ID:

dps_1534

 Coordinate:

4_group3:3491826-3492069 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.4 -3.3 -3.1

Flybase annnotation

exon [dpse_GLEANR_2413:9]; CDS [Dpse\GA25935-cds]; CDS [Dpse\GA25935-cds]; exon [dpse_GLEANR_2413:8]; intron [Dpse\GA25935-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGAACAGCATTGCCACAACGAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAGGCGGCGCCACCCACCCACACACCGTCTTCAATAGGCTAAAGCCCTCTGCGCCCCCAAGAAAACACACTTTACAAACACACAAAACCCAAAAAACAATTACCGTTTACAGTTTTGTTGATTAATTTATATTAATTTAATCCTTGTTCTGATTGATTCTCTGGTACTAACGCGTTCCAATTCTAATCGCAATCCCACATGTTCTGCTTCGTTCCACATTCCGCTGCGTTCCGTTCGTAGCAGCGCAAGTCGAGCACGCCCGTCAGACCCATTGTCACGACGCCGAAAAA
*******************************************************************************************************************************************.........(((((..((........)).)))))((((((.(((...))).))))))......********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
 V112
male body		 SRR902010
ovaries
..............................................................................................................................................................................................................................................................................................................................AGACCCATTGTCACGACGC....... 19 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................CGCAAGTCGAGCACGCCCGTCA......................... 22 0 1 1.00 1 1 0 0 0 0
.............CACAACGAATACGTCGCGCATGC.................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................ATATTAATTTAATCCTTGTT.............................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................AGACCCATTGTCACGACGCCGAAAA. 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................CTGATTGATTCTCTGGTACTAACGC..................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
...........GCCACAACGAATACGTCGCG......................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.........................GTCGCGCATGCGCATGAATGC.......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AGTCGAGCACGCCCGTCAGA....................... 20 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................ACTTTACAAACACACTAAACCCAAAA.................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................GCAAGTCGAGCACGCCCGTC.......................... 20 0 1 1.00 1 0 1 0 0 0
...ACAGCATTGCCACAACGAATACGTCGCGC........................................................................................................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................AACCCAAAAAACAATTACCGT........................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................CGTAGCAGCGCAAGTCGAGCACGCCCGTC.......................... 29 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................CACACAAAACCAAAAAAACAATTACCGT........................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................GACCCATTGTCACGACGCCG..... 20 0 1 1.00 1 1 0 0 0 0
....................AATACGTCGCGCATGCGCATGA.............................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0
..................................................................................................................................................................................................................................................................................TCGCTGAGTTCCGTTCGTA................................................... 19 2 3 0.33 1 0 0 1 0 0
.................................................................................................................................AAACACAGAAAACCCAAAAA................................................................................................................................................................................................... 20 1 4 0.25 1 0 0 1 0 0
..................................................................................................................................................................................ATTTATATTAGGTTAATCCT.................................................................................................................................................. 20 2 5 0.20 1 0 0 1 0 0
......................................................................................................................ACACACTGTACAAACACAGCA............................................................................................................................................................................................................. 21 3 7 0.14 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CAAGTAGAGCATGACCGTC.......................... 19 3 16 0.06 1 1 0 0 0 0
..................................................................................................................................................................ACATTTTTGTGGATTAATTT.................................................................................................................................................................. 20 2 16 0.06 1 0 0 0 0 1

Anti-sense strand reads

ACTTGTCGTAACGGTGTTGCTTATGCAGCGCGTACGCGTACTTACGAGTCCATATTCCGCCGCGGTGGGTGGGTGTGTGGCAGAAGTTATCCGATTTCGGGAGACGCGGGGGTTCTTTTGTGTGAAATGTTTGTGTGTTTTGGGTTTTTTGTTAATGGCAAATGTCAAAACAACTAATTAAATATAATTAAATTAGGAACAAGACTAACTAAGAGACCATGATTGCGCAAGGTTAAGATTAGCGTTAGGGTGTACAAGACGAAGCAAGGTGTAAGGCGACGCAAGGCAAGCATCGTCGCGTTCAGCTCGTGCGGGCAGTCTGGGTAACAGTGCTGCGGCTTTTT
**********************************************************************************************************************************************.........(((((..((........)).)))))((((((.(((...))).))))))......******************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
.......................................................................................................................GTGTGAAATGTTTGTGTGTTT............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0
.........................................................................CGTGTGGCGGAAGTTATCC............................................................................................................................................................................................................................................................ 19 2 1 1.00 1 1 0 0
...................................GCGTAGTTACGATTCCGTATT................................................................................................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0
...AGTCGTCACGGTGTTGCT................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 1 0 0
................................................................................................................................................................................................................................................................................................ACCATCGTCTCGTTCAGGTC.................................... 20 3 9 0.11 1 1 0 0
.............................................................................................................................................................................................................................AGTGCGCAGGATTAAGATT........................................................................................................ 19 3 9 0.11 1 0 1 0
...............................................................GGTGGGTGGGCGTGAGGCA...................................................................................................................................................................................................................................................................... 19 2 10 0.10 1 0 0 1
................................................................GTGGGTGGGTGGGTGGCA...................................................................................................................................................................................................................................................................... 18 1 11 0.09 1 1 0 0
.........................................................................................................................................................................................................AGACTAACTAATCGACCTTG........................................................................................................................... 20 3 17 0.06 1 1 0 0
............................................................CGCGGTGGGTGGGTCGGTG......................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0
.............................................................................................................................................................................................................................ATGGCGCAAGGTTGAGTT......................................................................................................... 18 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:3491776-3492119 + dps_1534 TGAACAGCATTGCCACAACGAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAGGCGGCGCC----------------ACCC-ACCC-ACACACCGTC------------------TTCAATAGGCTAAAGCCCTCTGCGCCCCCA---AGAA----------AACACA-----CTTTACAAAC------------A-CACAA--AA--CCCAAAA-------------------------------------------------------------------------------AACAATTACCGTTTACAGTT-------TTG----------------TTGATTA-------------------------------------------ATTTAT-------A---TTA-ATTTAA-------TCCTTG----TT-----C----------------TG--ATTGAT-TCTCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA--TCCCACATGTTC---TGCTTCGTTCCACATTCC-GCTGCGTTCCGTTCGTAGCAGCGCAAGTCGAGCACGCCCGTCAGACCCATTGTCACGACGCCGAAAAA
droPer2 scaffold_1:4971632-4971987 + TGAACAGCATTGCCACAACGAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAGGCGGCGCC----------------ACCC-ACCC-ACACACCCTC------------------TTCAATAGGCTAAAGCCCTCTGCGCCCCCAAGAAAAACACACAAAAAAACACA-----CTTTACAAA-------------A-CACAA--AA--CCCAAAA-------------------------------------------------------------------------------CACAATTACCGTTTACAGTT-------TTG----------------TTGATTA-------------------------------------------ATTTAT-------A---TTA-ATTTAA-------TCCTTG----TT-----C----------------TG--ATTGAT-TCTCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA--TCCCACATGTTC---TGCTTCGTTCCACATTCC-GCTGCGTTCCGTTCGTAGCAGCGCAAGTCGAGCACGCCCGTCAGACCCATTGTCACGACGCCGAAAAA
droWil2 scf2_1100000004585:8018674-8019024 - dwi_1741 TGAATAGCATTGCCACCACAAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAAGCGATGAT----------------ACCC-TCAA-ACCCAACTCCATTCCAGC--AATATTCCTTCAAT--------------------CAA-TGAACGA----------C--------------------ACCTAAAAAAACAA-AA-----ACA--GAAAAAAAGAACACCTTAAACAGCTTAAAAGAGCTATTCGTTTTG-----CC---------------------AT-------------TTTTTTGTTTGCAGTT-----------------------TTCTTTGTTT-------------------------------------------ATT----------A---T--ATTTAA------------TGAT---------TTAT-------TAATTTTT-AACATAT--TCCT-----------TATACTAACG-CGTT-----G---AATTCT------------AATCCT------TC---------C---------TTCC------C-CCCACACTTAATTCAAAGCAGCGCAAGTCTACCACGCCCATTAAGCCAATTGTAACGACGCCGAAAAG
droVir3 scaffold_13246:584619-584914 - dvi_21429 TGAACAGCATAGCCACAACAAACACATCGCGTATACGCATGAATGCACAGGTATAAG-CCGCGACT--GC--AACATGC-CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA-CGTTATCAGTT-------A-----------TCAGTTACCTGTTACCTGTTATTCTTTTACCAGTTACCTGTCACAGTTTTGCTGTTA-TCTATGCCTAATACTGTTAATTTTAACC------------------------GT-------TAACTGT--GCTCGAGTTTTTT-----------TTTACTAACG-CGTT----TAC--AATTCT----------TTAATTTT-AA--TCC---------C--------------------------CA-----CCCACGCAGCGCAAATCGAGCACGCCCATTCGGCCAATTGTAACGACGCCAAAAAG
droMoj3 scaffold_6500:550073-550387 - TGAACAGCATAGCCACGACGAACACGTCGCGCATACGCATGAATGCACAGGTATAAGACGG---CC--TT--GCAA---------------------------------------CTGC--------------------------AACAGCAACAACATGCCACGAGCCACATGTCACAC--ACAGTT---------------------------------------------------------------------------------------------TTAGTTTACCTTTTTACCACAGTTACCTGCCAGAGTT-------ATG----------CTGTTATCTATAT-------------------------------------------ATTTATGCCTAATAC-GTTAATGT-------TAA-----------------CTGTAAACTGTTAACTGT--T--TACG---TTT-----------TTTACTAACG-CGTT-----TTAAAACTCT------------AATTCTTAA--TCC---------C---------------------------CTCCA---CATGCAGCGCAAGTCGAGCACGCCCATTCGGTCTAATGTAACGACGCCGAAAAA
droGri2 scaffold_15252:16655362-16655729 + TGAACAGCATAGCCACAACAAACACATCGCGTATACGCATGAATGCACAGGTATAAGACCG-------------------------------------------------------------------------------------ACAGACAGGC----------CA---------GCA--AACCAACTTGCAACATGCCACA--TGCAAA--TGCAA-------------------------------CACATTT-G-----ACAC-------------TTAGTTA-----------------GCCGTTGCCAGTT-TATCAG--TTTAATTAATACTGTTTATTGTTA-------------------------------------------AACGTT-------A---A--ACGTTAATTGTTAA-----------------CTGTTAACTGTTAGCTGT--GCTCCCGTTTTTA-------TATATATACTAACG-CGTCTTCTTCT--AATTCTAATTCTACTTCTAATTCT-AA--TCC---------TCAACCTCCCCCCTACAACCCCCCAACCACCTACCCCCTGCAGCGCAAATCTAGCACGCCACTTCGGTCAATTGTCGCGACGCCAAAAAG
droAna3 scaffold_12916:3472728-3473007 - TGAACAGCATCGCTACCACGAATACGTCGCGTATGCGCATGAATGCCCAGGTATAAG-CGGTGTCC--TTCAGAAAGGA-CACCT-TCTCCCA-------------------CCTCC------------------------------------------------------------------AC------------------------------------------------------------------------TTCCCCAA----CA-------------GCTAGGC-----TACA------CTAGTTTATGTT-------CTT-------ATTCTGT----TGTTA-------------------------------------------CCTTTT--------------AATTGACCCATTAACCCCTGAT---------TTGT-------TGATTTT--ATTTGAG--CCCC-----------GGTACTAACT-AGTT-----AC--AATTCT------------AATCGC-AA--TC---------------------------------------------CCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTCTAACGACGCCGAAATC
droBip1 scf7180000396737:1298531-1298815 + TGAACAGTATCGCTACCACGAACACGTCGCGCATGCGCATGAATGCCCAGGTATAAG-CGGTGTCC--TT--GAGAAGAGCCTTGCTT------------------------GCT---------------------------------------------------------------------C------------------------------------------------------------------------TTCCCCAAACCCCA-------------GTTAG-------------GCTACACTTTACAGTT-TATGTT--T-------------ATTTTTGTTA-------------------------------------------CTTTC--------A---A--CTTTGACCCATTAA---CCCATTGACGCCCCTTGT-------TGATTTTG-ATTCGAG--CCTC-----------GGTACTAACTAAGTT-----AC--AATTCT------------AATCGC-AA--TC---------------------------------------------CCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATACTAGCGACGCCGAAATC
droKik1 scf7180000302472:703106-703430 + TGAACAGCATTGCCACCACAAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACCCCTT-------GGGCACCCTTGA-GGC---------------C-CAGCTCT------------------------------------------------------------------CAGTCCCCTACAG--C---------TA-------C-----------------------------------------------------CCCCCAACAC----------------ACACAAATACCGTTTGCAGTT---------G-------GTTTTGTTATTTGTTA-------------------------------------------AATTTT-------A---T-TATCTGACCCATTAA---CTTAT---------TTGC-------TAATTTATATTTTGAT--ACCTCCCGCCCCCTGGATACTAACG-TGTT-----AC--AATTCT------------AATCGC-AA--TCCCACACCTT-C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACGCCAGTTAAGCCCATAATAACGACGCCGAAAAG
droFic1 scf7180000453855:165643-165968 + TGAACAGCATCGCCACCACGGCCACGTCGCGTATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GCGAAGAGCACCCCTCACCAC---------------C-CAGTTCTCC--------------------------CACAG----AA----------CA---------CCC--ACAGTCCCTAAAACAAGAA-AAAG--AA--AAAAAAA-------------------------------------------------------------------------------CACAATTACTATTCAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT--------------ATTTTACTTATTAA---CCTAC---------TTGT-------TAGTTTA--CTTTGAG--CCCC-----------GATACTAACG-CGTT----ACC--AATTCT------------AATCGC-AA--TCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCCATCACGCCCGTAAAGCCAATTTTAGCGACGCCGAAAAG
droEle1 scf7180000491046:87364-87682 + TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTTACC--TC--GCGAAGAGCACCCTTTACTAC---------------C-CAGTTCTAC--------------------------CACTG----AA----------TA---------CCCACACAGTCCCTAAAAA------------------GAAAA-------------------------------------------------------------------------------CACAAATACCGTTTGCAGTTCTGTTA-CTG-------TTTCTGTTCATTGTTA-------------------------------------------ATTTT---------------ATTTGACCCCTTAA---CCCAC---------TTAG-------TAATTTA--TTTTGAG--CCCT-----------GGTACTAACG-CGAT-----CC--AATTCT------------AATCGC-AA--TCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACACCAGTAAAGCCTATTTTAGCGACGCCGAAAAG
droRho1 scf7180000771542:7058-7359 + TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTTACC--TC--GACAGGAGCACCCCTCACCAC---------------CACAGTTCTTT--------------------------CACTG----AA----------CA---------CCC--ACAGTCCCTGAAAC-----------------------------------------------------------------------------------------------------------ATACCGTTTGCAGTT-------CTG-------TTTCTGTTCTTTGTTA-------------------------------------------ATTTT---------------ATTTTACCCTTTAA---CCTAC---------TTAT-------TAATTTA--TTTTGAG--CACT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA--TCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACGCCAGTAAAGCCAATTATAACGTCGCCGAAAAG
droBia1 scf7180000302422:6321600-6321918 - TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GCGATGAGCACCCCTCACCAT---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CTCTAAAAGTCCCCAAAAC-------------------AAAA-------------------------------------------------------------------------------CGCAAACACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------CTTTA------------A--TTTTTACCCATTAA---CCTAT---------TTGA-------TAATTTA--TTTCGAG--CCCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AAAATCC---------C--------------------------CTTCCGTTCCTAGCAGCGCAAGTCAATCACGCCCGTTAAGCCAGTTTTAGCGACGCCGAAAAG
droTak1 scf7180000415079:190846-191165 - TGAATAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAGAAGAGCACTCCTCACCAT---------------C-CAGTTCTCC--------------------------CACAGGAAGAA----------CA---------CCC--ACAGTCCCTAAAAA------------------CAAAA-------------------------------------------------------------------------------CACAAATACCGTTTACAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---A--TTTTTACCCATTAA---TCTAA---------TTGC-------TAATTTA--TTTTGAA--CCCT-----------GGTACTAACG-CGTT-----CT--AATTCT------------AATCGC-AAAATCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACGCCCGTAAAGCCAATTTTAGCGACGCCGAAAAG
droEug1 scf7180000409016:23405-23732 + TGAACAGCATCGCCACCACGGCCACATCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GTAAAGGGCATCCCTCACCAA---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ACAGTCCCTAAAAG--A---------AAA---AGAAA-------------------------------------------------------------------------------CACAAATACCGTTTACCGTT-------CTG-------GTTATGTTCTTTGTTA-------------------------------------------ATTTTT-------T---T-AATTCTACACATTAA---CCTGA---------TTGT-------TAATTTAT-TTTTGAGCCCCCT-----------GCTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AAAATCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCCATCACGCCCGTAAAGCCAATTTTAGCGACGCCGAAAAG
dm3 chr2L:17401241-17401565 + TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGATCACCC-TCACCAC---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ACAGTACCTTAAAAAAA---------AAAA--GCAAA-------------------------------------------------------------------------------CACAAATACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---T--ATTTTACCCATTAA---CCTAC---------CTGT-------TACTTTTT-ATTTGAG--CCCT-----------TTTACTAACG-CGTT-----CC--ACATCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAG
droSim2 2l:16946341-16946641 + dsi_7078 TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGAACACCC-CCACCAC---------------C-CAGTTCA------------------------------------------------------------CCC--ACAGTACCTTAA----------------------AAA-------------------------------------------------------------------------------CACAAATACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---T--ATTTTACACATTAACAACCTAC---------TTGT-------TAAATTT--TTTTGAG--CCCT-----------TATACTAACG-CGTT-----CC--ACATCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAG
droSec2 scaffold_7:1042920-1043220 + TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGATCACAC-CCACCAC---------------C-CAGTTCGCA------------------------------------------------------------C--ACAGTACCTTAA----------------------AAA-------------------------------------------------------------------------------CACAAGTACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---T--AATTTACCCATTAACAACCTAC---------TTGT-------TAAATTT--TTTTGAG--CCCT-----------TATACTAACG-CGTT-----CC--ACATCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAG
droYak3 2R:3701264-3701584 - TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGATCACCC-TCACCGC---------------C-CACTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ATAGTACCTTAAAAAAAA---------------CACA-------------------------------------------------------------------------------CACAAATACCGTTAAAAGTT-------CTG-------GTTCTGTTCTTTGTTT-------------------------------------------ATTTAT-------A---T--ATTTTACCCATTAA---CCTAC---------TTGT-------TAATTTA--TTTCAAG--CCCT-----------GCTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AAAATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAG
droEre2 scaffold_4845:6849418-6849739 - TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAGGGATCA--CCTCACCAC---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ACAGTACCTACAAAAAAAAAAA--AAAAAA--GAAAA-------------------------------------------------------------------------------AACACACACCG-------TT-------CTG-------GTTCTGTACTTTGTTA-------------------------------------------ATTTTT-------A---T--ATTTTACCCACTAA---CCTAC---------TTGT-------TAATTT---TTTTGAG--CCCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGAACAGCATTGCCACAACGAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAGGCGGCGCC----------------ACCC-ACCC-ACACACCGTC------------------TTCAATAGGCTAAAGCCCTCTGCGCCCCCA---AGAA----------AACACA-----CTTTACAAAC------------A-CACAA--AA--CCCAAAA-------------------------------------------------------------------------------AACAATTACCGTTTACAGTT-------TTG----------------TTGATTA-------------------------------------------ATTTAT-------A---TTA-ATTTAA-------TCCTTG----TT-----C----------------TG--ATTGAT-TCTCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA--TCCCACATGTTC---TGCTTCGTTCCACATTCC-GCTGCGTTCCGTTCGTAGCAGCGCAAGTCGAGCACGCCCGTCAGACCCATTGTCACGACGCCGAAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCATTGTCACGACGC.......1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGTCGAGCACGCCCGTCA.........................2211.0010100000000
.............CACAACGAATACGTCGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AT-------A---TTA-ATTTAA-------TCCTTG----TT-----.......................................................................................................................................................................................................2011.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCATTGTCACGACGCCGAAAA.2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------TG--ATTGAT-TCTCT-----------GGTACTAACG-C...............................................................................................................................................2511.0010010000000
...........GCCACAACGAATACGTCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................GTCGCGCATGCGCATGAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAGCACGCCCGTCAGA.......................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTCGAGCACGCCCGTC..........................2011.0010010000000
...ACAGCATTGCCACAACGAATACGTCGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
................................................................................................................................................................................................................AA--CCCAAAA-------------------------------------------------------------------------------AACAATTACCGT..............................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGCAGCGCAAGTCGAGCACGCCCGTC..........................2911.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCATTGTCACGACGCCG.....2011.0010100000000
....................AATACGTCGCGCATGCGCATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
droPer2
TGAACAGCATTGCCACAACGAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAGGCGGCGCC----------------ACCC-ACCC-ACACACCCTC------------------TTCAATAGGCTAAAGCCCTCTGCGCCCCCAAGAAAAACACACAAAAAAACACA-----CTTTACAAA-------------A-CACAA--AA--CCCAAAA-------------------------------------------------------------------------------CACAATTACCGTTTACAGTT-------TTG----------------TTGATTA-------------------------------------------ATTTAT-------A---TTA-ATTTAA-------TCCTTG----TT-----C----------------TG--ATTGAT-TCTCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA--TCCCACATGTTC---TGCTTCGTTCCACATTCC-GCTGCGTTCCGTTCGTAGCAGCGCAAGTCGAGCACGCCCGTCAGACCCATTGTCACGACGCCGAAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACGCCCGTCAGACCC....................2013.003300000
...........GCCACAACGAATACGTCGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
TGAACAGCATTGCCACAACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...................GAATACGTCGCGCATGCGCATGAATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACGCCCGTCAGACC.....................1811.001000010
...................GAATACGTCGCGCATGCGCATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACGCCCGTCAGAC......................1811.001100000
...................................................................................................TC------------------TTCAATAGGCTAAAGCCCTCTGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................AACGAATACGTCGCGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAGCACGCCCGTCAGAC......................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCGAGCACGCCCGTCAGACC.....................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCAAGTCGAGCACGCCCGTCA.........................2711.001010000
.............CACAACGAATACGTCGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droWil2
TGAATAGCATTGCCACCACAAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAAGCGATGAT----------------ACCC-TCAA-ACCCAACTCCATTCCAGC--AATATTCCTTCAAT--------------------CAA-TGAACGA----------C--------------------ACCTAAAAAAACAA-AA-----ACA--GAAAAAAAGAACACCTTAAACAGCTTAAAAGAGCTATTCGTTTTG-----CC---------------------AT-------------TTTTTTGTTTGCAGTT-----------------------TTCTTTGTTT-------------------------------------------ATT----------A---T--ATTTAA------------TGAT---------TTAT-------TAATTTTT-AACATAT--TCCT-----------TATACTAACG-CGTT-----G---AATTCT------------AATCCT------TC---------C---------TTCC------C-CCCACACTTAATTCAAAGCAGCGCAAGTCTACCACGCCCATTAAGCCAATTGTAACGACGCCGAAAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................AA-ACCCAACTCCATTCCAGC--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..........TGCCACCACAAATACGTCGCGCATGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
..............................................................................................................................................................................................................................................................TTTTG-----CC---------------------AT-------------TTTTTTGTTTGCAGT.......................................................................................................................................................................................................................................................................................................................................2411.00100010
.................................................................................................................................................................................................................................CACCTTAAACAGCTTAAAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.........................................AATGCTCAGGTATAAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............CACCACAAATACGTCGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
....................................GCATGAATGCTCAGGTATAAAGCGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
..................................................................................................................................................................................................................CA--GAAAAAAAGAACACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...............CCACAAATACGTCGCGCATGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAATTCAAAGCAGCGCAAGTCTAC....................................2611.00100010
................................................................................................................................................................................................................................ACACCTTAAACAGCTTAAAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................................ATGAATGCTCAGGTATAAAGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..................................GCGCATGAATGCTCAGGTATAAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..............ACCACAAATACGTCGCGCATGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
................................................................................................................................................................................................AAAAAACAA-AA-----ACA--GAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................20130.08100010
droVir3
TGAACAGCATAGCCACAACAAACACATCGCGTATACGCATGAATGCACAGGTATAAG-CCGCGACT--GC--AACATGC-CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA-CGTTATCAGTT-------A-----------TCAGTTACCTGTTACCTGTTATTCTTTTACCAGTTACCTGTCACAGTTTTGCTGTTA-TCTATGCCTAATACTGTTAATTTTAACC------------------------GT-------TAACTGT--GCTCGAGTTTTTT-----------TTTACTAACG-CGTT----TAC--AATTCT----------TTAATTTT-AA--TCC---------C--------------------------CA-----CCCACGCAGCGCAAATCGAGCACGCCCATTCGGCCAATTGTAACGACGCCAAAAAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............CAACAAACACATCGCGTATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CTGTCACAGTTTTGCTGTT...........................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAACC------------------------GT-------TAACTGT--GCTC...............................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
....................AACACATCGCGTATACGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCGAGCACGCCCATTCGGCCAA...................2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACGCCCATTCGGCCAATT.................2311.001000000000000000100000000000000000000000000000000000000000000000
....................AACACATCGCGTATACGCATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACGCCCATTCGGCCAAT..................2111.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGCACGCCCATTCGGCCA....................2211.001000000000000000000000100000000000000000000000000000000000000000
........ATAGCCACAACAAACACATCGCGTATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...........................CGCGTATACGCATGAATGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCGAGCACGCCCATTC.........................2111.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTA-TCTATGCCTAATACTGTT.......................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................GTATACGCATGAATGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCAATTGTAACGACGCCAAAAA.2611.001000000000000000000000000000000010000000000000000000000000000000
....CAGCATAGCCACAACAAACACATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTAACC------------------------GT-------TAACTGT--GCTCGAGT...........................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................TACCTGTTACCTGTTATTCT..........................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A-----------TCAGTTACCTGTTACCTGTT...............................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAATCGAGCACGCCC.............................1911.001000000000000000000000000000000000010000000000000000000000000000
........ATAGCCACAACAAACACATCGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTTACCAGTTACCTGTCACAGT....................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...........GCCACAACAAACACATCGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...................AAACACATCGCGTATACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
TGAACAGCATAGCCACGACGAACACGTCGCGCATACGCATGAATGCACAGGTATAAGACGG---CC--TT--GCAA---------------------------------------CTGC--------------------------AACAGCAACAACATGCCACGAGCCACATGTCACAC--ACAGTT---------------------------------------------------------------------------------------------TTAGTTTACCTTTTTACCACAGTTACCTGCCAGAGTT-------ATG----------CTGTTATCTATAT-------------------------------------------ATTTATGCCTAATAC-GTTAATGT-------TAA-----------------CTGTAAACTGTTAACTGT--T--TACG---TTT-----------TTTACTAACG-CGTT-----TTAAAACTCT------------AATTCTTAA--TCC---------C---------------------------CTCCA---CATGCAGCGCAAGTCGAGCACGCCCATTCGGTCTAATGTAACGACGCCGAAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........ATAGCCACGACGAACACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCACGCCCATTCGGTCTAATG................2511.001000100
...................GAACACGTCGCGCATACGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAATGTAACGACGCCGAA...2111.001100000
droGri2
TGAACAGCATAGCCACAACAAACACATCGCGTATACGCATGAATGCACAGGTATAAGACCG-------------------------------------------------------------------------------------ACAGACAGGC----------CA---------GCA--AACCAACTTGCAACATGCCACA--TGCAAA--TGCAA-------------------------------CACATTT-G-----ACAC-------------TTAGTTA-----------------GCCGTTGCCAGTT-TATCAG--TTTAATTAATACTGTTTATTGTTA-------------------------------------------AACGTT-------A---A--ACGTTAATTGTTAA-----------------CTGTTAACTGTTAGCTGT--GCTCCCGTTTTTA-------TATATATACTAACG-CGTCTTCTTCT--AATTCTAATTCTACTTCTAATTCT-AA--TCC---------TCAACCTCCCCCCTACAACCCCCCAACCACCTACCCCCTGCAGCGCAAATCTAGCACGCCACTTCGGTCAATTGTCGCGACGCCAAAAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACCCCCTGCAGCGC............................................1811.00110
......GCATAGCCACAACAAACACATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
droAna3
TGAACAGCATCGCTACCACGAATACGTCGCGTATGCGCATGAATGCCCAGGTATAAG-CGGTGTCC--TTCAGAAAGGA-CACCT-TCTCCCA-------------------CCTCC------------------------------------------------------------------AC------------------------------------------------------------------------TTCCCCAA----CA-------------GCTAGGC-----TACA------CTAGTTTATGTT-------CTT-------ATTCTGT----TGTTA-------------------------------------------CCTTTT--------------AATTGACCCATTAACCCCTGAT---------TTGT-------TGATTTT--ATTTGAG--CCCC-----------GGTACTAACT-AGTT-----AC--AATTCT------------AATCGC-AA--TC---------------------------------------------CCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTCTAACGACGCCGAAATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............TACCACGAATACGTCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000002
.....................................................................................................................................................................................................................................................................................................................................CTT-------ATTCTGT----TGTTA-------------------------------------------CCTTTT--------------AATT..................................................................................................................................................................................................................................2511.001010000
..........CGCTACCACGAATACGTCGCGTATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............................CGTATGCGCATGAATGCCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................GAATGCCCAGGTATAAG-CGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....AGCATCGCTACCACGAATACGTCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTT--ATTTGAG--CCCC-----------GGTACT.....................................................................................................................................................2311.001000010
.....................................CATGAATGCCCAGGTATAAG-CGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.......................ACGTCGCGTATGCGCATGAATGCCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................CC--TTCAGAAAGGA-CACCT-TCTCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droBip1
TGAACAGTATCGCTACCACGAACACGTCGCGCATGCGCATGAATGCCCAGGTATAAG-CGGTGTCC--TT--GAGAAGAGCCTTGCTT------------------------GCT---------------------------------------------------------------------C------------------------------------------------------------------------TTCCCCAAACCCCA-------------GTTAG-------------GCTACACTTTACAGTT-TATGTT--T-------------ATTTTTGTTA-------------------------------------------CTTTC--------A---A--CTTTGACCCATTAA---CCCATTGACGCCCCTTGT-------TGATTTTG-ATTCGAG--CCTC-----------GGTACTAACTAAGTT-----AC--AATTCT------------AATCGC-AA--TC---------------------------------------------CCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATACTAGCGACGCCGAAATCSizeHit CountTotal NormTotal
No Reads
droKik1
TGAACAGCATTGCCACCACAAATACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACCCCTT-------GGGCACCCTTGA-GGC---------------C-CAGCTCT------------------------------------------------------------------CAGTCCCCTACAG--C---------TA-------C-----------------------------------------------------CCCCCAACAC----------------ACACAAATACCGTTTGCAGTT---------G-------GTTTTGTTATTTGTTA-------------------------------------------AATTTT-------A---T-TATCTGACCCATTAA---CTTAT---------TTGC-------TAATTTATATTTTGAT--ACCTCCCGCCCCCTGGATACTAACG-TGTT-----AC--AATTCT------------AATCGC-AA--TCCCACACCTT-C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACGCCAGTTAAGCCCATAATAACGACGCCGAAAAGSizeHit CountTotal NormTotal
No Reads
droFic1
TGAACAGCATCGCCACCACGGCCACGTCGCGTATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GCGAAGAGCACCCCTCACCAC---------------C-CAGTTCTCC--------------------------CACAG----AA----------CA---------CCC--ACAGTCCCTAAAACAAGAA-AAAG--AA--AAAAAAA-------------------------------------------------------------------------------CACAATTACTATTCAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT--------------ATTTTACTTATTAA---CCTAC---------TTGT-------TAGTTTA--CTTTGAG--CCCC-----------GATACTAACG-CGTT----ACC--AATTCT------------AATCGC-AA--TCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCCATCACGCCCGTAAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotal
No Reads
droEle1
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTTACC--TC--GCGAAGAGCACCCTTTACTAC---------------C-CAGTTCTAC--------------------------CACTG----AA----------TA---------CCCACACAGTCCCTAAAAA------------------GAAAA-------------------------------------------------------------------------------CACAAATACCGTTTGCAGTTCTGTTA-CTG-------TTTCTGTTCATTGTTA-------------------------------------------ATTTT---------------ATTTGACCCCTTAA---CCCAC---------TTAG-------TAATTTA--TTTTGAG--CCCT-----------GGTACTAACG-CGAT-----CC--AATTCT------------AATCGC-AA--TCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACACCAGTAAAGCCTATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotal
No Reads
droRho1
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTTACC--TC--GACAGGAGCACCCCTCACCAC---------------CACAGTTCTTT--------------------------CACTG----AA----------CA---------CCC--ACAGTCCCTGAAAC-----------------------------------------------------------------------------------------------------------ATACCGTTTGCAGTT-------CTG-------TTTCTGTTCTTTGTTA-------------------------------------------ATTTT---------------ATTTTACCCTTTAA---CCTAC---------TTAT-------TAATTTA--TTTTGAG--CACT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA--TCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACGCCAGTAAAGCCAATTATAACGTCGCCGAAAAGSizeHit CountTotal NormTotal
No Reads
droBia1
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GCGATGAGCACCCCTCACCAT---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CTCTAAAAGTCCCCAAAAC-------------------AAAA-------------------------------------------------------------------------------CGCAAACACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------CTTTA------------A--TTTTTACCCATTAA---CCTAT---------TTGA-------TAATTTA--TTTCGAG--CCCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AAAATCC---------C--------------------------CTTCCGTTCCTAGCAGCGCAAGTCAATCACGCCCGTTAAGCCAGTTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotal
No Reads
droTak1
TGAATAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAGAAGAGCACTCCTCACCAT---------------C-CAGTTCTCC--------------------------CACAGGAAGAA----------CA---------CCC--ACAGTCCCTAAAAA------------------CAAAA-------------------------------------------------------------------------------CACAAATACCGTTTACAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---A--TTTTTACCCATTAA---TCTAA---------TTGC-------TAATTTA--TTTTGAA--CCCT-----------GGTACTAACG-CGTT-----CT--AATTCT------------AATCGC-AAAATCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCGATCACGCCCGTAAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotal
No Reads
droEug1
TGAACAGCATCGCCACCACGGCCACATCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GTAAAGGGCATCCCTCACCAA---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ACAGTCCCTAAAAG--A---------AAA---AGAAA-------------------------------------------------------------------------------CACAAATACCGTTTACCGTT-------CTG-------GTTATGTTCTTTGTTA-------------------------------------------ATTTTT-------T---T-AATTCTACACATTAA---CCTGA---------TTGT-------TAATTTAT-TTTTGAGCCCCCT-----------GCTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AAAATCC---------C--------------------------GTTCCGTTCCTAGCAGCGCAAGTCCATCACGCCCGTAAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotal
No Reads
dm3
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGATCACCC-TCACCAC---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ACAGTACCTTAAAAAAA---------AAAA--GCAAA-------------------------------------------------------------------------------CACAAATACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---T--ATTTTACCCATTAA---CCTAC---------CTGT-------TACTTTTT-ATTTGAG--CCCT-----------TTTACTAACG-CGTT-----CC--ACATCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................CCAC---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AAAAAAA---------AAAA--GCAAA-------------------------------------------------------------------------------CACAA.....................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCACGTCGCGCATGCGCATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCGAGCACGCCCGTTAAGCCAA...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CACGTCGCGCATGCGCATGAATGCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATACCGTTTAAAGTT-------CTG-------GTTCTGTT.............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGTCGCGCATGCGCATGAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CACGTCGCGCATGCGCATGAATGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGCATGCGCATGAATGCTCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGCCACCACGGCCACGTCGCGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTTTAGCGACGCCGAAA..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACCACGGCCACGTCGCGCATGCGCAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGCCACGTCGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.............................CGCATGCGCATGAATGCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAATTTTAGCGACGCCG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGCCACGTCGCGCATGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CTCC--------------------------CACAGAAAGAA----------CA---------CCC--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ACGGCCACGTCGCGCATGCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CGTTTAAAGTT-------CTG-------GTTCTG...............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------C---------------------------TTCCGTTCCTAGCAGCG.............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AATACCGTTTAAAGTT-------CTA-------.....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
..........CGCCACCACGGCCACGTCGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGCATGCGCATGAATGCTCAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ACCGTTTAAAGTT-------CTG-------GTTCT................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACAGCATCGCCACCACGGCCACGTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGAATGCTCAGGTATAAG-CGGTGACC--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................CGCATGAATGCTCAGGTAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAATACCGTTTAAAGTT-------CTG-------.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGTCGAGCACGCCCGTTAAGC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--CCCT-----------TTTACTAACG-CGTT-----CC--A..................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAG--CCCT-----------TTTACTAACG-................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....AGCATCGCCACCACGGCCACGTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AATACCGTTTAAAGTT-------CGA-------.....................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droSim2
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGAACACCC-CCACCAC---------------C-CAGTTCA------------------------------------------------------------CCC--ACAGTACCTTAA----------------------AAA-------------------------------------------------------------------------------CACAAATACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---T--ATTTTACACATTAACAACCTAC---------TTGT-------TAAATTT--TTTTGAG--CCCT-----------TATACTAACG-CGTT-----CC--ACATCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...ACAGCATCGCCACCACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.................ACGGCCACGTCGCGCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCGCAAGTCGAGC...................................1811.00101000000000000000
.....................................................TAAG-CGGTGACC--TC--GAAAGGAACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAAGTCGAGCACGCC..............................1911.00100000100000000000
..............................................................................................................................................................................................................................................................................................................AATACCGTTTAAAGTT-------CTG-------GTTC.................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................TTTAAAGTT-------CTG-------GTT..................................................................................................................................................................................................................................................................................................................1590.11100000000001000000
droSec2
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGATCACAC-CCACCAC---------------C-CAGTTCGCA------------------------------------------------------------C--ACAGTACCTTAA----------------------AAA-------------------------------------------------------------------------------CACAAGTACCGTTTAAAGTT-------CTG-------GTTCTGTTCTTTGTTA-------------------------------------------ATTTTT-------A---T--AATTTACCCATTAACAACCTAC---------TTGT-------TAAATTT--TTTTGAG--CCCT-----------TATACTAACG-CGTT-----CC--ACATCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........ATCGCCACCACGGCCACGTCGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCGAGCACGCCCGTTAAGCC.....................2411.0010010
....................................................ATAAG-CGGTGACC--TC--GAAAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG-CGTT-----CC--ACATCT------------AATCGC-A.........................................................................................................2211.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGTCGAGCACGCCCGTTAAGCCA....................2711.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAGTCGAGCACGCCCGT...........................2111.0010010
.............CACCACGGCCACGTCGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGCAGCGCAAGTCGA.....................................2111.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAGTCGAGCACGCCCGTTAAGCC.....................2711.0010010
droYak3
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAAGGATCACCC-TCACCGC---------------C-CACTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ATAGTACCTTAAAAAAAA---------------CACA-------------------------------------------------------------------------------CACAAATACCGTTAAAAGTT-------CTG-------GTTCTGTTCTTTGTTT-------------------------------------------ATTTAT-------A---T--ATTTTACCCATTAA---CCTAC---------TTGT-------TAATTTA--TTTCAAG--CCCT-----------GCTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AAAATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....AGCATCGCCACCACGGCCACGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGCAGCGCAAGTCGAGCA..................................2411.00101000000000
..............................................................GACC--TC--GAAAGGATCACCC-T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
......................................................................................................................................................................................................................................................................................................................TAAAAGTT-------CTG-------GTTCTGTTCTT..........................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................A----------CA---------CCC--ATAGTACCTTAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAGCACGCCCGTTAAGC......................2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAATTTTAGCGACGCCGAAA..2311.00100010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGTCGAGCACGCCCGTT..........................2111.00100001000000
....................................................................................................................................................................................................................................................................................................................GTTAAAAGTT-------CTG-------GTTCTGTTC............................................................................................................................................................................................................................................................................................................2211.00101000000000
........................................GAATGCTCAGGTATAAG-CGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
TGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCATGAATGCTCAGGTATAAG-CGGTGACC--TC--GAAGGGATCA--CCTCACCAC---------------C-CAGTTCTCC--------------------------CACAGAAAGAA----------CA---------CCC--ACAGTACCTACAAAAAAAAAAA--AAAAAA--GAAAA-------------------------------------------------------------------------------AACACACACCG-------TT-------CTG-------GTTCTGTACTTTGTTA-------------------------------------------ATTTTT-------A---T--ATTTTACCCACTAA---CCTAC---------TTGT-------TAATTT---TTTTGAG--CCCT-----------GGTACTAACG-CGTT-----CC--AATTCT------------AATCGC-AA-ATCC---------C---------------------------TTCCGTTCCTAGCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGCCGAAAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................A-------------------------------------------------------------------------------AACACACACCG-------TT-------CTG-------GTTC.................................................................................................................................................................................................................................................................................................................2111.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TTTTGAG--CCCT-----------GGTACTAACG-C...............................................................................................................................................2411.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTT---TTTTGAG--CCCT-----------GGTACTAA...................................................................................................................................................2411.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACGCCCGTTAAGCC.....................1811.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGCAGCGCAAGTCGAGCAC.................................2511.0010100000
.............CACCACGGCCACGTCGCGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAG--CCCT-----------GGTACTAACG-C...............................................................................................................................................2211.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTCCTAGCAGCGCAAGTCGA.....................................2311.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTCGAGCACGCCCGTTAAG.......................2311.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGCACGCCCGTTAAGCC.....................2111.0010010000

Generated: 05/18/2015 at 12:53 AM