ID:

dps_1479

 Coordinate:

4_group3:599640-599925 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-77.4 -77.4 -77.3

Flybase annnotation

CDS [Dpse\GA18151-cds]; CDS [Dpse\GA18151-cds]; exon [dpse_GLEANR_2280:1]; exon [dpse_GLEANR_2280:2]; intron [Dpse\GA18151-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTTGGCCAAATTTCGAGGCAGCAATTGTTGCAGAATAGATGCAGCAGAGGTAGGCAATACCGATTCCAGATCGAATGAATGTGTAATAATGCAAGAAGTGGAGCCCCAATTGGAGATAAACACACCCACCAGGACGGGAGGGGAGAGGAGAGATCTGCTGCCCCGCCGATGAGCCGCATAACTGGACTTTGAACTTTGTACTCGGTCTCCCTTGACGTAGCTGATTTTGCGTGTGTGTGTATCTGTCTGCTTGTTGCGGGGGCCTCTTATGAGAGCTGTGTGACGATAATCTGCCAGCAGCGATTTGATTCTCTGCCCTGTTCACCCCTTTGCAGCCCTCCCCGCCGCGTCCCAACTCCAGCGCCTCCGTCTAATGTCCACAAAT
**************************************************.((.(((....(((((...)))))......))).))....((((((..(((((.(((((((.(((((((.((((((.(((((((((((..(((.((.(((....))).)).)))..)))..((((((......))).)))...........((..(((......)))..))....))))).))).))))))...))))).)).)))).)))((((((....))).)))...................((((.((......)).))))....)))))...)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M062
head
 GSM343916
embryo
 V112
male body
.................................................................................................................................................................................CATAACTGGACTTTGAACTTTG........................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0
.........AATTTCGAGGCAGCAATTGTT.................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..........ATTTCGAGGCAGCAATTGTTG................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................GGAGGGGAGAGGAGAGAGCTGCTGCCC.............................................................................................................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0
...............................CAGAATAGATGCAGCAGAG................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................................................................................CGCCTCCGTCTAATGTCC...... 18 0 1 1.00 1 1 0 0 0 0
.................................................................TCCAGATCAATTGAATGTG.............................................................................................................................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 1
......................................................................................................................................ACGGGAGGGAAGAGGTGA.......................................................................................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0
..................................................................................................................................CAGGACGGGAGGCGGGAGG............................................................................................................................................................................................................................................. 19 2 11 0.09 1 1 0 0 0 0
.......................................................................................................................................................................................................................................GTGTGTGTGTATTTGTCTG........................................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................................ATTTTGCGGGGGTGTGCAT............................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
...............................................................................................................................................................................................................................GATTTTGTGTGTGTGTGTA................................................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GCAACCGGTTTAAAGCTCCGTCGTTAACAACGTCTTATCTACGTCGTCTCCATCCGTTATGGCTAAGGTCTAGCTTACTTACACATTATTACGTTCTTCACCTCGGGGTTAACCTCTATTTGTGTGGGTGGTCCTGCCCTCCCCTCTCCTCTCTAGACGACGGGGCGGCTACTCGGCGTATTGACCTGAAACTTGAAACATGAGCCAGAGGGAACTGCATCGACTAAAACGCACACACACATAGACAGACGAACAACGCCCCCGGAGAATACTCTCGACACACTGCTATTAGACGGTCGTCGCTAAACTAAGAGACGGGACAAGTGGGGAAACGTCGGGAGGGGCGGCGCAGGGTTGAGGTCGCGGAGGCAGATTACAGGTGTTTA
**************************************************.((.(((....(((((...)))))......))).))....((((((..(((((.(((((((.(((((((.((((((.(((((((((((..(((.((.(((....))).)).)))..)))..((((((......))).)))...........((..(((......)))..))....))))).))).))))))...))))).)).)))).)))((((((....))).)))...................((((.((......)).))))....)))))...)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 SRR902010
ovaries
............................................................................................................................................................ACGCCGGGGCGGCTAATAGGC................................................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0
.......................................................................................................................................................................................................................................................................................ACACTGCTGTTAGACGGTCGT...................................................................................... 21 1 1 1.00 1 0 1 0
.....................................................................................................................................................................................................................................................................................................................................................................AGGTCGCTGAGGCAGATTAC......... 20 1 1 1.00 1 1 0 0
....................................................................................................................................................................................................................................................................................................................................................GGGGCGGCGCAGGGTTGAGGT......................... 21 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................................................................................................................................................................CGCGGAGGCAGATTACAG....... 18 0 1 1.00 1 1 0 0
..................................................................GGTCTAGCTAACTTACCCACT........................................................................................................................................................................................................................................................................................................... 21 3 4 0.50 2 2 0 0
..................................GTATCTACGTTGTCGCCATCC........................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0
...........................................................................................................................................................................................................................................................................................................................................................CGCAGGGTTGTGGTCTCG..................... 18 2 5 0.20 1 1 0 0
..............................................................................................................................................................................................................................................................................................................................GACAACCGGGGAAACGTCG................................................. 19 2 6 0.17 1 1 0 0
.............................................................................................................................................................................................................................................................................................................................................................................GAGGTAGGTTAGAGGTGTTTA 21 3 11 0.09 1 0 0 1
....................................................................................................................................................CTCTCTACATGACGGGGCA........................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:599590-599975 + dps_1479 CGTTGGCCAAATTTCGAGGCAGCAATTGTTGCAGAATAGATGCAGCAGAGGTAGGCAATA-C---------C------GATT---------------CCA-----GA----------------------------------------TCGA---ATGAATGTGTAATAAT-----------------------------GCAAGAAGTGGAGCCCCAATTGGAGATAAAC--ACACCCACCAGGACGGGAGGGGAGA---------G-----------------------------------------------------------GAGAGATCT-------------------------------------------------------------------------------GCT---GCCCCGCCGATG-AGCCGCATAACTGGACTTTGAACTTTGTACTCGGTCTCC--------CTTGACGT-----AG--------CTG------A--TTTTGCG-----TG------------------------------TGTGT---GTA--TCTGTCTGCTTGTTGCGG-GG----GCCTCTTATGAGA---------------------------------------------GCTGTGT-G----ACG-ATAATCTGCCAGCAGCGATTTGATTCTCTGCCCTG-T-TCAC----CCCTTTGCAGCCCTCCCCG---CCGCGTCCCAAC---T---CCAGCGCCT------------CCGTCTAATGTCCAC------------AAAT
droPer2 scaffold_1:2075443-2075828 + CGTTGGCCAAATTTCGAGGCAGCAATTGTTGCAGAATAGATGCAGCAGAGGTAGGCAATA-C---------C------GTTT---------------CCA-----GA----------------------------------------TCGA---ATGAATGTGTAATAAT-----------------------------GCAAGAAGTGGAGCCCCAATTGGAGATAAAC--ACACCCACCAGGACGGGAGGGGAGA---------G-----------------------------------------------------------GAGAGATCT-------------------------------------------------------------------------------GCT---GCCCCGCAGATG-AGCCGCATAACTGGACTTTGAACTTTGTACTCGGTCTCC--------CTTGACGT-----AG--------CTG------A--TTTTGCG-----TG------------------------------TGTGT---GTA--TCTGTCTGCTTGTTGCGG-GG----GCCTCTTATGAGA---------------------------------------------GCTGTGT-G----ACG-ATAATCTGCCAACAGCGATTTGATTCTCTGCCCTG-T-TCAC----CCCTTTGCAGCCCTCCCCG---CCGCGTCCCAAC---T---CCAGCGCCT------------CCGTCTAATGTCCAC------------AAAT
droWil2 scf2_1100000004516:581383-581819 - CATTGGCCAAGTTTCTCGGCATCAATTATTGCAAAATCGCTGTGCTAGAGGTAATA-ATG-CC--GACGTGA-AGTCAAATTAG-GAAA-AA-TTAA---------------ATAATTCTTAGTACATGTAGATCTCCTATATGTAT-GGATAGATAAAGGA--------------------------------------------------------------------AG--------------------TATA-AAAAACATATTCGAATATATGTACGTC-AAT---GT---GGGG-----------TTATAA---------A-----AT-------C--GC-----GAATGTCGAATCTCG-----------------------------------AT---------TCGAAT---C---TCTACCGTTGCGGCATAA-TGGACTTTGAACTTTGTACTT----TAT--------GTTGACGT-----C-------GGCGTCTGTG----------------TATGATTTTA-----------------------------------T---TTTGAT---TGTGT-ATGGGGCCCACTTATGAGATAATA-------------------------------------------TT--------GTTACTAATC-TTAACC------------CCCCTGCCTG-C-TTG-------CCTCACAGCTTTTCCCGCAGCCGCTGCCCAAC---T---ATA---TCGCCAGCAATCACCACGTCTAATGTCCACCCAAACCGCTGCCAAT
droVir3 scaffold_12723:4050357-4050699 - dvi_1619 AATCGGCCAAATTTCGAGGCAGCAACTGCTGCAGAACAAATGCGCTAGAGGTAATTATAC----AA-----A-AATA-GATTAAAAAT--AATGCAA---------------ATAATACTTAAAACGGGCAGA-----------------------AA------------------------------------------------------------------------------------------------AT-------GCAGTGCAGTGTGTG--------------------------CAGTATACACGATTAATTGAAATAGAGAATTGTTAAT---------------------------------------------------------------------CGCTTGG--------ACAGCGTTTGCCGCATAACTGGACTTTGACCTTTGTACTC----CCC--------CGTA-------------------------------------------------------------------------------------------------------------------------TGAGATAATGCCAAAGTCTCAACTTGTATATGAAATGTGCTGTTATGGAATCTCTGAACAGTGTTAATT-------------------------------GA-T-T---------AATTTCAGCATATCCTG---CTGCTGCACAAC---T---CCA---GCG------------TCGTCTAATGTCCAC------------AAAT
droMoj3 scaffold_6500:14663110-14663472 + AATTGGTCAAATAGCCCGACAACAATTGCTGCACCATAAATGCTCCAGAGGTATTTTAAC----AA-----T-GATA-ACTTTAACTAATAATAGCTCCA-----TA----------------------------------------TCGAACGATAAATGCA------------------------------------GATAGA-------------------------AA----------------ACAATATG--------------------TG--------------------------GTACATATTTATATGTTAAAGATAAAGAAC--------T-GC------------------------------------ATTTATAGCCT-TTT---TAAT------AGCTGAGA---T---ATTAGC--AATCTGAAAATTGGACTTTGAACTTTGTACTA----TTG-----CCGTTAGAGAT-----AGAGAT--AGCGA----A----AA-------------------------------------------------------T---G---------------------------------------------CTGGACCTGTGTATGAAATATGATTTTGTGATAGCTGTGT-TAACATTAATT-------------------------------AT-T-C---------ACTCCCAGTGTACCCGG---CATCAGTGCAGT---TAC------ATCG------------TCGCCTAATGTCCAC------------AAAT
droGri2 scaffold_15252:3605994-3606337 + CGTTGGCCAAATATCCAAACAGCAATTGCTGAACAATAAATGCTCAAGAGGTAATCGGCT----AA-----A-AATA-AACTAAAGAAATAAAGACG---------------ATACATCTTAAAACAGTTTCA------AAATAT-------------------------------------------------------------------------------------AT----------------G--ATAAT----TGC----------------------TAA---GA---TAG---------------------------C-----AT-------A--A------CCAACAAGTATAAAT----------------G-----------TTATCATATT-------GCCCGA--------AAAGCAGCGGTCGAATAACTGGACTTTGACCTTTGTACTA----GAC-----C--AATA-TGCGATAACACCAAACGACTG----AGACT--TTGCTTGT-----------CTACTA--TTGGGCATTGA-------------------------------------------------------TAT--------------------------------------------------TAATATTCATT-------------------------------CT-T-C-CA-----TTTGTGTAGCACATCCAT---TCTCTGCACAAC---T---CCA---GCG------------ACGTCTAATGTCTAC------------GAAT
droAna3 scaffold_12943:952025-952407 - AGTTGGACAAATTTCCCGGCAGCAGTTGCTGCAGAATAAGTGCACGAGAGGTGAGTAATT----AA-----A-T--G-GGTTCTAATT--AAAA-------------------------------------------------------------TAACTACGGGATA----------------------------------CAAAGGGGAGCC-------------------------------------------------------------------A-----------------------TCCAGGTAATAAAGTCGGAAAGAAAGACT--------T-T-------------------------------CCCTCTCACTCTATCGCACCCCCG--------------CGGA---C---GCCGCCGCCGCCGCATAACTGGACTTTGCACTTTGTACTC----TCTCT-TGTCGCTTGACGT-----CGACAC--AGTGC--GTCTCTT--TCGCGGCT---------AGGCGATT------------T-GTTTGATTTT--TG--T---TCCGAT--TTTCGA-GT----G----CACGGAGATAGCG-----------------------------------------------------ACCACTAATC-GAA----------------------ATCTT-TAAC-----GCCGCGCAGCCCTGCCCA---TTTCGAGCCAGC---TGCTCCAGCAGCG------------CCGCCTTATGTCCAC------------GAAC
droBip1 scf7180000396728:2185906-2186268 + AGTTGGACAAATATCCCGGCAGCAGTTGTTGCAGAATAAGTGCACCAGAGGTGAGTAATT----AA-----A-GGGG-GGTTTTAATT--ACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTAGG-CTCTAG-GAA---GG---GGGGTCTAGTTCAGGTAAAAATGTGCGAAAGAAAGACT--------T-T-----------CCCTTT--------------CCCT--CTCACTCTT------------T------CGCT------CCCCCGCGGACGCTGCCGCATAACTGGACTTTGCACTTTGTACTC----TTC---TGTCGCTTGACGT-----CGACACTTGGC----GTCTCTT--TCGCGACT---------CG--------------------------------------------------CCGA-GT----A----CTCGGAGATAGCG--------------------------------------------------GCGACCACTAATC-GAA----------------------GTCTT-TAAC-----CCCTCGCAGCCCTGCCCA---TTTCGAGCCAGCTGCTCCTCCAACACCG------------CCGCCTCATGTCCAC------------CAAC
droKik1 scf7180000302472:1911955-1912331 - TGTTGGCCAACTTTCGCGACAGCAACTGCTGCAGAATAGGTGCACTAGAGGTAGGTACTAT--TCG-----G------GATT---------------TTACA---G-AA-------------------------------------------------------------T-------TTAAGGGAACG-------------------------------------------GCAGTCCGGAATCCGGGCGAGAAT---------CGTGGAGCTTGTCCCCCCCAG-----ATAGTGGT------------------------------------------T--AC-----TCTTTCGGTACCTGT------------------CT-------------G-GGCTCT---CATCGATTCTTC---CTCGCCGACGCCGCATAAATGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----CGCCACTCGTCTGCTGTCTC-----TGTCTCG---CTGCCTTTCTGCTTTC---------------CAAGTTTT-TTTTT---GTCGAT---TTCCACTT----G----TAGTGAGATAATA-----------------------------------------------------A---------------AGTAGA---------------TT-T-GAAC-----CCTTCACAGCTCTGCCCG---TCTCGAC------------------CCG------------CCGTCTCATGTCCAC------------GAAT
droFic1 scf7180000454076:75815-76222 + CGTTGGCCAAATTTCGAGAAAGCAATTATTGCAGAATAGGTGCACGAAAGGTGGGTAAAAT--T-G----TG------AATT---------------CTAT----T-AA----------------------------------------------------------------TTACTAAAAGGATAAGTTT-------GAAAAA-------------------------AG----------------GAAATA-------TCTGAATGGAATTGGTCCCCTGA-TAA---GTAGGGGG---------------------------T-----AG-------CAGAA-----TATAGCGGTATCTTTAT----------------A----------------GT-------TAGAGAGC---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------AAGCTTCTGTC----------------TCTCGCTTTCTGTTT--TTGATTGCTGATGTCTGATTTC--TGCTT---TCCGAT--TTTCGA-GT----GCCT-CCGTGAGATAATG-----------------------------------------------------TCCACTAATC-GTA-ACTTTGAT-------------CTT-TATAAC-----CCCACGCAGCCCTGCCCA---TTTCGATGAATC---TTGTCCAGAATCG------------TCGACTCATGTCCAC------------CAAT
droEle1 scf7180000491186:2573873-2574284 - CGTTGGCCAAATATCGCGACAGCAATTGCTGCATAATAAGTGCACGAGAGGTGGGTAAAA---T-A----AAATGCG-GATT---------------CCA-------GCGAGA----------------------------------G----------------------G--GATCGAAAAGGGAAAGTACAAGTTCC-------------------------------AG----------------G--GTAAT----TCCAGAGTCAAATTTGGCCCCATG-GAACCCAT---GAG---------------------------T-----GA-------C--GCTCTGGTCTAGCGGTATCG--------GTTTCT----GTCTCTCTCT-----------C------TGGCAAGT---C---GCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----ATA----TAGTCTCTGTC-----------TTCCCTCTCGCTGTCTGATT----------------------TC--TGTTT---TCCGAT---TTCGA-GG----G----CCGTGAGATAATG-----------------------------------------------------ACCACTAATC-GTGAAC--CGAT-------------CTC-T-CAAC-----CACTCGCAGCCCTGCCCG---TTTCGGCCCATC---TGCTCCAGGGTCG------------CCGCCTAATGTCCAG------------CAAT
droRho1 scf7180000778085:380159-380532 + CGTTGGCCAAATTTCGCGACAACAATTGCTGCACAATAAGTGCACGAGAGGTGGGTAAT----TAC-----C------GATT---------------TTA--------T-------------------------------------------------------------GGAGATCGGAAAGGGAAAGCAAGAGTTTT-------------------------------AG----------------GTAATAAT-------GTAGTGTAGTTTTTGCCAATG-GAA----------G---------------------------T-----AC-------C--GA-----TCTAGCGGTATCTCTCT---------------------------------ATT------TGGAGGGC---C---GCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----ATGTA--TAGTGCCTGTC----------------TCTCGCTTTCTGCTT----------------------------------TCCGAT---TTCGA-GT----G----CCGTGAGATAATG-----------------------------------------------------ACCACTAATC-GTCAAC--CGAA-------------CTC-G-TAACCCCTTCCCCCGCAGCCCTGCCCG---TTTCGGCCCATC---TTCTCCAGAACCG------------CCGCCTTATGTCCAC------------GACT
droBia1 scf7180000302408:3595243-3595638 + CGTTGGCCAAATTTCGCGACAGCAGCTGCTGCACAATAAGTGCACGAGAGGTGGGTAATT---T-A----TAT------CTT---------------CCC-----C-AA-------------------------------------------------------------G-------GAAAGGGAAAGTAAAGATTGC-------------------------------AG--------------------TAAT-CGGGCCAGACTGGAATTTGGCCCCCTG-GAA---GT---GGGGCCCAG---------------------T-----AC-------C--GC-----TCTAGCGGCATCTCG----------------CTCTCTCGCCAAATC---TATT------TGGTGAGC---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------CGGCCGCAGTC----------------TCTCGCTTTCTGTTTT----------------------C--TGATT---TCCGAT---TTCGA-GG----G----CCCTGAGATAATG-----------------------------------------------------ACCACTAATC-GCAACCAACGAT-------------CTC-T-GAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCGCATC---TCCTCCAGAGCCG------------CCGCCTGATGTCCAC------------CAAC
droTak1 scf7180000415880:317957-318355 + CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACGAGAGGTGGGTAAAT---T-G----GTG------GTT---------------CTTC----A-GTGAAA----------------------------------A----------------------G-------GAAAGGGAAAGTAGAGATTGC-------------------------------GG----------------CTAATAAT-AATGCCGGAGTGGAATTTGGAACCATG-GAA---GT---GGG---------------------------C-----AC-------T--A-------CTAGCGGTATCTCA----------------CTCTCTA------------GTT-TTTTTTGATGAGC---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCACTCTCTCTCTTGACGT-----A------GAGCTTCTGTC----------------TCTCGCTTTCTGTTTTC---------------CGATTTT--TGATT---TCCGAT---TTCGA-GT----AGAG-CCGTGAGATAAT---------------------------------------------------------ACTAATC----------GAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCCCACC---TCCTCCAGAGCCG------------CCGCCTGATGTCCAC------------GAAT
droEug1 scf7180000409554:5362344-5362728 + TGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGTACGAGAGGTAGGTTAAC---T-T----GAA------AGA---------------CTTC----T-AA-------------------------------------------------------------GAAAAACGTATAGGGAAAGTAAAAATTGC-------------------------------AA----------------ATTACC------CTTAGAATGAAATTTGTCCCCTTA-GAA---AG---GGG---------------------------T-----AC-------T--GC-----TCAAGCGGTATCTCT----------------TTCTTT------------TATT-TT-CTGGGTGAGC---C---ACCCCCGACGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTGCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTCGA-GG----G----CCCTGAGATAATG-----------------------------------------------------ACAACTAATC-ACCAAAACCGAT-------------CTC-T-TCAC-----CCCACGCAGCCCTACCCA---TTTCGGCCCATC---TCCTCCAAAACCG------------CCGCCTAATGTCCAC------------GACA
dm3 chr2L:9576177-9576567 - CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACCAGAGGTGGGTTAAT---T-A----GAA------GTT---------------CTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AG----------------GCCATAAT-TCTTCTACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------T--AC-----TCTAGCGGTATCTCT----------------GTCTCTCTCCCGTTCCCGTGTT------AGCTGAAT---C---TCCCCCGATGCCGCATAACTGGACTTTGAACTTTGTACTC----TCC--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTCGA-GT----G----CCGTGAGATAATG-----------------------------------------------------TGCACTAATC-GCAAACAACAAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCCCAGC---TTCTCCAGAGGCG------------CCGCCTAATGTCCAC------------GAAT
droSim2 2l:9259619-9260006 - dsi_7630 CGTTGGCCAAATTTCGCGACAGCAATTGTTGCAGAATAAGTGCACAAGAGGTGGGTTAAT---T-G----GAA------GTT---------------CTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AA----------------GCCATAAT----TCCACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGGTATCTCT----------------GTCTCCCTCCCGTTCCCGTGTT------CGCTGAGT---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTAGA-GT----G----CCGTGAGATAATG-----------------------------------------------------TGCACTAATC-GCAAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCCCAGC---TCCTCCAGAGCCG------------CCGCCTAATGTCCAC------------GAAT
droSec2 scaffold_3:5023367-5023741 - CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACAAGAGGTGGGTTAAT---T-G----GAA------GTT---------------CTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AA----------------GCCATAAT----TCCACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGGTATCTCT----------------GTCTCTCTCCCGTTCCCGTGTT------CGCTGAGT---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------T-------------------------CCGTGAGATAATG-----------------------------------------------------TGCACTAATC-GCAAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCTA---TTTCGGCCCAGC---TCCTCCAGAGCCG------------CCGCCTAATGTCCAC------------GAAT
droYak3 2L:12259586-12259992 - CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACAAGAGGTGGGTTTAT---T-G----GAA------GTT---------------CTTCGGCTT-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AG----------------CTAATAAT----TCCACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGGTATCTCTGTATCTGTATCTGT--CTCTCTCCCCCCTTACCGTGCT------CGCCGAGA---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTCGA-GT----G--T-CCGTGAGATAATG-----------------------------------------------------CCCACTAATC-GCTAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCGCAGC---TCCTCCAGAGTCG------------CCGCCTAATGTCCAC------------GAAT
droEre2 scaffold_4929:10181825-10182235 - CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACAAGAGGTGGGTTAAT---T-G----GCA------GTT---------------GTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAACTGC-------------------------------AG----------------GTAATAAT----TCCACACTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--GC-----TCTAGCGGTATCTCTGTATCTGTATCT----GTCTCTCTCCCGTTCCCGTGCT------CGCTC-T---GC---TCCACCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCGGTC----------------TCTTGCTTTCTGATTT----------------------C--CGATT---TCTGAT---TTCGA-GT----G----CCGTGAGATAATGCCCTA------------------------------------------------ATCGCTAATC-GCTAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TGACGGCGCAGC---TCCTCCAGAGTCG------------CCGCCTAATGTCCTC------------GAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGTTGGCCAAATTTCGAGGCAGCAATTGTTGCAGAATAGATGCAGCAGAGGTAGGCAATA-C---------C------GATT---------------CCA-----GA----------------------------------------TCGA---ATGAATGTGTAATAAT-----------------------------GCAAGAAGTGGAGCCCCAATTGGAGATAAAC--ACACCCACCAGGACGGGAGGGGAGA---------G-----------------------------------------------------------GAGAGATCT-------------------------------------------------------------------------------GCT---GCCCCGCCGATG-AGCCGCATAACTGGACTTTGAACTTTGTACTCGGTCTCC--------CTTGACGT-----AG--------CTG------A--TTTTGCG-----TG------------------------------TGTGT---GTA--TCTGTCTGCTTGTTGCGG-GG----GCCTCTTATGAGA---------------------------------------------GCTGTGT-G----ACG-ATAATCTGCCAGCAGCGATTTGATTCTCTGCCCTG-T-TCAC----CCCTTTGCAGCCCTCCCCG---CCGCGTCCCAAC---T---CCAGCGCCT------------CCGTCTAATGTCCAC------------AAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAACTGGACTTTGAACTTTG...............................................................................................................................................................................................................................................................................................................................................................2212.0020000000200
.........AATTTCGAGGCAGCAATTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........ATTTCGAGGCAGCAATTGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................CAGAATAGATGCAGCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCT------------CCGTCTAATGTCC..................1811.0010100000000
droPer2
CGTTGGCCAAATTTCGAGGCAGCAATTGTTGCAGAATAGATGCAGCAGAGGTAGGCAATA-C---------C------GTTT---------------CCA-----GA----------------------------------------TCGA---ATGAATGTGTAATAAT-----------------------------GCAAGAAGTGGAGCCCCAATTGGAGATAAAC--ACACCCACCAGGACGGGAGGGGAGA---------G-----------------------------------------------------------GAGAGATCT-------------------------------------------------------------------------------GCT---GCCCCGCAGATG-AGCCGCATAACTGGACTTTGAACTTTGTACTCGGTCTCC--------CTTGACGT-----AG--------CTG------A--TTTTGCG-----TG------------------------------TGTGT---GTA--TCTGTCTGCTTGTTGCGG-GG----GCCTCTTATGAGA---------------------------------------------GCTGTGT-G----ACG-ATAATCTGCCAACAGCGATTTGATTCTCTGCCCTG-T-TCAC----CCCTTTGCAGCCCTCCCCG---CCGCGTCCCAAC---T---CCAGCGCCT------------CCGTCTAATGTCCAC------------AAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCCG---CCGCGTCCCAAC---T---CCAGC...............................................2512.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAC---T---CCAGCGCCT------------...............................1811.001100000
droWil2
CATTGGCCAAGTTTCTCGGCATCAATTATTGCAAAATCGCTGTGCTAGAGGTAATA-ATG-CC--GACGTGA-AGTCAAATTAG-GAAA-AA-TTAA---------------ATAATTCTTAGTACATGTAGATCTCCTATATGTAT-GGATAGATAAAGGA--------------------------------------------------------------------AG--------------------TATA-AAAAACATATTCGAATATATGTACGTC-AAT---GT---GGGG-----------TTATAA---------A-----AT-------C--GC-----GAATGTCGAATCTCG-----------------------------------AT---------TCGAAT---C---TCTACCGTTGCGGCATAA-TGGACTTTGAACTTTGTACTT----TAT--------GTTGACGT-----C-------GGCGTCTGTG----------------TATGATTTTA-----------------------------------T---TTTGAT---TGTGT-ATGGGGCCCACTTATGAGATAATA-------------------------------------------TT--------GTTACTAATC-TTAACC------------CCCCTGCCTG-C-TTG-------CCTCACAGCTTTTCCCGCAGCCGCTGCCCAAC---T---ATA---TCGCCAGCAATCACCACGTCTAATGTCCACCCAAACCGCTGCCAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................CAATTATTGCAAAATCGCTGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.........................TTATTGCAAAATCGCTGTGCTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
.............................................................................................................................................................................................................................................................ATA-AAAAACATATTCGAATATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..............................GCAAAATCGCTGTGCTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................C--GC-----GAATGTCGAATCTCG-----------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TGGACTTTGAACTTTGTA.............................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAATCACCACGTCTAATGTCCACCCA.............2911.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---TCGCCAGCAATCACCACGT...........................2111.00101000
.....................................................ATA-ATG-CC--GACGTGA-AGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCACGTCTAATGTCCACCCAAACCGC.......2911.00101000
................................AAAATCGCTGTGCTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---T---ATA---TCGCCAGCAATCACCACGTC..........................2711.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---T---ATA---TCGCCAGCAATCACCA..............................2311.00100010
droVir3
AATCGGCCAAATTTCGAGGCAGCAACTGCTGCAGAACAAATGCGCTAGAGGTAATTATAC----AA-----A-AATA-GATTAAAAAT--AATGCAA---------------ATAATACTTAAAACGGGCAGA-----------------------AA------------------------------------------------------------------------------------------------AT-------GCAGTGCAGTGTGTG--------------------------CAGTATACACGATTAATTGAAATAGAGAATTGTTAAT---------------------------------------------------------------------CGCTTGG--------ACAGCGTTTGCCGCATAACTGGACTTTGACCTTTGTACTC----CCC--------CGTA-------------------------------------------------------------------------------------------------------------------------TGAGATAATGCCAAAGTCTCAACTTGTATATGAAATGTGCTGTTATGGAATCTCTGAACAGTGTTAATT-------------------------------GA-T-T---------AATTTCAGCATATCCTG---CTGCTGCACAAC---T---CCA---GCG------------TCGTCTAATGTCCAC------------AAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................TTGTTAAT---------------------------------------------------------------------CGCTTGG--------ACAGCGTT..........................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---T---CCA---GCG------------TCGTCTAATGT....................2112.002001000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTG---CTGCTGCACAAC---T---C...................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---CTGCTGCACAAC---T---CCA---GCG------------TCGTC..........................2611.001000000000000000000000000000100000000000000000000000000000000000
......CCAAATTTCGAGGCAGCAACTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATT-------------------------------GA-T-T---------AATTTCAGC..................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
........AAATTTCGAGGCAGCAACTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
.......CAAATTTCGAGGCAGCAACTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---T---CCA---GCG------------TCGTCTAATGTCCAC------------A...2411.001001000000000000000000000000000000000000000000000000000000000000
.............................TGCAGAACAAATGCGCTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCACAAC---T---CCA---GCG------------T..............................2011.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTG---CTGCTGCACAAC---T---CCA---GCG------------TC.............................2911.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAC---T---CCA---GCG------------TCGTCTAATGT....................2411.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................TGTTAAT---------------------------------------------------------------------CGCTTGG--------ACAGCGTT..........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAAC---T---CCA---GCG------------TCGTCTAATGTCC..................2811.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCACAAC---T---CCA---GCG------------TCGTCTAATGTC...................2911.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTG---CTGCTGCACAAC---T---CC..................................................2211.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AATTGTTAAT---------------------------------------------------------------------CGCTTGG--------ACA...............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCACAAC---T---CCA---GCG------------TCGTCTAA.......................2611.001000000000000000000000000000000000000001000000000000000000000000
.................................GAACAAATGCGCTAGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AAT---------------------------------------------------------------------CGCTTGG--------ACAGCGTTTG........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGTTATGGAATCTCTG......................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGACCTTTGTACTC----CCC--------...........................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................GCAGAACAAATGCGCTAGAGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000000000001000000000000000000000000000000000000000000000000000
droMoj3
AATTGGTCAAATAGCCCGACAACAATTGCTGCACCATAAATGCTCCAGAGGTATTTTAAC----AA-----T-GATA-ACTTTAACTAATAATAGCTCCA-----TA----------------------------------------TCGAACGATAAATGCA------------------------------------GATAGA-------------------------AA----------------ACAATATG--------------------TG--------------------------GTACATATTTATATGTTAAAGATAAAGAAC--------T-GC------------------------------------ATTTATAGCCT-TTT---TAAT------AGCTGAGA---T---ATTAGC--AATCTGAAAATTGGACTTTGAACTTTGTACTA----TTG-----CCGTTAGAGAT-----AGAGAT--AGCGA----A----AA-------------------------------------------------------T---G---------------------------------------------CTGGACCTGTGTATGAAATATGATTTTGTGATAGCTGTGT-TAACATTAATT-------------------------------AT-T-C---------ACTCCCAGTGTACCCGG---CATCAGTGCAGT---TAC------ATCG------------TCGCCTAATGTCCAC------------AAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---CATCAGTGCAGT---TAC------ATCG------------TCGCC..........................2611.001100000
...TGGTCAAATAGCCCGACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---CATCAGTGCAGT---TAC------ATCG------------T..............................2211.001000001
.............GCCCGACAACAATTGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
.....GTCAAATAGCCCGACAACAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
CGTTGGCCAAATATCCAAACAGCAATTGCTGAACAATAAATGCTCAAGAGGTAATCGGCT----AA-----A-AATA-AACTAAAGAAATAAAGACG---------------ATACATCTTAAAACAGTTTCA------AAATAT-------------------------------------------------------------------------------------AT----------------G--ATAAT----TGC----------------------TAA---GA---TAG---------------------------C-----AT-------A--A------CCAACAAGTATAAAT----------------G-----------TTATCATATT-------GCCCGA--------AAAGCAGCGGTCGAATAACTGGACTTTGACCTTTGTACTA----GAC-----C--AATA-TGCGATAACACCAAACGACTG----AGACT--TTGCTTGT-----------CTACTA--TTGGGCATTGA-------------------------------------------------------TAT--------------------------------------------------TAATATTCATT-------------------------------CT-T-C-CA-----TTTGTGTAGCACATCCAT---TCTCTGCACAAC---T---CCA---GCG------------ACGTCTAATGTCTAC------------GAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AGTTGGACAAATTTCCCGGCAGCAGTTGCTGCAGAATAAGTGCACGAGAGGTGAGTAATT----AA-----A-T--G-GGTTCTAATT--AAAA-------------------------------------------------------------TAACTACGGGATA----------------------------------CAAAGGGGAGCC-------------------------------------------------------------------A-----------------------TCCAGGTAATAAAGTCGGAAAGAAAGACT--------T-T-------------------------------CCCTCTCACTCTATCGCACCCCCG--------------CGGA---C---GCCGCCGCCGCCGCATAACTGGACTTTGCACTTTGTACTC----TCTCT-TGTCGCTTGACGT-----CGACAC--AGTGC--GTCTCTT--TCGCGGCT---------AGGCGATT------------T-GTTTGATTTT--TG--T---TCCGAT--TTTCGA-GT----G----CACGGAGATAGCG-----------------------------------------------------ACCACTAATC-GAA----------------------ATCTT-TAAC-----GCCGCGCAGCCCTGCCCA---TTTCGAGCCAGC---TGCTCCAGCAGCG------------CCGCCTTATGTCCAC------------GAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........ATTTCCCGGCAGCAGTTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
.....................................AAGTGCACGAGAGGTGAGTAATT----A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....GGACAAATTTCCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.GTTGGACAAATTTCCCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCA---TTTCGAGCCAGC---TGCTCCAG................................................2611.001100000
.......CAAATTTCCCGGCAGCAGTTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...............................CAGAATAAGTGCACGAGAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
......ACAAATTTCCCGGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....GACAAATTTCCCGGCAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
AGTTGGACAAATATCCCGGCAGCAGTTGTTGCAGAATAAGTGCACCAGAGGTGAGTAATT----AA-----A-GGGG-GGTTTTAATT--ACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTAGG-CTCTAG-GAA---GG---GGGGTCTAGTTCAGGTAAAAATGTGCGAAAGAAAGACT--------T-T-----------CCCTTT--------------CCCT--CTCACTCTT------------T------CGCT------CCCCCGCGGACGCTGCCGCATAACTGGACTTTGCACTTTGTACTC----TTC---TGTCGCTTGACGT-----CGACACTTGGC----GTCTCTT--TCGCGACT---------CG--------------------------------------------------CCGA-GT----A----CTCGGAGATAGCG--------------------------------------------------GCGACCACTAATC-GAA----------------------GTCTT-TAAC-----CCCTCGCAGCCCTGCCCA---TTTCGAGCCAGCTGCTCCTCCAACACCG------------CCGCCTCATGTCCAC------------CAACSizeHit CountTotal NormTotal
No Reads
droKik1
TGTTGGCCAACTTTCGCGACAGCAACTGCTGCAGAATAGGTGCACTAGAGGTAGGTACTAT--TCG-----G------GATT---------------TTACA---G-AA-------------------------------------------------------------T-------TTAAGGGAACG-------------------------------------------GCAGTCCGGAATCCGGGCGAGAAT---------CGTGGAGCTTGTCCCCCCCAG-----ATAGTGGT------------------------------------------T--AC-----TCTTTCGGTACCTGT------------------CT-------------G-GGCTCT---CATCGATTCTTC---CTCGCCGACGCCGCATAAATGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----CGCCACTCGTCTGCTGTCTC-----TGTCTCG---CTGCCTTTCTGCTTTC---------------CAAGTTTT-TTTTT---GTCGAT---TTCCACTT----G----TAGTGAGATAATA-----------------------------------------------------A---------------AGTAGA---------------TT-T-GAAC-----CCTTCACAGCTCTGCCCG---TCTCGAC------------------CCG------------CCGTCTCATGTCCAC------------GAATSizeHit CountTotal NormTotal
No Reads
droFic1
CGTTGGCCAAATTTCGAGAAAGCAATTATTGCAGAATAGGTGCACGAAAGGTGGGTAAAAT--T-G----TG------AATT---------------CTAT----T-AA----------------------------------------------------------------TTACTAAAAGGATAAGTTT-------GAAAAA-------------------------AG----------------GAAATA-------TCTGAATGGAATTGGTCCCCTGA-TAA---GTAGGGGG---------------------------T-----AG-------CAGAA-----TATAGCGGTATCTTTAT----------------A----------------GT-------TAGAGAGC---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------AAGCTTCTGTC----------------TCTCGCTTTCTGTTT--TTGATTGCTGATGTCTGATTTC--TGCTT---TCCGAT--TTTCGA-GT----GCCT-CCGTGAGATAATG-----------------------------------------------------TCCACTAATC-GTA-ACTTTGAT-------------CTT-TATAAC-----CCCACGCAGCCCTGCCCA---TTTCGATGAATC---TTGTCCAGAATCG------------TCGACTCATGTCCAC------------CAATSizeHit CountTotal NormTotal
No Reads
droEle1
CGTTGGCCAAATATCGCGACAGCAATTGCTGCATAATAAGTGCACGAGAGGTGGGTAAAA---T-A----AAATGCG-GATT---------------CCA-------GCGAGA----------------------------------G----------------------G--GATCGAAAAGGGAAAGTACAAGTTCC-------------------------------AG----------------G--GTAAT----TCCAGAGTCAAATTTGGCCCCATG-GAACCCAT---GAG---------------------------T-----GA-------C--GCTCTGGTCTAGCGGTATCG--------GTTTCT----GTCTCTCTCT-----------C------TGGCAAGT---C---GCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----ATA----TAGTCTCTGTC-----------TTCCCTCTCGCTGTCTGATT----------------------TC--TGTTT---TCCGAT---TTCGA-GG----G----CCGTGAGATAATG-----------------------------------------------------ACCACTAATC-GTGAAC--CGAT-------------CTC-T-CAAC-----CACTCGCAGCCCTGCCCG---TTTCGGCCCATC---TGCTCCAGGGTCG------------CCGCCTAATGTCCAG------------CAATSizeHit CountTotal NormTotal
No Reads
droRho1
CGTTGGCCAAATTTCGCGACAACAATTGCTGCACAATAAGTGCACGAGAGGTGGGTAAT----TAC-----C------GATT---------------TTA--------T-------------------------------------------------------------GGAGATCGGAAAGGGAAAGCAAGAGTTTT-------------------------------AG----------------GTAATAAT-------GTAGTGTAGTTTTTGCCAATG-GAA----------G---------------------------T-----AC-------C--GA-----TCTAGCGGTATCTCTCT---------------------------------ATT------TGGAGGGC---C---GCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----ATGTA--TAGTGCCTGTC----------------TCTCGCTTTCTGCTT----------------------------------TCCGAT---TTCGA-GT----G----CCGTGAGATAATG-----------------------------------------------------ACCACTAATC-GTCAAC--CGAA-------------CTC-G-TAACCCCTTCCCCCGCAGCCCTGCCCG---TTTCGGCCCATC---TTCTCCAGAACCG------------CCGCCTTATGTCCAC------------GACTSizeHit CountTotal NormTotal
No Reads
droBia1
CGTTGGCCAAATTTCGCGACAGCAGCTGCTGCACAATAAGTGCACGAGAGGTGGGTAATT---T-A----TAT------CTT---------------CCC-----C-AA-------------------------------------------------------------G-------GAAAGGGAAAGTAAAGATTGC-------------------------------AG--------------------TAAT-CGGGCCAGACTGGAATTTGGCCCCCTG-GAA---GT---GGGGCCCAG---------------------T-----AC-------C--GC-----TCTAGCGGCATCTCG----------------CTCTCTCGCCAAATC---TATT------TGGTGAGC---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------CGGCCGCAGTC----------------TCTCGCTTTCTGTTTT----------------------C--TGATT---TCCGAT---TTCGA-GG----G----CCCTGAGATAATG-----------------------------------------------------ACCACTAATC-GCAACCAACGAT-------------CTC-T-GAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCGCATC---TCCTCCAGAGCCG------------CCGCCTGATGTCCAC------------CAACSizeHit CountTotal NormTotal
No Reads
droTak1
CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACGAGAGGTGGGTAAAT---T-G----GTG------GTT---------------CTTC----A-GTGAAA----------------------------------A----------------------G-------GAAAGGGAAAGTAGAGATTGC-------------------------------GG----------------CTAATAAT-AATGCCGGAGTGGAATTTGGAACCATG-GAA---GT---GGG---------------------------C-----AC-------T--A-------CTAGCGGTATCTCA----------------CTCTCTA------------GTT-TTTTTTGATGAGC---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCACTCTCTCTCTTGACGT-----A------GAGCTTCTGTC----------------TCTCGCTTTCTGTTTTC---------------CGATTTT--TGATT---TCCGAT---TTCGA-GT----AGAG-CCGTGAGATAAT---------------------------------------------------------ACTAATC----------GAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCCCACC---TCCTCCAGAGCCG------------CCGCCTGATGTCCAC------------GAATSizeHit CountTotal NormTotal
No Reads
droEug1
TGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGTACGAGAGGTAGGTTAAC---T-T----GAA------AGA---------------CTTC----T-AA-------------------------------------------------------------GAAAAACGTATAGGGAAAGTAAAAATTGC-------------------------------AA----------------ATTACC------CTTAGAATGAAATTTGTCCCCTTA-GAA---AG---GGG---------------------------T-----AC-------T--GC-----TCAAGCGGTATCTCT----------------TTCTTT------------TATT-TT-CTGGGTGAGC---C---ACCCCCGACGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTGCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTCGA-GG----G----CCCTGAGATAATG-----------------------------------------------------ACAACTAATC-ACCAAAACCGAT-------------CTC-T-TCAC-----CCCACGCAGCCCTACCCA---TTTCGGCCCATC---TCCTCCAAAACCG------------CCGCCTAATGTCCAC------------GACASizeHit CountTotal NormTotal
No Reads
dm3
CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACCAGAGGTGGGTTAAT---T-A----GAA------GTT---------------CTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AG----------------GCCATAAT-TCTTCTACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------T--AC-----TCTAGCGGTATCTCT----------------GTCTCTCTCCCGTTCCCGTGTT------AGCTGAAT---C---TCCCCCGATGCCGCATAACTGGACTTTGAACTTTGTACTC----TCC--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTCGA-GT----G----CCGTGAGATAATG-----------------------------------------------------TGCACTAATC-GCAAACAACAAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCCCAGC---TTCTCCAGAGGCG------------CCGCCTAATGTCCAC------------GAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................CCCGTGTT------AGCTGAAT---C---T.................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCCAGAGGCG------------CCGCCTAATGTC...................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCCGTGTT------AGCTGAAT---C---T.................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCCCGTGTT------AGCTGAAT---C---TCCC..............................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----CCGTGAGATAATG-----------------------------------------------------TGCACT.........................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CCCGTTCCCGTGTT------AGCTGAAT---C---..................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..................................AATAAGTGCACCAGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CCGCCTAATGTCCAC------------GA..1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CTCT----------------GTCTCTCTCCCGTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAGAATAAGTGCACCAGAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGATGCCGCATAACT..............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AG----------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCA---TTTCGGCCCAGC---TTCTCCAGA...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CCCGTGTT------AGCTGAAT---C---TCCC..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AGTGCACCAGAGGTGGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TTCGA-GT----G----CCGTGAGATAATG-----------------------------------------------------TGC............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................................................GAA---AT---GGG---------------------------C-----AG-------T--AC-----TCTAGCGGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT----------------------------------TCCGAT---TTCGA-GT----G----CCGTG............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAACTTTGTACTC----TCC--------CTTGACG....................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCG------------CCGCCTAATGTCCA.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CT----------------GTCTCTCTCCCGTTCCCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CCCGTGTT------AGCTGAAT---C---TC................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.GTTGGCCAAATTTCGCGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGTGTT------AGCTGAAT---C---TCCCC.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTTGGCCAAATTTCGCGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGCCCA---TTTCGGCCCAGC---........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT----------------------------------TCCGAT---TTCGA-GT----G----CCGTGAGAT........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT---TTCGA-GT----G----CCGTGAGATAATG-----------------------------------------------------T..............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----TCC--------CTTGACGT-----A------TAGCTTCT...............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGC---TTCTCCAGAGGCG------------CC.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................GC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CCCGTGTT------AGCTGAAT---C---TCCCC.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........AAATTTCGCGACAGCAATTGCTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................GC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---T.................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGCAATTGCTGCAGAATAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TTTCGGCCCAGC---TTCTCCAG................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGTGTT------AGCTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GGCCAAATTTCGCGACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TACATTGGAATTTGGCCCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTTCTGTC----------------TCTCGCTTTCTGA...............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GCCATAAT-TCTTCTACATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAGGGAAAGTGCAAATTGC-------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCCCGTGTT------AGCTGAAT---C---TC................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............TCGCGACAGCAATTGCTGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GGCCAAATTTCGCGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---TTCTCCAGAGGCG------------CCGCCT.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCA---TTTCGGCCCAGC---TTCTCCAG................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TTCTACATTGGAATTTGGCCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CCCGTGTT------AGCTGAAT---C---TCC...............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TTTCGGCCCAGC---TTCTCC..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........AATTTCGCGACAGCAATTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TCTACATTGGAATTTGGCCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTACTC----TCC--------CTTGACGT-----..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAT-------------CTC-T-TAAC-----CCCACGCAG...................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGCAATTGCTGCAGAATAAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC--------CTTGACGT-----A------TAGCTTC................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGTGTT------AGCTGAAT---C---TCCCCCGAT.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGCAATTGCTGCAGAATAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTTGGCCAAATTTCGCGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CT----------------GTCTCTCTCCCGTTCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droSim2
CGTTGGCCAAATTTCGCGACAGCAATTGTTGCAGAATAAGTGCACAAGAGGTGGGTTAAT---T-G----GAA------GTT---------------CTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AA----------------GCCATAAT----TCCACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGGTATCTCT----------------GTCTCCCTCCCGTTCCCGTGTT------CGCTGAGT---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTAGA-GT----G----CCGTGAGATAATG-----------------------------------------------------TGCACTAATC-GCAAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCCCAGC---TCCTCCAGAGCCG------------CCGCCTAATGTCCAC------------GAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................CCCGTGTT------CGCTGAGT---C---T.................................................................................................................................................................................................................................................................................................................................................................................................1814.00440000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGAT-------------CTC-T-TAAC-----CC..........................................................................................1911.00110000000000000000
.........................................GCACAAGAGGTGGGTTAAT---T-G----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTAGA-GT----G----CCGTGAGATAATG-----------------------------------------------------...............................................................................................................................................2211.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGA-GT----G----CCGTGAGATAATG-----------------------------------------------------TGC............................................................................................................................................2411.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GCAAACAACGAT-------------CTC-T-TAAC-----CC..........................................................................................2311.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGTGTT------CGCTGAGT---C---T.................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TCTAGCGGTATCTCT----------------GTCTCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCAGC---TCCTCCAGAGCCG------------C..............................2311.00100000000000100000
...............................................................................................................................................................................................................................................................................................A---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGGTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.................................................................................T---------------CTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
droSec2
CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACAAGAGGTGGGTTAAT---T-G----GAA------GTT---------------CTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AA----------------GCCATAAT----TCCACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGGTATCTCT----------------GTCTCTCTCCCGTTCCCGTGTT------CGCTGAGT---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------T-------------------------CCGTGAGATAATG-----------------------------------------------------TGCACTAATC-GCAAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCTA---TTTCGGCCCAGC---TCCTCCAGAGCCG------------CCGCCTAATGTCCAC------------GAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................T-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
....GGCCAAATTTCGCGACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---TTTCGGCCCAGC---TCCT....................................................1811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGAGCCG------------CCGCCTA........................1911.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCCG------------CCGCCTAATGTCCAC------------GAG.2611.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA---TTTCGGCCCAGC---TCCTCCAGA...............................................2411.0010100
droYak3
CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACAAGAGGTGGGTTTAT---T-G----GAA------GTT---------------CTTCGGCTT-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAATTGC-------------------------------AG----------------CTAATAAT----TCCACATTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGGTATCTCTGTATCTGTATCTGT--CTCTCTCCCCCCTTACCGTGCT------CGCCGAGA---C---TCCCCCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCTGTC----------------TCTCGCTTTCTGATT----------------------------------TCCGAT---TTCGA-GT----G--T-CCGTGAGATAATG-----------------------------------------------------CCCACTAATC-GCTAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TTTCGGCGCAGC---TCCTCCAGAGTCG------------CCGCCTAATGTCCAC------------GAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCCTGCCCA---TTTCGGCGC..............................................................2111.00101000000000
...............................................................................................................................................................................................................................................................................ATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-GT----G--T-CCGTGAGATAATG-----------------------------------------------------CCCACTAAT......................................................................................................................................2811.00101000000000
..............................................................................................................................................................................................................................................................................................AA---AT---GGG---------------------------C-----AG-------C--AC-----TCTAGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGTGCT------CGCCGAGA---C---TCCCCCGA..........................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGTCG------------CCGCCTAATGTCCAC------------G...2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATAACTGGACTTTGCACT..................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCG------------CCGCCTAATGTCCAC------------GA..2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCGCAGC---TCCTCCAGA...............................................2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---TTTCGGCGCAGC---TCCTCC..................................................2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCG------------CCGCCTAATGTCCAC------------....1911.00101000000000
.....................................................................................................................................................................................................GC-------------------------------AG----------------CTAATAAT----TCCACATTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CCCTTACCGTGCT------CGCCGAGA---C---TCCC..............................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCG------------CCGCCTAATGTCCAC------------G...2011.00101000000000
droEre2
CGTTGGCCAAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACAAGAGGTGGGTTAAT---T-G----GCA------GTT---------------GTGC----T-AT-------------------------------------------------------------G-------AAAAGGGAAAGTGCAAACTGC-------------------------------AG----------------GTAATAAT----TCCACACTGGAATTTGGCCCCTTG-GAA---AT---GGG---------------------------C-----AG-------C--GC-----TCTAGCGGTATCTCTGTATCTGTATCT----GTCTCTCTCCCGTTCCCGTGCT------CGCTC-T---GC---TCCACCGATGCCGCATAACTGGACTTTGCACTTTGTACTC----TCT--------CTTGACGT-----A------TAGCTTCGGTC----------------TCTTGCTTTCTGATTT----------------------C--CGATT---TCTGAT---TTCGA-GT----G----CCGTGAGATAATGCCCTA------------------------------------------------ATCGCTAATC-GCTAACAACGAT-------------CTC-T-TAAC-----CCCACGCAGCCCTGCCCA---TGACGGCGCAGC---TCCTCCAGAGTCG------------CCGCCTAATGTCCTC------------GAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................AAAGGGAAAGTGCAAACTGC-------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................CT------CGCTC-T---GC---TCCACCGA..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.....................GCAATTGCTGCAGAATAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
......................CAATTGCTGCAGAATAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000

Generated: 05/18/2015 at 12:50 AM