ID:

dps_1452

 Coordinate:

4_group2:563016-563166 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.6 -7.4 -7.3

Flybase annnotation

exon [dpse_GLEANR_6787:2]; CDS [Dpse\GA27727-cds]; intron [Dpse\GA27727-in]

No Repeatable elements found

mature
  1. Unknown_singleton_1069:2202-2222 -
  2. dps_1452  4_group2:563016-563036 -
star
  1. 2:14390796-14390816 +
  2. dps_1452  4_group2:563041-563061 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATTTGATGCATTTTGATTGGATTGGCATACAAAGATACGGGTTTCCCAAAAGTTATTCCCTACAATGACGCACAGGTCTCAAAACAAAAACGTAGCCTGCAACCGCAACTGAAAATCGAATATCTTTTATTCTTAATCCCCTGCTGCCGCGAAAAAGAGGCTCGTTGACAGGATGTTGTTGCTGTTGCTCTTATCGCTAGGTACTGGCAGAGGATGATACGACGGATGCTGCTGCGGCTTCTGCTGCTCG
***********************************************************************************************************************************************************(((((...((.((((((....)))))).))...)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M022
male body		 GSM444067
head
 M062
head
 SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................CTAGGTACTGGCAGAGGATGA................................. 21 0 4 4.75 19 19 0 0 0 0 0 0
....................................................................................................................................................................................TGCTGTTGCTCTTATCGCTAG.................................................. 21 0 2 3.00 6 4 0 2 0 0 0 0
.......................................................................................................................................................................................................AGGTACTGGCAGAGGATGATA............................... 21 0 4 3.00 12 8 4 0 0 0 0 0
...........................................................................................................................................................................................................ACTGGCAGAGGATGATACG............................. 19 0 4 2.50 10 0 7 2 0 1 0 0
.....................................................................................................................................................................................................CTAGGTACTGGCAGAGGATG.................................. 20 0 4 2.25 9 9 0 0 0 0 0 0
.................................................................................................................................................................................................................AGAGGATGATACGACGGATG...................... 20 0 4 2.25 9 0 3 0 6 0 0 0
......................................................................................................................................................................................................TAGGTACTGGCAGAGGATGA................................. 20 0 4 2.00 8 8 0 0 0 0 0 0
....................................................................................................................................................................................................GCTAGGTACTGGCAGAGGATG.................................. 21 0 4 2.00 8 8 0 0 0 0 0 0
............................................................................................................................................................................................................................CGACGGATGCTGCTGCGGCTT.......... 21 0 3 1.67 5 0 3 0 2 0 0 0
...................................................................................................................................................................................TTGCTGTTGCTCTTATCGCTA................................................... 21 0 2 1.50 3 2 0 1 0 0 0 0
...................................................................................................................................................................................................CGCTAGGTACTGGCAGAGG..................................... 19 0 4 1.25 5 2 2 0 1 0 0 0
......................................................................................................................................................................................................TAGGTACTGGCAGAGGATGAT................................ 21 0 4 1.00 4 4 0 0 0 0 0 0
...........................................................................................................................................................................................................ACTGGCAGAGGATGATACGAC........................... 21 0 4 1.00 4 0 4 0 0 0 0 0
.....................................................................................................................................................................................GCTGTTGCTCTTATCGCTAGG................................................. 21 0 2 1.00 2 0 0 2 0 0 0 0
..........ATTTTGATTGGATTGGCATAC............................................................................................................................................................................................................................ 21 0 2 1.00 2 2 0 0 0 0 0 0
...........TTTTGATTGGATTGGCATAC............................................................................................................................................................................................................................ 20 0 2 1.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................TCGCTAGGTACTGGCAGAGG..................................... 20 0 4 1.00 4 0 4 0 0 0 0 0
......................................................................................................................................................................................................................ATGATACGACGGATGCTGCTG................ 21 0 4 0.75 3 0 3 0 0 0 0 0
........................................................................................................................................................................................................................GATACGACGGATGCTGCTGC............... 20 0 4 0.75 3 0 2 1 0 0 0 0
................................................................................................................................................................................................................CAGAGGATGATACGACGGAT....................... 20 0 4 0.75 3 2 1 0 0 0 0 0
...........................................................................................................................................................................................................ACTGGCAGAGGATGATACGA............................ 20 0 4 0.75 3 0 3 0 0 0 0 0
................................................................................................................................................................................................................CAGAGGATGATACGACGGATG...................... 21 0 4 0.75 3 0 3 0 0 0 0 0
............................................................................................................................................................................................CTCTTATCGCTAGGTACTGG........................................... 20 0 3 0.67 2 1 0 1 0 0 0 0
.................................................................................................................................................................................................................AGAGGATGATACGACGGATGC..................... 21 0 4 0.50 2 0 1 1 0 0 0 0
.....................................................................................................................................................................................................CTAGGTACTGGCAGAGGA.................................... 18 0 4 0.50 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................TGGCAGAGGATGATACGACGG......................... 21 0 4 0.50 2 0 1 1 0 0 0 0
......................................................................................................................................................................................................................ATGATACGACGGATGCTGC.................. 19 0 4 0.50 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................................AGGTACTGGCAGAGGATGAT................................ 20 0 4 0.50 2 0 2 0 0 0 0 0
......................................................................................................................................................................................CTGCTGCTCTTATCGCTAGG................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................TAGGTACTGGCAGAGGATGAAA............................... 22 1 4 0.50 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATACGACGGATGCTGCTGCG.............. 20 0 4 0.50 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................CGCTAGGTACTGGCAGAGGA.................................... 20 0 4 0.50 2 1 1 0 0 0 0 0
.........CATTTTGATTGGATTGGCATAA............................................................................................................................................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TCGCTAGGTACTGGCAGAGGA.................................... 21 0 4 0.50 2 1 0 0 0 1 0 0
................................................................................................................................................................................TTGTTGCTGTTGCTCTTATCG...................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................................................................................GTTGCTGTTGCTCTTATCG...................................................... 19 0 2 0.50 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................ACGACGGATGCTGCTGCGG............. 19 0 4 0.50 2 0 1 1 0 0 0 0
...........................................................................................................................................................AAGAGGCTCGTTGACAGGATG........................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGATACGACGGATGCTGCTGCG.............. 22 0 4 0.50 2 0 2 0 0 0 0 0
...................................................................................................................................................................................TTGCTGTTGCTCTTATCGCTATT................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
...........................................................................................................................................................................GGATGTTGTTGCTGTTGCTCTTATC....................................................... 25 0 2 0.50 1 0 0 0 1 0 0 0
....................................................................................................................................................................GTTGACAGGATGTTGTTGCTG.................................................................. 21 0 4 0.50 2 0 0 2 0 0 0 0
.........................................................................................................................................................................................................................ATACGACGGATGCTGCTGCGG............. 21 0 4 0.50 2 0 2 0 0 0 0 0
...............................................................................................................................................................................................................GCAGAGGATGATACGACGG......................... 19 0 4 0.50 2 0 1 1 0 0 0 0
.....................................................................................................................................................................................................................GATGATACGACGGATGCTGC.................. 20 0 4 0.50 2 0 2 0 0 0 0 0
....................................................................................................CAACCGCAACTGAAAATCGA................................................................................................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0
..........................................................................................................................................................................AGGATGTTGTTGCTGTTGCTC............................................................ 21 0 3 0.33 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................GCTCTTATCGCTAGGTACTGG........................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................................................................................................CTCTTATCGCTAGGTACTGGC.......................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................CGACGCATGCTGCTGCGGCTTTT........ 23 2 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................TTATCGCTAGGTACTGGCAGAA...................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TTGCTCTTATCGCTAGGTA............................................... 19 0 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................CGGATGCTGCTGCGGCTTC......... 19 0 3 0.33 1 0 0 0 1 0 0 0
................................................................................................................................................................................................TATCGCTAGGTACTGGCAGAG...................................... 21 0 3 0.33 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................TCTTATCGCTAGGTACTGGC.......................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................CAACCGCAACTGAAAATCGAA.................................................................................................................................. 21 0 3 0.33 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................GCTCTTATCGCTAGGTACTG............................................ 20 0 3 0.33 1 0 0 1 0 0 0 0
.............................................................................................................................................................................ATGTTGTTGCTGTTGCTCTTTT........................................................ 22 1 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................TGCTCTTATCGCTAGGTACTG............................................ 21 0 3 0.33 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................TGGCTAGGTACTGGCAGAGG..................................... 20 1 4 0.25 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................TGATACGACGGATGCTGCTGC............... 21 0 4 0.25 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................GCAGAGGATGATACGACGGAT....................... 21 0 4 0.25 1 0 1 0 0 0 0 0
......................................................................................................................................................................TGACAGGATGTTGTTGCT................................................................... 18 0 4 0.25 1 0 0 0 1 0 0 0
........................................................................................................................................................................ACAGGATGTTGTTGCTGTT................................................................ 19 0 4 0.25 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TACGACGGATGCTGCTGCGGC............ 21 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TGTTGTTGCTGTTGCTCTTA......................................................... 20 0 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGACGGATGCTGCTGCGGC............ 20 0 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................GCTAGGTACTGGCAGAGG..................................... 18 0 4 0.25 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................CGACGGATGCTGCTGCGGC............ 19 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................................GACAGGATGTTGTTGCTGTTG............................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CTAGGTACTGGCAGAGGATGAA................................ 22 1 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................................GACAGGATGTTGTTGCTGT................................................................. 19 0 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AGAGGATGATACGACGGATGCT.................... 22 0 4 0.25 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................CTAGGTACTGGCAGAGGATTA................................. 21 1 4 0.25 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................CGACCGATGCTGCTGCGGCT........... 20 1 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CTAGGTACTGGCAGAGGATGT................................. 21 1 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ATGATACGACGGATGCTGCT................. 20 0 4 0.25 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................ATACGACGGATGCTGCTGCA.............. 20 1 4 0.25 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................GATGATACGACGGATGCTG................... 19 0 4 0.25 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................CTGGCAGAGGATGATACGAC........................... 20 0 4 0.25 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................................GATACGACGGATGCTGCTG................ 19 0 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................GAAGATACGACGGATGCTCCTGA............... 23 3 4 0.25 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................AGAGGATGATACGACGGATGT..................... 21 1 4 0.25 1 0 0 0 1 0 0 0
......................................................................................................................................................................................................TAGGTACTGGCAGAGGATG.................................. 19 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGATACGACGGATGCTGCT................. 19 0 4 0.25 1 0 1 0 0 0 0 0
....................................................................................................................................................................GTTGACAGGATGTTGTTGCT................................................................... 20 0 4 0.25 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................GAGGATGATACGACGGATGCTT................... 22 1 4 0.25 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................AGGATGATACGACGGATGCTG................... 21 0 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................................................................................GTTGACAGGATGTTGTTGC.................................................................... 19 0 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................AGATACGACGGATGCTCCTGA............... 21 3 4 0.25 1 0 0 0 0 0 0 1
.........................................................................................................................................................................CAGGATGTTGTTGCTGTTGC.............................................................. 20 0 5 0.20 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CTAGGGACTGGCAGAGGATG.................................. 20 1 5 0.20 1 1 0 0 0 0 0 0
..........................................................................................................................................................................AGGATGTTGTTGCTGTTGC.............................................................. 19 0 5 0.20 1 0 1 0 0 0 0 0
..............................................................................................................................................................................TGTTGTTGCTGTTGCTCTT.......................................................... 19 0 6 0.17 1 0 0 1 0 0 0 0
.............................................................................................................................................................................ATGTTGTTGCTGTTGCTCTTT......................................................... 21 1 6 0.17 1 0 1 0 0 0 0 0
...........................................................................................................................................................................GGATGTTGTTGCTGTTGCTT............................................................ 20 1 6 0.17 1 1 0 0 0 0 0 0
............................................................CTTCAATGAAGCCCAGGTC............................................................................................................................................................................ 19 3 20 0.15 3 0 0 3 0 0 0 0
.....................................................................CGCACAGGTCTCCGAATAAAA................................................................................................................................................................. 21 3 8 0.13 1 0 0 1 0 0 0 0
.........................................................................................................GCAACTGGAAATCGAACAT............................................................................................................................... 19 2 8 0.13 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................GGTGATCCGACGCATGCTGC.................. 20 3 17 0.06 1 0 0 1 0 0 0 0
............TTTGTTGGGATTGGCATA............................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 1 0 0 0
...........................................................................................................................................................................GGATGTTGTTGCTGTTGCTTC........................................................... 21 2 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................................................................CGCTGACGCGAAAAAGAGT.......................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................................................TCCTCTTCTGCCGCTAAAAA.............................................................................................. 20 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

TTAAACTACGTAAAACTAACCTAACCGTATGTTTCTATGCCCAAAGGGTTTTCAATAAGGGATGTTACTGCGTGTCCAGAGTTTTGTTTTTGCATCGGACGTTGGCGTTGACTTTTAGCTTATAGAAAATAAGAATTAGGGGACGACGGCGCTTTTTCTCCGAGCAACTGTCCTACAACAACGACAACGAGAATAGCGATCCATGACCGTCTCCTACTATGCTGCCTACGACGACGCCGAAGACGACGAGC
**************************************************(((((...((.((((((....)))))).))...)))))........*********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V112
male body		 M040
female body
 M059
embryo
 GSM444067
head
 SRR902011
testis
 GSM343916
embryo
 M022
male body
.................................................................................................................................................................................................................................CTACGACGACGCCGAAGACGA..... 21 0 2 3.00 6 6 0 0 0 0 0 0
............................................................................................................................................................................CTACAACAACGACAACGAGAA.......................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................TACTATGCTGCCTACGACGAC................ 21 0 4 0.75 3 3 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATGCTGCCTACGACGACGCCG............ 21 0 4 0.75 3 3 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTGCCTACGACGACGCCGAAG......... 21 0 3 0.67 2 0 1 0 1 0 0 0
..........................................................................................................................................................................................................ATGACCGTCTCCTACTATGC............................. 20 0 3 0.67 2 0 2 0 0 0 0 0
............................................................................................................................................................................................................GACCGTCTCCTACTATGCTGC.......................... 21 0 4 0.50 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................................CCTACTATGCTGCCTACGAC................... 20 0 4 0.50 2 1 0 0 1 0 0 0
..................................................................................................................................................................................................AGCGATCCATGACCGTCTCC..................................... 20 0 4 0.50 2 0 0 0 2 0 0 0
..........................................................................................................................................................................................................................ATGCTGCCTACGACGACGCC............. 20 0 4 0.50 2 1 0 0 0 1 0 0
...............................................................................................................................................................................................................CGTCTCCTACTATGCTGCCTA....................... 21 0 4 0.50 2 2 0 0 0 0 0 0
..........................................................................................................................................GGGGACGACGGCGCTTTTTCTC........................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................CCTACTATGCTGCCTACGACG.................. 21 0 4 0.50 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACTATGCTGCCTACGACGAC................ 20 0 4 0.50 2 2 0 0 0 0 0 0
............................................................................................................................................................TCTCCGAGCAACTGTCCTACA.......................................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................................................................TGGGGACGACGGCGCTTTTTC............................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CCGTCTCCTACTATGCTGCC......................... 20 0 4 0.50 2 2 0 0 0 0 0 0
...............................................................................................................................................................................CAACAACGACAACGAGAATA........................................................ 20 0 2 0.50 1 0 0 0 0 1 0 0
........................................................................................................................................................TTTTTCTCCGAGCAACTGTCCTACAA......................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................CAATCCATGACCGTCTCCTACT................................. 22 1 5 0.40 2 0 0 0 0 2 0 0
....................................................................................TGTTTTTGCATCGGACGTGG................................................................................................................................................... 20 1 3 0.33 1 0 0 1 0 0 0 0
...............................................................................................CGGACGTTGGCGTTGACTTT........................................................................................................................................ 20 0 3 0.33 1 0 0 1 0 0 0 0
................................................................................................................................................................................................ATAGCGATCCATGACCGTCTC...................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................................................................................TCCGAGCAACTGTCCTACAACAACGAC.................................................................. 27 0 3 0.33 1 0 0 1 0 0 0 0
..............................................................................................................................................................TCCGAGCAACTGTCCTACAACAACGA................................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0
.........................................................................GTCCAGAGTTTTGTTTTTGC.............................................................................................................................................................. 20 0 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................AATAGCGATCCATGACCGTCT....................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................CGGACGTTGGCGTTGACTTTTAGCTT.................................................................................................................................. 26 0 3 0.33 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................CATGACCATCTCCTACTATGC............................. 21 1 3 0.33 1 0 0 0 1 0 0 0
.............................................................................AGAGTTTTGTTTTTGCATCGGACGTTG................................................................................................................................................... 27 0 3 0.33 1 0 1 0 0 0 0 0
...................................................................................ATGTTTTTGCATCGGACGTTGGCGTTGA............................................................................................................................................ 28 1 3 0.33 1 0 0 1 0 0 0 0
...................................................................CTGCGTGTCCAGAGTTTTGTTTTTGCAT............................................................................................................................................................ 28 0 3 0.33 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................CATGACCGTCTCCTACTATG.............................. 20 0 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................ACGAGAATAGCGATCCATGA............................................. 20 0 3 0.33 1 1 0 0 0 0 0 0
.................................................................................TTTTGTTTTTGCATCGGA........................................................................................................................................................ 18 0 3 0.33 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................................ATGACCGTCTCCTACTATG.............................. 19 0 3 0.33 1 0 0 0 1 0 0 0
.............................................................................................................................................................CTCCGAGCAACTGTCCTACAA......................................................................... 21 0 3 0.33 1 0 0 1 0 0 0 0
......................................................................CGTGTCCAGAGTTTTGTTTTTGCA............................................................................................................................................................. 24 0 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................CGGACGTTGGCGTTGACTTTTAACTT.................................................................................................................................. 26 1 3 0.33 1 0 0 0 0 1 0 0
............................................................................................................................................................................................GAGAATAGCGATCCATGACC........................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTACTATGCTGCCTACGACGA................. 21 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CCGTCTCCTACTATGCTGCCT........................ 21 0 4 0.25 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................ATCCATGACCGTCTCCTACT................................. 20 0 4 0.25 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................GTCTCCTACTATGCTGCCTACGACGA................. 26 0 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TCTCCTACTATGCTGCCTACGAC................... 23 0 4 0.25 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CTATGCTGCCTACGACGACGC.............. 21 0 4 0.25 1 0 0 0 0 0 0 1
......................................................................................................................................................................................................................TACTATGCTGCCTACGACGACC............... 22 1 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................................................................................GCAACTGTCCTACAACAACGACAACG.............................................................. 26 0 4 0.25 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................GTCTCCTACTATGCTGCCTAC...................... 21 0 4 0.25 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CTACTATGCTGCCTACGACGAC................ 22 0 4 0.25 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................GTCTCCTACTATGCTGCCTA....................... 20 0 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................TGACCGTCTCCTACTATGCT............................ 20 0 4 0.25 1 0 0 0 1 0 0 0
.......................................................................................................................................................................CTGTCCTACAACAACGACAACG.............................................................. 22 0 4 0.25 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................GCGATCCATGACCGTCTCC..................................... 19 0 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TCTCCTACTATGCTGCCTAC...................... 20 0 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................................................GAGCAACTGTCCTACAACAA...................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................................................................................................AACTGTCCTACAACAACGAC.................................................................. 20 0 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTACGACGACGCAGAAGACGACG... 23 1 5 0.20 1 0 0 1 0 0 0 0
.......................................................................................................................TTATCGAAGTTAAGAATTAG................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TGGTAGTATGCTGCCTACGA.................... 20 3 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group2:562966-563216 - dps_1452 AATTTGATGCATTTTGATTGGATTGGCATACAAAGATACGGGTTTCCCAAAAGTTATTCCCTACAATGACGCACAGGTCTCAAAACAAAAACGTAGCCTGCAACCGCAACTGAAAATCGAATATCTTTTA---TTCTTAATCCCCTGCTGCCGCGAAAAAGAGGCTCGTTGAC-AGGATGTTGTTGCTGTTGCTCTTATCGCTAGGTACTGGCAGAGGATGATACGACGGATGCTGCTGCGGCTT--CTGCTGCTCG
droPer2 scaffold_8:3326286-3326536 + AATTTGATGCATTTTGATTGGATTGGCATACAAAGATACGGGTTTCCCAAAAGTTATTCCCTACAATGACGCACAGGTCTCAAAACAAAAACGTAGCCTGCAACCGCAACTGAAAATCGAATATCTTTTA---TTCTTAATCCCTTGCTGCCGCGAAAAAGAGGCTCGTTGAC-AGGATGTTGTTGCTGTTGCTCTCATCGCTAGGTACTGGCAGAGGATGATACGACGGATGCTGCTGCGGCTT--CTGCTGCTCG
droRho1 scf7180000779169:23261-23369 - -------------------------------------------------------------------------------------------------CCGTAGCCACAACTCCAAACTAGACATTCGTTGGCCTCTCTAATCTCCCGCTGCCTCGC-------CGCCGTCGATGT------TGCTGCTGCTGCT------------GACCGGCAGGG---------CCAGGAGTGGTTCC-----------------
droBia1 scf7180000302136:214883-214985 + -------------------------------------------------------------------------------------------------------------------------------------TTTCTAATCTCCAGCTGCAACGC-------CACCGTTGATGAGGCTGCTTCTGCTGCTGCTGTTACTGCTGCCCACCGGCAGGG---------CCAGAAGCGGTTCCGACTT---TGCTACT--
droEug1 scf7180000409798:523002-523127 - -------------------------------------------------------------------------------------------------CCGTAGCCACAACTCTAAACCGAACAATCTTGCGACTCTCTAATCTCCTGCTGCATCGC-------CACCATCGATGT------GGCTACTGCTGCT------------CACCGGCAGGG---------CCAGGAGCGGTTCCGACTTTCCTACTACTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AATTTGATGCATTTTGATTGGATTGGCATACAAAGATACGGGTTTCCCAAAAGTTATTCCCTACAATGACGCACAGGTCTCAAAACAAAAACGTAGCCTGCAACCGCAACTGAAAATCGAATATCTTTTA---TTCTTAATCCCCTGCTGCCGCGAAAAAGAGGCTCGTTGAC-AGGATGTTGTTGCTGTTGCTCTTATCGCTAGGTACTGGCAGAGGATGATACGACGGATGCTGCTGCGGCTT--CTGCTGCTCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................CTAGGTACTGGCAGAGGATGA...................................2144.751900000000190
........................................................................................................................................................................................TGCTGTTGCTCTTATCGCTAG....................................................2123.0060200000040
...........................................................................................................................................................................................................AGGTACTGGCAGAGGATGATA.................................2143.00120000004080
...............................................................................................................................................................................................................ACTGGCAGAGGATGATACG...............................1942.50100200017000
.........................................................................................................................................................................................................CTAGGTACTGGCAGAGGATG....................................2042.2590000000090
.....................................................................................................................................................................................................................AGAGGATGATACGACGGATG........................2042.2596000003000
..........................................................................................................................................................................................................TAGGTACTGGCAGAGGATGA...................................2042.0080000000080
........................................................................................................................................................................................................GCTAGGTACTGGCAGAGGATG....................................2142.0080000000080
................................................................................................................................................................................................................................CGACGGATGCTGCTGCGGCTT--..........2131.6752000003000
.......................................................................................................................................................................................TTGCTGTTGCTCTTATCGCTA.....................................................2121.5030100000020
.......................................................................................................................................................................................................CGCTAGGTACTGGCAGAGG.......................................1941.2551000002020
..........................................................................................................................................................................................................TAGGTACTGGCAGAGGATGAT..................................2141.0040000000040
...............................................................................................................................................................................................................ACTGGCAGAGGATGATACGAC.............................2141.0040000004000
.........................................................................................................................................................................................GCTGTTGCTCTTATCGCTAGG...................................................2121.0020200000000
..........ATTTTGATTGGATTGGCATAC..................................................................................................................................................................................................................................2121.0020000000020
...........TTTTGATTGGATTGGCATAC..................................................................................................................................................................................................................................2021.0020000000020
......................................................................................................................................................................................................TCGCTAGGTACTGGCAGAGG.......................................2041.0040000004000
..........................................................................................................................................................................................................................ATGATACGACGGATGCTGCTG..................2140.7530000003000
............................................................................................................................................................................................................................GATACGACGGATGCTGCTGC.................2040.7530100002000
....................................................................................................................................................................................................................CAGAGGATGATACGACGGAT.........................2040.7530000001020
...............................................................................................................................................................................................................ACTGGCAGAGGATGATACGA..............................2040.7530000003000
....................................................................................................................................................................................................................CAGAGGATGATACGACGGATG........................2140.7530000003000
................................................................................................................................................................................................CTCTTATCGCTAGGTACTGG.............................................2030.6720100000010
.....................................................................................................................................................................................................................AGAGGATGATACGACGGATGC.......................2140.5020100001000
.........................................................................................................................................................................................................CTAGGTACTGGCAGAGGA......................................1840.5020000000020
.................................................................................................................................................................................................................TGGCAGAGGATGATACGACGG...........................2140.5020100001000
..........................................................................................................................................................................................................................ATGATACGACGGATGCTGC....................1940.5020000002000
...........................................................................................................................................................................................................AGGTACTGGCAGAGGATGAT..................................2040.5020000002000
.............................................................................................................................................................................................................................ATACGACGGATGCTGCTGCG................2040.5020000002000
.......................................................................................................................................................................................................CGCTAGGTACTGGCAGAGGA......................................2040.5020000001010
.........CATTTTGATTGGATTGGCATAA..................................................................................................................................................................................................................................2220.5010000000010
......................................................................................................................................................................................................TCGCTAGGTACTGGCAGAGGA......................................2140.5020000010010
....................................................................................................................................................................................TTGTTGCTGTTGCTCTTATCG........................................................2120.5010000001000
......................................................................................................................................................................................GTTGCTGTTGCTCTTATCG........................................................1920.5010100000000
...............................................................................................................................................................................................................................ACGACGGATGCTGCTGCGG...............1940.5020100001000
..............................................................................................................................................................AAGAGGCTCGTTGAC-AGGATG.............................................................................2120.5010000000010
...........................................................................................................................................................................................................................TGATACGACGGATGCTGCTGCG................2240.5020000002000
.......................................................................................................................................................................................TTGCTGTTGCTCTTATCGCTATT...................................................2320.5010100000000
...............................................................................................................................................................................GGATGTTGTTGCTGTTGCTCTTATC.........................................................2520.5011000000000
.......................................................................................................................................................................GTTGAC-AGGATGTTGTTGCTG....................................................................2140.5020200000000
.............................................................................................................................................................................................................................ATACGACGGATGCTGCTGCGG...............2140.5020000002000
...................................................................................................................................................................................................................GCAGAGGATGATACGACGG...........................1940.5020100001000
.........................................................................................................................................................................................................................GATGATACGACGGATGCTGC....................2040.5020000002000
....................................................................................................CAACCGCAACTGAAAATCGA.........................................................................................................................................2030.3310100000000
..............................................................................................................................................................................AGGATGTTGTTGCTGTTGCTC..............................................................2130.3310000001000
...............................................................................................................................................................................................GCTCTTATCGCTAGGTACTGG.............................................2130.3310000000010
................................................................................................................................................................................................CTCTTATCGCTAGGTACTGGC............................................2130.3310000000010
...................................................................................................................................................................................................TTATCGCTAGGTACTGGCAGAA........................................2230.3310000000010
.............................................................................................................................................................................................TTGCTCTTATCGCTAGGTA.................................................1930.3310000001000
...................................................................................................................................................................................................................................CGGATGCTGCTGCGGCTT--C.........1930.3311000000000
....................................................................................................................................................................................................TATCGCTAGGTACTGGCAGAG........................................2130.3310000001000
.................................................................................................................................................................................................TCTTATCGCTAGGTACTGGC............................................2030.3310000000010
....................................................................................................CAACCGCAACTGAAAATCGAA........................................................................................................................................2130.3310100000000
...............................................................................................................................................................................................GCTCTTATCGCTAGGTACTG..............................................2030.3310100000000
..............................................................................................................................................................................................TGCTCTTATCGCTAGGTACTG..............................................2130.3310000001000
...........................................................................................................................................................................................................................TGATACGACGGATGCTGCTGC.................2140.2510000001000
...................................................................................................................................................................................................................GCAGAGGATGATACGACGGAT.........................2140.2510000001000
.........................................................................................................................................................................TGAC-AGGATGTTGTTGCT.....................................................................1840.2511000000000
...........................................................................................................................................................................AC-AGGATGTTGTTGCTGTT..................................................................1940.2510000001000
..............................................................................................................................................................................................................................TACGACGGATGCTGCTGCGGC..............2140.2510000000010
..................................................................................................................................................................................TGTTGTTGCTGTTGCTCTTA...........................................................2040.2510000001000
...............................................................................................................................................................................................................................ACGACGGATGCTGCTGCGGC..............2040.2510000000010
........................................................................................................................................................................................................GCTAGGTACTGGCAGAGG.......................................1840.2510100000000
................................................................................................................................................................................................................................CGACGGATGCTGCTGCGGC..............1940.2510000000010
..........................................................................................................................................................................GAC-AGGATGTTGTTGCTGTTG.................................................................2140.2510000001000
.........................................................................................................................................................................................................CTAGGTACTGGCAGAGGATGAA..................................2240.2510000000010
..........................................................................................................................................................................GAC-AGGATGTTGTTGCTGT...................................................................1940.2510000001000
.....................................................................................................................................................................................................................AGAGGATGATACGACGGATGCT......................2240.2511000000000
.........................................................................................................................................................................................................CTAGGTACTGGCAGAGGATGT...................................2140.2510000000010
..........................................................................................................................................................................................................................ATGATACGACGGATGCTGCT...................2040.2510000001000
.............................................................................................................................................................................................................................ATACGACGGATGCTGCTGCA................2040.2510000010000
.........................................................................................................................................................................................................................GATGATACGACGGATGCTG.....................1940.2510100000000
................................................................................................................................................................................................................CTGGCAGAGGATGATACGAC.............................2040.2511000000000
............................................................................................................................................................................................................................GATACGACGGATGCTGCTG..................1940.2510000001000
.....................................................................................................................................................................................................................AGAGGATGATACGACGGATGT.......................2140.2511000000000
..........................................................................................................................................................................................................TAGGTACTGGCAGAGGATG....................................1940.2510000000010
...........................................................................................................................................................................................................................TGATACGACGGATGCTGCT...................1940.2510000001000
.......................................................................................................................................................................GTTGAC-AGGATGTTGTTGCT.....................................................................2040.2510100000000
......................................................................................................................................................................................................................GAGGATGATACGACGGATGCTT.....................2240.2510100000000
.......................................................................................................................................................................................................................AGGATGATACGACGGATGCTG.....................2140.2510000000010
.......................................................................................................................................................................GTTGAC-AGGATGTTGTTGC......................................................................1940.2510000001000
............................................................................................................................................................................C-AGGATGTTGTTGCTGTTGC................................................................2050.2010000001000
..............................................................................................................................................................................AGGATGTTGTTGCTGTTGC................................................................1950.2010000001000
..................................................................................................................................................................................TGTTGTTGCTGTTGCTCTT............................................................1960.1710100000000
.................................................................................................................................................................................ATGTTGTTGCTGTTGCTCTTT...........................................................2160.1710000001000
...............................................................................................................................................................................GGATGTTGTTGCTGTTGCTT..............................................................2060.1710000000010
...............................................................................................................................................................................GGATGTTGTTGCTGTTGCTTC.............................................................21200.0510000001000
droPer2
AATTTGATGCATTTTGATTGGATTGGCATACAAAGATACGGGTTTCCCAAAAGTTATTCCCTACAATGACGCACAGGTCTCAAAACAAAAACGTAGCCTGCAACCGCAACTGAAAATCGAATATCTTTTA---TTCTTAATCCCTTGCTGCCGCGAAAAAGAGGCTCGTTGAC-AGGATGTTGTTGCTGTTGCTCTCATCGCTAGGTACTGGCAGAGGATGATACGACGGATGCTGCTGCGGCTT--CTGCTGCTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................AGGTACTGGCAGAGGATGATA.................................2121.002000002
.......................................................................................................................................................................GTTGAC-AGGATGTTGTTGCTG....................................................................2130.672000002
.........................................................................................................................................................................................................CTAGGTACTGGCAGAGGATGA...................................2120.501000001
................................................................................................................................................................................................................................CGACGGATGCTGCTGCGGC..............1920.501000010
.........................................................................................................................................................................................................................GATGATACGACGGATGCTGC....................2020.501000001
droRho1
-------------------------------------------------------------------------------------------------CCGTAGCCACAACTCCAAACTAGACATTCGTTGGCCTCTCTAATCTCCCGCTGCCTCGC-------CGCCGTCGATGT------TGCTGCTGCTGCT------------GACCGGCAGGG---------CCAGGAGTGGTTCC-----------------SizeHit CountTotal NormTotal
No Reads
droBia1
-------------------------------------------------------------------------------------------------------------------------------------TTTCTAATCTCCAGCTGCAACGC-------CACCGTTGATGAGGCTGCTTCTGCTGCTGCTGTTACTGCTGCCCACCGGCAGGG---------CCAGAAGCGGTTCCGACTT---TGCTACT--SizeHit CountTotal NormTotal
No Reads
droEug1
-------------------------------------------------------------------------------------------------CCGTAGCCACAACTCTAAACCGAACAATCTTGCGACTCTCTAATCTCCTGCTGCATCGC-------CACCATCGATGT------GGCTACTGCTGCT------------CACCGGCAGGG---------CCAGGAGCGGTTCCGACTTTCCTACTACTCGSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 12:48 AM