dps_1518

CDS [Dpse\GA25805-cds]; exon [dpse_GLEANR_2082:20]; exon [dpse_GLEANR_2082:19]; CDS [Dpse\GA25805-cds]; intron [Dpse\GA25805-in]

##################################################---------------------------------------------------------------------------------------------------------------------------------################################################## TTCCTGCCCTATCGAGCGCCCTAATTGCTGAGCCATTTGTAGCTAACACGGTAAGCACTCTAAGTACTATCATTAATATTGAACAAAACTCTGCACTTGATAAAATCTTTGAAATTCCCACATTTGATATACTTAAACTTAATATTGCTGAGGTTAATTATCACATAATCAATTCCAAGGCTAAAGAAATCGATCAATCGGCATCCGTTCAATCAGTAGAGGTTCCGTC ****************************************************......((((((.(((((........(((((((....................))))...))).......)))))))))))..................**************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	GSM444067 head	GSM343916 embryo	V112 male body	M062 head	SRR902012 CNS imaginal disc
.....................................CGTAGCTAACGCGATAAGCA............................................................................................................................................................................	20	3	1	37.00	37	27	0	7	0	3	0	0
......................................GTAGCTAACGCGATAAGCA............................................................................................................................................................................	19	2	1	22.00	22	16	0	6	0	0	0	0
.....................................CGTAGCTAACGCGATAAGC.............................................................................................................................................................................	19	3	4	15.25	61	56	0	3	0	1	1	0
.....................................CGTAGCTAACGCGATAAGCAC...........................................................................................................................................................................	21	3	1	13.00	13	12	0	1	0	0	0	0
......................................GTAGCTAACGCGATAAGCAC...........................................................................................................................................................................	20	2	1	10.00	10	8	0	1	0	0	1	0
......................................GTAGCTAACGCGATAAGC.............................................................................................................................................................................	18	2	1	7.00	7	7	0	0	0	0	0	0
........................................AGCTAACGCGATAAGCACAC.........................................................................................................................................................................	20	3	5	6.00	30	30	0	0	0	0	0	0
......................................GTAGCTAACGCGATAAGCACA..........................................................................................................................................................................	21	3	1	5.00	5	5	0	0	0	0	0	0
......................................GTAGCTAACGCGATAAGCACAC.........................................................................................................................................................................	22	3	1	5.00	5	5	0	0	0	0	0	0
..........................................................................................................................................................................................................ATCCGTTCAATCAGTAGAGG.......	20	0	1	3.00	3	3	0	0	0	0	0	0
.......................................TAGCTAACGCGATAAGCACAC.........................................................................................................................................................................	21	3	2	2.50	5	5	0	0	0	0	0	0
................................................................................................................................................................................................................TCAATCAGTAGAGGTTCCGT.	20	0	1	2.00	2	1	1	0	0	0	0	0
............................................AACACGGTAAGCACTCTAAGTACT.................................................................................................................................................................	24	0	1	2.00	2	1	0	0	1	0	0	0
..................................ATTTGTAGCTAACACGGT.................................................................................................................................................................................	18	0	1	2.00	2	1	0	0	1	0	0	0
........................................AGCTAACGCATTAAGCACTC.........................................................................................................................................................................	20	3	5	1.40	7	6	1	0	0	0	0	0
......................................................GCACTCTAAGTACTATCATT...........................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
....................................TCGTAGCTAACGCGATAAGCAC...........................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................ATACTTAAACTTAATATTGCTGAGG............................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................ATATTGCTGAGGTTAATTATCACATAATC...........................................................	29	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................ATAATCAATTCCAAGGCTAAAGAAATC......................................	27	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................CAATCAGTAGAGGTTCCGC.	19	1	1	1.00	1	0	1	0	0	0	0	0
.........................................GCTAACACGGTAAGCACTCT........................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
..............................AGCCATTTGTAGCTAACACG...................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................TATCACATAATCAATTCCAAGGCC...............................................	24	1	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................TCCGTTCAATCAGTAGAGGTTCCGT.	25	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................CAATCAGTAGAGGTTCCGT.	19	0	1	1.00	1	0	0	0	0	1	0	0
..............................AGCCATTTGTAGCTAACACGGC.................................................................................................................................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0
................................................................................GAACAAAACTCTGCACTTGATA...............................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................TAAAGAAATCGATCAATCGGCATCCG......................	26	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................AAAATCTTTGAAATTCCCACA...........................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................AGAAATCGATCAATCGGCATCCGTTC...................	26	0	1	1.00	1	0	1	0	0	0	0	0
.........................................GCTAACACGGTAAGCACTCTAAGTA...................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................TATCACATAATCAATTCCAAGGCT...............................................	24	0	1	1.00	1	0	1	0	0	0	0	0
............................................AACACGGTAAGCACTCTAAGTAC..................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................ATTGAACAAAACTCTGCACTTGAT................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0
.....................TAATTGCTGAGCCATTTGTAGC..........................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0
................................................................................GAACAAAACTCTGCACTTG..................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................ATCACATAATCAATTCCAAG..................................................	20	0	1	1.00	1	0	0	0	1	0	0	0
..................................ATTTGTAGCTAACACGGTAA...............................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................CATAATCAATTCCAAGGCTAAAGAAATC......................................	28	0	1	1.00	1	0	1	0	0	0	0	0
..............................ATCCATTTGTAGCTAACACGGT.................................................................................................................................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................ATCCGTTCAATCAGTAGAGGTTCCGT.	26	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................TAAACTTAATATTGCTGAGGTT..........................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
.......................ATTGCTGAGCCATTTGTAGCT.........................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................ATAATCAATTCCAAGGCTAAAG...........................................	22	0	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................ACATAATCAATTCCAAGGCT...............................................	20	0	1	1.00	1	0	1	0	0	0	0	0
...............................GCCATTTGTAGCTAACACGGTAAGC.............................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0
............................................................................TATTGAACAAAACTCTGCACTT...................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................GAAATCGATCAATCGGCATCCGTT....................	24	0	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................ATCTTTGAAATTCCCACATTT........................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................ATCCGTTCAATCTGTAGAGG.......	20	1	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................ATCACATAATCAATTCCAAGGCT...............................................	23	0	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................CACTTGATAAAATCTTTGAAATTCCC..............................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................ATCGATCAATCGGCATCCGTTCAATC...............	26	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................ATCACATAATCAATTCCAAGGCTAAA............................................	26	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................AAAATCTTTGAAATTCCCAC............................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................AAGGCTAAAGAAATCGATCAATCGGC...........................	26	0	1	1.00	1	0	0	0	0	0	0	1
.....................................TGTAGCTAACACGGTAAG..............................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
.........TATCGAGCGCCCTAATTGCTGAGC....................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0
..............................................................................TTGAACAAAACTCTGCACTTG..................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................TTTGCTGAGGTTAATTATCAC.................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................AAACTTAATATTGCTGAGGTTA.........................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................ATCACATAATCAATTCCAAGG.................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................AATTCCAAGGCTAAAGAAATC......................................	21	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................AATCGAGCAATCGGCATCCGTT....................	22	1	1	1.00	1	0	1	0	0	0	0	0
............................TGAGCCATTTGTAGCTAACACGGTA................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................GGCTAAAGAAATCGATCAATCGGCATCCG......................	29	0	1	1.00	1	0	1	0	0	0	0	0
.......................................TAGCTAACGCGATAAGCAC...........................................................................................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0
.....GCCCTATCGAGCGCCCTAATTGCTGAGC....................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0
.......................................TAGCTAACGCGATAAGCA............................................................................................................................................................................	18	2	2	0.50	1	1	0	0	0	0	0	0
.........................................GCTAACGCGATAAGCACAC.........................................................................................................................................................................	19	3	20	0.40	8	8	0	0	0	0	0	0
....................................TCGTAGCTAACGCGATAAGC.............................................................................................................................................................................	20	3	3	0.33	1	1	0	0	0	0	0	0
...............................................................................................................................................ATGGTTGAGGTTAATTATAACA................................................................	22	3	4	0.25	1	0	1	0	0	0	0	0
........................................AGCTAACGCGCTAAGCACAC.........................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	0	1	0
........................................AGCTAACGCGATAAGCACA..........................................................................................................................................................................	19	3	13	0.15	2	2	0	0	0	0	0	0

AAGGACGGGATAGCTCGCGGGATTAACGACTCGGTAAACATCGATTGTGCCATTCGTGAGATTCATGATAGTAATTATAACTTGTTTTGAGACGTGAACTATTTTAGAAACTTTAAGGGTGTAAACTATATGAATTTGAATTATAACGACTCCAATTAATAGTGTATTAGTTAAGGTTCCGATTTCTTTAGCTAGTTAGCCGTAGGCAAGTTAGTCATCTCCAAGGCAG **************************************************************************......((((((.(((((........(((((((....................))))...))).......)))))))))))..................****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V112 male body	GSM444067 head	GSM343916 embryo	M040 female body
...........................................................................................................................................................................................TTAGCTAGTTAGCCGTAGGCA.....................	21	0	1	1.00	1	1	0	0	0
.........................................................................................AGTGGTGAACAATTTTAGAAA.......................................................................................................................	21	3	3	0.33	1	0	0	1	0
.......GGATAGTGCGCGGGATTA............................................................................................................................................................................................................	18	2	3	0.33	1	0	1	0	0
...................................................................................................................................................................................................TTAGCTGTAGGCAAGTGCGT..............	20	3	5	0.20	1	0	0	0	1
......AGGATAGCGCGCTGGATT.............................................................................................................................................................................................................	18	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
dp5	4_group3:2731502-2731730 -	dps_1518	TTCCTGCCCTATCGAGCGCCCTAATTGCTGAGCCATTTGTAGCTAACACGGTAAGCACTCTAAGTACTATCATTAATATTGAACA---AAACTCTGCACTTGATAAAATCTTTGAAATTCCCACATTTGATATACTTAAACTTAATATTGCTGAGGTTAATTATCACATAATCAATTCCAAGGCTAAAGAAATCGATCAATCGGCATC---------------------------CGT------TCAA---TC------AGTAGAGGTTCCGTC
droPer2	scaffold_1:4217043-4217271 -		TTCCTGCCCTATCGAGCGCCCTAATTGCTGAGCCATTTGTAGCTAACACGGTAAGCACTCTAAGTACTATCATTAATATTGAACA---AAACTCTGCACTTGATAAAATCTTTGAAATTCCCACATTTGATATACTTAAACTTAATATTGCTGAGGTTAATTATCACATAATCAATTCCAAGGCTAAAGAAATCGATCAATCGGCATC---------------------------CGT------TCAA---TC------AGTAGAGGTTCCGTC
droWil2	scf2_1100000004585:1113228-1113474 -		TTCCTGCCAAACCAAGTGTATTAATTGCTGAAGCATCTGTAGCTAACACGGTAAGCACATTAAATACAATCACTAATATTGCAAACGTTATTACTTCCGTTGATAAGATCTTTGATATTCCAAAATATGATATATCTAAATTTGTTATTGCTGAGGGTTTTTATCACATAATCAATTCTAAGGCTCAAGAAGTAGTTTCTCCTAAACCAGAGGAGGAGGAAAATAC---------TTT------C------CC------TGTTCTAGTTACTTT
droVir3	scaffold_12963:6430146-6430320 -		CTCCTGCCAAGCCAAGCGCATTAACTGCTGAAGCATTTGTGGTTAACACGGTAAGCACTTCAAATA---TCACTAATATACAAAC---TCTTACTCCAGCTGATAAGATTTATGAAATTCCCAAATACAATTTATCTCAATTTAATATTGCTGAGAGTCAATATCACATAATTAATTCTAA---------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:25575759-25576002 -		TTCCTGCCAAGCCAAGCGCATTAACTGCTGAAGCATTTGTGGTTAACACGGTAAGCACTTTAAATA---ACACTAATATTCCAAC---TGTTTGTCCAGCTGATAAAATTTATGAAATTCCAAAATACAATTTATCTCAATTCAATGTAGCTGAGAGCAATTATCATATAATCAATTCTAAGCCCCTG------------------TC------TGTAGAAACTACTTTACCTTTGTTATCTGATCAACAGCAAATTATTGCTGAAGAACCTTT
droGri2	scaffold_15252:9659666-9659841 -		TTCCTGCCAAGCCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAATA---TCACTAATATTCCAAT---TATTTGTCCCACTGAAAAGATTTTTGAAACTCCCAAATATGATTTATCTCAATATAATACTGCTGAGGCCAATTATCACATAATCAATTCTAAG--------------------------------------------------------------------------------------------
droAna3	scaffold_12916:9995551-9995770 -		CTCCTGCCAATCCAAGCGCATTAATAGCT---------GTGGCTAACTCGGTAAGCACTTTAAATACAATAACTAACATTCAGCC---AATTTCTTCATTTGAAAAGATATTTGAAATTCCCAAATTTGATTTAATTAAGTTTATTAATGCTGAGGGTCAATATCACATAATTAATTTTAAGCCAGAAGAAGTTAGTACACCAACACC---------------------------ATT------AGAA---CC------AATTGATGTTTCGTT
droBip1	scf7180000396580:1038010-1038235 +		CTCCTGCCAATCCAAGCGCATTAATAGCT---------GTGGCTAACTCGGTAAGCACTTTAAATACAATAACTAACATTCAGCC---AATTTCTTCATTTGAAAAGATATTTGAAGTTCCCAAATTTGACTTATTTAAGTTTATTAATGCCGAGGGTCAATATCACATAATTAATTCTAAGACAGATGAAGTCAGTACCCCAACTCC---------------------------ATT------AGAA---CCAACTACTGCTAATGTTTCGTT
droKik1	scf7180000302643:695789-696014 -		ATCCTGCCAAACCAAGCGTATTAATTGCTGAAGCATTTGTGGCTAACTCGGTAAGCACTTTAAATACAGTCATACAACTTGAGAA---AATCTCTCCCCTTGATAAAATATTTGAAATTCCTAAATTTGATATACTTAAACTTAACACTGCTGAGGGAAATTATCACATAATTAATTCTAAGGTTCAGGAAACCACAACAGTTGAAAA---------------------------TAA------AGCA---AA------TGA---TACTTTGTC
droFic1	scf7180000453842:1074774-1075002 -		TTCCTGCCAAACCAACTGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAATATAATCACTAATATTGAGAA---AATCTCTCCCCTTGAAAAAATATTTGAAATTCCCAAATTTGATATATTAAAACTTAATGTTGCTGAGGGTAATTATCACATAATCAATTCTAAAGCTAAAGAAATAGAACAAATAAGTTC---------------------------TGC------CGAA---CC------TGAACCAGTATTGCC
droEle1	scf7180000491273:48168-48390 -		TTTCTGCCCAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACCCGGTAAGCACTTTAAATATAATCACTAATATTGAAAC---AATTTTACCCCATGAAAAAATATTTGAAATTCCCAAATTTGATATATTTAAACTTAATATCGCTGAGGATAATTATCACATAATCATTTCTAAAGCTATTGAAAATAAACAA------TC---------------------------TAT------CGAA---AC------TGTACCTGAATCGCA
droRho1	scf7180000779577:51177-51402 -		TTCCTGCCCAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAATATAATAACTAATATTGAAAA---AATGTATCCCCTTGATAAAATATTTGAAATTCCCAAATTTGATATTTCAAAACAAAATATTGCTGAGGGTAATTATCACATAATCAAATCTAAAGCTTGGGAAATTAAACAATCAAATCC---------------------------TAC------CCCA---AT------TGAACCTGAATC---
droBia1	scf7180000302261:608449-608677 +		TTCCTGCCCAACCAAGCGCATTACTTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTACAATCACTAATATTGAGAA---ACTTGCTCCCATCGAAAAAGTATTTGAAATTCCTAAATTTGATGTATCTACATTTAATATTGCTGAGGGTAATTATCACATACTCAATTCTAAAGTTAAAGAAATTGAACCATTAAATCC---------------------------TAT------CGAA---TG------TGAAACAAAATCTTC
droTak1	scf7180000415704:358262-358490 -		TTTCTGCCCAACCAAGCGCATTAATTGCTGACGCATTTGTGGCTAACACGGTAAGCACTTTAAATATAATCACTAATGTTGAGCC---ACTTTCTCCCCTTGAAAAAATATTTGAAATTCCCAAATTTGATTTATCTACATTTAATATTGCTGAGGGTAATTATCACATAATCAATTCTAAAGGTAAAGAAATCGAACCAGTAAATTC---------------------------TAC------AGAA---CC------TGAACCTATACATTC
droEug1	scf7180000409005:1055355-1055568 +		TTCCTGCCAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTGAATATAATCACTAATATTGAGCA---AATTTCTCCCCTTGAAAAAATATTTGAAATTCCCAAATTTGACATTTCTATACTTAATATTGCTGAGGGTAATTATCACATAATCAATTCTAAAGTGAAAGAAATCGAATCAG---------------------------------------------------C------TGAGTCTGTATTGCC
dm3	chr2L:5165350-5165578 +		TTCCTGATAAACATAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATATCCAAATTTACTATTGCTGAGGGTAATTATCACATAATAAATTCTAAAACTAAACCAATTGAGAAGTTGGATCC---------------------------TAC------CGAA---AC------TGTTCCCGTATCGCC
droSim2	2l:4978426-4978654 +	dsi_15108	TTCCTGATAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATATCCAAATTTACTATTGCTGAGGGTAATTATCACATTATAAATTCTAAAGCTAAAGCAATTGAGAAGTTAAGTCC---------------------------TAC------CGAA---CT------TGATCCTGTATCGCC
droSec2	scaffold_5:3251642-3251870 +		TTCCTGATAAACCAAGCGCATTAATGGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATATCCAAATTTACTATTGCTGAGGGTAATTATCACATTATAAATTCTAAAGCTAAAGCAATTGAGAAGTTAAGTCC---------------------------TAC------CGAA---CC------TGATCCTGTATCGCC
droYak3	2L:10358753-10358981 -		TTCCTGATAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCCCCTGTGAACAAAATATTTGAAGTTCCCAAATTTGACATATCCAAACTTACTATTGCTGAGGGTAATTATCACATAATTAATTCTAAAACTAAAGCAGCTGAGCAGGTAAACCC---------------------------TAT------CGAA---CC------TGAACCTGTATTGCC
droEre2	scaffold_4929:5246398-5246626 +		TACCTGATAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATCTCCAAACTTACTATTGCTGAGGGTAATTATCACATAATAAATTCTAAGTCTAAAGCAATTGAGCAGGTAAATCC---------------------------TAT------CGAA---CC------TGATCCTGTATCGCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

TTCCTGCCCTATCGAGCGCCCTAATTGCTGAGCCATTTGTAGCTAACACGGTAAGCACTCTAAGTACTATCATTAATATTGAACA---AAACTCTGCACTTGATAAAATCTTTGAAATTCCCACATTTGATATACTTAAACTTAATATTGCTGAGGTTAATTATCACATAATCAATTCCAAGGCTAAAGAAATCGATCAATCGGCATC---------------------------CGT------TCAA---TC------AGTAGAGGTTCCGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................ATC---------------------------CGT------TCAA---TC------AGTAGAGG.......	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TCAA---TC------AGTAGAGGTTCCGT.	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0
............................................AACACGGTAAGCACTCTAAGTACT..............................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	1	0	0	0	0	0
..................................ATTTGTAGCTAACACGGT..............................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	0	1	0	0	0	0	0
......................................................GCACTCTAAGTACTATCATT........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................ATACTTAAACTTAATATTGCTGAGG......................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................ATATTGCTGAGGTTAATTATCACATAATC.....................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................ATAATCAATTCCAAGGCTAAAGAAATC................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAA---TC------AGTAGAGGTTCCGC.	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................GCTAACACGGTAAGCACTCT.....................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................AGCCATTTGTAGCTAACACG................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACATAATCAATTCCAAGGCC.........................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TC---------------------------CGT------TCAA---TC------AGTAGAGGTTCCGT.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAA---TC------AGTAGAGGTTCCGT.	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................AGCCATTTGTAGCTAACACGGC..............................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................GAACA---AAACTCTGCACTTGATA.........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAAAGAAATCGATCAATCGGCATC---------------------------CG.....................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................AAAATCTTTGAAATTCCCACA.....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGAAATCGATCAATCGGCATC---------------------------CGT------TC............................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................GCTAACACGGTAAGCACTCTAAGTA................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCACATAATCAATTCCAAGGCT.........................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................AACACGGTAAGCACTCTAAGTAC...............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................ATTGAACA---AAACTCTGCACTTGAT..........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................TAATTGCTGAGCCATTTGTAGC.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................GAACA---AAACTCTGCACTTG............................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACATAATCAATTCCAAG............................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................ATTTGTAGCTAACACGGTAA............................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................CATAATCAATTCCAAGGCTAAAGAAATC................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................ATC---------------------------CGT------TCAA---TC------AGTAGAGGTTCCGT.	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TAAACTTAATATTGCTGAGGTT....................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................ATTGCTGAGCCATTTGTAGCT......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................ATAATCAATTCCAAGGCTAAAG.....................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................ACATAATCAATTCCAAGGCT.........................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................GCCATTTGTAGCTAACACGGTAAGC..........................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................TATTGAACA---AAACTCTGCACTT.............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................GAAATCGATCAATCGGCATC---------------------------CGT------T.............................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................ATCTTTGAAATTCCCACATTT..................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................ATCACATAATCAATTCCAAGGCT.........................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................CACTTGATAAAATCTTTGAAATTCCC........................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................ATCGATCAATCGGCATC---------------------------CGT------TCAA---TC------...............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACATAATCAATTCCAAGGCTAAA......................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................AAAATCTTTGAAATTCCCAC......................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................AAGGCTAAAGAAATCGATCAATCGGC.....................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................TGTAGCTAACACGGTAAG...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........TATCGAGCGCCCTAATTGCTGAGC.................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................TTGAACA---AAACTCTGCACTTG............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................AAACTTAATATTGCTGAGGTTA...................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................ATCACATAATCAATTCCAAGG...........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AATTCCAAGGCTAAAGAAATC................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................TGAGCCATTTGTAGCTAACACGGTA.............................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GGCTAAAGAAATCGATCAATCGGCATC---------------------------CG.....................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....GCCCTATCGAGCGCCCTAATTGCTGAGC.................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTCCTGCCCTATCGAGCGCCCTAATTGCTGAGCCATTTGTAGCTAACACGGTAAGCACTCTAAGTACTATCATTAATATTGAACA---AAACTCTGCACTTGATAAAATCTTTGAAATTCCCACATTTGATATACTTAAACTTAATATTGCTGAGGTTAATTATCACATAATCAATTCCAAGGCTAAAGAAATCGATCAATCGGCATC---------------------------CGT------TCAA---TC------AGTAGAGGTTCCGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................ATATTGAACA---AAACTCTGCACTT.............................................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0
............................................AACACGGTAAGCACTCTAAGTACT..............................................................................................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0
......................................................................................................................................................................................GCTAAAGAAATCGATCAATCGGCATC---------------------------C......................................	27	1	3.00	3	3	0	0	0	0	0
.............................................................................................................................................................................AATTCCAAGGCTAAAGAAATCGATCA...........................................................................	26	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................GGCTAAAGAAATCGATCAATCGGCATC---------------------------C......................................	28	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................GGCTAAAGAAATCGATCAATCGGC.....................................................................	24	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................CAATTCCAAGGCTAAAGAAATC................................................................................	22	1	2.00	2	2	0	0	0	0	0
.............................................................................ATTGAACA---AAACTCTGCACT..............................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...............................................ACGGTAAGCACTCTAAGTACT..............................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
................................................................................GAACA---AAACTCTGCACTT.............................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.............................................................................ATTGAACA---AAACTCTGCAC...............................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...............................................................................TGAACA---AAACTCTGCACT..............................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................CTAAAGAAATCGATCAATCGGCATC---------------------------CGT------T.............................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................GGCTAAAGAAATCGATCAATCGGCATC---------------------------CG.....................................	29	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................AATCAATTCCAAGGCTAAAGAAATC................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................ATC---------------------------CGT------TCAA---TC------AGTAGAGGTTC....	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................CATAATCAATTCCAAGGCTAAAGAAATC................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................AATCGATCAATCGGCATC---------------------------.......................................	18	1	1.00	1	1	0	0	0	0	0
............................................AACACGGTAAGCACTCTAAGTAC...............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................TAACACGGTAAGCACTCTAAGTACTATC...........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................ATTCCAAGGCTAAAGAAATC................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................ATCAATTCCAAGGCTAAAG.....................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................AATATTGAACA---AAACTCTGCACC..............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................ATTGAACA---AAACTCTGCACTTGATAAAA......................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................TGAACA---AAACTCTGCACTT.............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................ATAAAATCTTTGAAATTCCCACA.....................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................AATTCCAAGGCTAAAGAAATC................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................AATATTGAACA---AAACTCTGCACT..............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................CTAAAGAAATCGATCAATCGGC.....................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................ATC---------------------------CGT------TCAA---TC------AGTAGAGG.......	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................CTTTGAAATTCCCACATTTG.................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................ATTAATATTGAACA---AAACT.....................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................GT------TCAA---TC------AGTAGAGGTTCCGT.	22	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................CAATTCCAAGGCTAAAGAAATCGATCA...........................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................GAAATCGATCAATCGGCATC---------------------------C......................................	21	1	1.00	1	1	0	0	0	0	0
...........................................TAACACGGTAAGCACTCTAAGTACT..............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................AAGAAATCGATCAATCGGC.....................................................................	19	1	1.00	1	0	0	1	0	0	0
.......CCTATCGAGCGCCCTAATTGCTGAGC.................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
....................................................................................A---AAACTCTGCACTTGATAAAATCT...................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................................AACACGGTAAGCACTCTAAGTACTATC...........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................CACGGTAAGCACTCTAAGTACT..............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droWil2

TTCCTGCCAAACCAAGTGTATTAATTGCTGAAGCATCTGTAGCTAACACGGTAAGCACATTAAATACAATCACTAATATTGCAAACGTTATTACTTCCGTTGATAAGATCTTTGATATTCCAAAATATGATATATCTAAATTTGTTATTGCTGAGGGTTTTTATCACATAATCAATTCTAAGGCTCAAGAAGTAGTTTCTCCTAAACCAGAGGAGGAGGAAAATAC---------TTT------C------CC------TGTTCTAGTTACTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................CTAAATTTGTTATTGCTGAGGGT....................................................................................................................	23	1	8.00	8	0	0	4	4	0
.......................................................................................................................................CTAAATTTGTTATTGCTGAGG......................................................................................................................	21	1	3.00	3	0	0	0	3	0
...........................................................................................................................................ATTTGTTATTGCTGAGGGT....................................................................................................................	19	1	3.00	3	0	0	1	2	0
............................................AACACGGTAAGCACATTAAATAC...............................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
..................................................................................................................................TATATCTAAATTTGTTATTGCTGAGGGT....................................................................................................................	28	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................CTCAAGAAGTAGTTTCTCCTAAAC...................................................................	24	1	2.00	2	2	0	0	0	0
.............................................ACACGGTAAGCACATTAAATA................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
....................................CTGTAGCTAACACGGTAAGCA.........................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
..................................ATCTGTAGCTAACACGGTAAGCA.........................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
.......................ATTGCTGAAGCATCTGTAGCT......................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
.........AACCAAGTGTATTAATTGCTGAAGC................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
.............................................................................................................................................................................AATTCTAAGGCTCAAGAA...................................................................................	18	1	2.00	2	0	1	0	1	0
...........................................................................................TACTTCCGTTGATAAGATCTTTGAT..............................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................................CTAAGGCTCAAGAAGTAGT..............................................................................	19	1	2.00	2	0	0	2	0	0
.........................................................................................................................................................................................................CTAAACCAGAGGAGGAGGA......................................................	19	1	2.00	2	0	1	0	1	0
......................AATTGCTGAAGCATCTGTAGCT......................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
..........................................................................................................................................................................ATCAATTCTAAGGCTCAAGAAGT.................................................................................	23	1	2.00	2	0	0	0	2	0
...........................................................................................................................................................................................................AAACCAGAGGAGGAGGAA.....................................................	18	1	2.00	2	0	0	1	1	0
...................ATTAATTGCTGAAGCATCTGTAGCT......................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
...................................................................................................................................ATATCTAAATTTGTTATTGCTGAGGGT....................................................................................................................	27	1	2.00	2	0	0	1	1	0
................................................................................................CCGTTGATAAGATCTTTGAT..............................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.............AAGTGTATTAATTGCTGAAGCA...............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................TAGTTTCTCCTAAACCAGAGGAGGAGGA......................................................	28	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................TTCTCCTAAACCAGAGGAGGAGGA......................................................	24	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................AATCAATTCTAAGGCTCAAGAAGTAGT..............................................................................	27	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................AAGGCTCAAGAAGTAGTTTCT..........................................................................	21	1	1.00	1	0	1	0	0	0
.......CAAACCAAGTGTATTAATTGCT.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.........................................................................................ATTACTTCCGTTGATAAGATCTTTGATA.............................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.........................................................................................................................................AAATTTGTTATTGCTGAG.......................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................TAAACCAGAGGAGGAGGA......................................................	18	1	1.00	1	0	0	0	1	0
...................................................................................................................................ATATCTAAATTTGTTATTGCTGAGG......................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................AGTTTCTCCTAAACCAGAGGAGGAG........................................................	25	1	1.00	1	0	0	0	1	0
...........................................TAACACGGTAAGCACATTAAATAC...............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.................................CATCTGTAGCTAACACGGTAAGC..........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
......................................GTAGCTAACACGGTAAGC..........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................................ATCTAAATTTGTTATTGCTGAGGGT....................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....................................................................................................................................ATCTAAATTTGTTATTGCT..........................................................................................................................	19	1	1.00	1	0	0	0	1	0
................................................................................GCAAACGTTATTACTTCCGT..............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................TTCCGTTGATAAGATCTTTGAT..............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................CCTAAACCAGAGGAGGAGGA......................................................	20	1	1.00	1	0	0	0	1	0
........................TTGCTGAAGCATCTGTAGCTAACA..................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.........................TGCTGAAGCATCTGTAGCT......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................CAATTCTAAGGCTCAAGAAGT.................................................................................	21	1	1.00	1	0	0	1	0	0
..........................................................................................................................................AATTTGTTATTGCTGAGG......................................................................................................................	18	1	1.00	1	0	0	0	1	0
.......................ATTGCTGAAGCATCTGTAGC.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................AATCAATTCTAAGGCTCAAGAAG..................................................................................	23	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................CAATTCTAAGGCTCAAGAAGTAGT..............................................................................	24	1	1.00	1	0	0	0	1	0
.................................................................................................................................................TATTGCTGAGGGTTTTTATCACATAAT......................................................................................................	27	1	1.00	1	0	0	1	0	0
................................GCATCTGTAGCTAACACGGG..............................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................TCTAAGGCTCAAGAAGTAGT..............................................................................	20	1	1.00	1	0	0	1	0	0
.....................TAATTGCTGAAGCATCTGTAGCT......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................CCTAAACCAGAGGAGGAGG.......................................................	19	1	1.00	1	0	0	1	0	0
.............................GAAGCATCTGTAGCTAACACGGTAAG...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................TAAACCAGAGGAGGAGGAAAATAC---------T......................................	25	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................CAATTCTAAGGCTCAAGAAGTAGTT.............................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................TTGCAAACGTTATTACTTCC................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................................................ATATTGCAAACGTTATTACTTCC................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.........................................................................................................................................AAATTTGTTATTGCTGAGGGT....................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................ATCTGTAGCTAACACGGT..............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................TACTTCCGTTGATAAGATCTTTGATA.............................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.........................TGCTGAAGCATCTGTAGCTAACACGG...............................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
............................................AACACGGTAAGCACATTAAATACA..............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............CAAGTGTATTAATTGCTGAAGC................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................CTAAGGCTCAAGAAGTAGTTTCT..........................................................................	23	1	1.00	1	0	1	0	0	0
...........................................................................ATATTGCAAACGTTATTACTTCCGT..............................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................CCTAAACCAGAGGAGGAGGAAA....................................................	22	1	1.00	1	0	1	0	0	0
.....................................TGTAGCTAACACGGTAAGC..........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.................................................................................................CGTTGATAAGATCTTTGAT..............................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................ATCAATTCTAAGGCTCAAG.....................................................................................	19	1	1.00	1	0	0	0	1	0
.................GTATTAATTGCTGAAGCATCTGTA.........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
TTCCTGCCAAACCAAGTGTATTA...........................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................TGTTATTGCTGAGGGTTTTTAT..............................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................TAAACCAGAGGAGGAGGAA.....................................................	19	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................AGTTTCTCCTAAACCAGAGGAGGAGGA......................................................	27	1	1.00	1	0	1	0	0	0
.........................................................................................ATTACTTCCGTTGATAAGATCTTTGAT..............................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.........AACCAAGTGTATTAATTGCTGA...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................AATTTGTTATTGCTGAGGGT....................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................................................................................TTACTTCCGTTGATAAGATCTTTGAT..............................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................CTAAACCAGAGGAGGAGGAAAAT..................................................	23	1	1.00	1	0	0	1	0	0
...........................................................................................TACTTCCGTTGATAAGATCTTTGA...............................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.................GTATTAATTGCTGAAGCATCTGT..........................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
............................................................................................ACTTCCGTTGATAAGATCTTTGAT..............................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................CAATTCTAAGGCTCAAGA....................................................................................	18	1	1.00	1	0	0	0	1	0

droVir3

CTCCTGCCAAGCCAAGCGCATTAACTGCTGAAGCATTTGTGGTTAACACGGTAAGCACTTCAAATA---TCACTAATATACAAAC---TCTTACTCCAGCTGATAAGATTTATGAAATTCCCAAATACAATTTATCTCAATTTAATATTGCTGAGAGTCAATATCACATAATTAATTCTAA---------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................ATACAAAC---TCTTACTCCAGCTGATAA........................................................................................................................................................................	26	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................CCAGCTGATAAGATTTATGA...............................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACTGCTGAAGCATTTGTGGT.......................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................ATACAAAC---TCTTACTCCAGCT.............................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GCATTAACTGCTGAAGCATT.............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ACTGCTGAAGCATTTGTGGTT......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................TTAACTGCTGAAGCATTTGTGGTT......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................TTAACTGCTGAAGCATTTGTGGTTAACA..................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TGATAAGATTTATGAAATTCCCAAATACA.................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CGCATTAACTGCTGAAGCATTTGTGGT.......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATTTGTGGTTAACACGGTAAGCACT.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCGCATTAACTGCTGAAGCATTTG...........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CTGCCAAGCCAAGCGCATTAAC.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATTTGTGGTTAACACGGTAAGCA.........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................ACACGGTAAGCACTTCAAAT.................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TACTCCAGCTGATAAGATTTATGAA..............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACGGTAAGCACTTCAAATA---TCACT........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GTTAACACGGTAAGCACTT......................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAACTGCTGAAGCATTTGTG.........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATACAAAC---TCTTACTCCAGCTGATAAG.......................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ACTGCTGAAGCATTTGTGGT.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................ACTGCTGAAGCATTTGTG.........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TATTGCTGAGAGTCAATATCACA..........................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AATATACAAAC---TCTTACTCC.................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GAAGCATTTGTGGTTAACACG................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATACAATTTATCTCAATTTAAT................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CGCATTAACTGCTGAAGCATTTGT..........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................ATACAAAC---TCTTACTCCAGCTG............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CTCAATTTAATATTGCTGAGA......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TATTGCTGAGAGTCAATATC.............................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCGCATTAACTGCTGAAGCA...............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................ATACAAAC---TCTTACTCCAGCTGAT..........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ACTCCAGCTGATAAGATTTATGAA..............................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GAGAGTCAATATCACATA........................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACTGCTGAAGCATTTGT..........................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTGCTGAGAGTCAATATCACA..........................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

TTCCTGCCAAGCCAAGCGCATTAACTGCTGAAGCATTTGTGGTTAACACGGTAAGCACTTTAAATA---ACACTAATATTCCAAC---TGTTTGTCCAGCTGATAAAATTTATGAAATTCCAAAATACAATTTATCTCAATTCAATGTAGCTGAGAGCAATTATCATATAATCAATTCTAAGCCCCTG------------------TC------TGTAGAAACTACTTTACCTTTGTTATCTGATCAACAGCAAATTATTGCTGAAGAACCTTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................GAGCAATTATCATATAATCA....................................................................................................	20	1	2.00	2	2	0	0	0	0	0
......................AACTGCTGAAGCATTTGTGGT.......................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	1	0	0
.......................................................................................................................................................................ATAATCAATTCTAAGCCCCT.......................................................................................	20	1	2.00	2	2	0	0	0	0	0
.............................................................................ATTCCAAC---TGTTTGTCCAGCTGATAA........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................TGCTGAAGCATTTGTGGTTAACACGGT..............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0
..............................AAGCATTTGTGGTTAACACGG...............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................GCATTAACTGCTGAAGCATTTGTGGT.......................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................ACAATTTATCTCAATTCAATGTAGCT..........................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................TCTAAGCCCCTG------------------TC------TGTAGAAA....................................................	22	1	1.00	1	1	0	0	0	0	0
......................AACTGCTGAAGCATTTGTGGTT......................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................ATAATCAATTCTAAGCCCCTG------------------TC------TGTAG.......................................................	28	1	1.00	1	1	0	0	0	0	0
............................TGAAGCATTTGTGGTTAACACGGTAAG...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................ACTGCTGAAGCATTTGTGGTT......................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................GTAGAAACTACTTTACCTTTGTT....................................	23	1	1.00	1	1	0	0	0	0	0
............................................AACACGGTAAGCACTTTAAAT.................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................GGTAAGCACTTTAAATA---ACACT........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................GTTAACACGGTAAGCACTTTAA...................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....GCCAAGCCAAGCGCATTAACTGCTGAAG.................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................TTCAATGTAGCTGAGAGCAATTATCAT...........................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................CAATTCAATGTAGCTGAGA......................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................GAAGCATTTGTGGTTAACACGGTA.............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...................................TTTGTGGTTAACACGGTAAGCA.........................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................CAATTCTAAGCCCCTG------------------TC------TGTAG.......................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................ACTTTACCTTTGTTATCTGAT.............................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................TTCAATGTAGCTGAGAGCAA..................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CTACTTTACCTTTGTTATCTG...............................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................CTGATCAACAGCAAATTATTGCT...........	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................AAGCCCCTG------------------TC------TGTAGAAA....................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................ATTTATCTCAATTCAATGTAGCT..........................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................TGCTGAAGCATTTGTGGTTAACACGGTA.............................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................TGAAGCATTTGTGGTTAACAC.................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................ACTGCTGAAGCATTTGTGGT.......................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................GTAGCTGAGAGCAATTATCATATA........................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................TTGTCCAGCTGATAAAATTT...................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................AATTCAATGTAGCTGAGAG.....................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........AAGCCAAGCGCATTAACTGCTGAAG.................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................CAATTCTAAGCCCCTG------------------TC------TGT.........................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................ATTCAATGTAGCTGAGAG.....................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................AATTATTGCTGAAGAACCT..	19	1	1.00	1	0	0	0	0	0	1

droGri2

TTCCTGCCAAGCCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAATA---TCACTAATATTCCAAT---TATTTGTCCCACTGAAAAGATTTTTGAAACTCCCAAATATGATTTATCTCAATATAATACTGCTGAGGCCAATTATCACATAATCAATTCTAAG--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................TGAAACTCCCAAATATGATTTATC..........................................................................................................................................	24	2	0.50	1	1	0

droAna3

CTCCTGCCAATCCAAGCGCATTAATAGCT---------GTGGCTAACTCGGTAAGCACTTTAAATACAATAACTAACATTCAGCC---AATTTCTTCATTTGAAAAGATATTTGAAATTCCCAAATTTGATTTAATTAAGTTTATTAATGCTGAGGGTCAATATCACATAATTAATTTTAAGCCAGAAGAAGTTAGTACACCAACACC---------------------------ATT------AGAA---CC------AATTGATGTTTCGTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................CT---------GTGGCTAACTCGGTAAGC..........................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................CACC---------------------------ATT------AGAA---CC------AATTGAT........	20	1	1.00	1	0	1	0	0	0	0
....................................................................ATAACTAACATTCAGCC---AATTTCTTC.................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................CAACACC---------------------------ATT------AGAA---CC------AATTGAC........	23	1	1.00	1	0	1	0	0	0	0
..........................................CTAACTCGGTAAGCACTTTA....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................AATTAATTTTAAGCCAGAAGAAGTT................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................TTGATTTAATTAAGTTTATTAA..............................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................TTTAAGCCAGAAGAAGTT................................................................................	18	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................ACC---------------------------ATT------AGAA---CC------AATTGATGTTT....	23	1	1.00	1	0	1	0	0	0	0
.........................................................CTTTAAATACAATAACTAACATTCAGC..............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................AATAGCT---------GTGGCTAACTCGGTAAGCAC........................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................TTTATTAATGCTGAGGGTCAATATCAC...........................................................................................................	27	1	1.00	1	0	0	0	0	1	0
......................................................................AACTAACATTCAGCC---AATTTCTTCATTT.............................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.........................AGCT---------GTGGCTAACTCGGTAAGC..........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............CAAGCGCATTAATAGCT---------GTGGC.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................GTACACCAACACC---------------------------ATT------AGAA---CC------...............	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................TGAAAAGATATTTGAAATTCCC........................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................ATTAAGTTTATTAATGCTGAGGGT....................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................GTTTATTAATGCTGAGGGTC...................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...............GCGCATTAATAGCT---------GTGGCTAACT..................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................ACAATAACTAACATTCAGCC---..........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................TGAAAAGATATTTGAAATTCCCAAATTT..................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.................GCATTAATAGCT---------GTGGCT......................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.............................................................................ATTCAGCC---AATTTCTTCATTTGAAAA........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................ATTTGAAATTCCCAAATTT..................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................ATT------AGAA---CC------AATTGATGT......	18	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................AGTTTATTAATGCTGAGGGT....................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................ACACCAACACC---------------------------ATT------AGAA---CC------A..............	21	1	1.00	1	0	1	0	0	0	0

droBip1

CTCCTGCCAATCCAAGCGCATTAATAGCT---------GTGGCTAACTCGGTAAGCACTTTAAATACAATAACTAACATTCAGCC---AATTTCTTCATTTGAAAAGATATTTGAAGTTCCCAAATTTGACTTATTTAAGTTTATTAATGCCGAGGGTCAATATCACATAATTAATTCTAAGACAGATGAAGTCAGTACCCCAACTCC---------------------------ATT------AGAA---CCAACTACTGCTAATGTTTCGTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATCCTGCCAAACCAAGCGTATTAATTGCTGAAGCATTTGTGGCTAACTCGGTAAGCACTTTAAATACAGTCATACAACTTGAGAA---AATCTCTCCCCTTGATAAAATATTTGAAATTCCTAAATTTGATATACTTAAACTTAACACTGCTGAGGGAAATTATCACATAATTAATTCTAAGGTTCAGGAAACCACAACAGTTGAAAA---------------------------TAA------AGCA---AA------TGA---TACTTTGTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTCCTGCCAAACCAACTGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAATATAATCACTAATATTGAGAA---AATCTCTCCCCTTGAAAAAATATTTGAAATTCCCAAATTTGATATATTAAAACTTAATGTTGCTGAGGGTAATTATCACATAATCAATTCTAAAGCTAAAGAAATAGAACAAATAAGTTC---------------------------TGC------CGAA---CC------TGAACCAGTATTGCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTCTGCCCAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACCCGGTAAGCACTTTAAATATAATCACTAATATTGAAAC---AATTTTACCCCATGAAAAAATATTTGAAATTCCCAAATTTGATATATTTAAACTTAATATCGCTGAGGATAATTATCACATAATCATTTCTAAAGCTATTGAAAATAAACAA------TC---------------------------TAT------CGAA---AC------TGTACCTGAATCGCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCCTGCCCAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAATATAATAACTAATATTGAAAA---AATGTATCCCCTTGATAAAATATTTGAAATTCCCAAATTTGATATTTCAAAACAAAATATTGCTGAGGGTAATTATCACATAATCAAATCTAAAGCTTGGGAAATTAAACAATCAAATCC---------------------------TAC------CCCA---AT------TGAACCTGAATC---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCCTGCCCAACCAAGCGCATTACTTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTACAATCACTAATATTGAGAA---ACTTGCTCCCATCGAAAAAGTATTTGAAATTCCTAAATTTGATGTATCTACATTTAATATTGCTGAGGGTAATTATCACATACTCAATTCTAAAGTTAAAGAAATTGAACCATTAAATCC---------------------------TAT------CGAA---TG------TGAAACAAAATCTTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTCTGCCCAACCAAGCGCATTAATTGCTGACGCATTTGTGGCTAACACGGTAAGCACTTTAAATATAATCACTAATGTTGAGCC---ACTTTCTCCCCTTGAAAAAATATTTGAAATTCCCAAATTTGATTTATCTACATTTAATATTGCTGAGGGTAATTATCACATAATCAATTCTAAAGGTAAAGAAATCGAACCAGTAAATTC---------------------------TAC------AGAA---CC------TGAACCTATACATTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTCCTGCCAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTGAATATAATCACTAATATTGAGCA---AATTTCTCCCCTTGAAAAAATATTTGAAATTCCCAAATTTGACATTTCTATACTTAATATTGCTGAGGGTAATTATCACATAATCAATTCTAAAGTGAAAGAAATCGAATCAG---------------------------------------------------C------TGAGTCTGTATTGCC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCCTGATAAACATAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATATCCAAATTTACTATTGCTGAGGGTAATTATCACATAATAAATTCTAAAACTAAACCAATTGAGAAGTTGGATCC---------------------------TAC------CGAA---AC------TGTTCCCGTATCGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................AAATTTACTATTGCTGAGGGT....................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
...............GCGCATTAATTGCTGAAGC................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCTAAAACTAAACCAATTGAGAAGT.........................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGAGAAGTTGGATCC---------------------------TAC------CGAA---A......................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................TACTATTGCTGAGGGTAATTATCA............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................ATAATCACTAATATTGAGA..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCCTGATAAACATAGCGCATTAATTGCT.....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTCCTGATAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATATCCAAATTTACTATTGCTGAGGGTAATTATCACATTATAAATTCTAAAGCTAAAGCAATTGAGAAGTTAAGTCC---------------------------TAC------CGAA---CT------TGATCCTGTATCGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................TTTGACATATCCAAATTTACTATTGCT..........................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTCC---------------------------TAC------CGAA---CT------TGATCCTGC......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTCC---------------------------TAC------CGAA---CT------TGATCCT........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATTGAGAA---ACTTTCACCTTT..............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................AACACGGTAAGCACTTTAAG..................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................TTACTATTGCTGAGGGTA...................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GCTGAAGCATTTGTGGCTAACACGGTA.............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TAAGTCC---------------------------TAC------CGAA---CT------TGATCCT........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................ATAATCACTAATATTGAGAA---ACTTT.....................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAAAGCTAAAGCAATTGAGAAGTTAAG.....................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTCC---------------------------TAC------CGAA---CT------TGATCCT........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCTAAAGCTAAAGCAATTG...............................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGACATATCCAAATTTACTATTGCTGAGG......................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TAC------CGAA---CT------TGATCCTGTATCGCC	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AAATTTACTATTGCTGAGGGT....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................TCC---------------------------TAC------CGAA---CT------TGATCCTGTATCGC.	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................C---------------------------TAC------CGAA---CT------TGATCCTGTATCGC.	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AAAGCTAAAGCAATTGAGA............................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
TTCCTGATAAACCAAGCGCATTAAT.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAGAAGTTAAGTCC---------------------------CT.....................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

TTCCTGATAAACCAAGCGCATTAATGGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATATCCAAATTTACTATTGCTGAGGGTAATTATCACATTATAAATTCTAAAGCTAAAGCAATTGAGAAGTTAAGTCC---------------------------TAC------CGAA---CC------TGATCCTGTATCGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................ATTTGTGGCTAACACGGTAAGC..........................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
.......................ATGGCTGAAGCATTTGTGGC.......................................................................................................................................................................................................................................	20	1	2.00	2	1	1	0	0
............................................AACACGGTAAGCACTTTAAGT.................................................................................................................................................................................................................	21	1	2.00	2	1	1	0	0
..................................ATTTGTGGCTAACACGGT..............................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.............................................................................................................................................................................AATTCTAAAGCTAAAGCAATTGA..............................................................................	23	1	1.00	1	0	0	1	0
.....................................TGTGGCTAACACGGTAAGCACT.......................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...........................................................................................................ATATTTGAAATTCCCAAATT...................................................................................................................................................	20	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................TAAGTCC---------------------------TAC------CGAA---CC------TGATCCTG.......	24	1	1.00	1	1	0	0	0
......................AATGGCTGAAGCATTTGT..........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...................ATTAATGGCTGAAGCATTTGT..........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..CCTGATAAACCAAGCGCATTAAT.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.................................................................................................................................................................................CTAAAGCTAAAGCAATTGAGAA...........................................................................	22	1	1.00	1	0	0	1	0
.......................................................................................................................................................................ATTATAAATTCTAAAGCT.........................................................................................	18	1	1.00	1	0	0	1	0
TTCCTGATAAACCAAGCGCA..............................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
..................................................................................................................................................ATTGCTGAGGGTAATTAT..............................................................................................................	18	1	1.00	1	0	0	1	0
..................................................................................................................................................ATTGCTGAGGGTAATTATCAC...........................................................................................................	21	1	1.00	1	0	0	1	0
................CGCATTAATGGCTGAAGC................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...................................TTTGTGGCTAACACGGTAAGCACT.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
...........................................................................................................................................ATTTACTATTGCTGAGGGTAAT.................................................................................................................	22	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................AGTCC---------------------------TAC------CGAA---CC------TGATCC.........	20	1	1.00	1	1	0	0	0
.......................ATGGCTGAAGCATTTGTGGCT......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...................................................................................................................................................................................AAAGCTAAAGCAATTGAGA............................................................................	19	1	1.00	1	1	0	0	0

droYak3

TTCCTGATAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCCCCTGTGAACAAAATATTTGAAGTTCCCAAATTTGACATATCCAAACTTACTATTGCTGAGGGTAATTATCACATAATTAATTCTAAAACTAAAGCAGCTGAGCAGGTAAACCC---------------------------TAT------CGAA---CC------TGAACCTGTATTGCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................ATCACTAATATTGAGAA---ACTTTCCCC.................................................................................................................................................................................	26	1	10.00	10	0	1	0	0	0	0	0	0	0	0	9
............................................AACACGGTAAGCACTTTAAGT.................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................ATTGCTGAGGGTAATTATCA............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................TCACATAATTAATTCTAAAACTAAAGC....................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................TAATTGCTGAAGCATTTGTGGCT......................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TAACACGGTAAGCACTTTAA...................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................GAGAA---ACTTTCCCCTGTGAACA.........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATTCTAAAACTAAAGCAGCTG...............................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................TAAACCC---------------------------TAT------CGAA---CC------TGAAC..........	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................GGCTAACACGGTAAGCACT.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...................ATTAATTGCTGAAGCATTTGT..........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................CCC---------------------------TAT------CGAA---CC------TGAACCTGTATTGCC	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTAAAGCAGCTGAGCAGGTA.......................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................TATAATCACTAATATTGAGA..............................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGAGGGTAATTATCACATAATTAATTCT...............................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................ACTTTAAGTATAATCACTAATATT..................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................ATATTTGAAGTTCCCAAATT...................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATTCTAAAACTAAAGCAGCTGAGCAGG.........................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GAA---CC------TGAACCTGTATTGCC	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....GATAAACCAAGCGCATTAATTGCTGA...................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................AAAATATTTGAAGTTCCCA.......................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAAAGCAGCTGAGCAGGTAAACCC---------------------------TAT------..............................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAACCC---------------------------TAT------CGAA---CC------TGAACCT........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............AGCGCATTAATTGCTGAAGCATT.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................GTAAACCC---------------------------TAT------CGAA---CC------TGAACCT........	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GTTCCCAAATTTGACATATCC.........................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................ATTGCTGAAGCATTTGTGGC.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGCAGGTAAACCC---------------------------TAT------CGAA---CC------TGAACCT........	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................AAACTTACTATTGCTGAGGGTA...................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................AAAACTAAAGCAGCTGAGCA...........................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................TTGCTGAAGCATTTGTGGCT......................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................AATATTGAGAA---ACTTTCCCCTGT..............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............AGCGCATTAATTGCTGAAGCATTTGT..........................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TAAACCC---------------------------TAT------CGAA---CC------TGAACCTGT......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AAACTTACTATTGCTGAGGGTAA..................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................AACACGGTAAGCACTTTAAGTATAATCA..........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................ATTCTAAAACTAAAGCAGCTGAGCA...........................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................TATCCAAACTTACTATTGCTGAGGGT....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................AATTGCTGAAGCATTTGTGGC.......................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................TGAGAA---ACTTTCCCCTGTGAAC..........................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AA---CC------TGAACCTGTATTGCC	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......ATAAACCAAGCGCATTAATTGCTGAAGC................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................AATTGCTGAAGCATTTGTGGCT......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................AGCAGCTGAGCAGGTAAACC...................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAAAGCAGCTGAGCAGGT........................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................CGCATTAATTGCTGAAGCATT.............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TAACACGGTAAGCACTTTAAGT.................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................AATATTTGAAGTTCCCAAATTT..................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................AAAGCAGCTGAGCAGGTAAACCC---------------------------TAT------..............................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TACCTGATAAACCAAGCGCATTAATTGCTGAAGCATTTGTGGCTAACACGGTAAGCACTTTAAGTATAATCACTAATATTGAGAA---ACTTTCACCTTTAAACAAAATATTTGAAATTCCCAAATTTGACATCTCCAAACTTACTATTGCTGAGGGTAATTATCACATAATAAATTCTAAGTCTAAAGCAATTGAGCAGGTAAATCC---------------------------TAT------CGAA---CC------TGATCCTGTATCGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................ATCTCCAAACTTACTATTGCTGAGG......................................................................................................................	25	1	2.00	2	1	0	0	0	1	0	0
...................................................................................................................................ATCTCCAAACTTACTATTGCTGAGGGT....................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................AAATCC---------------------------TAT------CGAA---CC------TGATCCT........	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................AGTATAATCACTAATATTGAG...............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................GGCTAACACGGTAAGCACTTTAAGT.................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
............................................AACACGGTAAGCACTTTAAGTATA..............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................AAGTCTAAAGCAATTGAGCAGGTA.......................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................ATTATCACATAATAAATTCTAAGT...........................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.......................ATTGCTGAAGCATTTGTG.........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................CTTACTATTGCTGAGGGT....................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0
............................................................................................................................................................................................................ATCC---------------------------TAT------CGAA---CC------TGATCCTGTATC...	25	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................AATAAATTCTAAGTCTAAAGCA...................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................TAAATCC---------------------------TAT------CGAA---CC------TGATCCTG.......	24	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................AATCC---------------------------TAT------CGAA---CC------TGATCCTGTATCG..	27	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................ATCC---------------------------TAT------CGAA---CC------TGATCCTGT......	22	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................GCTGAGGGTAATTATCACATA........................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................TTACTATTGCTGAGGGTA...................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............AGCGCATTAATTGCTGAAGCATTTGTGGC.......................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................GGTAAATCC---------------------------TAT------CGAA---CC------TGATCCT........	25	1	1.00	1	1	0	0	0	0	0	0
...................ATTAATTGCTGAAGCATTTGT..........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................ATCC---------------------------TAT------CGAA---CC------TGATCCT........	20	1	1.00	1	1	0	0	0	0	0	0
.................GCATTAATTGCTGAAGCATT.............................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................AATAAATTCTAAGTCTAAA......................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................AAGTCTAAAGCAATTGAGCAGGTAAATC...................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.ACCTGATAAACCAAGCGCAT.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................ATTGCTGAAGCATTTGTGGCT......................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................GAGCAGGTAAATCC---------------------------TAT------CGAA---CC------T..............	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................ATTGAGCAGGTAAATCC---------------------------TAT------C.............................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................ATTGCTGAGGGTAATTATCAC...........................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................................TTTGTGGCTAACACGGTAAGC..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................CTCCAAACTTACTATTGCTGAG.......................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................CTAAAGCAATTGAGCAGGT........................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................GAA---CC------TGATCCTGTATCGCC	20	1	1.00	1	1	0	0	0	0	0	0

dps_1518

4_group3:2731552-2731680 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-5.7	-5.41	-5.3