dps_1546

CDS [Dpse\GA22084-cds]; exon [dpse_GLEANR_2003:2]; exon [dpse_GLEANR_2003:3]; CDS [Dpse\GA22084-cds]; intron [Dpse\GA22084-in]

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	-

##################################################---------------------------------------------------------------------------------------------------------################################################## TAAGCTTACACACAGTTTCTATGAGAAGCGACGAAAACTTCTGGCCAAAAGTCAGCAGCAACAGCAGTCTCCCAAACGTCAGCCACAGCAGCAGCAGCAGCTACAACAGCAACAGCAGCAGCCACAATACCTCCAGCAGCAACAGCAAGAACAAGTGCTGCGGCAACGTTCCCCCAACTTTTCTCTTCCACTACAAAACAACTCA ************************************************....((.((....)).))...................((.((.((....(((.....)))....)).)).))................((....)).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M062 head	M040 female body	GSM343916 embryo
..................................................................................................AGCTACAACAGCAACAGCAGC......................................................................................	21	0	1	1.00	1	1	0	0
................TTCTAAGAGACGCGACAAAA.........................................................................................................................................................................	20	3	9	0.11	1	0	1	0
................................................................................................................................................GCAAGAACAAGTCCGGCGGT.........................................	20	3	18	0.06	1	0	1	0
.....TCACAGACAGTTTTTATGAG....................................................................................................................................................................................	20	3	20	0.05	1	0	0	1

ATTCGAATGTGTGTCAAAGATACTCTTCGCTGCTTTTGAAGACCGGTTTTCAGTCGTCGTTGTCGTCAGAGGGTTTGCAGTCGGTGTCGTCGTCGTCGTCGATGTTGTCGTTGTCGTCGTCGGTGTTATGGAGGTCGTCGTTGTCGTTCTTGTTCACGACGCCGTTGCAAGGGGGTTGAAAAGAGAAGGTGATGTTTTGTTGAGT ************************************************....((.((....)).))...................((.((.((....(((.....)))....)).)).))................((....)).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	GSM343916 embryo	SRR902011 testis	V112 male body
..........GTGTCTAAGATTCTCTGCGCTG.............................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0
..........................TCGGTGCTTTTGAAGACCT................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0
.............................................................................................................................................................................AGTTGAAAAGATAAAGTGATGT..........	22	3	6	0.17	1	1	0	0	0
.......................................................................................................................................................................CAAGGGGGTTGATGAGAG....................	18	2	8	0.13	1	1	0	0	0
........................................................................................................................................................................AATGGGGTTGAAGAGAGGAG.................	20	3	11	0.09	1	1	0	0	0
..................................................................................................................................GAGGTCGTCGTTGTCGTTT........................................................	19	1	11	0.09	1	0	0	1	0
..........................................................................................................GTCTTTGTGGACGTCGGTGTTA.............................................................................	22	3	16	0.06	1	1	0	0	0
......................................................................................................................................................................GCTAGGGGGTTGATTAGAG....................	19	3	18	0.06	1	0	0	0	1
.....................................................................................................................CGTCGGTGCTAAGGAGTTC.....................................................................	19	3	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
dp5	4_group3:4012653-4012857 -	dps_1546	TAAG--CTTACA-CACAGT------------------TTCTATGAG-------AAGCGACGAAAACTTCT------------------------------GGCCAAAAGTCAGC---------------------------------------------------------------------------------------------------------AGCAACAGCAGTCTCCCAAACG---TCAGC------------------------------------------------CA-------------CAGCAGCAGC---AGCAGCTACAAC------AGCAACA------GCAGCAGCC------ACAATACCTCCA---G---------------------------------------------------------------CAGCAAC------AGC---------------AAGAACAAGTGCT------GCGGCAACGTTCCCC-CAACTTTTCTCTTCCACTAC---------------------------------------------AA----AACAACTCA
droPer2	scaffold_1:5485463-5485673 -		TAAG--CTTACA-CACAGT------------------TTCTATGAG-------AAGCGACGAAAACTTCT------------------------------GGCCAAAAGTCAGC---------------------------------------------------------------------------------------------------------AGCAACAGCAGTCTCCCAAACG---TCAGC------------------------------------------------CA-------------CAGCAGCAGC---AGCAGCTACAAC------AGCAACA------GAAGCAGCC------ACAATACCTCCA---G---------------------------------------------------------------CAGCAGCAGCAACAGCA---------------AGAACAAGTGCT------GCGGCAACGTTCCCC-CAACTTTTCTCTTCCACTAC---------------------------------------------AA----AACAACTCA
droWil2	scf2_1100000003625:666-853 +		ACAA--CAACTG-CA------------------------------G-------CAGCAACAAC--------------------------------------------------------------------AACAGCA---GCAACAACAACAGCAGCAGC----------------------------------------------------------------AACAACAGCA---------TCA------------------------GCA------------ACAGC---AACA-GCAGCAACGAATGCAACAGC---------AACAGCAACAGCAACAGCA---------ACAGCAGCA------ACAA---TTG------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGCA---------------GCAACAATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------AA---CAACAACTGC
droVir3	scaffold_12723:4020865-4021080 -		ACAG--TTGCTC-CA------------------------CCAGCAG-------------C-----------------------------------------------------------------AGC---AACAGCA---GCTGCA---GCAG------CAAC-------AACAGCAG------------------------------------------CAACAACAGCA---------------------------------------ACA------------AAGAC---TCTA-CCAGCAACAGATGCAGCAGC---------AGCAACAGCTGCAACAGCA---------GCAGCAGCT------ACAG---------------------------------------------------------CAGCAGCAACAGCAACAGCTGCAGCAGCAACAGCA---------------------ACAGCT------GCAGCAGCAATCCTCGCTGCACTCCTCGCCCAG--------------------------------------------TCACAA----TACCACGAG
droMoj3	scaffold_6540:28255802-28255997 +		GAAG--CAACAG-CAGAGA------------------GAACAGCA------------------------------------------------------------------------------GCAAC---------------TGCA---ACAG------CAGC-------AACAGCAG----------------CAACAACAGCAGCAACT-----------------------------------------------------------GCA------------------A-------------------CA------------------------------------------GCAGCAACA------ACA------------GCAGCAA------------CTG----------------C--AACAGCAGCAACAACATCAGCAACAGCAACAGC---AGC---------------AGCAACAAGGAGT------GCAGCA-----------------------------AGCAGCAACTCCAA----------TAATTTCA---GTTTCAGCTTCGAG--GAAAAACTCA
droGri2	scaffold_14906:10883058-10883239 -		CT----CATGCG-CATGCC------------------CTACAGCA----------G--------------------------------------------------------------------CAACAACAGCAGCA---GCAACAGCAACAGCAGCAGC-----------------------------ATCAT---------------CATGTGCTG--------------------------CA----------------------------------------------------------------------GCTAC---A---------------------ACA------CCAGCAGCAGCAACAACAACAACAACA---GCAGCAG------------CAG----------------CAG-----CAGCAGCAACAACAACACTTGCAGCACCAGCAACT---------------------TCACAT------GCA----------------------------------------------ACAAC---------------------------AT----ATGCACACG
droAna3	scaffold_13266:3688208-3688396 -		CAAG--CCCTCGGTG---G------------------TGACCTGAT-------GAGCTTCCAGCACATGTGGCCTGCGGCTGGCTTCAGCCA----GTCTCCCCAG------------------CAAC--------------------------------------------------------AGCAG------CAGC------AG---------------------------------------------------------------------------------------------------------CAGCCGC------------AACAGC------AGCAACAGGCATCG---------------------------------------------------------------------------CAGCAACAACAACAGCAGCAGCAGCAGCAACCGCA---------------------ACAGGG------TCA------AGCAAA-TCCTA----GCGATCCTC-----------------------------------------------A----CAACTATAAC
droBip1	scf7180000394357:6088-6272 +		GAAG--ATACAA-CAGTAA------------------TA------G-------------A-----------------------------------------------------------------TAC---AA---CAACAGTAGAAGAC-----------------------------ACAA--------------------------------------CAGCAACAGATCCATCA------GCA---------------------------------------------ACAGATA-------------CAACAACAGT---AGAAGATACAAC------AGCAACA------GGCACAG---------------------------------------------------------------------CAATAGATACAA------CAGCAACAGGAATAGCA---------------------ACAGCT------AAAGCAACAAGTTTT-TATTTATTTTCAACCCCCCC---------------------------------------------AC----ATCAAC--T
droKik1	scf7180000302685:196260-196453 +		ACAG--CATTTA-CA------------------------GCAGCAG-------------C-----------------------------------------------------------------AAC---AACA------------GCATTTACAGC----------------------------------------------------------------------------------A---GCAG---CAGCATTTACAGCAGCAGCAACAACAGCATCTACAGCAGC---AGCA-ACAACAGCATTTACAGCAGC------------AGCAGC------AGCAGCA------------TTT------ACAG---------------------------------------------------------CAGCAGCAGCAACAGCATCTACAGCAGCAGCAGCA---------------------ACATCA------CCAGCAGCA-------------------------------------------AC---------------------------AACAACAGCATCTAC
droFic1	scf7180000453438:44369-44588 -		CAACAGCAATCG-CA--AC------------------A-GGAGTCG-------------G-----------------------------------------------------------------GAC---AA------------CAGCAACAGCAGCAGCAAC-------AAAATCAG----------------C-----------------------AGCAGCAGCAGCAACAGGATCATCAGCA---------------------------------------------GCAGCA-------------------GCAAC---AACAACAACAAT------CGCAACA------------------------------------GCAACAGCAGCAGCAGCAGCAA------------------------------------------CAGCAGC------AGC---------------AAGAACAGAAACCACAGCCAAAGCAACAA------CAACTATGTGTAACGTT-------------------------------GCT---GTGTTAACTGCAA---CAACAGCTCA
droEle1	scf7180000491080:1014414-1014622 -		TCGCCTCATCCA-CA--CC------------------GTCTGTCGT-------CCTCGTCGACGCCGCCG------------------------------GCCCTGCAGCATGCCCTGCAGCAGCAGC------------------------------AGCAGCACAT-----------GCTG-----------------------------------------------C---------A---GCAG---CAGCACCTGCAGCAGCAGCTGCA-------------------------------------------------------------------------ACA------CCAGCAGCA------ACA------------G-------------------------------------CAT-----CAGCAGCAACAG------CAGCAGCAGCAGCAGCAGCAGCTGCAGCACCACCAACTCG--------------------------------CTCACCCCCACCAG---------------------------------------------CC----GCCCACTCC
droRho1	scf7180000780277:36632-36831 -		GCAG--CTGCAG-TAG------------------------CA-------------------GCA-----------------------------------------------------------GCAGC---AG---CA------------ACGC------TAGC-------GTCGGCAG------------------------------------------CGACGGCAGCAGCATGT---------------------------------CCA------------------AAACAAG-------------CAGCGGTAAT---CCA-AGTGCAGC------AGCAACA------CAAGCAGCA---------------------GCAGCAGCAGCAGCGGCTGCAG------------------------------------------CAGCAGC------AGC---------------AAGTGCAACAAAT-----------------------------------------GCCGCCAATGCCGC----------CGATTTCAGTGCGTTCGACTTTAA---CGATAGTTCC
droBia1	scf7180000302193:4810255-4810456 +		AAGCTGCAACAG-CA----------------------------------------------ACAAC--------------------------CAG----------------GGA-----------AAT---AA---------------CAGCAGTCACATC--------------------GATAGCAG------CAAC------AG---CAACAGCAA-----------CAG------------CAGCAACACCA-------------------------------------------------------------------------------------------GCT------GCAACAACA------ACAACAACACGA---GCAGCATTAGCAACAACCAGGG----------------AAG-----TAACAGCGACAACAACACATGCTGCAACAGCAACA---------------------ACATTA----------------------GAA---------------------------------------------TCT---GTTCCAGCTGCAGCACTAGCAGCTGC
droTak1	scf7180000415211:46980-47184 -		ACAA--TTTGTA-CAAGGT------------------GA------AGTACAAGAAGC-ACAAGAA-------------------------------GACCAACCAGAA----GC--------AGCAGC------------------------------AGCAGGCC---GC--------CCAG--------------------------------------------------------CA---GCAG---C------------------------------------------AGCA----------------GCAGCAACAGGCGGCGGCGCAGC------AGCAACA------CCAGCAGCA------GCAGCAACATCAGCAGCAGCAG------------CAA----------------CAT-----CAGCAGCACCAG------CAGCTGCACTCGCCGCT---------------------GC--------------------------------ACCATCACCACCAC---------------------------------------------CA----GGTGGGTCA
droEug1	scf7180000408193:273985-274186 +		TCAG--CATCCA-CCCAGC------------------TTGCATCAG-------CAGCAGCAGCAAC--------------------------CGCC----GCCGCCTTCTCAGC-----------------------------AGCAGCAGCAGTTGCATCAGCTTAAATC--------ACCGCAGCAGCATCAG---------------CAACAGTTG---------------------------------------------------------------------------------------------CAGCAGC---------AGCA------------------------CCAGCAACA------ACAA---CAT---------------------------------------------------CACCAGCAGCAGCAACAGCAGCAACATCAGCAACA---------------------TCACCA------GCA----------------------------------------------GCAGCAACAGC---------------------AA----AACGAATCG
dm3	chrX:21204269-21204488 -		CCAG--CATCCA-CCCAGC------------------TTGCATCAG-------CAACAGCAGCAAC--------------------------CACC----GCCCCCCTCGCAGC-----------------------------AGCAGCAACAGCTGCATCAGCTCAAGTC--------CCCGCAACAGCACCAG---------------CAACAGCTG--------CAGCAGCAC---------------CAGCA-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCAACACCACCA---GCAGCAA------------CAT----------------CAC-----CAGCAGCAACAC------CAGCAGCAACAGCAGCA---------------------ACACCA------TCA----------------------------------------------GCAGCAACAGC---------------------CA----AACGAATCG
droSim2	x:19937174-19937375 -		CCAG--CATCCA-CCCAGC------------------TTGCATCAG-------CAACAGCAGCAAC--------------------------CCCC----GCCCCCCTCGCAGC-----------------------------AGCAGCAACAGCTGCATCAGCTCAAGTC--------CCCGCAGCAGCACCAG---------------CAACAGCTG---------------------------------------------------------------------------------------------CAGCAGC---------ACCAGCAGC------AGCAGCA------------------------C---CAT---------------------------------------------------CAGCAGCAACATCACCAGCAGCAACAGCAGCAGCA---------------------ACACCA------TCA----------------------------------------------GCAGCAACAGC---------------------CA----AACGAATCG
droSec2	scaffold_2:2891452-2891644 -		GCAG--CAC-------------------------------TATCCG-------CAGCAACAAC--------------------------------------------------------------------ATCTGCA---GCAGCAGCAACAGCAGCAGCATCAC---GC--------CCAG--------------------------------------------------------------CAGCAACATCA---------------------------------GCAGCAGCA----------------GCAGC---------------AAC------AGCAGCA------G------CA---------------------GCAGCAG------------CACTGGGACTACTATGCCA---GGCAGCAGCAGCAACATCAACAGCAGCAGCAGCAACAGCA---------------------ACAGC--------CA----------------------GCGGCCGCC-----------------------------------------------A---CCGGCAACACC
droYak3	2R:2253583-2253787 +		GCAG--CTGGCCGTCCAGCATTTGAGCATATCGCCCCA-GGCC-CT-------------G-----------------------------------------------------------------GGC---CA------------CTGCAACACCGGCAGCAACTC---GC--------CCAA---GAGCAGC--------------------------AGCAGCA---G------------------C------------------------------------------------CA-------------CAGCAGCAAC---AGCAGCAACAGC------AGCAGCA------GCAGCAGCC------ACAGTAGCAGCA---GCAGCAA---------------------------------------------CAG---------CATCAGCAGCTCCAGCG---------------------GCAGCG------GCAGCAGCGA---------------CCAGCCAACAC----------------------------------------------------ACAGCAAC
droEre2	scaffold_4690:5954339-5954517 +		CAGCAGAAACAG-TA--TC----------------------AGGAG-------AAGCAAAAGCTAATGCT------------------------------G--------------------------------------------CAGCAACAGCAGCAG-------------------------------------------------------------CAACAGCAGCAG------------CAACAACAGCA------------------------------------------G-------------CTGCAGCAGC---AGCAACAACAGC------AGCTACAG---CAGCAGCAACA------ACAG---CAGCT---G-------------------------------------CAG-----CAGCAGCAACAA------CAGCAGCTGCAGCAGCA---------------------ACAACT------GCA----------------------------------------------GCAGC------------------------------------AAC--T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

TAAG--CTTACA-CACAGT------------------TTCTATGAG-------AAGCGACGAAAACTTCT------------------------------GGCCAAAAGTCAGC---------------------------------------------------------------------------------------------------------AGCAACAGCAGTCTCCCAAACG---TCAGC------------------------------------------------CA-------------CAGCAGCAGC---AGCAGCTACAAC------AGCAACA------GCAGCAGCC------ACAATACCTCCA---G---------------------------------------------------------------CAGCAAC------AGC---------------AAGAACAAGTGCT------GCGGCAACGTTCCCC-CAACTTTTCTCTTCCACTAC---------------------------------------------AA----AACAACTCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................AGCTACAAC------AGCAACA------GCAGC...........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

TAAG--CTTACA-CACAGT------------------TTCTATGAG-------AAGCGACGAAAACTTCT------------------------------GGCCAAAAGTCAGC---------------------------------------------------------------------------------------------------------AGCAACAGCAGTCTCCCAAACG---TCAGC------------------------------------------------CA-------------CAGCAGCAGC---AGCAGCTACAAC------AGCAACA------GAAGCAGCC------ACAATACCTCCA---G---------------------------------------------------------------CAGCAGCAGCAACAGCA---------------AGAACAAGTGCT------GCGGCAACGTTCCCC-CAACTTTTCTCTTCCACTAC---------------------------------------------AA----AACAACTCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

ACAA--CAACTG-CA------------------------------G-------CAGCAACAAC--------------------------------------------------------------------AACAGCA---GCAACAACAACAGCAGCAGC----------------------------------------------------------------AACAACAGCA---------TCA------------------------GCA------------ACAGC---AACA-GCAGCAACGAATGCAACAGC---------AACAGCAACAGCAACAGCA---------ACAGCAGCA------ACAA---TTG------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGCA---------------GCAACAATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------AA---CAACAACTGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGGCA------GCAACAACA-----------------ACA--------------------G..............................................	23	20	0.70	14	0	14	0	0	0
..............A------------------------------G-------CAGCAACAAC--------------------------------------------------------------------AACAGCA---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA-----------------ACA--------------------GC------------------------------AA---CAACAACTG.	23	20	0.20	4	0	4	0	0	0
........................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAACAGCA---------ACA.............................................................................................................................................................................................................................................	22	20	0.20	4	0	1	0	0	3
........................................................CAACAAC--------------------------------------------------------------------AACAGCA---GCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0
.............................................................AC--------------------------------------------------------------------AACAGCA---GCAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................AACAGC---------AACAGCAACAGCAACA............................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	3	0
........................................................CAACAAC--------------------------------------------------------------------AACAGCA---GCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................A------ACAA---TTG------------------------CAG----------------CAA-----CAACAGCA............................................................................................................................................................	22	20	0.15	3	0	1	0	2	0
..........................................................................................................................................................................................................................................................................................................................ACAGC---------AACAGCAACAGCAACA............................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------...............	24	20	0.15	3	0	2	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AG----------------CAA-----CAACAGCAAC---------------------AGCA---------------GC................................................................................................................	21	20	0.15	3	0	2	0	1	0
...............................................................................................................................................................................................................................................................................................................CAACGAATGCAACAGC---------AACAGCAAC...................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0
....................................................................................................................................................................................................................................................TCA------------------------GCA------------ACAGC---AACA-GCAGCAACGAA..............................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GCAACAACA-----------------ACA--------------------GC------------------------------AA---CAACAACTG.	26	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----CAACAGCAAC---------------------AGCA---------------GCAAC.............................................................................................................	21	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAAC---------------------AGCA---------------GCAACAATGGC.......................................................................................................	24	20	0.10	2	0	2	0	0	0
..............................................................................................................................................CAACAACAACAGCAGCAGC----------------------------------------------------------------AAC................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAAC---------------------AGCA---------------GCAACAATGG........................................................................................................	23	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................A------------------------GCA------------ACAGC---AACA-GCAGCAACG................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	0	1	0
................................................................................................................................................................C----------------------------------------------------------------AACAACAGCA---------TCA------------------------GCA------------ACAGC---AACA-G........................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................CAACAGCA---------TCA------------------------GCA------------ACAGC---AACA-GCAG.....................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
....................................................................................................................................................CAACAGCAGCAGC----------------------------------------------------------------AACAACAGCA---------TCA------------------------G....................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
................................................................................................................................................................C----------------------------------------------------------------AACAACAGCA---------TCA------------------------GCA------------ACAGC---..............................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
..........TG-CA------------------------------G-------CAGCAACAAC--------------------------------------------------------------------AACAGCA---GCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	0	1	0
..AA--CAACTG-CA------------------------------G-------CAGCAACAAC--------------------------------------------------------------------AACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA---------ACAGCAGCA------ACAA---TT........................................................................................................................................................................................................................	25	16	0.06	1	0	0	0	1	0
...................................................................................................................................................................................................................................CAACAGCA---------TCA------------------------GCA------------ACAGC---..............................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
.......................................................................................................................................................................................................................................AGCA---------TCA------------------------GCA------------ACAGC---AACA-GCAG.....................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
..........................................................................................................................................................................................................................................A---------TCA------------------------GCA------------ACAGC---AACA-GCAGCAAC.................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
......................................................................................................................................AGCA---GCAACAACAACAGCAGCAGC----------------------------------------------------------------AA.................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CAACAGCAAC---------------------AGCA---------------GCAACA............................................................................................................	21	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------------------AGCA---------------GCAACAATGG........................................................................................................	20	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCA------GCAACAACA-----------------ACA--------------------GC------------------------------AA---CAA.......	23	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCA---------ACAGCAGCA------.................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CA------ACAA---TTG------------------------CAG----------------CAA-----CAACAGCAA...........................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAAC---------------------AGCA---------------GCAACAATGGC.......................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................CAACAAC--------------------------------------------------------------------AACAGCA---GCAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGGCA------GCAACAACA-----------------ACA--------------------G..............................................	24	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................CAACAGC---------AACAGCAACAGCAAC.............................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------A..............	25	20	0.05	1	0	0	0	1	0
.........................................................................................................................................A---GCAACAACAACAGCAGCAGC----------------------------------------------------------------AACA...............................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................G------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGCA---------------GCA...............................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CAACAGCAAC---------------------AGCA---------------GCAACAATGG........................................................................................................	25	20	0.05	1	0	1	0	0	0
.............................................................................................................................................GCAACAACAACAGCAGCAGC----------------------------------------------------------------AACA...............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................TTG------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGCA---------------GC................................................................................................................	25	20	0.05	1	0	1	0	0	0
.................................................................................................................................................CAACAACAGCAGCAGC----------------------------------------------------------------AACAACAG...........................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AG----------------CAA-----CAACAGCAAC---------------------AGCA---------------GCA...............................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------A..............	24	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TTG------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGCA---------------G.................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................AACAAC--------------------------------------------------------------------AACAGCA---GCAACAACAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.............................................................................................................................................GCAACAACAACAGCAGCAGC----------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................AGCAACAAC--------------------------------------------------------------------AACAGCA---GCAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
....................................................................................................................................ACAGCA---GCAACAACAACAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----CAACAGCAAC---------------------AGCA---------------GCAACAATGGC.......................................................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TG------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGCA---------------GC................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................A---------TCA------------------------GCA------------ACAGC---AACA-GCAGC....................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................TGCAACAGC---------AACAGCAACAGC................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------AA---CA........	25	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AA---TTG------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGC..................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................A------ACAA---TTG------------------------CAG----------------CAA-----CAACAGCAA...........................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................ACAACAGCAGCAGC----------------------------------------------------------------AACAACA............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................AAC--------------------------------------------------------------------AACAGCA---GCAACAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................................................................................................................AACAACAACAGCAGCAGC----------------------------------------------------------------AA.................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................G------------------------CAG----------------CAA-----CAACAGCAAC---------------------AGCA---------------G.................................................................................................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................................................................GCA---GCAACAACAACAGCAGCAGC----------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------A..............	22	20	0.05	1	0	1	0	0	0
..............................................................................................................................................CAACAACAACAGCAGCAGC----------------------------------------------------------------AACA...............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCA---------ACAGCAGC........................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...................................................................................................................................AACAGCA---GCAACAACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------AA---CAACAAC...	28	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCA------GCAACAACA-----------------ACA--------------------GC------------------------------AA---C.........	21	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------GCAACAATGGCA------GCAACAACA-----------------......................................................................	25	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................A------ACAA---TTG------------------------CAG----------------CAA-----CAACAGC.............................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCA---------ACAGCAGCA------ACAA---TTG------------------------...............................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------AA---CAA.......	24	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGGCA------GCAACAACA-----------------ACA--------------------GC------------------------------...............	25	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................AACAGCAGCAGC----------------------------------------------------------------AACAACAGCA---------................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................AACAAC--------------------------------------------------------------------AACAGCA---GCAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...........................................................CAAC--------------------------------------------------------------------AACAGCA---GCAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCA------GCAACAACA-----------------ACA--------------------G..............................................	22	20	0.05	1	0	1	0	0	0

droVir3

ACAG--TTGCTC-CA------------------------CCAGCAG-------------C-----------------------------------------------------------------AGC---AACAGCA---GCTGCA---GCAG------CAAC-------AACAGCAG------------------------------------------CAACAACAGCA---------------------------------------ACA------------AAGAC---TCTA-CCAGCAACAGATGCAGCAGC---------AGCAACAGCTGCAACAGCA---------GCAGCAGCT------ACAG---------------------------------------------------------CAGCAGCAACAGCAACAGCTGCAGCAGCAACAGCA---------------------ACAGCT------GCAGCAGCAATCCTCGCTGCACTCCTCGCCCAG--------------------------------------------TCACAA----TACCACGAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
ACAG--TTGCTC-CA------------------------CCAGCAG-------------C-----------------------------------------------------------------AGC---AACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCCTCGCCCAG--------------------------------------------TCACA..............	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGCAGCAGCAACAGCA---------------------ACA.........................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCCAG--------------------------------------------TCACAA----TACCACG..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCACTCCTCGCCCA................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AACAGCA---------GCAGCAGCT------ACAG---------------------------------------------------------CAGC................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCGCTGCACTCCTCGCC..................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAG--TTGCTC-CA------------------------CCAGCAG-------------C-----------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................A------------AAGAC---TCTA-CCAGCAACAGATGCA..........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ACAACAGCA---------------------------------------ACA------------AAGAC---TCT...........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACTCCTCGCCCAG--------------------------------------------TCA................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCTGCACTCCTCGCCC.................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAG--TTGCTC-CA------------------------CCAGCAG-------------C-----------------------------------------------------------------AGC---A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................CAGCAACAGATGCAGCAGC---------A...........................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------CAGCAGCAACAGCAACAGCTGCA.............................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCA---------------------ACAGCT------GCA.............................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTGCAGCAGCAACAGCA---------------------............................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAGCAGCAACAGCA---------------------ACA.........................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAGCAGCAACAGCA---------------------A...........................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CAACAGATGCAGCAGC---------AGC.........................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCTGCAGCAGCAACA....................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------------ACAGCT------GCAGCAG.........................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCTGCAGCAG.........................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTGCAGCAGCAACA....................................................................................................................................	20	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCTGCA.............................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA---------------------ACAGCT------GCA.............................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CA------------------------CCAGCAG-------------C-----------------------------------------------------------------AGC---AACAGCA---GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCA---------GCAGCAGCT------ACAG---------------------------------------------------------CA..................................................................................................................................................................	19	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AC-------AACAGCAG------------------------------------------CAACAACAGC.............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GCAG------CAAC-------AACAGCAG------------------------------------------CAA....................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAGCT................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCAG-------------C-----------------------------------------------------------------AGC---AACAGCA---GCTGCA---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAGCAGCAACAGC..................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CAG---------------------------------------------------------CAGCAGCAACAGCAACA...................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GAAG--CAACAG-CAGAGA------------------GAACAGCA------------------------------------------------------------------------------GCAAC---------------TGCA---ACAG------CAGC-------AACAGCAG----------------CAACAACAGCAGCAACT-----------------------------------------------------------GCA------------------A-------------------CA------------------------------------------GCAGCAACA------ACA------------GCAGCAA------------CTG----------------C--AACAGCAGCAACAACATCAGCAACAGCAACAGC---AGC---------------AGCAACAAGGAGT------GCAGCA-----------------------------AGCAGCAACTCCAA----------TAATTTCA---GTTTCAGCTTCGAG--GAAAAACTCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................AACT-----------------------------------------------------------GCA------------------A-------------------CA------------------------------------------GCAGCAACA------ACA------------GCAGC.............................................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAACAGC---AGC---------------AGCAA..............................................................................................................	26	4	0.25	1	1	0	0	0	0	0
.............................................................................................................................................................................CAGCAG----------------CAACAACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	4	0
.............................................................................................................................AAC---------------TGCA---ACAG------CAGC-------AACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................CA------------------A-------------------CA------------------------------------------GCAGCAACA------ACA------------GC................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGC---AGC---------------AGCAAC.............................................................................................................	24	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................A------ACA------------GCAGCAA------------CTG----------------C--AACAGCA..................................................................................................................................................................	22	11	0.09	1	1	0	0	0	0	0
.......................................................................................................................................................................................................AACAGCAGCAACT-----------------------------------------------------------GCA------------------A-------------------CA------------------------------------------GCA.............................................................................................................................................................................................................................................	22	11	0.09	1	1	0	0	0	0	0
......................................AACAGCA------------------------------------------------------------------------------GCAAC---------------TGCA---ACAG------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAACAGC---A....................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................A-------------------CA------------------------------------------GCAGCAACA------ACA------------GCAGCA............................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................A------------------A-------------------CA------------------------------------------GCAGCAACA------ACA------------GCAG..............................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................CAG------CAGC-------AACAGCAG----------------CAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................................................ACAGCAG----------------CAACAACAGCAGCAAC.................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGC---AGC---------------AGC................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................G------CAGC-------AACAGCAG----------------CAACAACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTG----------------C--AACAGCAGCAACAACC.........................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGC---AGC---------------AGCA...............................................................................................................	19	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................CT-----------------------------------------------------------GCA------------------A-------------------CA------------------------------------------GCAGCAACA------ACC------------..................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................AGC-------AACAGCAG----------------CAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................A-------------------CA------------------------------------------GCAGCAACA------ACA------------GCAGCAA------------C..............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0

droGri2

CT----CATGCG-CATGCC------------------CTACAGCA----------G--------------------------------------------------------------------CAACAACAGCAGCA---GCAACAGCAACAGCAGCAGC-----------------------------ATCAT---------------CATGTGCTG--------------------------CA----------------------------------------------------------------------GCTAC---A---------------------ACA------CCAGCAGCAGCAACAACAACAACAACA---GCAGCAG------------CAG----------------CAG-----CAGCAGCAACAACAACACTTGCAGCACCAGCAACT---------------------TCACAT------GCA----------------------------------------------ACAAC---------------------------AT----ATGCACACG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................AGCA----------G--------------------------------------------------------------------CAACAACAGCAGCA---GCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA---GCAGCAG------------CAG----------------CAG-----C...................................................................................................................................................................	24	20	0.05	1	1	0

droAna3

CAAG--CCCTCGGTG---G------------------TGACCTGAT-------GAGCTTCCAGCACATGTGGCCTGCGGCTGGCTTCAGCCA----GTCTCCCCAG------------------CAAC--------------------------------------------------------AGCAG------CAGC------AG---------------------------------------------------------------------------------------------------------CAGCCGC------------AACAGC------AGCAACAGGCATCG---------------------------------------------------------------------------CAGCAACAACAACAGCAGCAGCAGCAGCAACCGCA---------------------ACAGGG------TCA------AGCAAA-TCCTA----GCGATCCTC-----------------------------------------------A----CAACTATAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCCTA----GCGATCCTC-----------------------------------------------A----CAACTAT...	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATCG---------------------------------------------------------------------------CAGCAACAACAACAGC....................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CCGC------------AACAGC------AGCAACAGGCATC................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GC------------AACAGC------AGCAACAGGCATC................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAACAGGCATCG---------------------------------------------------------------------------CAGCAA..............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.............................................................AGCACATGTGGCCTGCGGCTGGCTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACCGCA---------------------ACAGG.......................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ACAGC------AGCAACAGGCATC................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
...................................................................................................................................................................................................CAGC------AG---------------------------------------------------------------------------------------------------------CAGCCGC------------AACAGC------AGCA.........................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	1
.........................................................................................................................................................................................GCAG------CAGC------AG---------------------------------------------------------------------------------------------------------CAGCCGC------------AACAGC------AGT..........................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	1	0	0	0
.......................................................................................................CAG------------------CAAC--------------------------------------------------------AGCAG------CAGC------AG---------------------------------------------------------------------------------------------------------CAGCC.......................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAGCA..........................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAGCA.......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCAGCAGC..............................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAGCAAC.....................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

GAAG--ATACAA-CAGTAA------------------TA------G-------------A-----------------------------------------------------------------TAC---AA---CAACAGTAGAAGAC-----------------------------ACAA--------------------------------------CAGCAACAGATCCATCA------GCA---------------------------------------------ACAGATA-------------CAACAACAGT---AGAAGATACAAC------AGCAACA------GGCACAG---------------------------------------------------------------------CAATAGATACAA------CAGCAACAGGAATAGCA---------------------ACAGCT------AAAGCAACAAGTTTT-TATTTATTTTCAACCCCCCC---------------------------------------------AC----ATCAAC--T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACAG--CATTTA-CA------------------------GCAGCAG-------------C-----------------------------------------------------------------AAC---AACA------------GCATTTACAGC----------------------------------------------------------------------------------A---GCAG---CAGCATTTACAGCAGCAGCAACAACAGCATCTACAGCAGC---AGCA-ACAACAGCATTTACAGCAGC------------AGCAGC------AGCAGCA------------TTT------ACAG---------------------------------------------------------CAGCAGCAGCAACAGCATCTACAGCAGCAGCAGCA---------------------ACATCA------CCAGCAGCA-------------------------------------------AC---------------------------AACAACAGCATCTAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAACAGCAATCG-CA--AC------------------A-GGAGTCG-------------G-----------------------------------------------------------------GAC---AA------------CAGCAACAGCAGCAGCAAC-------AAAATCAG----------------C-----------------------AGCAGCAGCAGCAACAGGATCATCAGCA---------------------------------------------GCAGCA-------------------GCAAC---AACAACAACAAT------CGCAACA------------------------------------GCAACAGCAGCAGCAGCAGCAA------------------------------------------CAGCAGC------AGC---------------AAGAACAGAAACCACAGCCAAAGCAACAA------CAACTATGTGTAACGTT-------------------------------GCT---GTGTTAACTGCAA---CAACAGCTCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCGCCTCATCCA-CA--CC------------------GTCTGTCGT-------CCTCGTCGACGCCGCCG------------------------------GCCCTGCAGCATGCCCTGCAGCAGCAGC------------------------------AGCAGCACAT-----------GCTG-----------------------------------------------C---------A---GCAG---CAGCACCTGCAGCAGCAGCTGCA-------------------------------------------------------------------------ACA------CCAGCAGCA------ACA------------G-------------------------------------CAT-----CAGCAGCAACAG------CAGCAGCAGCAGCAGCAGCAGCTGCAGCACCACCAACTCG--------------------------------CTCACCCCCACCAG---------------------------------------------CC----GCCCACTCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAG--CTGCAG-TAG------------------------CA-------------------GCA-----------------------------------------------------------GCAGC---AG---CA------------ACGC------TAGC-------GTCGGCAG------------------------------------------CGACGGCAGCAGCATGT---------------------------------CCA------------------AAACAAG-------------CAGCGGTAAT---CCA-AGTGCAGC------AGCAACA------CAAGCAGCA---------------------GCAGCAGCAGCAGCGGCTGCAG------------------------------------------CAGCAGC------AGC---------------AAGTGCAACAAAT-----------------------------------------GCCGCCAATGCCGC----------CGATTTCAGTGCGTTCGACTTTAA---CGATAGTTCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGCTGCAACAG-CA----------------------------------------------ACAAC--------------------------CAG----------------GGA-----------AAT---AA---------------CAGCAGTCACATC--------------------GATAGCAG------CAAC------AG---CAACAGCAA-----------CAG------------CAGCAACACCA-------------------------------------------------------------------------------------------GCT------GCAACAACA------ACAACAACACGA---GCAGCATTAGCAACAACCAGGG----------------AAG-----TAACAGCGACAACAACACATGCTGCAACAGCAACA---------------------ACATTA----------------------GAA---------------------------------------------TCT---GTTCCAGCTGCAGCACTAGCAGCTGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACAA--TTTGTA-CAAGGT------------------GA------AGTACAAGAAGC-ACAAGAA-------------------------------GACCAACCAGAA----GC--------AGCAGC------------------------------AGCAGGCC---GC--------CCAG--------------------------------------------------------CA---GCAG---C------------------------------------------AGCA----------------GCAGCAACAGGCGGCGGCGCAGC------AGCAACA------CCAGCAGCA------GCAGCAACATCAGCAGCAGCAG------------CAA----------------CAT-----CAGCAGCACCAG------CAGCTGCACTCGCCGCT---------------------GC--------------------------------ACCATCACCACCAC---------------------------------------------CA----GGTGGGTCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCAG--CATCCA-CCCAGC------------------TTGCATCAG-------CAGCAGCAGCAAC--------------------------CGCC----GCCGCCTTCTCAGC-----------------------------AGCAGCAGCAGTTGCATCAGCTTAAATC--------ACCGCAGCAGCATCAG---------------CAACAGTTG---------------------------------------------------------------------------------------------CAGCAGC---------AGCA------------------------CCAGCAACA------ACAA---CAT---------------------------------------------------CACCAGCAGCAGCAACAGCAGCAACATCAGCAACA---------------------TCACCA------GCA----------------------------------------------GCAGCAACAGC---------------------AA----AACGAATCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCAG--CATCCA-CCCAGC------------------TTGCATCAG-------CAACAGCAGCAAC--------------------------CACC----GCCCCCCTCGCAGC-----------------------------AGCAGCAACAGCTGCATCAGCTCAAGTC--------CCCGCAACAGCACCAG---------------CAACAGCTG--------CAGCAGCAC---------------CAGCA-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCAACACCACCA---GCAGCAA------------CAT----------------CAC-----CAGCAGCAACAC------CAGCAGCAACAGCAGCA---------------------ACACCA------TCA----------------------------------------------GCAGCAACAGC---------------------CA----AACGAATCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................GCAAC--------------------------CACC----GCCCCCCTCGCAGC-----------------------------AGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TGCATCAG-------CAACAGCAGCAAC--------------------------CAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................C--------CCCGCAACAGCACCAG---------------CAC...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................A-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCAACACC.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................AGCA-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCAACA...........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................C---------------CAGCA-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCA..............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GCA-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCAACA...........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................A-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCAACA...........................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGCAGCAC---------------CAGCA-------------------------------------------------------------------------------------------GCA------GCAGC...........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................C---------------CAGCA-------------------------------------------------------------------------------------------GCA------GCAGCAGCA------GCAACA...........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................G--------CAGCAGCAC---------------CAGCA-------------------------------------------------------------------------------------------GCA------GCA.............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCAG--CATCCA-CCCAGC------------------TTGCATCAG-------CAACAGCAGCAAC--------------------------CCCC----GCCCCCCTCGCAGC-----------------------------AGCAGCAACAGCTGCATCAGCTCAAGTC--------CCCGCAGCAGCACCAG---------------CAACAGCTG---------------------------------------------------------------------------------------------CAGCAGC---------ACCAGCAGC------AGCAGCA------------------------C---CAT---------------------------------------------------CAGCAGCAACATCACCAGCAGCAACAGCAGCAGCA---------------------ACACCA------TCA----------------------------------------------GCAGCAACAGC---------------------CA----AACGAATCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---------------------ACACCA------TC..............................................................................................	19	8	1.00	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCA---------------------ACAC........................................................................................................	22	9	0.89	8	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCACCAGCAGCA.............................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAGCAGC---------ACCAGCAGC------AGC..........................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AGC---------ACCAGCAGC------AGCAGCA------------------------..............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GCAG--CAC-------------------------------TATCCG-------CAGCAACAAC--------------------------------------------------------------------ATCTGCA---GCAGCAGCAACAGCAGCAGCATCAC---GC--------CCAG--------------------------------------------------------------CAGCAACATCA---------------------------------GCAGCAGCA----------------GCAGC---------------AAC------AGCAGCA------G------CA---------------------GCAGCAG------------CACTGGGACTACTATGCCA---GGCAGCAGCAGCAACATCAACAGCAGCAGCAGCAACAGCA---------------------ACAGC--------CA----------------------GCGGCCGCC-----------------------------------------------A---CCGGCAACACC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................A---------------------GCAGCAG------------CACTGGGACT.....................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................................................................................................................................................GCAGCAGCATCAC---GC--------CCAG--------------------------------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...............................................................................................................................................................GCATCAC---GC--------CCAG--------------------------------------------------------------CAGCAA.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAGCAGCAGCAGCAACA....................................................................................................................................	23	8	0.13	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAACAGCAGCAGCAGCA.......................................................................................................................................	25	8	0.13	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCAACAGCAGCAGCAGC........................................................................................................................................	21	11	0.09	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAACAGCAGCAG............................................................................................................................................	20	13	0.08	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCAGCAGCAGCAAC.....................................................................................................................................	20	15	0.07	1	0	0	1	0
........................................................................................................................................................................................................................................................CAACATCA---------------------------------GCAGCAGCA----------------GCAGC---------------A.....................................................................................................................................................................................................................................................................	23	16	0.06	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCAGCAGCAGCAA......................................................................................................................................	19	18	0.06	1	0	0	1	0
............................................................................................................................................................................................................................................................ATCA---------------------------------GCAGCAGCA----------------GCAGC---------------AAC------.............................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	1	0
......................................................................................................................................................................................................................................................AGCAACATCA---------------------------------GCAGCAGC...........................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAGCAGCAGCAGC........................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

GCAG--CTGGCCGTCCAGCATTTGAGCATATCGCCCCA-GGCC-CT-------------G-----------------------------------------------------------------GGC---CA------------CTGCAACACCGGCAGCAACTC---GC--------CCAA---GAGCAGC--------------------------AGCAGCA---G------------------C------------------------------------------------CA-------------CAGCAGCAAC---AGCAGCAACAGC------AGCAGCA------GCAGCAGCC------ACAGTAGCAGCA---GCAGCAA---------------------------------------------CAG---------CATCAGCAGCTCCAGCG---------------------GCAGCG------GCAGCAGCGA---------------CCAGCCAACAC----------------------------------------------------ACAGCAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCG---------------------GCAGCG------GCAGCAGCGA---------------CCA....................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CA-------------CAGCAGCAAC---AGCAGCAACAGC------.............................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GC--------------------------AGCAGCA---G------------------C------------------------------------------------CA-------------CAGCAGCA....................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAC---AGCAGCAACAGC------AGCA.........................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAGCAACAGC------AGCAGCA------GC..............................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GCAGCAACAGC------AGCAGCA------GCAGCAGC........................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAC---AGCAGCAACAGC------AGCAGCA------GC..............................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGCAACAGC------AGCAGCA------GCA.............................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CAGCAGAAACAG-TA--TC----------------------AGGAG-------AAGCAAAAGCTAATGCT------------------------------G--------------------------------------------CAGCAACAGCAGCAG-------------------------------------------------------------CAACAGCAGCAG------------CAACAACAGCA------------------------------------------G-------------CTGCAGCAGC---AGCAACAACAGC------AGCTACAG---CAGCAGCAACA------ACAG---CAGCT---G-------------------------------------CAG-----CAGCAGCAACAA------CAGCAGCTGCAGCAGCA---------------------ACAACT------GCA----------------------------------------------GCAGC------------------------------------AAC--T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.AGCAGAAACAG-TA--TC----------------------AGGAG-------AAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................AGCAACAACAGC------AGCTACAG---CA................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................C---AGCAACAACAGC------AGCTACAG---CAGCA.............................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................AGCAGCAG------------CAACAACAGC.....................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	3	0
.....................................................................................................................................................................................................................................................CAACAACAGCA------------------------------------------G-------------CTGCAGCA....................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................CAACA------ACAG---CAGCT---G-------------------------------------CAG-----CA..................................................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA------CAGCAGCTGCAGCA....................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................AACAGCAGCAG------------CAACAACAGCA------------------------------------------..........................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAGCAGCTGCAGCAGCA---------------------............................................................................................................	19	13	0.08	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................AACAGCA------------------------------------------G-------------CTGCAGCAGC---A..............................................................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................A------ACAG---CAGCT---G-------------------------------------CAG-----CAGCA...............................................................................................................................................................	19	13	0.08	1	0	0	0	1	0	0	0
....................................................................................................G--------------------------------------------CAGCAACAGCAGCAG-------------------------------------------------------------CAACAGCAGCAG------------C..............................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GCAGCAGC---AGCAACAACAGC------AGC..........................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0
....................................................................................................................................................CAACAGCAGCAG-------------------------------------------------------------CAACAGC................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................................................................AG-------------------------------------------------------------CAACAGCAGCAG------------CAACA..........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................AACAGCAGCAG------------CAACAACAGCA------------------------------------------G-------------C...........................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------CAG-----CAGCAGCAACAA------CAGCAGC...........................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0

dps_1546

4_group3:4012703-4012807 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.5	-9.1	-9.1