ID:

dps_1450

 Coordinate:

4_group2:561498-561648 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.1 -26.5 -26.4

Flybase annnotation

CDS [Dpse\GA27727-cds]; exon [dpse_GLEANR_6787:3]; intron [Dpse\GA27727-in]

No Repeatable elements found

mature
star
  1. Unknown_singleton_1069:2185-2205 -
  2. Unknown_singleton_1069:3589-3609 -
  3. dps_1450  4_group2:561616-561636 -
  4. dps_1452  4_group2:562999-563019 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTTTTCATAATTTCCCTGAGAGTGCTCGTTGACAGGATATTGTTGCGGTTGCTCTTATCGCTAGGTACTGGCAGAGGATGATAAGATTTTGGCAAGGACCTGGTATTATAAGTAAACTAAGGGTGCGTAATGCGCTAGCAGCTGCAGCAGCGACTGCGACTCCGATTGAGACTGCACTGCTGCTGAATGTTCCCAAAAGCTGGCCCTCCAGAAGATCGTCGAGATGCGAAAGAAGATCTTGCTACTGGT
**************************************************************((((((.((.((..(((((......))))).)).)).)))))).................((((.((((.((((((.((....))))).)))..)))))))).......******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M022
male body		 GSM444067
head
 M062
head
 GSM343916
embryo
......................................................................................................................................................AGCGACTGCGACTCCGATTGA................................................................................ 21 0 1 10.00 10 9 0 0 0 1 0 0
...................................................................................................................................................................CCGATTGAGACTGCACTGCT.................................................................... 20 0 3 9.33 28 28 0 0 0 0 0 0
........................................................................................................................................................CGACTGCGACTCCGATTGAG............................................................................... 20 0 3 8.00 24 24 0 0 0 0 0 0
........................................................................................................................................................................TGAGACTGCACTGCTGCTGAA.............................................................. 21 0 1 7.00 7 7 0 0 0 0 0 0
....................................................................................................................................................................CGATTGAGACTGCACTGCTG................................................................... 20 0 3 6.00 18 18 0 0 0 0 0 0
..................................CAGGATATTGTTGCGGTTGCT.................................................................................................................................................................................................... 21 0 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................................................................CAGCAGCGACTGCGACTCCGA.................................................................................... 21 0 1 6.00 6 6 0 0 0 0 0 0
......................................................................................................................................................................ATTGAGACTGCACTGCTGC.................................................................. 19 0 3 5.67 17 17 0 0 0 0 0 0
..............................................................CTAGGTACTGGCAGAGGATGA........................................................................................................................................................................ 21 0 4 4.75 19 19 0 0 0 0 0 0
..................................................................................................................................................................TCCGATTGAGACTGCACTGC..................................................................... 20 0 3 4.33 13 13 0 0 0 0 0 0
.....................................................................................................................................................CAGCGACTGCGACTCCGATTG................................................................................. 21 0 1 4.00 4 3 1 0 0 0 0 0
..................................CAGGATATTGTTGCGGTTGC..................................................................................................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................................................................AGCGACTGCGACTCCGATTG................................................................................. 20 0 1 4.00 4 4 0 0 0 0 0 0
....................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAA.................. 21 0 4 3.75 15 15 0 0 0 0 0 0
.....................................................................................................................................................................GATTGAGACTGCACTGCTGC.................................................................. 20 0 3 3.67 11 11 0 0 0 0 0 0
...................................................................................................................................................................................................................AGAAGATCGTCGAGATGCGAA................... 21 0 4 3.50 14 14 0 0 0 0 0 0
.....................................................................................................................................................CAGCGACTGCGACTCCGATTGA................................................................................ 22 0 1 3.00 3 3 0 0 0 0 0 0
................................................................AGGTACTGGCAGAGGATGATA...................................................................................................................................................................... 21 0 4 3.00 12 8 4 0 0 0 0 0
.........................................................................................................................................................................GAGACTGCACTGCTGCTGAA.............................................................. 20 0 1 3.00 3 3 0 0 0 0 0 0
........................................................................................................................................................................TGAGACTGCACTGCTGCTGA............................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0
.........................................................................................................................................................................................................CTGGCCCTCCAGAAGATCGTC............................. 21 0 1 3.00 3 3 0 0 0 0 0 0
.....................................................................................................................................................................GATTGAGACTGCACTGCTG................................................................... 19 0 3 2.33 7 7 0 0 0 0 0 0
..............................................................CTAGGTACTGGCAGAGGATG......................................................................................................................................................................... 20 0 4 2.25 9 9 0 0 0 0 0 0
.........................................................................................................................................................................GAGACTGCACTGCTGCTGAAT............................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................GCTAGGTACTGGCAGAGGATG......................................................................................................................................................................... 21 0 4 2.00 8 8 0 0 0 0 0 0
...................................AGGATATTGTTGCGGTTGCT.................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................TAGGTACTGGCAGAGGATGA........................................................................................................................................................................ 20 0 4 2.00 8 8 0 0 0 0 0 0
...................................................................................TAAGATTTTGGCAAGGACCTG................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................ACTGGCAGAGGATGATAAGAT.................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................................CGACTGCGACTCCGATTGAGA.............................................................................. 21 0 3 2.00 6 6 0 0 0 0 0 0
..........................................................................................................................................................................AGACTGCACTGCTGCTGAATT............................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................................................................CGATTGAGACTGCACTGCTGC.................................................................. 21 0 3 2.00 6 5 0 1 0 0 0 0
....................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAA................... 20 0 4 2.00 8 8 0 0 0 0 0 0
..........................................................................................................................................................................AGACTGCACTGCTGCTGAATG............................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCCAGAAGATCGTCGAGATG....................... 21 0 4 1.75 7 2 5 0 0 0 0 0
................................................................................................................................................................ACTCCGATTGAGACTGCACTG...................................................................... 21 0 3 1.67 5 5 0 0 0 0 0 0
......................................................................................................................................................................ATTGAGACTGCACTGCTGCTG................................................................ 21 0 3 1.67 5 5 0 0 0 0 0 0
.......................................................................................................................................................................TTGAGACTGCACTGCTGC.................................................................. 18 0 3 1.33 4 4 0 0 0 0 0 0
................................................................................................................................................................................................................TCCAGAAGATCGTCGAGATG....................... 20 0 4 1.25 5 1 3 1 0 0 0 0
............................................................CGCTAGGTACTGGCAGAGG............................................................................................................................................................................ 19 0 4 1.25 5 2 2 0 1 0 0 0
..........................................................................................................................................................................................................TGGCCCTCCAGAAGATCGTCG............................ 21 0 4 1.25 5 3 2 0 0 0 0 0
......................................................................................................................................................AGCGACTGCGACTCCGATTGAG............................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................AGACTGCACTGCTGCTGAAT............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................ATGATAAGATTTTGGCAAGGACCTGG.................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................AGGATGATAAGATTTTGGCAAGGACC..................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................AAGCTGGCCCTCCAGAAGATC................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................CAGGATATTGTTGCGGTTGCTC................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................ATTATAAGTAAACTAAGGGTG............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGAAGATCGTCGAGATGCGA.................... 21 0 4 1.00 4 3 1 0 0 0 0 0
.......................................................................................................................................................................................................................................AAGAAGATCTTGCTACTGGT 20 0 4 1.00 4 4 0 0 0 0 0 0
.................................................................................................................................................................CTCCGATTGAGACTGCACTGC..................................................................... 21 0 3 1.00 3 3 0 0 0 0 0 0
...............................................................TAGGTACTGGCAGAGGATGAT....................................................................................................................................................................... 21 0 4 1.00 4 4 0 0 0 0 0 0
....................................................................ACTGGCAGAGGATGATAAG.................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................GCTGGCCCTCCAGAAGATCG............................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...................................AGGATATTGTTGCGGTTGCTC................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................GCTGAATGTTCCCAAAAGCTG............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................GTTGACAGGATATTGTTGCGG......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................TTATAAGTAAACTAAGGGTGC........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................TGAGACTGCACTGCTGCTGAATATTG......................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................AGGATGATAAGATTTTGGCAA.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................CCAAAAGCTGGCCCTCCAGA..................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
..............................TTGACAGGATATTGTTGCGG......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGAAGATCGTCGAGATGCGAA................... 22 0 4 1.00 4 4 0 0 0 0 0 0
....................................................................................................................................................................CGATTGAGACTGCACTGC..................................................................... 18 0 3 1.00 3 3 0 0 0 0 0 0
..............................................................................................CAAGGACCTGGTATTATAAG......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................TGATAAGATTTTGGCAAGGAC...................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGCTGGCCCTCCAGAAGATCGTC............................. 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................ATTGTTGCGGTTGCTCTTATC.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................GATGATAAGATTTTGGCAAGGACCTG................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
......................................ATATTGTTGCGGTTGCTCTTA................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................GCAGCAGCGACTGCGACTCC...................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................TCCGATTGAGACTGCACTGCTG................................................................... 22 0 3 1.00 3 3 0 0 0 0 0 0
...................................AGGATATTGTTGCGGTTGC..................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................AGGTACTGGCAGAGGATGATAA..................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
....................................GGATATTGTTGCGGTTGCTC................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................GATGATAAGATTTTGGCAAGGACCTGG.................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................TTGTTGCGGTTGCTCTTATCGC............................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TTGAGACTGCACTGCTGCTGA............................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................ACTGCTGCTGAATGTTCCC....................................................... 19 0 3 1.00 3 2 0 0 1 0 0 0
...........................................................TCGCTAGGTACTGGCAGAGG............................................................................................................................................................................ 20 0 4 1.00 4 0 4 0 0 0 0 0
...............................................................................................AAGGACCTGGTATTATAAGTA....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................TAGCAGCGACTGCGACTCCGA.................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGTCGAGATGCGAAAGAAGA............. 20 0 4 0.75 3 0 3 0 0 0 0 0
.................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGC...................... 20 0 4 0.75 3 0 2 0 1 0 0 0
.........................................................................................................................................................................................................................TCGTCGAGATGCGAAAGAAG.............. 20 0 4 0.75 3 3 0 0 0 0 0 0
................................................................................................................................................................ACTCCGATTGAGACTGCACTGC..................................................................... 22 0 3 0.67 2 2 0 0 0 0 0 0
..................................................................................................................................................................TCCGATTGAGACTGCACTGCT.................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0
.......................................................................................................................................................................TTGAGACTGCACTGCTGCT................................................................. 19 0 3 0.67 2 2 0 0 0 0 0 0
.....................................................CTCTTATCGCTAGGTACTGG.................................................................................................................................................................................. 20 0 3 0.67 2 1 0 1 0 0 0 0
...................................................................................................................................................................CCGATTGAGACTGCACTGC..................................................................... 19 0 3 0.67 2 2 0 0 0 0 0 0
...................................................................................................................................................................CCGATTGAGACTGCACTGCTG................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0
................................................................................................................................................................................CACTGCTGCTGAATGTTCCC....................................................... 20 0 3 0.67 2 0 1 0 0 0 1 0
....................................................................................................................................................................................................................GAAGATCGTCGAGATGCGA.................... 19 0 4 0.50 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCCAGAAGATCGTCGAGATGCGA.................... 24 0 4 0.50 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAAA................. 22 1 4 0.50 2 2 0 0 0 0 0 0
....................AGAGTGCTCGTTGACAGGA.................................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 1 0 0 0
................................................................AGGTACTGGCAGAGGATGAT....................................................................................................................................................................... 20 0 4 0.50 2 0 2 0 0 0 0 0
.....................................................................................................................................................................................................................................GAAAGAAGATCTTGCTACTG.. 20 0 4 0.50 2 0 0 1 0 1 0 0
.............................................................................................................................................................................................................................CGAGATGCGAAAGAAGATCT.......... 20 0 4 0.50 2 1 1 0 0 0 0 0
........................................................................................................................................................................................................................ATCGTCGAGATGCGAAAGAA............... 20 0 4 0.50 2 0 2 0 0 0 0 0
..................................................................................................................TAAACTAAGGGTGCGTAATG..................................................................................................................... 20 0 4 0.50 2 1 1 0 0 0 0 0
............................................................................................................................................................................................................................TCGAGATGCGAAAGAAGATC........... 20 0 4 0.50 2 2 0 0 0 0 0 0
............................................................CGCTAGGTACTGGCAGAGGA........................................................................................................................................................................... 20 0 4 0.50 2 1 1 0 0 0 0 0
..................................................................................................................................................................................................................CAGAAGATCGTCGAGATGC...................... 19 0 4 0.50 2 0 0 0 2 0 0 0
..............................................................CTAGGTACTGGCAGAGGA........................................................................................................................................................................... 18 0 4 0.50 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................................CCAGAAGATCGTCGAGATG....................... 19 0 4 0.50 2 0 1 1 0 0 0 0
....................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAAGAAGA............. 26 0 4 0.50 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................CCTCCAGAAGATCGTCGAGATGCGAAAG................. 28 0 4 0.50 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................................AGAAGATCGTCGAGATGCG..................... 19 0 4 0.50 2 2 0 0 0 0 0 0
................................................................................................................AGTAAACTAAGGGTGCGTAAT...................................................................................................................... 21 0 4 0.50 2 1 1 0 0 0 0 0
....................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAAG................. 22 0 4 0.50 2 2 0 0 0 0 0 0
...............................................................TAGGTACTGGCAGAGGATGAAA...................................................................................................................................................................... 22 1 4 0.50 2 2 0 0 0 0 0 0
.................ACGAGAGTGCTCGTTGACAG...................................................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0
...........................................................TCGCTAGGTACTGGCAGAGGA........................................................................................................................................................................... 21 0 4 0.50 2 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................GCGAAAGAAGATCTTGCTAC.... 20 0 4 0.50 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAGATGCGAAAGAAGATCTTG........ 21 0 4 0.50 2 0 1 1 0 0 0 0
.......................................................................................................................................................GCGACTGCGACTCCGATTGA................................................................................ 20 0 5 0.40 2 2 0 0 0 0 0 0
........................................................................................................................................................CGACTGCGACTCCGATTGA................................................................................ 19 0 5 0.40 2 2 0 0 0 0 0 0
.....................................................CTCTTATCGCTAGGTACTGGC................................................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TTGAGACTGCACTGCTGCTG................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
....................................................GCTCTTATCGCTAGGTACTGG.................................................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................................GACTCCGATTGAGACTGCAC........................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................................................................................ACTGCTGAATGTTCCCAAAAG.................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................................................................CTGCGACTCCGATTGAGACTG........................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................................CGACCGCGACTCCGATTGAG............................................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................................................CTCCGATTGAGACTGCACTGCTG................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0
..................................................TTGCTCTTATCGCTAGGTA...................................................................................................................................................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0
...................................................................................................................................................................CCGATTGAGACTGCACTGCTA................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................................................ACTGCGACTCCGATTGAGACTGCA......................................................................... 24 0 3 0.33 1 0 1 0 0 0 0 0
...................................................................................................................................................................................TGCTGCTGAATGTTCCCAAA.................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
...................................................TGCTCTTATCGCTAGGTACTG................................................................................................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0
..............................................................................................................................................................CGACTCCGATTGAGACTGCA......................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
....................................................GCTCTTATCGCTAGGTACTG................................................................................................................................................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0
..............................................................................................................................................................................TGCACTGCTGCTGAATGTT.......................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
......................................................TCTTATCGCTAGGTACTGGC................................................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................TATCGCTAGGTACTGGCAGAG............................................................................................................................................................................. 21 0 3 0.33 1 0 1 0 0 0 0 0
........................................................TTATCGCTAGGTACTGGCAGAA............................................................................................................................................................................. 22 1 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................TCCAGAAGATCGTCGAGATGC...................... 21 0 4 0.25 1 0 1 0 0 0 0 0
..............................................................CTAGGTACTGGCAGAGGATGAA....................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGCGAAAG................. 25 0 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAAGAAGATCTTGCTACT... 18 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................ATCGTCGAGATGCGAAAGAAGATC........... 24 0 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGAGATGCGAAAGAAGGTCT.......... 20 1 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGCG..................... 21 0 4 0.25 1 0 1 0 0 0 0 0
........................................................................................................................................................CGACTGCGACTCCGATTGAGAT............................................................................. 22 1 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................................AAACTAAGGGTGCGTAATGCG................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATGCGAAAGAAGATCTTGCTA..... 21 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................AGAGGATGGCAAGATTTTG.............................................................................................................................................................. 19 2 4 0.25 1 0 1 0 0 0 0 0
..................................................................................................................TAAACTAAGGGTGCGTAATGCG................................................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGCC..................... 21 1 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAAGAAGATCTTGCTACTGG. 20 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................CTAGGTACTGGCAGAGGATGT........................................................................................................................................................................ 21 1 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGAGATGCGAAAGAAGATCTTG........ 22 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGCCCTCCAGAAGATCGTCGA........................... 21 0 4 0.25 1 1 0 0 0 0 0 0
................................................................................................................AGTAAACTAAGGGTGCGTAA....................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGCCCTCCAGAAGATCGTCG............................ 20 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................TAAGTAAACTAAGGGTGCG.......................................................................................................................... 19 0 4 0.25 1 0 1 0 0 0 0 0
............................................................................................................................GTGCGTAATGCGCTAGCAGCT.......................................................................................................... 21 0 4 0.25 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................TCGTCGAGATGCGAAAGAA............... 19 0 4 0.25 1 1 0 0 0 0 0 0
...............................................................TAGGTACTGGCAGAGGATG......................................................................................................................................................................... 19 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................TAAGTAAACTAAGGGCGCGTA........................................................................................................................ 21 1 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTCGAGATGCGAAAGAAGA............. 19 0 4 0.25 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................TCCAGAAGATCGTCGAGAT........................ 19 0 4 0.25 1 0 1 0 0 0 0 0
....................................................................................................................AACTAAGGGTGCGTAATGCG................................................................................................................... 20 0 4 0.25 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CCTCCAGAAGATCGTCG............................ 17 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................ATCGTCGAGATGCGAAAGAAG.............. 21 0 4 0.25 1 0 0 0 0 1 0 0
.............................................................................................................................................................................................................CCCTCCAGAAGATCGTCG............................ 18 0 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTACT... 20 0 4 0.25 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................TGCGAAAGAAGATCTTGCTA..... 20 0 4 0.25 1 0 1 0 0 0 0 0
...........................................................TGGCTAGGTACTGGCAGAGG............................................................................................................................................................................ 20 1 4 0.25 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTACTAT. 22 2 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................AGAAGATCGTCGAGATGC...................... 18 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAGATGCGAAAGAAGATCTT......... 20 0 4 0.25 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................CAGAAGATCGTCGAGATGCG..................... 20 0 4 0.25 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTAC.... 19 0 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................AGAAGATCGTCGAGATGCGA.................... 20 0 4 0.25 1 0 0 0 1 0 0 0
...................................................................................................................AAACTAAGGGTGCGTAGTGCG................................................................................................................... 21 1 4 0.25 1 0 0 0 0 1 0 0
.............................................................GCTAGGTACTGGCAGAGG............................................................................................................................................................................ 18 0 4 0.25 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................AAGAAGATCTTGCTACTGG. 19 0 4 0.25 1 0 0 0 1 0 0 0
..............................................................................................................TAAGTAAACTAAGGGTGCGTA........................................................................................................................ 21 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................CTAGGTACTGGCAGAGGATTA........................................................................................................................................................................ 21 1 4 0.25 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CCTCCAGAAGATCGTCGAGA......................... 20 0 4 0.25 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TCGAGATGCGAAAGAAGATCTTTCTA..... 26 1 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGAGATGCGAAAGAAGATCT.......... 21 0 4 0.25 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................TCCAGAAGATCGTCGAGATGTTT.................... 23 3 4 0.25 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTACTG.. 21 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CCTCCAGAAGATCGTCGAGATG....................... 22 0 4 0.25 1 0 1 0 0 0 0 0
..............................................................CTAGGGACTGGCAGAGGATG......................................................................................................................................................................... 20 1 5 0.20 1 1 0 0 0 0 0 0
.............................................................................................................................................................................CTGCACTGCTGCTGAATGTTCTTT...................................................... 24 3 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................CGACTGCGACTCCGATTG................................................................................. 18 0 6 0.17 1 1 0 0 0 0 0 0
.....................................GATATTGGTGCGGTTGCC.................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................AAGGAGAGCGTGCTACTGGT 20 3 10 0.10 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................TAAAGAAGACCGTGCTACTG.. 20 3 13 0.08 1 0 1 0 0 0 0 0
.........................................................................TAGAGGATGGCAAGATTTTG.............................................................................................................................................................. 20 3 14 0.07 1 0 0 1 0 0 0 0
................................................................................TGATACGATTTTGGCAAC......................................................................................................................................................... 18 2 14 0.07 1 0 0 1 0 0 0 0
..........................................................................................................................................AGCAGCTGCAGCAGGGAC............................................................................................... 18 1 16 0.06 1 0 0 0 0 0 0 1
......................................ATATTATGGTGGTTGCTCTT................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................ATCAGGATGCGAAAGAAGAT............ 20 3 18 0.06 1 0 0 1 0 0 0 0

Anti-sense strand reads

AAAAAAAGTATTAAAGGGACTCTCACGAGCAACTGTCCTATAACAACGCCAACGAGAATAGCGATCCATGACCGTCTCCTACTATTCTAAAACCGTTCCTGGACCATAATATTCATTTGATTCCCACGCATTACGCGATCGTCGACGTCGTCGCTGACGCTGAGGCTAACTCTGACGTGACGACGACTTACAAGGGTTTTCGACCGGGAGGTCTTCTAGCAGCTCTACGCTTTCTTCTAGAACGATGACCA
********************************************************************************((((((.((.((..(((((......))))).)).)).)))))).................((((.((((.((((((.((....))))).)))..)))))))).......************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M022
male body		 M062
head
 GSM444067
head
 M059
embryo
..................................................................................................................................................................................GACGACGACTTACAAGGGTTT.................................................... 21 0 3 7.00 21 21 0 0 0 0 0 0
..................................................................................................................................................................................GACGACGACTTACAAGGGTT..................................................... 20 0 3 6.33 19 17 2 0 0 0 0 0
.............................................................................................................................................................................................................GGGAGGTCTTCTAGCAGCTCT......................... 21 0 4 2.25 9 4 5 0 0 0 0 0
............................................................................................................................................................................................................CGGGAGGTCTTCTAGCAGCT........................... 20 0 4 2.25 9 5 3 0 1 0 0 0
............................................................................................................................................................................................................CGGGAGGTCTTCTAGCAGC............................ 19 0 4 2.00 8 8 0 0 0 0 0 0
................................................................................................................................................................................GTGACGACGACTTACAAGGGT...................................................... 21 0 3 2.00 6 6 0 0 0 0 0 0
................................................................................................................................................................................................................AGGTCTTCTAGCAGCTCTAC....................... 20 0 4 1.50 6 4 2 0 0 0 0 0
..................................................................CATGACCGTCTCCTACTATTC.................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................GGTCTTCTAGCAGCTCTAC....................... 19 0 4 1.00 4 4 0 0 0 0 0 0
...............................................................................................................................................................................................................GAGGTCTTCTAGCAGCTCT......................... 19 0 4 1.00 4 3 0 0 1 0 0 0
...........................................................................................................................................................................................................CCGGGAGGTCTTCTAGCAG............................. 19 0 4 0.75 3 0 1 1 1 0 0 0
..................................................................................................................................................................................................................GTCTTCTAGCAGCTCTACGCT.................... 21 0 4 0.75 3 3 0 0 0 0 0 0
............................................................................................................................................................................................................CGGGAGGTCTTCTAGCAGCTC.......................... 21 0 4 0.75 3 3 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTTCTAGCAGCTCTACGCTT................... 22 0 4 0.75 3 3 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGAGGTCTTCTAGCAGCT........................... 19 0 4 0.75 3 2 1 0 0 0 0 0
...........................................................................................................................................................................................................CCGGGAGGTCTTCTAGCAGC............................ 20 0 4 0.50 2 1 0 0 1 0 0 0
............................................................................................................................................................................................................CGGGAGGTCTTCTAGCAGCTCT......................... 22 0 4 0.50 2 1 1 0 0 0 0 0
...........................................................AGCGATCCATGACCGTCTCC............................................................................................................................................................................ 20 0 4 0.50 2 0 0 0 0 0 2 0
............................................................................................................................................................................................................TGGGAGGTCTTCTAGCAGCTCT......................... 22 1 4 0.50 2 2 0 0 0 0 0 0
...........................................................................................................................................................................................................CCGGGAGGTCTTCTAGCAGCT........................... 21 0 4 0.50 2 0 1 0 1 0 0 0
.......................................................................................................................................................................................................................CTAGCAGCTCTACGCTTTCT................ 20 0 4 0.50 2 0 2 0 0 0 0 0
..................................................................................................................................................................................................................................ACGCTTTCTTCTAGAACGAT..... 20 0 4 0.50 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGAGGTCTTCTAGCAGC............................ 18 0 4 0.50 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................................GGTCTTCTAGCAGCTCTACGCT.................... 22 0 4 0.50 2 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTAGCAGCTCTACGCTTTCTT............... 21 0 4 0.50 2 0 2 0 0 0 0 0
.............................................................CAATCCATGACCGTCTCCTACT........................................................................................................................................................................ 22 1 5 0.40 2 2 0 0 0 0 0 0
................................................................................................................................................................................TTGACGACGACTTACAAGGGTA..................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................................................................................AAGACGACGACTTACAAGGGT...................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................................................................................CGACGACTTACAAGGGTTTT................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................................................GAGGCTAACTCTGACGTGAC...................................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0
........................................................AATAGCGATCCATGACCGTCT.............................................................................................................................................................................. 21 0 3 0.33 1 0 1 0 0 0 0 0
..................................................................................................................................................................................GACGACGACTTACAAGGGT...................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................................................CGTGACGACGACTTACAAGG........................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................................................................................GGGACGACGACTTACAAGGGT...................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
...................................................ACGAGAATAGCGATCCATGA.................................................................................................................................................................................... 20 0 3 0.33 1 0 1 0 0 0 0 0
...................................................................................................................................................................................ACGACGACTTACAAGGGT...................................................... 18 0 3 0.33 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................GACGACTTACAAGGGTTTT................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0
................................................................................................................................................................................GTGACGACGACTTACAAGGGTTT.................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................................................................................GCTGAGGCTAACTCTGACGTG........................................................................ 21 0 3 0.33 1 0 1 0 0 0 0 0
............................................................................................................................................................................TGACGTGACGACGACTTACAA.......................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0
................................................................................................................................................................................GTGACGACGACTTACAAGGG....................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................ATAGCGATCCATGACCGTCTC............................................................................................................................................................................. 21 0 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................................................................................CGACGACTTACAAGGGTTT.................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TGACGACGACTTACAAGGGTT..................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................................................................GACGTGACGACGACTTACAAGGGTTT.................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................GAGAATAGCGATCCATGACC.................................................................................................................................................................................. 20 0 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................................................................................AGACGACTTACAAGGGTTTT................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0
...................................................................................................................................................................................ACGACGACTTACAAGGGTTT.................................................... 20 0 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TTCTTCTAGAACGATGACCA 20 0 4 0.25 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................GCTTTCTTCTAGAACGATG.... 19 0 4 0.25 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................GCTTTCTTCTAGAACGATGA... 20 0 4 0.25 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................AGCAGCTCTACGCTTTCTTCT............. 21 0 4 0.25 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................TTTCTTCTAGAACGATGACCA 21 0 4 0.25 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................AGGGAGGTCTTCTAGCAGCT........................... 20 1 4 0.25 1 1 0 0 0 0 0 0
............................................................GCGATCCATGACCGTCTCC............................................................................................................................................................................ 19 0 4 0.25 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................CGGGAGGTCTTCTAGCAGCTCTACGC..................... 26 0 4 0.25 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................AGGTCTTCTAGCAGCTCTA........................ 19 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................CCCGGGAGGTCTTCTAGCAG............................. 20 1 4 0.25 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TCTAGCAGCTCTACGCTTTC................. 20 0 4 0.25 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................CGCAGCTCTACGCTTTCTTC.............. 20 1 4 0.25 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................CCTAGCAGCTCTACGCTTTCTT............... 22 1 4 0.25 1 0 1 0 0 0 0 0
...............................................................ATCCATGACCGTCTCCTACT........................................................................................................................................................................ 20 0 4 0.25 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................CGGGAGATCTTCTAGCAGCTC.......................... 21 1 4 0.25 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TCTTCTAGCAGCTCTACGCTT................... 21 0 4 0.25 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GCTCTACGCTTTCTTCTAG........... 19 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................CCGGGAGGTCTTCTAGCAGCTCT......................... 23 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................AGAGGTCTTCTAGCAGCTCTAC....................... 22 1 4 0.25 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................TCTACGCTTTCTTCTAGAAC........ 20 0 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................ATTACGCAATCGACGTCGT....................................................................................................... 19 3 20 0.25 5 0 0 5 0 0 0 0
.............................................................................................................................................................................................................GGGCGGTCTTCTAGCAGCTCT......................... 21 1 4 0.25 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................GGGAGGTCTTCTAGCAGCTC.......................... 20 0 4 0.25 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................AGCAGCTCTACGCTTTCTTC.............. 20 0 4 0.25 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................................GGAGGTCTTCTAGCAGCTCT......................... 20 0 4 0.25 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................AGGGAGGTCTTCTAGCAGC............................ 19 1 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................AGCTCTACGCTTTCTTCTAGAA......... 22 0 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GGTCTTCTAGCAGCTCTACGCTT................... 23 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTCTACGCTTTCTTCTAGAAC........ 21 0 4 0.25 1 0 0 1 0 0 0 0
.................................................................................................................CATTTGATTCCCACGCATTAC..................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0
..................................................................................................................................................................................GACGACGACTTACAAGCGTTT.................................................... 21 1 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................CGCTGACGCTGAGGCTAACT................................................................................ 20 0 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................CGGAAGGCCTTCTAGCAG............................. 18 2 5 0.20 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................GGTTTTCTAGCAGGTCTATGCTTT.................. 24 3 5 0.20 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTAGCAGCTTTACGCTTTG................. 19 2 6 0.17 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................CCGGGTGTTATTCTAGCAGC............................ 20 3 13 0.15 2 0 0 0 0 1 0 1
.........................................................................................................................................................................CTCTGACGTAACCACGACTA.............................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0
....................................................................................................................................................CGTAGTTGACGCTGAGGC..................................................................................... 18 2 15 0.07 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................CCGGTAGGACTGCTAGCAGC............................ 20 3 15 0.07 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................GAGCAGTTCTAGCAGCTCTA........................ 20 3 19 0.05 1 0 0 0 0 1 0 0
AAAAAAAGTATTCATGTGAC....................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0
..AAAAAGAATTAACGGGAATC..................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group2:561448-561698 - dps_1450 TTTTTTTCATAATTTCCCTGAGAGTG---CTCGTTGACA---GGATATTGTTGC---GGTTGCTCTTATCGCTAGGTACTGGCAGAGGATGATAAGA-----------------------------TTTTGGCAAGGACCTGGTATTATAAGTAAACTAAGGGTGCGTAATGCGCTAGCAGCTGCAGCAGCGACTGCGACTCCGATTGAGACTG--------------CACTGCTGCTGAATGTTCC-CAAAAGCTGGCCCTCCAGAAGATCGTCGAGATGCGAAAGAAGATCTTGCTACTGGT
droPer2 scaffold_8:3326446-3326700 + G----------------------------CTCGTTGACA---GGATGTTGTTGC---TGTTGCTCTCATCGCTAGGTACTGGCAGAGGATGATACGACGGATGCTGCTGCGGCTTCTGCTGCTCGGTTTTGGCAAGGACCTGGTATTCTAAGTAAACTAAAGGTGCGTAATGCGCTAGCAGCTGCAGCTGCGACTGCGACTCCGATTGAGACCG--------------CACTGCTGCTGAATGTTCC-CAAAAGATGGCCCTCCAGAAGATCGTCGAGATGCGAAAGAAGATCTTGCTACTGGT
droMoj3 scaffold_6424:6138-6185 - A----------------------------GCAGC-----TGCGGCGGCG---GCTGCTGCTGCT--------------------------------------------------------------------------------------------------------------------------------------------GCTGCGACTG--------------C-CTGCTGCTG-----------------------------------------------------------------
droAna3 scaffold_13337:492181-492225 + C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAGAAGGTGTCCGAGATGCGCAGGAAGATCACTAGGTTGGT
droBip1 scf7180000395155:267439-267486 - G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCCCAGAAAGTGTCCGAGATGCGCAGGAAGATCAACAGGCTGGT
droKik1 scf7180000302441:1293415-1293455 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGGTGTCCGAGGTGCGCAGGAAGATCAACCGATTGGT
droFic1 scf7180000454105:782527-782611 + A----------------------------GCACC-----TGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------GCTGC-------------------------------------------CGCAGGA------CGAGGAGCGGGCTCCGCCGCGGGTGTCCGAGATGCGCAGGAAGATCACGCGACTGGT
droEle1 scf7180000491249:2961206-2961337 - G----------------------------CTAAC-----A--------A---ATGG--------------------------------------------------------------------------------------------------------------------------------CACCAGCGACAGTGGCTCGGATTCGGGCAAGGAAAACTGTGCCTCCAATCAGCAGGAAAATCGAGAGGAGGAGGCTCCCCCGAGGGTGTCCGAAATGCGGAGGAAGATCAATCGACTGGT
droRho1 scf7180000780275:135246-135275 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGCAGGAAGATCACCCGGCTGGT
droBia1 scf7180000302136:214909-215075 + C----------------------------GTTGA-----TGAGGCTGCTTCTGC---TGCTGCTGTTACTGCTGCCCACCGGCAGGGCCAGAAGCGG------------------------TTCCGACTTTGCTACTACCCGGTATTGTACGTAACCTAAACGTGCGTAATGCGTTTGCGATTGCAACTG---CTGCAGTTGCGGCAGATGGTG--------------CAGCAGTGGT------------------------------------------------------------GGTTGT
droTak1 scf7180000415857:203974-204017 + C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCGAGTATCCGAGATGAGGAGGAAGATCAGTCGATTGGT
droEug1 scf7180000409466:184904-185006 + A----------------------------GCAGC-----CGCAGCAAGA---GCCGCACCAGCA--------------------------------------------------------------------------------------------------------------------ACAGCAGCAGC-------------------------------------------AGCTAGA------TGAGGATCGAGCTCCGCCAAAAGTGTCAGAGATGCGCCGGAAGATCAACAGACTGGT
dm3 chr3L:2463817-2463846 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGGAGGAAAATCAGCCGACTGGT
droSim2 3l:2351379-2351408 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGGAGGAAAATCAGCCGACTGGT
droSec2 scaffold_2:2485511-2485540 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGAAGGAAAATTAGCCGACTGGT
droYak3 3L:9478238-9478281 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCCAGAGTGTCCGAGATGAGGAGGAAAATCAGCCGACTGGT
droEre2 scaffold_4784:2470679-2470786 + GCA-----------------------GGAGCATC-----TGCAGCACCA---GCCGAGCCAGCA--------------------------------------------------------------------------------------------------------------------GACCCAGCAGT-------------------------------------------CGCAGGA------TGAGGATCGAGCTCCGCCCAGGGTGTCCGAGATGCGGAGGAAAATCAGCCGACTGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTTTTTTCATAATTTCCCTGAGAGTG---CTCGTTGACA---GGATATTGTTGC---GGTTGCTCTTATCGCTAGGTACTGGCAGAGGATGATAAGA-----------------------------TTTTGGCAAGGACCTGGTATTATAAGTAAACTAAGGGTGCGTAATGCGCTAGCAGCTGCAGCAGCGACTGCGACTCCGATTGAGACTG--------------CACTGCTGCTGAATGTTCC-CAAAAGCTGGCCCTCCAGAAGATCGTCGAGATGCGAAAGAAGATCTTGCTACTGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................AGCGACTGCGACTCCGATTGA...............................................................................................21110.00100000010090
.........................................................................................................................................................................................................CCGATTGAGACTG--------------CACTGCT.....................................................................2039.332800000000280
..............................................................................................................................................................................................CGACTGCGACTCCGATTGAG..............................................................................................2038.002400000000240
..............................................................................................................................................................................................................TGAGACTG--------------CACTGCTGCTGAA...............................................................2117.0070000000070
..........................................................................................................................................................................................................CGATTGAGACTG--------------CACTGCTG....................................................................2036.001800000000180
.....................................CA---GGATATTGTTGC---GGTTGCT................................................................................................................................................................................................................................................2116.0060000000060
........................................................................................................................................................................................CAGCAGCGACTGCGACTCCGA...................................................................................................2116.0060000000060
............................................................................................................................................................................................................ATTGAGACTG--------------CACTGCTGC...................................................................1935.671700000000170
.......................................................................CTAGGTACTGGCAGAGGATGA....................................................................................................................................................................................................................2144.751900000000190
........................................................................................................................................................................................................TCCGATTGAGACTG--------------CACTGC......................................................................2034.331300000000130
...........................................................................................................................................................................................CAGCGACTGCGACTCCGATTG................................................................................................2114.0040000001030
.....................................CA---GGATATTGTTGC---GGTTGC.................................................................................................................................................................................................................................................2014.0040000000040
............................................................................................................................................................................................AGCGACTGCGACTCCGATTG................................................................................................2014.0040000000040
.........................................................................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAA..................2143.751500000000150
...........................................................................................................................................................................................................GATTGAGACTG--------------CACTGCTGC...................................................................2033.671100000000110
........................................................................................................................................................................................................................................................................AGAAGATCGTCGAGATGCGAA...................2143.501400000000140
...........................................................................................................................................................................................CAGCGACTGCGACTCCGATTGA...............................................................................................2213.0030000000030
.........................................................................AGGTACTGGCAGAGGATGATA..................................................................................................................................................................................................................2143.00120000004080
...............................................................................................................................................................................................................GAGACTG--------------CACTGCTGCTGAA...............................................................2013.0030000000030
..............................................................................................................................................................................................................TGAGACTG--------------CACTGCTGCTGA................................................................2013.0030000000030
..............................................................................................................................................................................................................................................................CTGGCCCTCCAGAAGATCGTC.............................2113.0030000000030
...........................................................................................................................................................................................................GATTGAGACTG--------------CACTGCTG....................................................................1932.3370000000070
.......................................................................CTAGGTACTGGCAGAGGATG.....................................................................................................................................................................................................................2042.2590000000090
...............................................................................................................................................................................................................GAGACTG--------------CACTGCTGCTGAAT..............................................................2112.0020000000020
......................................................................GCTAGGTACTGGCAGAGGATG.....................................................................................................................................................................................................................2142.0080000000080
......................................A---GGATATTGTTGC---GGTTGCT................................................................................................................................................................................................................................................2012.0020000000020
........................................................................TAGGTACTGGCAGAGGATGA....................................................................................................................................................................................................................2042.0080000000080
............................................................................................TAAGA-----------------------------TTTTGGCAAGGACCTG..................................................................................................................................................................2112.0020000000020
.............................................................................ACTGGCAGAGGATGATAAGA-----------------------------T.................................................................................................................................................................................2112.0020000000020
..............................................................................................................................................................................................CGACTGCGACTCCGATTGAGA.............................................................................................2132.0060000000060
................................................................................................................................................................................................................AGACTG--------------CACTGCTGCTGAATT.............................................................2112.0020000000020
..........................................................................................................................................................................................................CGATTGAGACTG--------------CACTGCTGC...................................................................2132.0060100000050
.........................................................................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAA...................2042.0080000000080
................................................................................................................................................................................................................AGACTG--------------CACTGCTGCTGAATG.............................................................2112.0020000000020
....................................................................................................................................................................................................................................................................CTCCAGAAGATCGTCGAGATG.......................2141.7570000005020
......................................................................................................................................................................................................ACTCCGATTGAGACTG--------------CACTG.......................................................................2131.6750000000050
............................................................................................................................................................................................................ATTGAGACTG--------------CACTGCTGCTG.................................................................2131.6750000000050
.............................................................................................................................................................................................................TTGAGACTG--------------CACTGCTGC...................................................................1831.3340000000040
.....................................................................................................................................................................................................................................................................TCCAGAAGATCGTCGAGATG.......................2041.2550100003010
.....................................................................CGCTAGGTACTGGCAGAGG........................................................................................................................................................................................................................1941.2551000002020
...............................................................................................................................................................................................................................................................TGGCCCTCCAGAAGATCGTCG............................2141.2550000002030
............................................................................................................................................................................................AGCGACTGCGACTCCGATTGAG..............................................................................................2211.0010000000010
................................................................................................................................................................................................................AGACTG--------------CACTGCTGCTGAAT..............................................................2011.0010000000010
........................................................................................ATGATAAGA-----------------------------TTTTGGCAAGGACCTGG.................................................................................................................................................................2611.0010000000010
.....................................................................................AGGATGATAAGA-----------------------------TTTTGGCAAGGACC....................................................................................................................................................................2611.0010000000010
...........................................................................................................................................................................................................................................................AAGCTGGCCCTCCAGAAGATC................................2111.0010000000010
.....................................CA---GGATATTGTTGC---GGTTGCTC...............................................................................................................................................................................................................................................2211.0010000000010
................................................................................................................................................ATTATAAGTAAACTAAGGGTG...........................................................................................................................................2111.0010000000010
.......................................................................................................................................................................................................................................................................CAGAAGATCGTCGAGATGCGA....................2141.0040000001030
............................................................................................................................................................................................................................................................................................AAGAAGATCTTGCTACTGGT2041.0040000000040
.......................................................................................................................................................................................................CTCCGATTGAGACTG--------------CACTGC......................................................................2131.0030000000030
........................................................................TAGGTACTGGCAGAGGATGAT...................................................................................................................................................................................................................2141.0040000000040
.............................................................................ACTGGCAGAGGATGATAAG................................................................................................................................................................................................................1911.0010000000010
.............................................................................................................................................................................................................................................................GCTGGCCCTCCAGAAGATCG...............................2011.0010000001000
......................................A---GGATATTGTTGC---GGTTGCTC...............................................................................................................................................................................................................................................2111.0010000000010
...........................................................................................................................................................................................................................................GCTGAATGTTCC-CAAAAGCTG...............................................2111.0010000000010
................................GTTGACA---GGATATTGTTGC---GG.....................................................................................................................................................................................................................................................2111.0010000000010
.................................................................................................................................................TTATAAGTAAACTAAGGGTGC..........................................................................................................................................2111.0010000000010
.....................................................................................AGGATGATAAGA-----------------------------TTTTGGCAA.........................................................................................................................................................................2111.0010000000010
......................................................................................................................................................................................................................................................C-CAAAAGCTGGCCCTCCAGA.....................................2011.0010100000000
.................................TTGACA---GGATATTGTTGC---GG.....................................................................................................................................................................................................................................................2011.0010000000010
.......................................................................................................................................................................................................................................................................CAGAAGATCGTCGAGATGCGAA...................2241.0040000000040
..........................................................................................................................................................................................................CGATTGAGACTG--------------CACTGC......................................................................1831.0030000000030
....................................................................................................................................CAAGGACCTGGTATTATAAG........................................................................................................................................................2011.0010000000010
.........................................................................................TGATAAGA-----------------------------TTTTGGCAAGGAC.....................................................................................................................................................................2111.0010000000010
.........................................................................................................................................................................................................................................................AAAAGCTGGCCCTCCAGAAGATCGTC.............................2611.0010000000010
..............................................ATTGTTGC---GGTTGCTCTTATC..........................................................................................................................................................................................................................................2111.0010000000010
.......................................................................................GATGATAAGA-----------------------------TTTTGGCAAGGACCTG..................................................................................................................................................................2611.0010000000010
............................................ATATTGTTGC---GGTTGCTCTTA............................................................................................................................................................................................................................................2111.0010000000010
.......................................................................................................................................................................................GCAGCAGCGACTGCGACTCC.....................................................................................................2011.0010100000000
........................................................................................................................................................................................................TCCGATTGAGACTG--------------CACTGCTG....................................................................2231.0030000000030
......................................A---GGATATTGTTGC---GGTTGC.................................................................................................................................................................................................................................................1911.0010000000010
.........................................................................AGGTACTGGCAGAGGATGATAA.................................................................................................................................................................................................................2211.0010000000010
..........................................GGATATTGTTGC---GGTTGCTC...............................................................................................................................................................................................................................................2011.0010000000010
.......................................................................................GATGATAAGA-----------------------------TTTTGGCAAGGACCTGG.................................................................................................................................................................2711.0010000000010
...............................................TTGTTGC---GGTTGCTCTTATCGC........................................................................................................................................................................................................................................2211.0010000000010
.............................................................................................................................................................................................................TTGAGACTG--------------CACTGCTGCTGA................................................................2111.0010000000010
.....................................................................................................................................................................................................................................ACTGCTGCTGAATGTTCC-C.......................................................1931.0031000000020
....................................................................TCGCTAGGTACTGGCAGAGG........................................................................................................................................................................................................................2041.0040000004000
.....................................................................................................................................AAGGACCTGGTATTATAAGTA......................................................................................................................................................2111.0010000000010
...............................................................................................................................................................................................................................................................................CGTCGAGATGCGAAAGAAGA.............2040.7530000003000
......................................................................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGC......................2040.7531000002000
..............................................................................................................................................................................................................................................................................TCGTCGAGATGCGAAAGAAG..............2040.7530000000030
......................................................................................................................................................................................................ACTCCGATTGAGACTG--------------CACTGC......................................................................2230.6720000000020
........................................................................................................................................................................................................TCCGATTGAGACTG--------------CACTGCT.....................................................................2130.6720000000020
.............................................................................................................................................................................................................TTGAGACTG--------------CACTGCTGCT..................................................................1930.6720000000020
..............................................................CTCTTATCGCTAGGTACTGG..............................................................................................................................................................................................................................2030.6720100000010
.........................................................................................................................................................................................................CCGATTGAGACTG--------------CACTGC......................................................................1930.6720000000020
.........................................................................................................................................................................................................CCGATTGAGACTG--------------CACTGCTG....................................................................2130.6720000000020
....................................................................................................................................................................................................................................CACTGCTGCTGAATGTTCC-C.......................................................2030.6720001001000
.........................................................................................................................................................................................................................................................................GAAGATCGTCGAGATGCGA....................1940.5020000000020
....................................................................................................................................................................................................................................................................CTCCAGAAGATCGTCGAGATGCGA....................2440.5020000000020
.........................................................................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAAA.................2240.5020000000020
....................AGAGTG---CTCGTTGACA---GGA...................................................................................................................................................................................................................................................................1920.5011000000000
.........................................................................AGGTACTGGCAGAGGATGAT...................................................................................................................................................................................................................2040.5020000002000
..........................................................................................................................................................................................................................................................................................GAAAGAAGATCTTGCTACTG..2040.5020100010000
..................................................................................................................................................................................................................................................................................CGAGATGCGAAAGAAGATCT..........2040.5020000001010
.............................................................................................................................................................................................................................................................................ATCGTCGAGATGCGAAAGAA...............2040.5020000002000
........................................................................................................................................................TAAACTAAGGGTGCGTAATG....................................................................................................................................2040.5020000001010
.................................................................................................................................................................................................................................................................................TCGAGATGCGAAAGAAGATC...........2040.5020000000020
.....................................................................CGCTAGGTACTGGCAGAGGA.......................................................................................................................................................................................................................2040.5020000001010
.......................................................................................................................................................................................................................................................................CAGAAGATCGTCGAGATGC......................1940.5022000000000
.......................................................................CTAGGTACTGGCAGAGGA.......................................................................................................................................................................................................................1840.5020000000020
......................................................................................................................................................................................................................................................................CCAGAAGATCGTCGAGATG.......................1940.5020100001000
.........................................................................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAAGAAGA.............2640.5020000000020
...................................................................................................................................................................................................................................................................CCTCCAGAAGATCGTCGAGATGCGAAAG.................2840.5020000002000
........................................................................................................................................................................................................................................................................AGAAGATCGTCGAGATGCG.....................1940.5020000000020
......................................................................................................................................................AGTAAACTAAGGGTGCGTAAT.....................................................................................................................................2140.5020000001010
.........................................................................................................................................................................................................................................................................GAAGATCGTCGAGATGCGAAAG.................2240.5020000000020
....................................................................TCGCTAGGTACTGGCAGAGGA.......................................................................................................................................................................................................................2140.5020000010010
........................................................................................................................................................................................................................................................................................GCGAAAGAAGATCTTGCTAC....2040.5020000000020
...................................................................................................................................................................................................................................................................................GAGATGCGAAAGAAGATCTTG........2140.5020100001000
.............................................................................................................................................................................................GCGACTGCGACTCCGATTGA...............................................................................................2050.4020000000020
..............................................................................................................................................................................................CGACTGCGACTCCGATTGA...............................................................................................1950.4020000000020
..............................................................CTCTTATCGCTAGGTACTGGC.............................................................................................................................................................................................................................2130.3310000000010
.............................................................................................................................................................................................................TTGAGACTG--------------CACTGCTGCTG.................................................................2030.3310000000010
.............................................................GCTCTTATCGCTAGGTACTGG..............................................................................................................................................................................................................................2130.3310000000010
.....................................................................................................................................................................................................GACTCCGATTGAGACTG--------------CAC.........................................................................2030.3310000000010
.................................................................................................................................................................................................CTGCGACTCCGATTGAGACTG--------------............................................................................2130.3310000000010
.......................................................................................................................................................................................................CTCCGATTGAGACTG--------------CACTGCTG....................................................................2330.3310000000010
...........................................................TTGCTCTTATCGCTAGGTA..................................................................................................................................................................................................................................1930.3310000001000
.........................................................................................................................................................................................................CCGATTGAGACTG--------------CACTGCTA....................................................................2130.3310000000010
................................................................................................................................................................................................ACTGCGACTCCGATTGAGACTG--------------CA..........................................................................2430.3310000001000
.......................................................................................................................................................................................................................................TGCTGCTGAATGTTCC-CAAA....................................................2030.3310000000010
............................................................TGCTCTTATCGCTAGGTACTG...............................................................................................................................................................................................................................2130.3310000001000
....................................................................................................................................................................................................CGACTCCGATTGAGACTG--------------CA..........................................................................2030.3310000000010
.............................................................GCTCTTATCGCTAGGTACTG...............................................................................................................................................................................................................................2030.3310100000000
....................................................................................................................................................................................................................TG--------------CACTGCTGCTGAATGTT...........................................................1930.3310000000010
...............................................................TCTTATCGCTAGGTACTGGC.............................................................................................................................................................................................................................2030.3310000000010
..................................................................TATCGCTAGGTACTGGCAGAG.........................................................................................................................................................................................................................2130.3310000001000
.................................................................TTATCGCTAGGTACTGGCAGAA.........................................................................................................................................................................................................................2230.3310000000010
.....................................................................................................................................................................................................................................................................TCCAGAAGATCGTCGAGATGC......................2140.2510000001000
.......................................................................CTAGGTACTGGCAGAGGATGAA...................................................................................................................................................................................................................2240.2510000000010
......................................................................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGCGAAAG.................2540.2510000000010
...........................................................................................................................................................................................................................................................................................AAAGAAGATCTTGCTACT...1840.2510000000010
.............................................................................................................................................................................................................................................................................ATCGTCGAGATGCGAAAGAAGATC...........2440.2510000000010
......................................................................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGCG.....................2140.2510000001000
..............................................................................................................................................................................................CGACTGCGACTCCGATTGAGAT............................................................................................2240.2510000000010
.........................................................................................................................................................AAACTAAGGGTGCGTAATGCG..................................................................................................................................2140.2510000000010
......................................................................................................................................................................................................................................................................................ATGCGAAAGAAGATCTTGCTA.....2140.2510000000010
........................................................................................................................................................TAAACTAAGGGTGCGTAATGCG..................................................................................................................................2240.2510000000010
......................................................................................................................................................................................................................................................................CCAGAAGATCGTCGAGATGCC.....................2140.2510000000010
...........................................................................................................................................................................................................................................................................................AAAGAAGATCTTGCTACTGG.2040.2510000000010
.......................................................................CTAGGTACTGGCAGAGGATGT....................................................................................................................................................................................................................2140.2510000000010
..................................................................................................................................................................................................................................................................................CGAGATGCGAAAGAAGATCTTG........2240.2510000000010
................................................................................................................................................................................................................................................................GGCCCTCCAGAAGATCGTCGA...........................2140.2510000000010
......................................................................................................................................................AGTAAACTAAGGGTGCGTAA......................................................................................................................................2040.2510000000010
................................................................................................................................................................................................................................................................GGCCCTCCAGAAGATCGTCG............................2040.2510000000010
....................................................................................................................................................TAAGTAAACTAAGGGTGCG.........................................................................................................................................1940.2510000001000
..................................................................................................................................................................GTGCGTAATGCGCTAGCAGCT.........................................................................................................................2140.2510000010000
..............................................................................................................................................................................................................................................................................TCGTCGAGATGCGAAAGAA...............1940.2510000000010
........................................................................TAGGTACTGGCAGAGGATG.....................................................................................................................................................................................................................1940.2510000000010
................................................................................................................................................................................................................................................................................GTCGAGATGCGAAAGAAGA.............1940.2511000000000
.....................................................................................................................................................................................................................................................................TCCAGAAGATCGTCGAGAT........................1940.2510000001000
..........................................................................................................................................................AACTAAGGGTGCGTAATGCG..................................................................................................................................2040.2510000001000
...................................................................................................................................................................................................................................................................CCTCCAGAAGATCGTCG............................1740.2510000000010
.............................................................................................................................................................................................................................................................................ATCGTCGAGATGCGAAAGAAG..............2140.2510000010000
..................................................................................................................................................................................................................................................................CCCTCCAGAAGATCGTCG............................1840.2510000000010
.........................................................................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTACT...2040.2510000001000
.......................................................................................................................................................................................................................................................................................TGCGAAAGAAGATCTTGCTA.....2040.2510000001000
.........................................................................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTACTAT.2240.2510000000010
........................................................................................................................................................................................................................................................................AGAAGATCGTCGAGATGC......................1840.2510000000010
...................................................................................................................................................................................................................................................................................GAGATGCGAAAGAAGATCTT.........2040.2510000001000
.......................................................................................................................................................................................................................................................................CAGAAGATCGTCGAGATGCG.....................2040.2511000000000
.........................................................................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTAC....1940.2510000000010
........................................................................................................................................................................................................................................................................AGAAGATCGTCGAGATGCGA....................2040.2511000000000
......................................................................GCTAGGTACTGGCAGAGG........................................................................................................................................................................................................................1840.2510100000000
............................................................................................................................................................................................................................................................................................AAGAAGATCTTGCTACTGG.1940.2511000000000
....................................................................................................................................................TAAGTAAACTAAGGGTGCGTA.......................................................................................................................................2140.2510000000010
...................................................................................................................................................................................................................................................................CCTCCAGAAGATCGTCGAGA.........................2040.2511000000000
.................................................................................................................................................................................................................................................................................TCGAGATGCGAAAGAAGATCT..........2140.2510000001000
.....................................................................................................................................................................................................................................................................TCCAGAAGATCGTCGAGATGTTT....................2340.2510000001000
.........................................................................................................................................................................................................................................................................................CGAAAGAAGATCTTGCTACTG..2140.2510000000010
...................................................................................................................................................................................................................................................................CCTCCAGAAGATCGTCGAGATG.......................2240.2510000001000
...................................................................................................................................................................................................................CTG--------------CACTGCTGCTGAATGTTCT-TT......................................................2460.1710000000010
..............................................................................................................................................................................................CGACTGCGACTCCGATTG................................................................................................1860.1710000000010
droPer2
G----------------------------CTCGTTGACA---GGATGTTGTTGC---TGTTGCTCTCATCGCTAGGTACTGGCAGAGGATGATACGACGGATGCTGCTGCGGCTTCTGCTGCTCGGTTTTGGCAAGGACCTGGTATTCTAAGTAAACTAAAGGTGCGTAATGCGCTAGCAGCTGCAGCTGCGACTGCGACTCCGATTGAGACCG--------------CACTGCTGCTGAATGTTCC-CAAAAGATGGCCCTCCAGAAGATCGTCGAGATGCGAAAGAAGATCTTGCTACTGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................AGGTACTGGCAGAGGATGATA..................................................................................................................................................................................................................2121.002000002
................................GTTGACA---GGATGTTGTTGC---TG.....................................................................................................................................................................................................................................................2130.672000002
.......................................................................CTAGGTACTGGCAGAGGATGA....................................................................................................................................................................................................................2120.501000001
..............................................................................................CGACGGATGCTGCTGCGGC...............................................................................................................................................................................................1920.501000010
.......................................................................................GATGATACGACGGATGCTGC.....................................................................................................................................................................................................2020.501000001
....................................................................................................................................................................................................................................................................CTCCAGAAGATCGTCGAGATGC......................2220.501000001
droMoj3
A----------------------------GCAGC-----TGCGGCGGCG---GCTGCTGCTGCT--------------------------------------------------------------------------------------------------------------------------------------------GCTGCGACTG--------------C-CTGCTGCTG-----------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droAna3
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAGAAGGTGTCCGAGATGCGCAGGAAGATCACTAGGTTGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................CAGAAGGTGTCCGAGATGCGC....................2111.001000001
.................................................................................................................................................................................................................................................................................CCGAGATGCGCAGGAAGA.............1811.001010000
.............................................................................................................................................................................................................................................................................GTGTCCGAGATGCGCAGGAAGA.............2211.001000010
.............................................................................................................................................................................................................................................................................................GGAAGATCACTAGGTTGGT1911.001100000
...............................................................................................................................................................................................................................................................................GTCCGAGATGCGCAGGAAGATC...........2211.001000010
.........................................................................................................................................................................................................................................................................GAAGGTGTCCGAGATGCGCA...................2011.001000001
............................................................................................................................................................................................................................................................................GGTGTCCGAGATGCGCAGGAA...............2111.001000001
...............................................................................................................................................................................................................................................................................GTCCGAGATGCGCAGGAAGATCA..........2311.001000010
droBip1
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCCCAGAAAGTGTCCGAGATGCGCAGGAAGATCAACAGGCTGGTSizeHit CountTotal NormTotal
No Reads
droKik1
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGGTGTCCGAGGTGCGCAGGAAGATCAACCGATTGGTSizeHit CountTotal NormTotal
No Reads
droFic1
A----------------------------GCACC-----TGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------GCTGC-------------------------------------------CGCAGGA------CGAGGAGCGGGCTCCGCCGCGGGTGTCCGAGATGCGCAGGAAGATCACGCGACTGGTSizeHit CountTotal NormTotal
No Reads
droEle1
G----------------------------CTAAC-----A--------A---ATGG--------------------------------------------------------------------------------------------------------------------------------CACCAGCGACAGTGGCTCGGATTCGGGCAAGGAAAACTGTGCCTCCAATCAGCAGGAAAATCGAGAGGAGGAGGCTCCCCCGAGGGTGTCCGAAATGCGGAGGAAGATCAATCGACTGGTSizeHit CountTotal NormTotal
No Reads
droRho1
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGCAGGAAGATCACCCGGCTGGTSizeHit CountTotal NormTotal
No Reads
droBia1
C----------------------------GTTGA-----TGAGGCTGCTTCTGC---TGCTGCTGTTACTGCTGCCCACCGGCAGGGCCAGAAGCGG------------------------TTCCGACTTTGCTACTACCCGGTATTGTACGTAACCTAAACGTGCGTAATGCGTTTGCGATTGCAACTG---CTGCAGTTGCGGCAGATGGTG--------------CAGCAGTGGT------------------------------------------------------------GGTTGTSizeHit CountTotal NormTotal
No Reads
droTak1
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCGAGTATCCGAGATGAGGAGGAAGATCAGTCGATTGGTSizeHit CountTotal NormTotal
No Reads
droEug1
A----------------------------GCAGC-----CGCAGCAAGA---GCCGCACCAGCA--------------------------------------------------------------------------------------------------------------------ACAGCAGCAGC-------------------------------------------AGCTAGA------TGAGGATCGAGCTCCGCCAAAAGTGTCAGAGATGCGCCGGAAGATCAACAGACTGGTSizeHit CountTotal NormTotal
No Reads
dm3
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGGAGGAAAATCAGCCGACTGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGGAGGAAAATCAGCC.......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGCGGAGGAAAATCAGCCGACTGG.2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ATGCGGAGGAAAATCAGCCGACTG..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GGAGGAAAATCAGCCGA.....1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGGAGGAAAATCA..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GATGCGGAGGAAAATCAGCCG......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGGAGGAAAATCAGCCGACTGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................GGAAAATCAGCCGACTGGT1912.00202000000000000000
..............................................................................................................................................................................................................................................................................................GAAAATCAGCCGACTGGG1830.33101000000000000000
droSec2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCGAAGGAAAATTAGCCGACTGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCCAGAGTGTCCGAGATGAGGAGGAAAATCAGCCGACTGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................GTCCGAGATGAGGAGGAAAATCAGCCG......2711.00101000000000
..................................................................................................................................................................................................................................................................................CGAGATGAGGAGGAAAATC...........1911.00100100000000
droEre2
GCA-----------------------GGAGCATC-----TGCAGCACCA---GCCGAGCCAGCA--------------------------------------------------------------------------------------------------------------------GACCCAGCAGT-------------------------------------------CGCAGGA------TGAGGATCGAGCTCCGCCCAGGGTGTCCGAGATGCGGAGGAAAATCAGCCGACTGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................CCCAGCAGT-------------------------------------------CGCAGGA------TGAG.....................................................2011.0010000010
.........................................................................................................................................................................................................................................................................CAGGGTGTCCGAGATGCGGAGGAAA..............2511.0010000100
..............................................................................................................................................................................................................................................................................................GAAAATCAGCCGACTGGT1811.0011000000
..........................................................................................................................................................................................................................................................GGATCGAGCTCCGCCCAGG...................................1911.0011000000
..........................................................................................................................................................................................................................................CGCAGGA------TGAGGATCGAGCTC...........................................2111.0010000100
...............................................................A--------------------------------------------------------------------------------------------------------------------GACCCAGCAGT-------------------------------------------CGCAGGA------TGAG.....................................................2311.0010000100
.............................GCATC-----TGCAGCACCA---GCCGAGCCAGC.................................................................................................................................................................................................................................................2611.0011000000
....................................................................................................................................................................................GACCCAGCAGT-------------------------------------------CGCAGGA------TGAGGAT..................................................2511.0011000000
.............................................................................................................................................................................................................................................................................GTGTCCGAGATGCGGAGGAAAATC...........2411.0010000100
...............................ATC-----TGCAGCACCA---GCCGA.......................................................................................................................................................................................................................................................1820.5010010000

Generated: 05/18/2015 at 12:45 AM