGCAGCAACA-----------------GCAGCAG-----CATCAA---------------CAACAT-----CAGCAA--------------------------------CATCAACAGCACC-A--
droEle1 scf7180000491044:310350-310501 + GACC---AG---GCA------------GCAA--C---A-TCCACT--------GCCCACCAGC-CA--CCAAGTGCAACAGCAGCAGC--AG--------------CAGCATC------------------------------------AGCAGCAGCAT------CAGCAGCA---------------------GC---------ATCAGCAGCATCAACAGCAACA---TCATCAC--------CA------GCAGCAG-----CAACAG---------------CAACAC-----CAGCAT--------------------------------CAGCATCAGCAC----C
droRho1 scf7180000774573:130867-131015 - AATC---AT---T-----------------ACCC---A-CCCACGATCT----TCACTCCGA-------------AAGCAGCAGC--CA--------GC--AGCAACAGCAGC------------------------------AA------CAGCAGCAA------------CA------G------CAG---CAGC---------AACAGCAGCAGCAACAGCAACA---CCAGCCA--------CA------CCAGCAG-----CAACAG---------------CAACAC-----CAGCAA--------------------------------CAACAAA-GGACC-CAG
droBia1 scf7180000302126:1180549-1180692 - CAGT---AA---CCA---------------CCTC---C-TCCGCT--------CCACCGTT----A--CCAGTT-AACCAGCAGCAGC----------------------AACAG------------------------CAGCAACAGCAGCAG------------------CA------GCAGCAACAG---CAGC---------------------AACAGCAGCA---GCAGCTC--------CAGCAGCAGCAGCTCCAGCA-----G--------------------------CTCCAG--------------------------------CAGCAGCAGCACC-AGC
droTak1 scf7180000415872:839493-839653 - GAGC---AA---CGC------------GAGGCCC---G-TCTGCT--------GGACTTTGAGATA--CGCCGCCAGCAGAAGCGGGACGAG--------------CAGCAGC------------------------------------AGCAGCGCCAG------------CA------G------CAGCA---GC---------AACTGCAGCAGCACCGCGAGCA---GCAGCAC--------CA------CCAGCAG-----CAGCAG---------------CAGCGC-----GAGCAA--------------------------------CAGCAGCAGCACCGCGA
droEug1 scf7180000409711:262746-262893 + TAGT---TT---AGC----------CGCTGCCGC---A-TCTGT-------------------------------------------------------------------GC------------------------TGCAGCAG------------------CAACAGCAGCA------GCACCAACAG---CAGC------------AGCAG---------CAGCA---ACAACAGCAGCAGCA--------GCAACAGCACCA-----C---CAGCCGCTG---CATCAC-----ACACACCCA------------CA--GTCA----CCCGCCCACAGCCATGCC-CAC
dm3 chrX:4645446-4645596 - TC-----AGCTACTA---------------AGTC---C-CTCGCC--------CCTT--------T--CTTGCCGCAGCTGCAACAGC-------------TGCTGCCCCTGC------------------------AACATCGG------------------CAACAGCAGCA------ACAGCAACAG---CAGC---------------------AACAGCAACA---GCAGCAGCAGCAGCA--------GCAACATCAGCG-----C--------------------------CAGCAT--------------------------------CTGCAACAGCAGC-AAC
droSim2 2r:7610451-7610614 - GCCGTCCAGCATTTGAGCATATCGCCACA-------------------------GGCCCTTGG-CC--ACAGCAACATCGGCAGCAACTCGCC----------------CAAGAG------------------------CAGCAG------CAGCAGTAG------------CA------GCAAC---AG---CAGC------------------AGCAACAGCAGCA---GTAGCAG--------CC---ACAGTAGCAGCAGCA-----G------CATCAG---CGG-------------------------------------------CAGCAGCGACC-AGCC-AAC
droSec2 scaffold_15:1293628-1293784 + AGCC---AG---TTT------------GCTGCTC-------CACT---------CGCCCACGG-AG--TATTCCGAGGAA----C--CA---------C-----------AAC------------------------AACAGCAGC---AGCTT---CAA------------CA------ACAAC---AG---CAGC---------AGCAAAAACAG---------CA---GCAGCAG-----------------CAGCAA-----CAACAGCAGCAGCAGCAG---CAACAT-----ATGCAC---------------------------GCCTCAGCCAGACGAGCT-TAC
droYak3 3L:3771675-3771829 + CAGC---AG---CAG------------CAGGCGC---A-TCCACA--------CCAGGCCCAGATT--CTGGCCCATACGCACGTAGCCCACCAACAGCAA--------------------------------------------------CAACAGCAG------------CA------A------CAGCAGCAGC------------AGCAACAGACGCTCCAACA---GCATCT-----------------CCACCAGCAGCA-----G---------------CAACAG-----CAGT-------------------------------CG-CCGCATC-CCGCC-CA-
droEre2 scaffold_4690:9675556-9675731 - CAGC---AG---CAG------------CAAGCGC---A-ACAGTT--------GCC-------------------------------------------------GCCG------GGCGTTGGAGTTGCCAGCCCGCTGCAGCAG------------------CAACAACAGCA------GCAGCAACAG---CAGCAGCAACAACAGCAACAGCA------------------------GCAACA--------GCAACAGCAGCA-----G------CAGCAGCAGCAGCAGCTGATCAACAA---------------CG--GA---GGCGTCACCGCCG-GCACACC-CAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GATC---AG---CCA------------TTAGCTC---A-TCCGCT--------GCGCTCTTGG-AT--CTGGCCGAATCGGCAGTGGCATATCAACAGCAT--------------------------------------------------CAACAGCAG------------CA------G------CAGCA---GC---------AACAGCAGCAGCAACAGCAACA---GCAGCAC--------CA------CCAACAG-----CAAC---------------------------------------------------ATGCAACGCTGTCACCCCCAACCACGCC-CACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................AGCAT--------------------------------------------------CAACAGCAG------------CA------G------CAGCA---GC---------AA.................................................................................................................................................2620.5010000100000
..............................................................................................ACAGCAT--------------------------------------------------CAACAGCAG------------CA------G------CAG...................................................................................................................................................................2250.2010000001000
....................................................................................................................................................................................G------CAGCA---GC---------AACAGCAGCAGC.......................................................................................................................................20200.1020200000000
.............................................................................................................................................................................................GCA---GC---------AACAGCAGCAGCAACAGCAAC..............................................................................................................................26170.0610001000000
...............................................................................................................................................................................................A---GC---------AACAGCAGCAGCAACAGCAACA---GC........................................................................................................................27180.0610100000000
.....................................................................................................................................................................................................................GCAGCAACAGCAACA---GCAGC.....................................................................................................................20200.0510010000000
.............................................................................................................................................................................................GCA---GC---------AACAGCAGCAGCAACAGCA................................................................................................................................24200.0510000000001
...................................................................................................................................................................................................GC---------AACAGCAGCAGCAACAGCA................................................................................................................................21200.0510100000000
..................................................................................................................................................................................................................GCAGCAGCAACAGCAACA---GCAG......................................................................................................................22200.0510100000000
................................................................................................AGCAT--------------------------------------------------CAACAGCAG------------CA------G------CA....................................................................................................................................................................19200.0510000100000
..............................................................................................................................................................................................................AACAGCAGCAGCAACAGCAACA---GC........................................................................................................................24200.0510010000000
droPer2
GATC---AG---CCC------------TTAGCTC---A-TCCGCT--------GCGCTCTTGG-AT--CTGGCCGAATCGGCAGTGGCATATCAACAGCAT--------------------------------------------------CAACAGCAG------------CA------G------CA------------------------GCA------GCAACA---GCAGCAC--------CA------CCAACAG-----CAAC---------------------------------------------------ATGCAACGCTGTCACCCCCAACCACGCC-CACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................A------G------CA------------------------GCA------GCAACA---GCAGCAC--------CA------...................................................................................................22110.091010000
...............................................................................................CAGCAT--------------------------------------------------CAACAGCAG------------CA------G------CA------------------------GC..........................................................................................................................................22140.071010000
........................................................................................................................................................AACAGCAG------------CA------G------CA------------------------GCA------GCAACA---GCA.......................................................................................................................25200.051001000
droWil2
CAAA---AA---CAA------------TTGGCTC---A-ACAACAG-------GCATTGCT----T--CTAGCCGAA-CAGCAGCAACAT--------C--AGGAGCATCAAAAG------------------------CAGCAT------CAACAGCAG------------CA------GCAAC---A------AC---------AGCAACAGCA------GCAACA---GCAGCAA--------CA------ACAACAG-----CAGCAA---------------CAACAT-----CAACAA-----------------------------CAACCGCAACAACAGC-CACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................AACAGCAG------------CA------GCAAC---A------AC---------A..................................................................................................................................................19200.25500050
..........................................................................................................................................................................................................................................................................................................CAACAA-----------------------------CAACCGCAACAACA......2050.20101000
......................................................................................................................................................................................AAC---A------AC---------AGCAACAGCA------GCAACA---GC........................................................................................................................2460.17100010
..............................................................................................................................................................................................................................................................ACAACAG-----CAGCAA---------------CAACA.............................................................18200.15300030
.............................................................................................................................................................................A------GCAAC---A------AC---------AGCAACAGCA------GC.................................................................................................................................21200.15302010
..................................................................................................................................................................................................................................CA---GCAGCAA--------CA------ACAACAG-----CA.....................................................................................20200.10200020
.............................................................................................................................................................................................................................................A--------CA------ACAACAG-----CAGCAA---------------CAACA.............................................................21200.10200020
............................................................................................................................................AGCAT------CAACAGCAG------------CA------GCA..........................................................................................................................................................................19170.06100010
...............................................................................................................................................................................................................................CAACA---GCAGCAA--------CA------ACAACAG-----.......................................................................................21200.05101000
.............................................................................................................................................................................A------GCAAC---A------AC---------AGCAACAGCA------GCA................................................................................................................................22200.05101000
...............................................................................................................................................................G------------CA------GCAAC---A------AC---------AGCAACAGCA------GCA................................................................................................................................24200.05100010
...........................................................................................................................................................AGCAG------------CA------GCAAC---A------AC---------AGCAAC.............................................................................................................................................21200.05100001
......................................................................................................................................................................................................................CA------GCAACA---GCAGCAA--------CA------ACAA...............................................................................................21200.05100010
............................................................................................................................................................................CA------GCAAC---A------AC---------AGCAACAGCA------G..................................................................................................................................21200.05100001
...............................................................................................................................................................G------------CA------GCAAC---A------AC---------AGCAACAGCA------G..................................................................................................................................22200.05101000
.........................................................................................................................................................................................................................................AGCAA--------CA------ACAACAG-----CAGCAA---------------CAA...............................................................23200.05100010
...............................................................................................................................................AT------CAACAGCAG------------CA------GCAAC---A------..............................................................................................................................................................19200.05100001
............................................................................................................................................................................................................................................AA--------CA------ACAACAG-----CAGCAA---------------CAA...............................................................20200.05100010
..........................................................................................................................................................................................................................................GCAA--------CA------ACAACAG-----CAGCAA---------------C.................................................................20200.05100010
.........................................................................................................................................................ACAGCAG------------CA------GCAAC---A------AC---------AGCA...............................................................................................................................................21200.05100010
....................................................................................................................................................................................GCAAC---A------AC---------AGCAACAGCA------GC.................................................................................................................................20200.05100010
...................................................................................................................................................................................................................................A---GCAGCAA--------CA------ACAACAG-----CAGCAA---------------..................................................................23200.05101000
............................................................................................................................................................GCAG------------CA------GCAAC---A------AC---------AGCAACAGCA------...................................................................................................................................24200.05100010
...........................................................................................................................................................AGCAG------------CA------GCAAC---A------AC---------AGCAACAGCA------...................................................................................................................................25200.05100001
.................................................................................................................................................................................................................................ACA---GCAGCAA--------CA------ACAACAG-----CAG....................................................................................22200.05101000
................................................................................................................................................................................................................................AACA---GCAGCAA--------CA------ACAACAG-----C......................................................................................21200.05100010
droVir3
CAGC---CA---CAA---------------GCTCCACA-TCGGCA--------GCTCTGCTCG-AT--CTGGCCGAGTCGGCAGCGGCATATCATCACCAT--------------------------------------------------CAGCAGCAG------------CA------A------CAG---CAAC---------TGCATCAGCA---------------GCAACAGCAGCAGCA--------GCAACAC-----------------------------C------------------------------ATGCCACTCTGTCGCCTCCGACCACGCC-CACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................AGCAGCAGCA--------GCAACAC-----------------------------C------------------------------ATGCCACTCT......................2820.501000000000000000000000000000001000000000000000000000000000000000
..............A---------------GCTCCACA-TCGGCA--------GCT.........................................................................................................................................................................................................................................................................................................1820.501000000000100000000000000000000000000000000000000000000000000000
.......................................................TCTGCTCG-AT--CTGGCC.......................................................................................................................................................................................................................................................................................1620.501000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................ACAGCAGCAGCA--------GCAACAC-----------------------------C------------------------------................................2070.141001000000000000000000000000000000000000000000000000000000000000
...................................................................................................AT--------------------------------------------------CAGCAGCAG------------CA------A------CAG---CAAC---------...................................................................................................................................................21120.081000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CATCAGCA---------------GCAACAGCAGCAGCA--------GC.................................................................................................25170.061000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CATCAGCA---------------GCAACAGCAGCAGCA--------...................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GCAACAGCAGCAGCA--------GCAAC..............................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TCAGCA---------------GCAACAGCAGCAGCA--------...................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................A---------------GCAACAGCAGCAGCA--------GCA................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................AGCAGCAG------------CA------A------CAG---CAAC---------T..................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................AGCA---------------GCAACAGCAGCAGCA--------GCAAC..............................................................................................24200.051000000000000000010000000000000000000000000000000000000000000000
droMoj3
CGCC---A-------------------CTAGCTCCACA-TCGGCT--------GCGCTGCTTG-AT--CTAGCCGAATCGGCAGCAGCCTATCATCATCAT--------------------------------------------------CAACAGCAA------CAACTGCAGCAGCAG------CAG------------------------CAGCAACAGCAACA---GCATCA-----------------GCAACAGCAGCA-----G---------------CAACAA-----CAGCAA---CAGCAGCAACATC-ATGCTACTTTGTCGCCCCCAACCACGCC-CACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................AACAGCAACA---GCATCA-----------------GCAACAGC...........................................................................................2440.251000010
........................................................................................................................................................AACAGCAA------CAACTGCAGCAGCA.............................................................................................................................................................................22140.071000010
...........................................................................................................................................................................................................................................CA-----------------GCAACAGCAGCA-----G---------------CAACAA-----CAGCAA---CA............................................29200.051000010
.........................................................................................................................................................................................................................CAACAGCAACA---GCATCA-----------------GC.................................................................................................19200.051000001
...............................................................................................................................................................................................................................CAACA---GCATCA-----------------GCAACAGC...........................................................................................19200.051100000
...........................................................................................................................................................................................................................ACAGCAACA---GCATCA-----------------GCA................................................................................................18200.051000010
droGri2
CATC---CC---CT-------------CCAGCTCCACA-TCAGCA--------GCTTTGCTCG-AT--CTGGCGGAATCAGCAGCGGCATATCATCATCAT--------------------------------------------------CATCAGCAG------------CA------A------CA------AC---------TGCAACAGCAG------CAACT---ACAGCAT--------CA------GCAA--------------------CAGCAG---CAACAT-----C----------------------ATTCCACCTTGTCGCCTCCGACCACACC-AACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CAGC---AG---CAA----CA------TCATCTC---AGTCAGCT--------TCTCTCCTTG-CC--CAGCATGACCCACCAGCAGC-------------ATCATCCCCAACAG------------------------CAGCAG------CATCAGCAG------------CA------GCAGC---A------GC---------AGCAGCAGCAG------CAACA---GCAGCAA--------CAGCAACATCAGCAGCAGCA-----G--------------------------GAGCAG--------------------------------CTGCAGCAGCATC-CACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................AGTCAGCT--------TCTCTCCTTG-C................................................................................................................................................................................................................................................................................................1912.002020000
.....................................................................................................................................................................................................................GCAG------CAACA---GCAGCAA--------CAGCAACATCAGC..............................................................................................2911.001010000
.......................................................................................................................................................................................................................................................AGCAACATCAGCAGCAGCA-----G--------------------------GAGCAG--------------------------------CG...............2811.001010000
.............................................................................................................................................................................................................................................A--------CAGCAACATCAGCAGCAGCA-----G--------------------------GAGC...................................................2611.001000001
........................................CAGCT--------TCTCTCCTTG-CC--CAGCATG......................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................GCA-----G--------------------------GAGCAG--------------------------------CTGCAGCAGCATC-CAC2611.001010000
.............................................................................................................CAACAG------------------------CAGCAG------CATCAGCAG------------C....................................................................................................................................................................................2290.222000002
.................................................................................................................AG------------------------CAGCAG------CATCAGCAG------------CA------GCAGC---.....................................................................................................................................................................2480.131010000
...................................................................................................................................................................................................................................A---GCAGCAA--------CAGCAACATCAGCAGCA..........................................................................................2590.111000001
.............................................................................................................CAACAG------------------------CAGCAG------CATCAGCA..................................................................................................................................................................................................20200.102000011
...............................................................................................................ACAG------------------------CAGCAG------CATCAGCAG------------C....................................................................................................................................................................................20110.091000001
...........................................................................................................................................CAGCAG------CATCAGCAG------------CA------GCAGC---.....................................................................................................................................................................22160.061010000
...............................................................................................................................................................G------------CA------GCAGC---A------GC---------AGCAGCAGCAG------..................................................................................................................................22200.051100000
...............................................................................................................................................................................................................GCAGCAGCAG------CAACA---GCA.......................................................................................................................18200.051010000
....................................................................................................................................................................................................................AGCAG------CAACA---GCAGCAA--------CAGC.......................................................................................................21200.051010000
........................................................................................................................................................ATCAGCAG------------CA------GCAGC---A------GC---------AGCAGCAT...........................................................................................................................................26200.051010000
..........................................................................................................................................................CAGCAG------------CA------GCAGC---A------GC---------AGCAGCAGC..........................................................................................................................................25200.051100000
droBip1
CATAACCAGCAGCAGAAT------------AATCTGCA-GCAGCA----------GCATCAGA-GT--CAGGCCCAA-----------------------------------C------------------------TGCAGCAG------------------CATCACCAGCA------ACAGA---AT---CAGC---------AACAAAAT---------CAGCA---ACAACAGCAGCAGCA--------GCATCAGCAA--------------CAGCAG---CAACAT-----CAACAA---------------C-AGCCAATGCCGTTGCCACC-----------AASizeHit CountTotal NormTotal
No Reads
droKik1
TGTC---CA---GCG------------GTAGCTC---A-TCGGCG--------GCCCTGTTGG-AC--CTGGCCGAATCGGCGGTGGCATATCAGCAGCAG--------------------------------------------------CAGCAGCA------------------------------------GT---------TGCAGCTGCA---------------GCAACAGCAGCAACA--------GCAAC--------------------------------------------------------------ATGCCACACTCTCGCCACCCACCACGCC-CACSizeHit CountTotal NormTotal
No Reads
droFic1
CCTC---GC---CCA--------------TGCTC---A-GCCTGAG---TGCTGCGCA---GG-ATTACCAGCAGCATCAGCAGCACC--AA--------------CAGC---------------------------------ATC---AGCAG---CACCAGCAACATCA------------------------GC---------AGCAGCAGCAGCAGCAACATCAGCAGCAACA-----------------GCAGCAG-----CATCAA---------------CAACAT-----CAGCAA--------------------------------CATCAACAGCACC-A--SizeHit CountTotal NormTotal
No Reads
droEle1
GACC---AG---GCA------------GCAA--C---A-TCCACT--------GCCCACCAGC-CA--CCAAGTGCAACAGCAGCAGC--AG--------------CAGCATC------------------------------------AGCAGCAGCAT------CAGCAGCA---------------------GC---------ATCAGCAGCATCAACAGCAACA---TCATCAC--------CA------GCAGCAG-----CAACAG---------------CAACAC-----CAGCAT--------------------------------CAGCATCAGCAC----CSizeHit CountTotal NormTotal
No Reads
droRho1
AATC---AT---T-----------------ACCC---A-CCCACGATCT----TCACTCCGA-------------AAGCAGCAGC--CA--------GC--AGCAACAGCAGC------------------------------AA------CAGCAGCAA------------CA------G------CAG---CAGC---------AACAGCAGCAGCAACAGCAACA---CCAGCCA--------CA------CCAGCAG-----CAACAG---------------CAACAC-----CAGCAA--------------------------------CAACAAA-GGACC-CAGSizeHit CountTotal NormTotal
No Reads
droBia1
CAGT---AA---CCA---------------CCTC---C-TCCGCT--------CCACCGTT----A--CCAGTT-AACCAGCAGCAGC----------------------AACAG------------------------CAGCAACAGCAGCAG------------------CA------GCAGCAACAG---CAGC---------------------AACAGCAGCA---GCAGCTC--------CAGCAGCAGCAGCTCCAGCA-----G--------------------------CTCCAG--------------------------------CAGCAGCAGCACC-AGCSizeHit CountTotal NormTotal
No Reads
droTak1
GAGC---AA---CGC------------GAGGCCC---G-TCTGCT--------GGACTTTGAGATA--CGCCGCCAGCAGAAGCGGGACGAG--------------CAGCAGC------------------------------------AGCAGCGCCAG------------CA------G------CAGCA---GC---------AACTGCAGCAGCACCGCGAGCA---GCAGCAC--------CA------CCAGCAG-----CAGCAG---------------CAGCGC-----GAGCAA--------------------------------CAGCAGCAGCACCGCGASizeHit CountTotal NormTotal
No Reads
droEug1
TAGT---TT---AGC----------CGCTGCCGC---A-TCTGT-------------------------------------------------------------------GC------------------------TGCAGCAG------------------CAACAGCAGCA------GCACCAACAG---CAGC------------AGCAG---------CAGCA---ACAACAGCAGCAGCA--------GCAACAGCACCA-----C---CAGCCGCTG---CATCAC-----ACACACCCA------------CA--GTCA----CCCGCCCACAGCCATGCC-CACSizeHit CountTotal NormTotal
No Reads
dm3
TC-----AGCTACTA---------------AGTC---C-CTCGCC--------CCTT--------T--CTTGCCGCAGCTGCAACAGC-------------TGCTGCCCCTGC------------------------AACATCGG------------------CAACAGCAGCA------ACAGCAACAG---CAGC---------------------AACAGCAACA---GCAGCAGCAGCAGCA--------GCAACATCAGCG-----C--------------------------CAGCAT--------------------------------CTGCAACAGCAGC-AACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................GC---------------------AACAGCAACA---GCAGCAGC..................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000
...................................................................................................................................................................................................GC---------------------AACAGCAACA---GCAGCAGCA.................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CAGCAACA---GCAGCAGCAGCA..............................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050
..........................................................................................................................................................................................................................AACAGCAACA---GCAGCAGCAGC...............................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
................................................................................................................................................................................................................................AACA---GCAGCAGCAGCAGCA--------GCAACATC...........................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CAGCAACA---GCAGCAGCAGCAG.............................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................CAGCAACA---GCAGCAGCAG................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CAGCAACA---GCAGCAGCAGCAGC............................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................AGCAGCAGCA--------GCAACATC...........................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCAACA---GCAGCAGCAGCAGCA--------GCA................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................................................GC---------------------AACAGCAACA---GCAGCAGCAGCAGCA--------G..................................................................................................28140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................ACAGCAGCA------ACAGCAACAG---CAGC---------------------A......................................................................................................................................24160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ACAG---CAGC---------------------AACAGCAACA---GCAGCA....................................................................................................................24160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AGCAGCA------ACAGCAACAG---CAGC---------------------AACA...................................................................................................................................25180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................A------ACAGCAACAG---CAGC---------------------AACAGC.................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AGCAACAG---CAGC---------------------AACAGCAAC..............................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................AGC---------------------AACAGCAACA---GCAGCAGCAGCAGCA--------...................................................................................................28190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................CAACA---GCAGCAGCAGCAGCA--------GCA................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CA---GCAGCAGCAGCAGCA--------GCAA...............................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................G---CAGC---------------------AACAGCAACA---GCA.......................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GC---------------------AACAGCAACA---GCAGCAGCAGCAGCA--------...................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................CAACA---GCAGCAGCAGCAGCA--------GCAAC..............................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................AGCAGCA------ACAGCAACAG---CAG.............................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CAGCA------ACAGCAACAG---CAGC---------------------AA.....................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GCAACA---GCAGCAGCAGCAGCA--------GCAAC..............................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AG---CAGC---------------------AACAGCAACA---GCAGCAGCAGC...............................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AGCAGCA------ACAGCAACAG---C...............................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GCAGCAGCAGCA--------GCAACATCAG.........................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................CA---GCAGCAGCAGCAGCA--------GCAAC..............................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................G---CAGC---------------------AACAGCAACA---GCAGCAGCAGC...............................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AGCA------ACAGCAACAG---CAGC---------------------AACA...................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CAACA---GCAGCAGCAGCAGCA--------G..................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AACA---GCAGCAGCAGCAGCA--------GC.................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AG---CAGC---------------------AACAGCAACA---GCAG......................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................A------ACAGCAACAG---CAGC---------------------AACAG..................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................C---------------------AACAGCAACA---GCAGCAGCAGCAGC............................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................ACA---GCAGCAGCAGCAGCA--------GCA................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........................................................................................................................................................................GCAGCA------ACAGCAACAG---CA..............................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AG---CAGC---------------------AACAGCAACA---GC........................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CAGCAGCAGCAGCA--------GCAA...............................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CAACA---GCAGCAGCAGCAGC............................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCCGTCCAGCATTTGAGCATATCGCCACA-------------------------GGCCCTTGG-CC--ACAGCAACATCGGCAGCAACTCGCC----------------CAAGAG------------------------CAGCAG------CAGCAGTAG------------CA------GCAAC---AG---CAGC------------------AGCAACAGCAGCA---GTAGCAG--------CC---ACAGTAGCAGCAGCA-----G------CATCAG---CGG-------------------------------------------CAGCAGCGACC-AGCC-AACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................ACAGCAACATCGGCAGC............................................................................................................................................................................................................................................................................1740.25100000000001000000
droSec2
AGCC---AG---TTT------------GCTGCTC-------CACT---------CGCCCACGG-AG--TATTCCGAGGAA----C--CA---------C-----------AAC------------------------AACAGCAGC---AGCTT---CAA------------CA------ACAAC---AG---CAGC---------AGCAAAAACAG---------CA---GCAGCAG-----------------CAGCAA-----CAACAGCAGCAGCAGCAG---CAACAT-----ATGCAC---------------------------GCCTCAGCCAGACGAGCT-TACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................CAGCAA-----CAACAGCAGCAGCAG........................................................................21200.2040040
..................................................................................................................................................................................................................................................................CAA-----CAACAGCAGCAGCAGC.......................................................................19200.1020020
................................................................................................................................................................................................................................................................AGCAA-----CAACAGCAGCAGCAG........................................................................20200.0510100
...........................................................................................................................................................................................................................................CAG-----------------CAGCAA-----CAACAGCAG..............................................................................18200.0510010
....................................................................................................................................................................................................................AACAG---------CA---GCAGCAG-----------------CAGCAA-----C......................................................................................21200.0510010
........................................................................................................................................................................................................................G---------CA---GCAGCAG-----------------CAGCAA-----CAACAGC................................................................................23200.0510010
..............................................................................................................................................................AA------------CA------ACAAC---AG---CAGC---------AGCA...............................................................................................................................................19200.0510010
.................................................................................................................................................................................................................................................................GCAA-----CAACAGCAGCAGCAGC.......................................................................20200.0510001
droYak3
CAGC---AG---CAG------------CAGGCGC---A-TCCACA--------CCAGGCCCAGATT--CTGGCCCATACGCACGTAGCCCACCAACAGCAA--------------------------------------------------CAACAGCAG------------CA------A------CAGCAGCAGC------------AGCAACAGACGCTCCAACA---GCATCT-----------------CCACCAGCAGCA-----G---------------CAACAG-----CAGT-------------------------------CG-CCGCATC-CCGCC-CA-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................GC------------AGCAACAGACGCTCCAACA---GC........................................................................................................................2311.00101000000000
................................GC---A-TCCACA--------CCAGGCCCAGATT--CT...........................................................................................................................................................................................................................................................................................2411.00101000000000
.............AG------------CAGGCGC---A-TCCACA--------CC..........................................................................................................................................................................................................................................................................................................1811.00101000000000
.........................................................................................................................................................................................................................................................................A-----G---------------CAACAG-----CAGT-------------------------------CG-CCGCAT...........2011.00100000010000
.......AG---CAG------------CAGGCGC---A-TCCACA--------CC..........................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................................................................................ACCAACAGCAA--------------------------------------------------CAACAGCAG------------C....................................................................................................................................................................................2140.25101000000000
.............................................................................................AACAGCAA--------------------------------------------------CAACAGCAG------------CA------A------CAGC..................................................................................................................................................................24100.10101000000000
...............................................................................................................................................................................................................................................................CACCAGCAGCA-----G---------------CAACAG-----C......................................................19200.10202000000000
.................................................................................................GCAA--------------------------------------------------CAACAGCAG------------CA------A------CAGCAGCAGC------------A...............................................................................................................................................27180.06101000000000
............................................................................................CAACAGCAA--------------------------------------------------CAACAGCAG------------CA------.............................................................................................................................................................................20200.05101000000000
...................................................................................................AA--------------------------------------------------CAACAGCAG------------CA------A------CAGCA.................................................................................................................................................................19200.05101000000000
........................................................................................................................................................AACAGCAG------------CA------A------CAGCAGCAGC------------AGC.............................................................................................................................................24200.05101000000000
........................................................................................................................................................AACAGCAG------------CA------A------CAGCAGCAGC------------AG..............................................................................................................................................23200.05101000000000
.............................................................................................................................................................................A------A------CAGCAGCAGC------------AGCAAC..........................................................................................................................................18200.05100000100000
.............................................................................................................................................................CAG------------CA------A------CAGCAGCAGC------------AGC.............................................................................................................................................19200.05100010000000
...................................................................................................AA--------------------------------------------------CAACAGCAG------------CA------A------CAGCAG................................................................................................................................................................20200.05101000000000
..............................................................................................................................................................AG------------CA------A------CAGCAGCAGC------------AGCA............................................................................................................................................19200.05101000000000
....................................................................................................A--------------------------------------------------CAACAGCAG------------CA------A------CAGCAGCA..............................................................................................................................................................21200.05101000000000
.............................................................................................................................................................................A------A------CAGCAGCAGC------------AGCAACA.........................................................................................................................................19200.05101000000000
.................................................................................................................................................................................................................................................................CCAGCAGCA-----G---------------CAACAG-----CA.....................................................18200.05100000100000
droEre2
CAGC---AG---CAG------------CAAGCGC---A-ACAGTT--------GCC-------------------------------------------------GCCG------GGCGTTGGAGTTGCCAGCCCGCTGCAGCAG------------------CAACAACAGCA------GCAGCAACAG---CAGCAGCAACAACAGCAACAGCA------------------------GCAACA--------GCAACAGCAGCA-----G------CAGCAGCAGCAGCAGCTGATCAACAA---------------CG--GA---GGCGTCACCGCCG-GCACACC-CACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................ACA--------GCAACAGCAGCA-----G------CAGC.......................................................................20200.1530100110
........................................................................................................................................................................................................AACAACAGCAACAGCA------------------------GCAACA--------...................................................................................................2280.1310010000
...................................................................................................................................................................................................GCAGCAACAACAGCAACAGCA------------------------GCA..............................................................................................................24120.0810000010
.....................................................................................................................................................................................................AGCAACAACAGCAACAGCA------------------------GCA..............................................................................................................22160.0610000010
.....................................................................................................................................................................ACAACAGCA------GCAGCAACAG---C...............................................................................................................................................................20200.0511000000
..................................................................................................................................................................................................................ACAGCA------------------------GCAACA--------GCAACAGC...........................................................................................20200.0510100000
........................................................................................................................................................................................................................................................................CA-----G------CAGCAGCAGCAGCAGCT..........................................................20200.0510100000
.......................................................................................................................................................................................................CAACAACAGCAACAGCA------------------------GCA..............................................................................................................20200.0510001000
..................................................................................................................................................................................................................................................AACA--------GCAACAGCAGCA-----G------CAGC.......................................................................21200.0510001000
.................................................................................................................................................................................................................................................CAACA--------GCAACAGCAGCA-----G------CAG........................................................................21200.0511000000
.....................................................................................................................................................................ACAACAGCA------GCAGCAACAG---CAG.............................................................................................................................................................22200.0511000000
.....................................................................................................................................................................................................................................................A--------GCAACAGCAGCA-----G------CAGCAGCAGCA................................................................25200.0510000100
.....................................................................................................................................................................................................................................................A--------GCAACAGCAGCA-----G------CAGCAGC....................................................................21200.0510001000
.......................................................................................................................................................................................GCAACAG---CAGCAGCAACAAC...................................................................................................................................................20200.0511000000
.......................................................................................................................................................................................................CAACAACAGCAACAGCA------------------------GC...............................................................................................................19200.0510001000
..................................................................................................................................................................................................................................................AACA--------GCAACAGCAGCA-----G------CA.........................................................................19200.0510000010
....................................................................................................................................................................................................................AGCA------------------------GCAACA--------GCAACAGCAGCA-----G------CA.........................................................................25200.0511000000
...................................................................................................................................................................................................................................................ACA--------GCAACAGCAGCA-----G------CAGCA......................................................................21200.0510000010
................................................................................................................................................................................................................................................................AACAGCAGCA-----G------CAGCAGCAGCA................................................................22200.0511000000

Generated: 05/18/2015 at 12:58 AM