ID:

dps_1489

 Coordinate:

4_group3:913542-913692 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.0 -4.6 -4.1

Flybase annnotation

CDS [Dpse\GA18821-cds]; exon [dpse_GLEANR_2296:2]; intron [Dpse\GA18821-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAACCGAAAGAAATTTGTCATCGTCATTGCCTCGCTTACAATTGTTCAAATAACCAGTGCCAGCGCTCGCCAGCACGATAACAGACACCGAAAAATCATTCCACTAATTGCTTTTCGACTGCATACGTAGTCAAAATAATACCAAATAAAAAAATAAGCTGTGATTTCGTAGACTTATTGATTTTTCCCTCGATTTGCAGGCTGGCAAAATGAAGAAGGAGAAAAAGGAGAAGCCGGCCGGTGCTGCCGG
***********************************************************...((....((..((((.................................))))...)).))********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M059
embryo
 M022
male body		 SRR902012
CNS imaginal disc
.................................................................................................CATTCCACTAATTGCTTTTCGACT.................................................................................................................................. 24 0 1 4.00 4 4 0 0 0 0
.............................................................................................................................................................................................................................GAAAAAGGAGAAGCCGGC............ 18 0 1 3.00 3 3 0 0 0 0
.........................................................................................................................................................................................................GCTGGCAAAATGAAGAAGGA.............................. 20 0 1 3.00 3 2 0 0 0 1
...............................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGCTGC... 25 0 1 2.00 2 2 0 0 0 0
..................................................................................................ATTCCACTAATTGCTTTTCGACT.................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0
................................................................................................................................................................................................................................AAAGGAGAAGCCGGCCGG......... 18 0 1 2.00 2 2 0 0 0 0
...........................................................GCCAGCGCTCGCCAGCACGAT........................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0
........................................................................................................................................................................................TTTCCCTCGATTTGCAGGCTGGC............................................ 23 0 1 2.00 2 2 0 0 0 0
..........................................................................................................................................ATTACCAAATAAAAAAATAAGCT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0
.....................................................AACAGTGCCAGCGCTCGCC................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................GATTTTTCCCTCGATTTGCAG.................................................. 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................AAAAATAAGCTGTGATTTCGTAGACTT.......................................................................... 27 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................ATTTTTCCCTCGATTTGCAGGC................................................ 22 0 1 1.00 1 1 0 0 0 0
.........................................................GTGCCAGCGCTCGCCAGCACG............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................GCTGGCAAAATGAAGAAGGAGA............................ 22 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................GCTGGCAAAATGAAGAAGGAG............................. 21 0 1 1.00 1 1 0 0 0 0
..............TTAGTCATCGTCTTTGCCTCG........................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................GAAGGGAGAGGCCGGCCGGTG....... 21 3 1 1.00 1 0 1 0 0 0
......................CGTCATTGCCTCGCTTACA.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGC...... 22 0 1 1.00 1 1 0 0 0 0
.............................................................................................................TGCTTTTCGACTGCATACGTAGT....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..................................................ATAACCAGTGCCAGCGCTCGCCAGC................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................ATATTACCAAATAAAAAAATAAGCT.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................ATTTCGTAGACTTATTGATT................................................................... 20 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................CGTAGACTTATTGATTTTTCCCTCGATT....................................................... 28 0 1 1.00 1 1 0 0 0 0
......................................................................................................CACTAATTGCTTTTCGACT.................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................AGACTTATTGATTTTTCCCTCGATTT...................................................... 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................GAAAAAGGAGAAGCCGGCC........... 19 0 1 1.00 1 0 0 1 0 0
..............................................................................................................GCTTTTCGACTGCATACGTA......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...........................................................GCCAGCGCTCGCCAGCAC.............................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
...............................................................................................ATCATTCCACTAATTGCTTTTCAACT.................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................ATAAAAAAATAAGCTGTGATTTCGTAG.............................................................................. 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................TTGCTTTTCGACTGCATACGT.......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................GAAAAAGGAGAAGCCGGCCGGTGCTGCC.. 28 0 1 1.00 1 0 0 1 0 0
.............................................................................................AAATCATTCCACTAATTGCTTTTCGACT.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
................................................................................................TCATTCCACTAATTGCTTTTCGACT.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................GGAGAAGCCGGCCGGTGCT..... 19 0 1 1.00 1 1 0 0 0 0
................................................................CGCTCGCCAGCACGATAACA....................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................CGTAGACTTATTGATTTTTCCCT............................................................ 23 0 1 1.00 1 1 0 0 0 0
............................TGCCTCGCTTACAATTGTTCAA......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...........................................................................ACGATAACAGACACCGAAAAAT.......................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................AGACTTATTGATTTTTCCCTC........................................................... 21 0 1 1.00 1 1 0 0 0 0
.................................................................GCTCGCCAGCACGATAACAGACACCGA............................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGCTG.... 24 0 1 1.00 1 1 0 0 0 0
....................................................AACCAGTGCCAGCGCTCGCCAGC................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................................AGGAGAAGCCGGCCGGTG....... 18 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................ATTTCGTAGACTTATTGATTT.................................................................. 21 0 1 1.00 1 1 0 0 0 0
...........................................................GCCAGCGCTCGCCAGCACGATAACA....................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................AGAAAAAGGAGAAGCCGGCCG.......... 21 0 1 1.00 1 1 0 0 0 0
................................................................................................TCATTCCACTAATTGCTTTTCGACTG................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................GCTGTGATTTCGTAGACT........................................................................... 18 0 1 1.00 1 0 0 0 1 0
...........................................................................ACGATAACAGACACCGAAAA............................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0
....................ATCGTCATTGCCTCGCTTAC................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................................AGAAGCCGGCCGGTGCTGCC.. 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................ATCATTCCACTAATTGCTTTTCGACT.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................TTCCCTCGATTTGCAGGCTG.............................................. 20 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................GTGATTTCGTAGACTTATT....................................................................... 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................GAAGCCGGCCGGTGCTGCC.. 19 0 1 1.00 1 1 0 0 0 0
.............................................................................GATAACAGACACCGAAAAAT.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................AATGAAGAAGGAGAAAAAGGA..................... 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................ATAAGCTGTGATTTCGTAGACTT.......................................................................... 23 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................AGGCTGGCAAAATGAAGAAGGA.............................. 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................TTTTCCCTCGATTTGCAGGCT............................................... 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................GGAGAAAAAGGAGAAGCCGGCCGGT........ 25 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGCT..... 23 0 1 1.00 1 1 0 0 0 0
................................................................................................GCATTCCACTAATTGCTTTTCGACT.................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................GTGATTTCGTAGACTTATTGATT................................................................... 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................CCCTCGATTTGCAGGCTGGC............................................ 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................AATATGAAAAAGGAGAAAAAGGAGA................... 25 2 1 1.00 1 1 0 0 0 0
...........................................................GCCAGCGCTCGCCAGCACGATAACAGA..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................ATGAAAAAGGAGAAAAAGGAGAA.................. 23 1 1 1.00 1 1 0 0 0 0
.........................................................GTGCCAGCGCTCGCCAGC................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
...............................................................................................ATCATTCCACTAATTGCTTTTC...................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................TGATTTCGTAGACTTATTGATT................................................................... 22 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................AATATGAAAAAGGAGAAAAAGGA..................... 23 2 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................AAGGAGAAAAAGGAGAAGCCGGCCGG......... 26 0 1 1.00 1 1 0 0 0 0
...........................................................................ACGATAACAGACACCGAAA............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................AATGAAGAAGGAGAAAAAGGAGAAGCC............... 27 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................AAGTAGGAGAAAAAGGAGAAGC................ 22 1 2 0.50 1 0 0 1 0 0
..................................................................................................................................................................................................................ATGAAAAAGGAGAAAAAGGA..................... 20 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................GAAGAAGGAGAAACAGGAGA................... 20 1 5 0.20 1 1 0 0 0 0
.....................................................................GCCAGCGCGATGACAGGCAC.................................................................................................................................................................. 20 3 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................................................................GAAAAAGGAGAAAAAGGAG.................... 19 1 5 0.20 1 1 0 0 0 0
.......................................................................................................................................................................................................................GAAGGAGAAACAGGAGAAA................. 19 2 20 0.10 2 2 0 0 0 0
....................................................................................................................................................................................................................GAAGAAGGAGAAACAGGAAAA.................. 21 2 13 0.08 1 1 0 0 0 0

Anti-sense strand reads

TCTTGGCTTTCTTTAAACAGTAGCAGTAACGGAGCGAATGTTAACAAGTTTATTGGTCACGGTCGCGAGCGGTCGTGCTATTGTCTGTGGCTTTTTAGTAAGGTGATTAACGAAAAGCTGACGTATGCATCAGTTTTATTATGGTTTATTTTTTTATTCGACACTAAAGCATCTGAATAACTAAAAAGGGAGCTAAACGTCCGACCGTTTTACTTCTTCCTCTTTTTCCTCTTCGGCCGGCCACGACGGCC
**********************************************************************************************************************************...((....((..((((.................................))))...)).))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
........................AGTAACGGAGCGAATGTTAA............................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
......................................................GGTTACGGTCGCGTGCGG................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0
...........................................................CGGTCGCGATCGGTCTTG.............................................................................................................................................................................. 18 2 11 0.09 1 1 0 0
...............................................................................................CAGTAAGGTGATAAGCGAA......................................................................................................................................... 19 3 20 0.05 1 0 0 1
.............................................................................................................................................................................................................CGTTTGACTTCTCCCTGTTT.......................... 20 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:913492-913742 + dps_1489 AGA-----ACCGAAAGAA------------ATTT-GTCATCGTCATTG-------CCTC--GC-TTACAATTGTTCAAATAACCAGTGCCAGCGCTCGCCAGC-------------------------ACGATAACAGACACCGAAAA--ATCATTCCA-CTAATTGCTTT-TCGA-CTG---------CATACGTAGTCAAAATA-----ATACCAA---A-------------------------TAAAAAAATAAGCTGT---GATTTCGTAG-------ACTTATTGATTTTTC-----------CCTCGA------TTTGCAGGCTGGCAAAATGAAGAAGGAGAAAAAGGAGAAGCCGGCCGGTGCTGCCGG
droPer2 scaffold_1:2393186-2393436 + dpe_533 AGA-----GCCGAAAGAA------------ATTT-GTCATCGTCATTG-------CCTC--GC-TTACAATTGTTCAAATAAACAGTGCCAGCGCTCGCCAGC-------------------------ACGATAACAGACACCGAAAA--ATCATTCCA-CTAATTGCTTT-TCGA-CTG---------CATACGTAGTCAAAATA-----TTACCAA---A-------------------------TAAAAAAATAAGCTGT---GATTTCGTAG-------ACTTATTGATTTTTC-----------CCTCGA------TTTGCAGGCTGGCAAAATGAAGAAGGAGAAAAAGGAGAAGCCGGCCGGTGCTGCCGG
droWil2 scf2_1100000004851:48235-48458 + ACC-----ACA-AAAGTA------------TTTTGGTTATTGCTTTTG-------TTTC--GT-TAACAATTGTTTAAACAACTACA----AC----------A-G------------ACAGCAA---TTGATAGTAGATAACGAAAAAGAGCATTTAAAGCAAT--------TGC-TTG---------TCTACGTAGGCAAAAAA-----A-AACAC-----------------------------TAAA-ATTTAAG-----------------------TTTTTATTGATTTTCCAT------CC-TTTAAC------CTTGTAGGCATCCAAAATGAAGAAGGAGAA------GAAACCTGCTGCTGGCGGCGG
droVir3 scaffold_12963:15930916-15931188 + dvi_12136 AGA-----ACCAAAAACA-----------------GTTATTCTTATTGTCATTTGCTTTTTGG-TGACAACTGTGTAAACGACAAA-----------------ACA------------AAAACAG---T--------GACACCGAAAA--TTCATTACAAATAATTGCTTTCTTAA-CTGTGTACGTTGCCCACGTAGCTAAAAGAAGTTTGATACACTTTCTGATTTATATGATGTATATTTAT---TAC----------GCCTT------GGCG-------ATTTATTGATTTTTT------TTCA-TACACA------ATTGCAGGCAGCTAAAATGAAGAAGGAGAAAAAGGAGAAGCCAGCTGCAGGCGGCGG
droMoj3 scaffold_6500:5374581-5374851 + AGA-----GCCGAAAACACTGTTA------T--T-GTATTTTTTGTTT-------TCGT--GTGTGACAACTGTGCAAACGACAAA-----------------ACACGAAAAAAGAAAAAAACA---------------CACAAAAAT--ATCATTAAATATAATTGCTTTCCTAA-CTGTGTATGTTGTCTACGTAGCATCAAAG--AT-AAACAAT---TTTATTTTT----------TTTTTTTCGAAT--TTT----GTATT------G--------AATTTTATTGATTA-------ATTTTTTGTGCGC------ATTGCAGGCGGCTAAAATGAAGAAGGAGAAAAAGGAAAAGCCAGCTGCAGGCGGCGG
droGri2 scaffold_15252:13359103-13359371 + AAA-----GCAAAGAGCAAACTTTCCGTTTTCTT-TTGGTGGTCGTCT------GCTT---GTCTGACAACTGTGTCAACCGCAACA----GC----------A-AACAACAAAA---ACA--AT---ACAAAAGCATACACCGAAAA--TTCATTAATTACAATTGCTAA-TTAA-ACGTGTACGTTGCTTGCGTAGCTAACGAA-GAT-A-ATGAT---TTAACT--------------------TTTC-TTTTCTGCTGCATT------GACAAATGAGTTT---------------------TC-ATTGAT------TTTGCAGGCTGCCAAGATGAAGAAGGAAAA------GAAACCCGCTGGAGCCGGCGG
droAna3 scaffold_12943:2529884-2530093 - AGT-----GC--------------------------------CCATTG-------CTTT--TC-TTCCAATTGTTCAAACAACAAG-----------------AAA----------------CAGTCAACGAAACCAGATACCGAAAA--ATCATTTGA-CTGATTGCCAC-TCGACTTG---------CATACGTAGCAGAAATT-----GTCCCAT---T-------------------------TCAC-ATTCGAA------------------------TATTATTGATTTTTT-------TCA-CATCGA------CTTTCAGGCAGCCAAGATGAAGAAGGAAAAAAAAGAAAAGCCTGCCG---GTGGAGG
droBip1 scf7180000396728:802584-802797 + ---------CCGAAAGTG-----------------------CCCACTG-------CTTT--CT-ATCCAATTGTTCAAATAGCAAG-----------------AAA----------------CAGTCAACGAAACCAGATACCGAAAA--ATCATTTGA-CTGATTGCCAC-TCGACTTG---------CATACGTAGCAGAAATT-----GCCCCAT---T-------------------------CGAA-ATTCAAA------------------------TATTATTGATTTTTT--------CA-CATCGA------TTTTCAGGCAGCCAAGATGAAGAAGGAGAAAAAGGAAAAACCGGCCG---GTGCAGG
droKik1 scf7180000302408:859552-859760 + GGT-----GCCGAAAAAC------------TCAT-GTATCTCTCAGTG-------CTGT--GT-CCCCAATTGTTTAAACAGTCAG-----------------AA----------------CCAG---TCG---GGAGATAGCGAAAGACGGCA---------------GACATTC-GTG---------CATACGTAGCATAAAAT-----C-TTTAC---C-------------------------TAAA-AC-TAAA------------------------ACTTATTGATTTTTC-------TCA-CATGGA------TTTGCAGGCGGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCTG---GCGCCAG
droFic1 scf7180000453936:50272-50501 - AGC-----GCCGAAAGCG------------TCTT-GTTATTCTCATCG-------CTTTTTGC-CCCCAATTGTTCAAACACCAAG-----------------AAAA--------AGAACATCAG---TCGAAAGTAGATACCGAAAA-AATCGTT-------------TACCTAA-TTG---------CATACGTAGCAGAAATT-----CAGCAAC---T-------------------------TTAC-ATTTCAG------------------------TGTTATTGATTTTTT--------TC-AATGGATTTGTATTTGCAGGCGGCCAAAATGAAGAAGGAGAAAAAGGAAAAACCGGCCG---GCGGTGG
droEle1 scf7180000491028:3059059-3059282 - AAAAATACTTTAAAAGCA------------TCTT-GTCGTTTCCATTG-------CTTTTAGT-CCCCAATTGTTCAAACACCAAG-----------------A--------------ATATCAG---TCGAAAGTAGATACCGAAAA-AAGCGTT-------------TACTTAA-TTG---------CATACGTAGCAGGAATT----CCAGCCAC---T-------------------------TTAA-ATTTTCA------------------------TCATATTGATTTTTT--------CC-CATGGA------TTTGCAGGCGGCCAAAATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GTGGCGC
droRho1 scf7180000761302:24404-24617 - AAA-AC--GCCGAAAA-G------------TCTT-GTCATTACCATTG-------CTTT--GT-C-CCAATTGTTTAAACACCAAG-----------------A--------------ACATCAG---TCGAAAGTAGATACCGTAAA-AAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCAGTAATT-----CAGACAC---T-------------------------TAAA-ATTTCCG------------------------TTTTATTGATTTTTT-----------CATGGA------TTTTCAGGCGACCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GCGCTGG
droBia1 scf7180000302422:912086-912305 - ACC-----GCCGAAAGCG------------TCTT-GTTGTTCCCATCG-------CCTT--GT-C-CCAATTGTTCGAACACCAAG-----------------AACA--------TCGCCATCAG---TCGAAAGCAGATACCGAAAA-AAGCGCT-------------TGTCTAA-TTG---------CATACGTAGCAGAAATT-----TAGCTTC---T-------------------------TGGA-ATTTCCG------------------------TTTTATTGATTTTTT---------C-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAGAAGGAGAAGCCGGCCG---GAGGTGG
droTak1 scf7180000415863:119235-119467 - AGC-----GCCGAAAGCG------------CCTT-GTTACTCTCATTG-------CCTT--GT-CCCCAATTGTTCAAACAACAAG-----------------AAAACAAGAAAGACATCAACAG---TCGAAAGTAGATACCGAATAAAAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCAGAATTT----TGAGCCCCG--T-------------------------CGGA-ATTTCCG------------------------TTTTATTGATTTTTT--------CC-AATGGA------TTTGCAGGCTTCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GAGGTGG
droEug1 scf7180000409122:487758-487981 + AGC-----GCCGAAAGCG------------TCTT-GTTATTCTCTTTG-------CCTT--GT-CCCCAATTGTTTAAACATTAGG-----------------AAAA--------AAAACATCAG---TCGAAAGTTGATACCGAAAAAGAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCAAAATTT-----AACCTAC---C-------------------------TGAA-ATTTCCG------------------------TTTTATTGATTTTTT-------CAA-AATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GCGGTGG
dm3 chr2L:12104304-12104538 + AGC-----ACCGAAAACATAGCA-------CCGA-AAAGTGCTCATTG-------CCAT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAAAAAGAGCATT-------------TGTCTAA-TTG---------CATACGTAGCACACTTG-----TGGCCAC---T-------------------------TGAATATCTCCG----------------------GTTTATATTGATTTTTAACCTATTTCC-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGTGG
droSim2 2l:11765149-11765383 + dsi_14811 AGC-----ACTCACAACAAGGTG-------CCGA-AAAGTGCTCATTG-------CCAT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAAAAAGAGCGTT-------------TGTCTAA-TTG---------CATACGTAGCACACTTG-----TGGCCAC---T-------------------------TGAATATCTCTG----------------------ATTTGTATTGATTTTTAACCTTTTTCC-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGTGG
droSec2 scaffold_10446:1072-1306 + AGC-----ACTCACAACAAGGCG-------CCGA-AAAGTGCTCATTG-------CCAT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAAAAAGAGCGTT-------------TGTCTAA-TTG---------CATACGTAGCACACTTG-----TGGCCAC---T-------------------------TGAATATCTCTG----------------------ATTTTTATTGATTTTTAACCTATTTCC-GATGGA------TTTACAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGTGG
droYak3 2L:8521703-8521933 + AGC-----GCCGAAAACG------------TCTT-GTTATTCCCATTG-------CCGT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAACAAGAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCACATTT------TGGCAAA---T-------------------------TGAATGTATTAGTT--------------------GTTTTTATTGATTTTTAACCTATTTCC-TATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGGGAAAAAGGAAAAGCCATCCG---GCGGTGG
droEre2 scaffold_4929:13309176-13309408 - AGA-----GTCGAAAACG------------TCTT-GTTATTCTCATTG-------CCGT--GT-CCCCAATTGTTTAAACAGTAAG-----------------AAA------------ACATCAG---TCGAAAGTTGAAACCTGAGAAGAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCACACTT------TGGCCAA---T-------------------------TGAAAATTTTCGTTTT---TT---------------TTTTATTGATTTTTAACCTTTTTCT-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGCGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGA-----ACCGAAAGAA------------ATTT-GTCATCGTCATTG-------CCTC--GC-TTACAATTGTTCAAATAACCAGTGCCAGCGCTCGCCAGC-------------------------ACGATAACAGACACCGAAAA--ATCATTCCA-CTAATTGCTTT-TCGA-CTG---------CATACGTAGTCAAAATA-----ATACCAA---A-------------------------TAAAAAAATAAGCTGT---GATTTCGTAG-------ACTTATTGATTTTTC-----------CCTCGA------TTTGCAGGCTGGCAAAATGAAGAAGGAGAAAAAGGAGAAGCCGGCCGGTGCTGCCGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................CATTCCA-CTAATTGCTTT-TCGA-CT.......................................................................................................................................................................................................2414.0040400000000
............................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAGAAGCCGGC............1813.0030300000000
........................................................................................................................................................................................................................................................................................................................................GCTGGCAAAATGAAGAAGGA..............................2013.0030200000001
..............................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGCTGC...2512.0020200000000
.........................................................................................................................................................ATTCCA-CTAATTGCTTT-TCGA-CT.......................................................................................................................................................................................................2312.0020200000000
...............................................................................................................................................................................................................................................................................................................................................................AAAGGAGAAGCCGGCCGG.........1812.0020200000000
.......................................................................................GCCAGCGCTCGCCAGC-------------------------ACGAT.....................................................................................................................................................................................................................................................2112.0020100001000
......................................................................................................................................................................................................................................................................................................TTTC-----------CCTCGA------TTTGCAGGCTGGC............................................2312.0020200000000
..................................................................................................................................................................................................................................................................................................GATTTTTC-----------CCTCGA------TTTGCAG..................................................2111.0010100000000
..........................................................................................................................................................................................................................................................AAAAATAAGCTGT---GATTTCGTAG-------ACTT...........................................................................................2711.0010100000000
...................................................................................................................................................................................................................................................................................................ATTTTTC-----------CCTCGA------TTTGCAGGC................................................2211.0010100000000
.....................................................................................GTGCCAGCGCTCGCCAGC-------------------------ACG.......................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................GCTGGCAAAATGAAGAAGGAGA............................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................GCTGGCAAAATGAAGAAGGAG.............................2111.0010100000000
........................................CGTCATTG-------CCTC--GC-TTACA.....................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGC......2211.0010100000000
.....................................................................................................................................................................TGCTTT-TCGA-CTG---------CATACGTAGT...................................................................................................................................................................................2311.0010100000000
..............................................................................ATAACCAGTGCCAGCGCTCGCCAGC-------------------------..........................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................ATTTCGTAG-------ACTTATTGATT....................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................CGTAG-------ACTTATTGATTTTTC-----------CCTCGA------TT.......................................................2811.0010100000000
.............................................................................................................................................................CA-CTAATTGCTTT-TCGA-CT.......................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................AG-------ACTTATTGATTTTTC-----------CCTCGA------TTT......................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAGAAGCCGGCC...........1911.0010010000000
......................................................................................................................................................................GCTTT-TCGA-CTG---------CATACGTA.....................................................................................................................................................................................2011.0010100000000
.......................................................................................GCCAGCGCTCGCCAGC-------------------------AC........................................................................................................................................................................................................................................................1811.0010100000000
.............................................................................................................................................................................................................................A-------------------------TAAAAAAATAAGCTGT---GATTTCGTAG-------...............................................................................................2711.0010100000000
....................................................................................................................................................................TTGCTTT-TCGA-CTG---------CATACGT......................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAGAAGCCGGCCGGTGCTGCC..2811.0010010000000
..................................................................................................................................................AA--ATCATTCCA-CTAATTGCTTT-TCGA-CT.......................................................................................................................................................................................................2811.0010100000000
.......................................................................................................................................................TCATTCCA-CTAATTGCTTT-TCGA-CT.......................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................GGAGAAGCCGGCCGGTGCT.....1911.0010100000000
............................................................................................CGCTCGCCAGC-------------------------ACGATAACA.................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................CGTAG-------ACTTATTGATTTTTC-----------CCT..................................................................2311.0010100000000
..............................................TG-------CCTC--GC-TTACAATTGTTCAA............................................................................................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................................ACGATAACAGACACCGAAAA--AT..................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................AG-------ACTTATTGATTTTTC-----------CCTC.................................................................2111.0010100000000
.............................................................................................GCTCGCCAGC-------------------------ACGATAACAGACACCGA.........................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGCTG....2411.0010100000000
................................................................................AACCAGTGCCAGCGCTCGCCAGC-------------------------..........................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................AGGAGAAGCCGGCCGGTG.......1811.0010100000000
...........................................................................................................................................................................................................................................................................ATTTCGTAG-------ACTTATTGATTT...................................................................................2111.0010100000000
.......................................................................................GCCAGCGCTCGCCAGC-------------------------ACGATAACA.................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................AGAAAAAGGAGAAGCCGGCCG..........2111.0010100000000
.......................................................................................................................................................TCATTCCA-CTAATTGCTTT-TCGA-CTG---------.............................................................................................................................................................................................2611.0010100000000
..................................................................................................................................................................................................................................................................GCTGT---GATTTCGTAG-------ACT............................................................................................1811.0011000000000
................................................................................................................................ACGATAACAGACACCGAAAA--....................................................................................................................................................................................................................................2011.0010000001000
......................................ATCGTCATTG-------CCTC--GC-TTAC......................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................AGAAGCCGGCCGGTGCTGCC..2011.0010100000000
......................................................................................................................................................ATCATTCCA-CTAATTGCTTT-TCGA-CT.......................................................................................................................................................................................................2611.0010100000000
.......................................................................................................................................................................................................................................................................................................TTC-----------CCTCGA------TTTGCAGGCTG..............................................2011.0010100000000
.....................................................................................................................................................................................................................................................................GT---GATTTCGTAG-------ACTTATT........................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................GAAGCCGGCCGGTGCTGCC..1911.0010100000000
..................................................................................................................................GATAACAGACACCGAAAA--AT..................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................AATGAAGAAGGAGAAAAAGGA.....................2111.0010100000000
..............................................................................................................................................................................................................................................................ATAAGCTGT---GATTTCGTAG-------ACTT...........................................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................AGGCTGGCAAAATGAAGAAGGA..............................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................TTTTC-----------CCTCGA------TTTGCAGGCT...............................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................GGAGAAAAAGGAGAAGCCGGCCGGT........2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAAGCCGGCCGGTGCT.....2311.0010100000000
.....................................................................................................................................................................................................................................................................GT---GATTTCGTAG-------ACTTATTGATT....................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................C-----------CCTCGA------TTTGCAGGCTGGC............................................2011.0010100000000
.......................................................................................GCCAGCGCTCGCCAGC-------------------------ACGATAACAGA...............................................................................................................................................................................................................................................2711.0010100000000
.....................................................................................GTGCCAGCGCTCGCCAGC-------------------------..........................................................................................................................................................................................................................................................1811.0010100000000
......................................................................................................................................................ATCATTCCA-CTAATTGCTTT-TC............................................................................................................................................................................................................2211.0010100000000
......................................................................................................................................................................................................................................................................T---GATTTCGTAG-------ACTTATTGATT....................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................AAGGAGAAAAAGGAGAAGCCGGCCGG.........2611.0010100000000
................................................................................................................................ACGATAACAGACACCGAAA.......................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................AATGAAGAAGGAGAAAAAGGAGAAGCC...............2711.0010100000000
droPer2
AGA-----GCCGAAAGAA------------ATTT-GTCATCGTCATTG-------CCTC--GC-TTACAATTGTTCAAATAAACAGTGCCAGCGCTCGCCAGC-------------------------ACGATAACAGACACCGAAAA--ATCATTCCA-CTAATTGCTTT-TCGA-CTG---------CATACGTAGTCAAAATA-----TTACCAA---A-------------------------TAAAAAAATAAGCTGT---GATTTCGTAG-------ACTTATTGATTTTTC-----------CCTCGA------TTTGCAGGCTGGCAAAATGAAGAAGGAGAAAAAGGAGAAGCCGGCCGGTGCTGCCGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................GCAAAATGAAGAAGGAGAAAAAGGA.....................2514.004300001
..............................................................................................................................................................................................................................................................ATAAGCTGT---GATTTCGTAG-------ACTT...........................................................................................2313.003300000
...........................................................................................................................................................................................................................................................................ATTTCGTAG-------ACTTATTGATTTTTC-----------CCT..................................................................2712.002200000
..............................................................................................................................................................A-CTAATTGCTTT-TCGA-CTG---------C............................................................................................................................................................................................2012.002200000
...........GAAAGAA------------ATTT-GTCATCGTC..............................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................TT-TCGA-CTG---------CATACGTAGT...................................................................................................................................................................................1911.001001000
.............................................................................................................................................................................................................................................................AATAAGCTGT---GATTTCGTAG-------ACT............................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................AGAAAAAGGAGAAGCCGGC............1911.001010000
................................................................................................................................................................................................................................................................................GTAG-------ACTTATTGATTTTTC-----------CCC..................................................................2211.001100000
.................................................................................................................................................................................................................................................................................................................................................................AGGAGAAGCCGGCCGGTGCTGCC..2311.001001000
.........................................................................................................................................................................................................................................................................................................................................................GGAGAAAAAGGAGAAGCCGGCCGGTG.......2611.001100000
..........................................................................................................................................................................................................................................................................GATTTCGTAG-------ACTTATTGATT....................................................................................2111.001001000
.....................................................................................................................................................................................................................................................................................................................................................................GAAGCCGGCCGGTGCTGCC..1911.001001000
................................................................................................................................................................................................................................................................................GTAG-------ACTTATTGATTTTTC-----------CCT..................................................................2211.001100000
...............................TTT-GTCATCGTCATTG-------CCT................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................GCTTT-TCGA-CTG---------CATACGTAGT...................................................................................................................................................................................2211.001001000
...............................TTT-GTCATCGTCATTG-------CCG................................................................................................................................................................................................................................................................................................................................1920.501100000
droWil2
ACC-----ACA-AAAGTA------------TTTTGGTTATTGCTTTTG-------TTTC--GT-TAACAATTGTTTAAACAACTACA----AC----------A-G------------ACAGCAA---TTGATAGTAGATAACGAAAAAGAGCATTTAAAGCAAT--------TGC-TTG---------TCTACGTAGGCAAAAAA-----A-AACAC-----------------------------TAAA-ATTTAAG-----------------------TTTTTATTGATTTTCCAT------CC-TTTAAC------CTTGTAGGCATCCAAAATGAAGAAGGAGAA------GAAACCTGCTGCTGGCGGCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................ATCCAAAATGAAGAAGGAGA............................2011.00100010
..............................................................................................................................................................................................................................................................................................................................................................A------GAAACCTGCTGCTGGCGG...1911.00100010
...................................................................................................................................................................................G---------TCTACGTAGGCAAAAAA-----A-AAC..................................................................................................................................................................2211.00100100
...................................................................................................................................ATAGTAGATAACGAAAAAGA...................................................................................................................................................................................................................................2011.00100010
.........................................................................................................................................................................................................................................................................................................................................................GGAGAA------GAAACCTGCTGCTGGC.....2211.00101000
.............................................................................................................................................................................................................................................................................................................................................CAAAATGAAGAAGGAGAA------GA...................2011.00100010
..................................................................................................................................................................................................................................................................................................................................................TGAAGAAGGAGAA------GAAACCTGC............2211.00100001
.......................................................................................................................................................................................................................................................................................................................................GGCATCCAAAATGAAGAAGG...............................2011.00100010
............................................................................................................................................................................................................................................................................................................................................CCAAAATGAAGAAGGAGAA------GAAACC...............2511.00100100
..............................................................................................................................................................................................................................................................................................................................................AAAATGAAGAAGGAGAA------GA...................1911.00100100
droVir3
AGA-----ACCAAAAACA-----------------GTTATTCTTATTGTCATTTGCTTTTTGG-TGACAACTGTGTAAACGACAAA-----------------ACA------------AAAACAG---T--------GACACCGAAAA--TTCATTACAAATAATTGCTTTCTTAA-CTGTGTACGTTGCCCACGTAGCTAAAAGAAGTTTGATACACTTTCTGATTTATATGATGTATATTTAT---TAC----------GCCTT------GGCG-------ATTTATTGATTTTTT------TTCA-TACACA------ATTGCAGGCAGCTAAAATGAAGAAGGAGAAAAAGGAGAAGCCAGCTGCAGGCGGCGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAGAAGCCAGC............1812.002000000000000000000000000000002000000000000000000000000000000000
........................................................................................................CA------------AAAACAG---T--------GACACCGAA........................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................GACAACTGTGTAAACGACAA.....................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................AA--TTCATTACAAATAATTGCT.................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
..............AACA-----------------GTTATTCTTATTGTCAT......................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................TTTCTTAA-CTGTGTACGTTGC............................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GAAGAAGGAGAAAAAGGAGAAGCC...............2411.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
AGA-----GCCGAAAACACTGTTA------T--T-GTATTTTTTGTTT-------TCGT--GTGTGACAACTGTGCAAACGACAAA-----------------ACACGAAAAAAGAAAAAAACA---------------CACAAAAAT--ATCATTAAATATAATTGCTTTCCTAA-CTGTGTATGTTGTCTACGTAGCATCAAAG--AT-AAACAAT---TTTATTTTT----------TTTTTTTCGAAT--TTT----GTATT------G--------AATTTTATTGATTA-------ATTTTTTGTGCGC------ATTGCAGGCGGCTAAAATGAAGAAGGAGAAAAAGGAAAAGCCAGCTGCAGGCGGCGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................CAACTGTGCAAACGACAAA-----------------ACACGAAA...........................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................................................................................GGAAAAGCCAGCTGCAGGCG....2011.001100000
droGri2
AAA-----GCAAAGAGCAAACTTTCCGTTTTCTT-TTGGTGGTCGTCT------GCTT---GTCTGACAACTGTGTCAACCGCAACA----GC----------A-AACAACAAAA---ACA--AT---ACAAAAGCATACACCGAAAA--TTCATTAATTACAATTGCTAA-TTAA-ACGTGTACGTTGCTTGCGTAGCTAACGAA-GAT-A-ATGAT---TTAACT--------------------TTTC-TTTTCTGCTGCATT------GACAAATGAGTTT---------------------TC-ATTGAT------TTTGCAGGCTGCCAAGATGAAGAAGGAAAA------GAAACCCGCTGGAGCCGGCGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................CGTCT------GCTT---GTCTGACAACTGTGTC.............................................................................................................................................................................................................................................................................................................2511.00110
..............................................................................................................................................................................................................................................................................................................................................AAGATGAAGAAGGAAAA------GA...................1911.00110
droAna3
AGT-----GC--------------------------------CCATTG-------CTTT--TC-TTCCAATTGTTCAAACAACAAG-----------------AAA----------------CAGTCAACGAAACCAGATACCGAAAA--ATCATTTGA-CTGATTGCCAC-TCGACTTG---------CATACGTAGCAGAAATT-----GTCCCAT---T-------------------------TCAC-ATTCGAA------------------------TATTATTGATTTTTT-------TCA-CATCGA------CTTTCAGGCAGCCAAGATGAAGAAGGAAAAAAAAGAAAAGCCTGCCG---GTGGAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................GGCAGCCAAGATGAAGAAGGAAAAAA.........................2612.002000011
.....................................................................................................................................................................................................................................................................................................................................................AGAAGGAAAAAAAAGAAAA..................1911.001000100
.....................................................................................................................................................................................................................................................................................................................................CAGGCAGCCAAGATGAAG...................................1811.001100000
...................................................................................................................................................................................................................................................................................................................................................................GAAAAGCCTGCCG---GTGGAG.1911.001000010
.....................................................................................................................................................................................................................................................................................................................................................AGAAGGAAAAAAAAGAAAAGCC...............2211.001010000
................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAGCCTGCCG---GC.....1820.501010000
droBip1
---------CCGAAAGTG-----------------------CCCACTG-------CTTT--CT-ATCCAATTGTTCAAATAGCAAG-----------------AAA----------------CAGTCAACGAAACCAGATACCGAAAA--ATCATTTGA-CTGATTGCCAC-TCGACTTG---------CATACGTAGCAGAAATT-----GCCCCAT---T-------------------------CGAA-ATTCAAA------------------------TATTATTGATTTTTT--------CA-CATCGA------TTTTCAGGCAGCCAAGATGAAGAAGGAGAAAAAGGAAAAACCGGCCG---GTGCAGGSizeHit CountTotal NormTotal
No Reads
droKik1
GGT-----GCCGAAAAAC------------TCAT-GTATCTCTCAGTG-------CTGT--GT-CCCCAATTGTTTAAACAGTCAG-----------------AA----------------CCAG---TCG---GGAGATAGCGAAAGACGGCA---------------GACATTC-GTG---------CATACGTAGCATAAAAT-----C-TTTAC---C-------------------------TAAA-AC-TAAA------------------------ACTTATTGATTTTTC-------TCA-CATGGA------TTTGCAGGCGGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCTG---GCGCCAGSizeHit CountTotal NormTotal
No Reads
droFic1
AGC-----GCCGAAAGCG------------TCTT-GTTATTCTCATCG-------CTTTTTGC-CCCCAATTGTTCAAACACCAAG-----------------AAAA--------AGAACATCAG---TCGAAAGTAGATACCGAAAA-AATCGTT-------------TACCTAA-TTG---------CATACGTAGCAGAAATT-----CAGCAAC---T-------------------------TTAC-ATTTCAG------------------------TGTTATTGATTTTTT--------TC-AATGGATTTGTATTTGCAGGCGGCCAAAATGAAGAAGGAGAAAAAGGAAAAACCGGCCG---GCGGTGGSizeHit CountTotal NormTotal
No Reads
droEle1
AAAAATACTTTAAAAGCA------------TCTT-GTCGTTTCCATTG-------CTTTTAGT-CCCCAATTGTTCAAACACCAAG-----------------A--------------ATATCAG---TCGAAAGTAGATACCGAAAA-AAGCGTT-------------TACTTAA-TTG---------CATACGTAGCAGGAATT----CCAGCCAC---T-------------------------TTAA-ATTTTCA------------------------TCATATTGATTTTTT--------CC-CATGGA------TTTGCAGGCGGCCAAAATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GTGGCGCSizeHit CountTotal NormTotal
No Reads
droRho1
AAA-AC--GCCGAAAA-G------------TCTT-GTCATTACCATTG-------CTTT--GT-C-CCAATTGTTTAAACACCAAG-----------------A--------------ACATCAG---TCGAAAGTAGATACCGTAAA-AAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCAGTAATT-----CAGACAC---T-------------------------TAAA-ATTTCCG------------------------TTTTATTGATTTTTT-----------CATGGA------TTTTCAGGCGACCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GCGCTGGSizeHit CountTotal NormTotal
No Reads
droBia1
ACC-----GCCGAAAGCG------------TCTT-GTTGTTCCCATCG-------CCTT--GT-C-CCAATTGTTCGAACACCAAG-----------------AACA--------TCGCCATCAG---TCGAAAGCAGATACCGAAAA-AAGCGCT-------------TGTCTAA-TTG---------CATACGTAGCAGAAATT-----TAGCTTC---T-------------------------TGGA-ATTTCCG------------------------TTTTATTGATTTTTT---------C-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAGAAGGAGAAGCCGGCCG---GAGGTGGSizeHit CountTotal NormTotal
No Reads
droTak1
AGC-----GCCGAAAGCG------------CCTT-GTTACTCTCATTG-------CCTT--GT-CCCCAATTGTTCAAACAACAAG-----------------AAAACAAGAAAGACATCAACAG---TCGAAAGTAGATACCGAATAAAAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCAGAATTT----TGAGCCCCG--T-------------------------CGGA-ATTTCCG------------------------TTTTATTGATTTTTT--------CC-AATGGA------TTTGCAGGCTTCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GAGGTGGSizeHit CountTotal NormTotal
No Reads
droEug1
AGC-----GCCGAAAGCG------------TCTT-GTTATTCTCTTTG-------CCTT--GT-CCCCAATTGTTTAAACATTAGG-----------------AAAA--------AAAACATCAG---TCGAAAGTTGATACCGAAAAAGAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCAAAATTT-----AACCTAC---C-------------------------TGAA-ATTTCCG------------------------TTTTATTGATTTTTT-------CAA-AATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCGGCCG---GCGGTGGSizeHit CountTotal NormTotal
No Reads
dm3
AGC-----ACCGAAAACATAGCA-------CCGA-AAAGTGCTCATTG-------CCAT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAAAAAGAGCATT-------------TGTCTAA-TTG---------CATACGTAGCACACTTG-----TGGCCAC---T-------------------------TGAATATCTCCG----------------------GTTTATATTGATTTTTAACCTATTTCC-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................ATACCGAAAAAGAGCATT-------------TGT..............................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTTCC-GATGGA------TTTGCAG..................................................1822.5050000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000001010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GAAGAAGGAGAAAAAGGA.....................1822.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000
.....................................................................................................................................AGTAGATACCGAAAAAGAG..................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TAAG-----------------AAA------------ACATCAG---TCGAAAGTAGA...............................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AGGCTGCCAAGATGAAGAAG................................2022.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AG---TCGAAAGTAGATACCGAAAA......................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000
....................................AAGTGCTCATTG-------CCAT--GT-CC........................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAAAAAGGAGA...................1831.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................TGCCAAGATGAAGAAGGAGAAA..........................2221.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AGTAGATACCGAAAAAGAGCAT...............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................GCCAAGATGAAGAAGGAGAAAAAGGA.....................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GTCTAA-TTG---------CATACGTAGCA..................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................GTCTAA-TTG---------CATACGTAGCACC................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AAAGAGCATT-------------TGTCTAA-TTG---------CA...........................................................................................................................................................................................2211.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCAG---TCGAAAGTAGATACCGAAAAA.....................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..C-----ACCGAAAACATAGCA-------CCGA-A......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................AGAGCATT-------------TGTCTAA-TTG---------.............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AA-TTG---------CATACGTAGCACACTTG-----TGGCCA.................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................CAG---TCGAAAGTAGATACCGAAAAAGAGC.................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................ATAAG-----------------AAA------------ACATCAG---TCGA......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TGCCAAGATGAAGAAGGAGAAAAAGGA.....................2721.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................TG-----TGGCCAC---T-------------------------TGAATATCTCCG----------------------.................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................CCAAGATGAAGAAGGAGAAAAAGG......................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................GAGAAAAAGGAGAAGCCATC............2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
.........................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGAAGAAGG...............................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................A-AAAGTGCTCATTG-------CCAT--GT-CCCCAA....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................A-------CCGA-AAAGTGCTCATTT-------...................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GAAAGTAGATACCGAAAAAGAG..................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TGTCTAA-TTG---------CATACGTAGCA..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTGATTTTTAACCTATTTCC-GATGGA------TT.......................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAG-----------------AAA------------ACATCAG---TCGAAAGTAGA...............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................AAGTAGATACCGAAAAAGAGCG................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCTGCCAAGATGAAGAAGGAG.............................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000
........................................................................................................................................AGATACCGAAAAAGAGCG................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATAAG-----------------AAA------------ACATCAG---TCGAAAGCT.................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................ATTG-------CCAT--GT-CCCCAATTG.................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................A-TTG---------CATACGTAGCACACTTG-----.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCGA-AAAGTGCTCATTG-------CCAT--G............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................................ATAAG-----------------AAA------------ACATCAG---TCGAAA....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ATCAG---TCGAAAGTAGATA.............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTAGATACCGAAAAAGAGCATT-------------TGTC.............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................TTTAACCTATTTCC-GATGGA------TTTGCAG..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GGCTGCCAAGATGAAGAAG................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GC-----ACCGAAAACATAGCA-------CCG.........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
................................................................................AATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGAT..............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CGAAAAAGAGCATT-------------TGTCTAA-A........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................GAAAGTAGATACCGAAAAAGA...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................AGATACCGAAAAAGAGCATT-------------T................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................AAAAAGGAGAAGCCATCCG---GCGGT..2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AAGATGAAGAAGGAGAAAAA........................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................GCTGCCAAGATGAAGAAG................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
......................................................................................................................................................................................................................................................................................................................................AGGCTGCCAAGATGAAGA..................................1820.5010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GCCAAGATGAAGAAGGAGAA...........................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GAGAAGCCATCCG---GCGGTGG2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGAAGAAGGAGAAAAAGGAGAAGCC...............2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AAGATGAAGAAGGAGAAAAAGG......................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAGGAGAAGC................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCTGCCAAGATGAAGAAGGA..............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................TGGA------TTTGCAGGCTGCCAAGATGAAGA..................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ATTTCC-GATGGA------TTTGCAGGC................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CC-GATGGA------TTTGCAGGCTGCC............................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AGAAAAAGGAGAAGCCATCC...........2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................ATTTCC-GATGGA------TTTGCAG..................................................1920.5010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AAAGGAGAAGCCATCCG---GCGG...2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAGGAGAAGCCATCCG---GC.....2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AAAGGAGAAGCCATCCG---GCGGTGG2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAAAAGGAGAAGCCATCCG---GCGGTG.2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GGCTGCCAAGATGAAGAAGGA..............................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGAAGAAGGAG.............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTCC-GATGGA------TTTGCAGGCTGCCA...........................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TATTTCC-GATGGA------TTTGCAGG.................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CTATTTCC-GATGGA------TTTGCAG..................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CCTATTTCC-GATGGA------TTTGCA...................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................................................................................................................CAAGATGAAGAAGGAGAAAAAGG......................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................TATTTCC-GATGGA------TTTGCAGGC................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGAAGAAGGAGAAAAAGGAGAAG.................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................AAGATGAAGAAGGAGAAAAAG.......................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTCC-GATGGA------TTTGCAGG.................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAAAAAGGAGAAGC................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CAAGATGAAGAAGGAGAAAAAGGA.....................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
................................................................................................................................................................................................................................................................................................................................................GATGAAGAAGGAGAAAAAGGAGAAGC................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCTGCCAAGATGAAGAAGGAGAAAA.........................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAAAAAGGAGAA..................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAGGAGAAG.................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGC-----ACTCACAACAAGGTG-------CCGA-AAAGTGCTCATTG-------CCAT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAAAAAGAGCGTT-------------TGTCTAA-TTG---------CATACGTAGCACACTTG-----TGGCCAC---T-------------------------TGAATATCTCTG----------------------ATTTGTATTGATTTTTAACCTTTTTCC-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................GTAGATACCGAAAAAGAGC.................................................................................................................................................................................................................................1911.00100100000000000000
..........................................................................TTAAACAATAAG-----------------AAA------------ACATCAG---TCGA......................................................................................................................................................................................................................................................2611.00100000010000000000
...........................................................................................................................................TACCGAAAAAGAGCGTT-------------TGTCTAA-T........................................................................................................................................................................................................2511.00100000000001000000
......................................................................................................................................................................................................................................................................................................................ATGGA------TTTGCAGGCTGCCAAGATGAA....................................2611.00100000001000000000
.............................................................................................................................................................................................................................................................................................................TTTTTCC-GATGGA------TTTGCAGGC................................................2211.00110000000000000000
......................................................................................................................................................................................................................................................................................................TTTAACCTTTTTCC-GATGGA------TTTG.....................................................2411.00101000000000000000
................................................................................................................................................................................................................................................................................................................TTCC-GATGGA------TTTGCAGGCT...............................................2011.00100100000000000000
..............................................................................................................................................................................................ATACGTAGCACACTTG-----TGGCCAC---T-------------------------...................................................................................................................................2411.00110000000000000000
........................................................................................................................ATCAG---TCGAAAGTAGATA.............................................................................................................................................................................................................................................1811.00110000000000000000
.........................................................................................................A------------ACATCAG---TCGAAAGTAGATACCGG.........................................................................................................................................................................................................................................2511.00100100000000000000
droSec2
AGC-----ACTCACAACAAGGCG-------CCGA-AAAGTGCTCATTG-------CCAT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAAAAAGAGCGTT-------------TGTCTAA-TTG---------CATACGTAGCACACTTG-----TGGCCAC---T-------------------------TGAATATCTCTG----------------------ATTTTTATTGATTTTTAACCTATTTCC-GATGGA------TTTACAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................AGGCTGCCAAGATGAAGAAGGAGA............................2420.5010010
................................................................................................................................................................................................................................................................................................................................................GATGAAGAAGGAGAAAAAG.......................1920.5010100
........................................................................................................................................................................................................................................................................................................................................GCTGCCAAGATGAAGAAG................................1820.5010010
............................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAGAAGCCATCCG---GCGGTG.2620.5010010
..............................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAAGCCATCCG---GC.....2020.5010010
........................................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAGGAGAAGC................1820.5010010
droYak3
AGC-----GCCGAAAACG------------TCTT-GTTATTCCCATTG-------CCGT--GT-CCCCAATTGTTTAAACAATAAG-----------------AAA------------ACATCAG---TCGAAAGTAGATACCGAACAAGAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCACATTT------TGGCAAA---T-------------------------TGAATGTATTAGTT--------------------GTTTTTATTGATTTTTAACCTATTTCC-TATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGGGAAAAAGGAAAAGCCATCCG---GCGGTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................ATTTCC-TATGGA------TTTGCAG..................................................1911.00101000000000
............................................................................................................................................................................................................................................................................................................................................CCAAGATGAAGAAGGGGAAAAAGGA.....................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................TGCCAAGATGAAGAAGGGGAAAAAGGAAA...................2911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................TGCCAAGATGAAGAAGGGGA............................2011.00100000100000
................................................................................................................................................................................................................................................................................................................................................GATGAAGAAGGGGAAAAAG.......................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................GCCAAGATGAAGAAGGGGAAA..........................2111.00101000000000
droEre2
AGA-----GTCGAAAACG------------TCTT-GTTATTCTCATTG-------CCGT--GT-CCCCAATTGTTTAAACAGTAAG-----------------AAA------------ACATCAG---TCGAAAGTTGAAACCTGAGAAGAGCGTT-------------TGCCTAA-TTG---------CATACGTAGCACACTT------TGGCCAA---T-------------------------TGAAAATTTTCGTTTT---TT---------------TTTTATTGATTTTTAACCTTTTTCT-GATGGA------TTTGCAGGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCG---GCGGCGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................GGCTGCCAAGATGAAGAAGGAGAAAA.........................2611.0010000100
...........................................................................................................................................................................................................................................................................................................................................GCCAAGATGAAGAAGGAGAA...........................2011.0010000100
................................................................................................................................................................................................................................................................................................................................................GATGAAGAAGGAGAAAAAGG......................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................GAAGAAGGAGAAAAAGGA.....................1811.0010000100
..........................................................................................................................................AAACCTGAGAAGAGCGTT-------------TGC..............................................................................................................................................................................................................2111.0010000100

Generated: 05/18/2015 at 12:48 AM