ID:

dps_144

 Coordinate:

Unknown_group_179:11841-11926 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-44.0 -43.9 -43.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTGGTTGCTTTTTTGTAAATCTTAACTTTTTTCCGCCAGGTGGCTGTTTTGCCAACTAGGCGCTGGAGGGCGCGCACAGTCGCCAGGGTGCGTGCGCAGCCGACAGGTGGCGCGCACAGTCGCCAGAGGGCGCGGACAGCGCAGAGAAGAAACCGCTTACTTAATATCTATCATCCTCCGGCATA
***********************************.((.(((((((((..((((..((((...))))..))))...))))))))).))((((((((.((.((....))))))))))))........************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
 V112
male body		 SRR902010
ovaries
 GSM444067
head
 M062
head
..................................................TGCCAACTAGGCGCTGGAGG.................................................................................................................... 20 0 1 17.00 17 17 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGC.................................................................................................................. 22 0 1 16.00 16 11 2 3 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGCGCGC.............................................................................................................. 26 0 1 11.00 11 9 0 0 2 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCGG.... 27 0 1 11.00 11 10 0 0 0 1 0 0
...............GTAAATCTTAACTTTTTTCCGCCAGG................................................................................................................................................. 26 0 1 10.00 10 10 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGCGCG............................................................................................................... 25 0 1 10.00 10 8 0 2 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGG................................................................................................................... 21 0 1 8.00 8 8 0 0 0 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCGGC... 28 0 1 6.00 6 5 1 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAG..................................................................................................................... 19 0 1 6.00 6 6 0 0 0 0 0 0
...............GTAAATCTTAACTTTTTTCCGCCAG.................................................................................................................................................. 25 0 1 6.00 6 6 0 0 0 0 0 0
...............GTAAATCTTAACTTTTTTCCG...................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATCCT........ 23 0 1 4.00 4 4 0 0 0 0 0 0
...............GTAAATCTTAACTTTTTTCCGC..................................................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCG..... 26 0 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................................................................AAACCGCTTACTTAATATCTATC............. 23 0 1 3.00 3 3 0 0 0 0 0 0
....................TCTTAACTTTTTTCCGCCAGGTGGCTG........................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0
.............................................................................................................................................................TTACTTAATATCTATCATCCTCCGG.... 25 0 1 3.00 3 2 0 0 0 1 0 0
.............................................................................................TGCGGAGCGGACAGGGGGCG......................................................................... 20 3 20 2.75 55 0 0 0 35 0 15 5
...............GTAAATCTTAACTTTTTTCCGCCAGGT................................................................................................................................................ 27 0 1 2.00 2 1 1 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGCGCGCAC............................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0 0
...............GTAAATCTTAACTTTTTTCCGCC.................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
................TAAATCTTAACTTTTTTCCGCCAGG................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
...................................................GCCAACTAGGCGCTGGAGGGCGCGC.............................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................TGCGCAGCCGACAGGTGG........................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGCGCGCA............................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCC...... 25 0 1 2.00 2 1 0 0 0 1 0 0
.................................................TTGCCAACTAGGCGCTGGAGG.................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...............GGAAATCTTAACTTTTTTCCGCC.................................................................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
................TAAATCTTAACTTTTTTCCGC..................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGT................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGCGC................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0
....................TCTTAACTTTTTTCCGCCAGGTGG.............................................................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0
....................................................CCAACTAGGCGCTGGAGG.................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGCG................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
...............................................TTTTGCCAACTAGGCGCTGGAGG.................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................GCCAGGGTGCGTGCGCAGCCGACAGG.............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................TGCGTGCGCAGCCGACAGGTGG........................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............TTGTAAATCTTAACTTTTTTCCGCCAGGT................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGT.................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
.........................................TGGCTGTTTTGCCAACCAGGCGC.......................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................AAACCGCTTACTTAATATCTATCATCC......... 27 0 1 1.00 1 0 0 0 0 1 0 0
...........................................................................................................................................................GGTTACTTAATATCTATCATCCC........ 23 2 1 1.00 1 0 1 0 0 0 0 0
...................................................................................CCAGGGTGCGTGCGCAGCCGACAG............................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................GTCGCCAGAGGGCGCGGACAG.............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................TTTGCCAACTAGGCGCTGGAGG.................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
.................AAATCTTAACTTTTTTCCGCCAGG................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
....................TCTTAACTTTTTTCCGCCAGGTG............................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................CACAGTCGCCAGGGTGCGTGC.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.....................CTTAACTTTTTTCCGCCAGGTGT.............................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.................................................TTGCCAACTAGGCGCTGGAGGGT.................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
...............................................TTTTGCCAACTAGGCGCTGGAG..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
....................................................CCAACTAGGCGCTGGAGGGC.................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................ACAGTCGCCAGGGTGCGTGCGCAGCC.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................TGGCTGTTTTGCCAACTAGGCG........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................TGTTTTGCCAACTAGGCGCTGGAG..................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................TTTGCCAACTAGGCGCTGGAGGG................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................TTACTTAATATCTATCATCCTCC...... 23 0 1 1.00 1 1 0 0 0 0 0 0
...............GTAAATCTTAACTTTTTTCC....................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................TCGCCAGGGTGCGTGCGCAG...................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
......................TTAACTTTTTTCCGCCAGG................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
...................................................GCCAACTAGGCGCTGGAGGGC.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
....................TCTTAACTTTTTTCCCCCAGGTGC.............................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGTAGGGT.................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
...................................................GCCAACTAGGCGCTGGAGGGCGCG............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................CCAGAGGGCGCGGACAGCGC........................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCGGCA.. 29 0 1 1.00 1 1 0 0 0 0 0 0
.........................................TGGCTGTTTTGCCAACTAGGCGCTGG....................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...............GTAAATCTTAACTTTTTTCCGCCA................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................CGCCAACTAGGCGCTGGAGGGCGC................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................CGCACAGTCGCCAGAGGG....................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTC....... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGGAGGGCGCGA.............................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
.................................................TTGCCAACTAGGCGCTGGAGGGCGC................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................CAGCCGACAGGTGGCGCGCA..................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TGCCAACTAGGCGCTGAAGGGC.................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................TGCCAACTACGCGCTGGCGGGCGCG............................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0
................................................TTTGCCAACTAGGCGCTGGAGGGC.................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.................................................TTGCCAACTAGGCGCTGGAGGGC.................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................ACAGGTGGCGCGCACAGTCGC.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................CTTACTTAATATCTATCATCCTC....... 23 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................GCTTACTTAATATCTATCATC.......... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................TCTTAACTTTTTTCCGCCAGG................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CCGACAGGTGGCGCGCACAG.................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................TAATATCTATCATCCTCCGGCATA 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................TTTGCCAACTAGGCGCTGGAAA.................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TGCGGAGCGGACAGGGGGCGC........................................................................ 21 3 3 0.33 1 0 0 0 1 0 0 0
......................................................................................GGGAACGTGCGCCGCCGACA................................................................................ 20 3 8 0.13 1 1 0 0 0 0 0 0
.............................................................................................TGCGTAGCGGACAGGGGGC.......................................................................... 19 3 18 0.06 1 0 0 0 0 0 1 0
..................................................................................................AGCCTTCTGGTGGCGCGCA..................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

AAACCAACGAAAAAACATTTAGAATTGAAAAAAGGCGGTCCACCGACAAAACGGTTGATCCGCGACCTCCCGCGCGTGTCAGCGGTCCCACGCACGCGTCGGCTGTCCACCGCGCGTGTCAGCGGTCTCCCGCGCCTGTCGCGTCTCTTCTTTGGCGAATGAATTATAGATAGTAGGAGGCCGTAT
************************************************************.((.(((((((((..((((..((((...))))..))))...))))))))).))((((((((.((.((....))))))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
 GSM343916
embryo
 GSM444067
head
AAACCAACGAAAAAACATTTAGAAT................................................................................................................................................................. 25 0 1 24.00 24 15 5 4 0 0
...........................................................................................................................................CGCGTTTCTTCTTTGGCGAATGAATT..................... 26 1 1 23.00 23 22 0 1 0 0
.......................................................................................................................................CTGTCGCGTCTCTTCTTTGGCGAAT.......................... 25 0 1 21.00 21 8 12 1 0 0
........................................................................................................GTCCACCGCGCGTGTCAGCGGTCT.......................................................... 24 0 1 11.00 11 11 0 0 0 0
.......................................................................................................................................CTGTCGCGTTTCTTCTTTGGCGAAT.......................... 25 1 1 11.00 11 10 0 1 0 0
.AACCAACGAAAAAACATTTAGAAT................................................................................................................................................................. 24 0 1 11.00 11 8 0 2 1 0
.............................................................................................................................................CGTTTCTTCTTTGGCGAATGAATT..................... 24 1 1 10.00 10 10 0 0 0 0
.............................................................................GTCAGCGGTCCCACGCACGCGT....................................................................................... 22 0 1 10.00 10 10 0 0 0 0
...........................................................................................................................................CGCGTCTCTTCTTTGGCGAATGAATT..................... 26 0 1 8.00 8 5 3 0 0 0
...........................................................................GTGTCAGCGGTCCCACGCACGCGT....................................................................................... 24 0 1 8.00 8 8 0 0 0 0
.........................................................................................................................................GTCGCGTCTCTTCTTTGGCGAAT.......................... 23 0 1 8.00 8 6 2 0 0 0
............................................................................................................................................GCGTTTCTTCTTTGGCGAATGAATT..................... 25 1 1 8.00 8 8 0 0 0 0
.............................................................................................................................................CGTCTCTTCTTTGGCGAATGAATT..................... 24 0 1 6.00 6 5 0 0 1 0
..............................................................................................................................................GTCTCTTCTTTGGCGAATGAATTAT................... 25 0 1 6.00 6 6 0 0 0 0
......................................................................................CCCACGCACGCGTCGGCTGTCCAC............................................................................ 24 0 1 6.00 6 6 0 0 0 0
..............................................................................................................................................GTTTCTTCTTTGGCGAATGAATT..................... 23 1 1 5.00 5 5 0 0 0 0
..........................................................................CGTGTCAGCGGTCCCACGCACGCGT....................................................................................... 25 0 1 5.00 5 5 0 0 0 0
................................................................................................................CGCGTGTCAGCGGTCTCCCGCGCCT................................................. 25 0 1 5.00 5 5 0 0 0 0
...............................................................................CAGCGGTCCCACGCACGCGT....................................................................................... 20 0 1 4.00 4 2 0 2 0 0
...................................................................................................CGGCTGTCCACCGCGCGTGT................................................................... 20 0 1 4.00 4 4 0 0 0 0
.............................................................................GTCAGCGGTCCCACGCACGCGTCGGCT.................................................................................. 27 0 1 4.00 4 4 0 0 0 0
........................................................................................................................................TGTCGCGTCTCTTCTTTGGCGAAT.......................... 24 0 1 3.00 3 0 3 0 0 0
.......................................................................GCGCGTGTCAGCGGTCCCACGCACGCGT....................................................................................... 28 0 1 3.00 3 3 0 0 0 0
..................................................................................................................CGTGTCAGCGGTCTCCCGCGCCTGT............................................... 25 0 1 3.00 3 3 0 0 0 0
................................................................................................................CGCGTGTCAGCGGTCTCCCGCGC................................................... 23 0 1 3.00 3 3 0 0 0 0
..............................................................................................................................................GTTTCTTCTTTGGCGAATGAATTAT................... 25 1 1 3.00 3 3 0 0 0 0
.................................................................................................................GCGTGTCAGCGGTCTCCCGCGCCT................................................. 24 0 1 3.00 3 3 0 0 0 0
.........................................................................................................................................GTCGCGTTTCTTCTTTGGCGAATGAATT..................... 28 1 1 3.00 3 3 0 0 0 0
...............................................................................................................................................TCTCTTCTTTGGCGAATGAATT..................... 22 0 1 3.00 3 1 2 0 0 0
..............................................................................................................................................TTCTCTTCTTTGGCGAATGAATT..................... 23 1 1 3.00 3 0 3 0 0 0
.........................................................................................................................................GTCGCGTTTCTTCTTTGGCGAAT.......................... 23 1 1 2.00 2 2 0 0 0 0
.....................................................................................................GCTGTCCACCGCGCGTGTCAGCGGTCT.......................................................... 27 0 1 2.00 2 2 0 0 0 0
...................................................................................................................GTGTCAGCGGTCTCCCGCGC................................................... 20 0 1 2.00 2 2 0 0 0 0
.................................................................................................GTCGGCTGTCCACCGCGCGT..................................................................... 20 0 1 2.00 2 2 0 0 0 0
...............................................................GACCTCCCGCGCGTGTCAGCGGT.................................................................................................... 23 0 1 2.00 2 2 0 0 0 0
....................................................................CCCGCGCGTGTCAGCGGTCCCACGC............................................................................................. 25 0 1 2.00 2 2 0 0 0 0
..........................................................................................................................................TCGCGTCTCTTCTTTGGCGAATGAATT..................... 27 0 1 2.00 2 2 0 0 0 0
............................................................................................................................................GCGTTTCTTCTTTGGCGAAT.......................... 20 1 1 2.00 2 2 0 0 0 0
..........................................................................................................................................TCGCGTCTCTTCTTTGGCGAAT.......................... 22 0 1 2.00 2 1 1 0 0 0
.......................................................................................................................AAGCGGTCTCCCGCGCCTGTCGCGTCTC....................................... 28 1 1 2.00 2 2 0 0 0 0
.....................................................................................................................GTCAGCGGTCTCCCGCGCCTGTCGCGT.......................................... 27 0 1 2.00 2 2 0 0 0 0
.................................................................CCTCCCGCGCGTGTCAGCGGT.................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
..................................................................................................................CGTGTCAGCGGTCTCCCGCGC................................................... 21 0 1 2.00 2 2 0 0 0 0
.............................................................................................................................................CGTTTCTTCTTTGGCGAATGAAT...................... 23 1 1 2.00 2 2 0 0 0 0
......................................................................................................................................CCTGTCGCGTTTCTTCTTTGGCGAAT.......................... 26 1 1 2.00 2 2 0 0 0 0
...................................................................................................................GTGTCAGCGGTCTCCCGCGCCT................................................. 22 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................................GTCTCTTCTTTGGCGAATGAATT..................... 23 0 1 2.00 2 2 0 0 0 0
.........................................................................................................................................GTCGCGTTTCTTCTTTGGCGAATGAA....................... 26 1 1 2.00 2 2 0 0 0 0
........................................................................CGCGTGTCAGCGGTCCCACGCACGCGT....................................................................................... 27 0 1 2.00 2 2 0 0 0 0
....................................................................................................................TGTCAGCGGTCTCCCGCGCCTGT............................................... 23 0 1 2.00 2 2 0 0 0 0
...........................................................................................................................................CGCGTTTCTTCTTTGGCGAATGAATTAT................... 28 1 1 2.00 2 2 0 0 0 0
......ACGAAAAAACATTTAGAATTGAAA............................................................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0
.AACCAACGAAAAAACATTTAGAATT................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0
..ACCAACGAAAAAACATTTAGAAT................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0
............................................................................TGTCAGCGGTCCCACGCACGCGT....................................................................................... 23 0 1 2.00 2 2 0 0 0 0
...........................................................................................................................................CGCGTTTCTTCTTTGGCGAATGAAT...................... 25 1 1 1.00 1 1 0 0 0 0
.............................................................................GTCAGCGGTCCCACGCACGCGTC...................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................AATTATAGATAGTAGGAGGCCGT.. 23 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................GCGTTTCTTCTTAGGCGAAT.......................... 20 2 1 1.00 1 1 0 0 0 0
......................................................................................................................................CCTGTCGCGTCTCTTCTTTGGCGAAT.......................... 26 0 1 1.00 1 1 0 0 0 0
..................................................................................CGGTCCCACGCACGCGTCGGCTGT................................................................................ 24 0 1 1.00 1 1 0 0 0 0
...CCAACGAAAAAACATTTAGAAT................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................GCGTCTCTTCTTTGGCGAATGAATT..................... 25 0 1 1.00 1 0 1 0 0 0
...........................................................................................GCACGCGTCGGCTGTCCAC............................................................................ 19 0 1 1.00 1 1 0 0 0 0
................................................................................................................................CCCGCGCCTGTCGCGTCTCTTCTTT................................. 25 0 1 1.00 1 1 0 0 0 0
..................................................................................................ACGGCTGTCCACCGCGCGTGTCAGC............................................................... 25 1 1 1.00 1 1 0 0 0 0
AAACCAACGAAAAAACATTTAGAGT................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0
.....................................................................................................................................GCCTGTCGCGTTTCTTCTTTGGCGAAT.......................... 27 1 1 1.00 1 1 0 0 0 0
AAACCAACGAAAAAACATTTAGAA.................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
....................................................................................................GGCTGTCCACCGCGCGTGTCAGCGGT............................................................ 26 0 1 1.00 1 1 0 0 0 0
..............................................................................................................CGCGCGTGTCAGCGGTCTCC........................................................ 20 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................GTCGCGTCTCTTCTTTGGCGAATGAATT..................... 28 0 1 1.00 1 1 0 0 0 0
..................................................................................................................CGTGTCAGCGGTCTCCCGCG.................................................... 20 0 1 1.00 1 1 0 0 0 0
..............................................................................TCAGCGGTCCCACGCACGCGT....................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...AAAACGAAAAAACATTTAGAAT................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................................................CAGCGGTCTCCCGCGCCTGT............................................... 20 0 1 1.00 1 1 0 0 0 0
..........................................CCGACAAAACGGTTGATCCGCGACCT...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..................................GCGGTCCACCGACAAAACGGTTGAT............................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.AACCAACGAAAAAACATTTAGAAA................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
..............................AAAGGCGGTCCACCGACAAAACGGT................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
...........................AAAAAAGGCGGTCCACCGACAAAACGG.................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...................................................................................................CGGCTGTCCACCGCGCGTGTCAGC............................................................... 24 0 1 1.00 1 1 0 0 0 0
....................................................................................................GGCTGTCCACCGCGCGTGTCAG................................................................ 22 0 1 1.00 1 1 0 0 0 0
.......................................................TGATCCGCGACCTCCCGCGCGTGT........................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..ACCAACGAAAAAACATTTAGAATTGAAA............................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................CAGCGGTCTCCCGCGCCTGTCGCGT.......................................... 25 0 1 1.00 1 0 0 0 1 0
...............................................................................................................TAGCGTGTCAGCGGTCTCCCGCGC................................................... 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................GCGCGTGTCAGCGGTCTCCCGCGCCT................................................. 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................CCGCGCGTGTCAGTGGTCTCCCGCGCCT................................................. 28 1 1 1.00 1 0 0 1 0 0
......................................................................................................................................ACTGTCGCGTCTCTTCTTTGGCGAAT.......................... 26 1 1 1.00 1 0 1 0 0 0
.................................................................................................................GCGTGTCAGCGGTCTCCCGCGC................................................... 22 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................CTCGTCTCTTCTTTGGCGAATGAATT..................... 26 1 1 1.00 1 0 0 1 0 0
..................................................................................................................AGTGTCAGCGGTCTCCCGCGCCT................................................. 23 1 1 1.00 1 1 0 0 0 0
................................................AAACGGTTGATCCGCGACCTCCCGCGCGT............................................................................................................. 29 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................CGTTTCTTCTTTGGCGAATGAATTAT................... 26 1 1 1.00 1 1 0 0 0 0
........................................CACCGACAAAACGGTTGATCCGCGACCT...................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.............................................................................GTCAGCGGTCCCACGCACGC......................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................CGCGTCTCTTCTTTGGCGAATGAAT...................... 25 0 1 1.00 1 1 0 0 0 0
..........................................AAGACAAAACGGTTGATCCGCGACCTCC.................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0
..............................................................CGACCTCCCGCGCGTGTCAGCGGT.................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.......................................CCACCGACAAAACGGTTGATCCGCGACCT...................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................CTGTCGCGTCTCTTCTTTGGCGAA........................... 24 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................AGAATGAATTATAGATAGTAGGAGGCC.... 27 1 1 1.00 1 1 0 0 0 0
..............................................................................TCAGCGGTCCCACGCACGCGTCGG.................................................................................... 24 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................TTCTTCTTTGGCGAATGAATTAT................... 23 1 1 1.00 1 1 0 0 0 0
..............................................................................................................CGCGCGTGTCAGCGGTCTCCCGCGCCT................................................. 27 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................CGCCTGTCGCGTTTCTTCTTTGGCGAAT.......................... 28 1 1 1.00 1 1 0 0 0 0
................................................................................................................................................TTCTTCTTTGGCGAATGAATT..................... 21 1 1 1.00 1 1 0 0 0 0
..ACCAACGAAAAAACATTTAGAATT................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0
...........................................................................GTGTCAGCGGTCCCACGCACGCTT....................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..............................................................................ACAGCGGTCCCACGCACGCGTCGGC................................................................................... 25 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................GGTCTCCCGCGCCTGTCGCGTCTCTT..................................... 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................GTCGCGTCTCTTCTTTGGCGAATGAAT...................... 27 0 1 1.00 1 1 0 0 0 0
.......................................................................GCGCGTGTCAGCGGTCCCACGCACGC......................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..........................................................................TGTGTCAGCGGTCCCACGCACGCGT....................................................................................... 25 1 1 1.00 1 1 0 0 0 0
...................................................................TCCCGCGCGTGTCAGCGGTCCCA................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................GCGTCTCTTCTTTGGCGAATGAAT...................... 24 0 1 1.00 1 1 0 0 0 0
....................................GGTCCACCGACAAAACGGTTGATCCGC........................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...............................................................................CAGCGGTCCCACGCACGCGTCG..................................................................................... 22 0 1 1.00 1 0 0 1 0 0
..........................................CCGACAAAACGGTTGATCCGCGACC....................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................................CCACCGCGCCTGTCAGCGGTCTCCCGCGC................................................... 29 1 1 1.00 1 1 0 0 0 0
................................................................................................CGTCGGCTGTCCACCGCGCGT..................................................................... 21 0 1 1.00 1 1 0 0 0 0
..............................................................................................................CGCGCGTGTCAGCGGTCTCCCGCGC................................................... 25 0 1 1.00 1 1 0 0 0 0
.....AACGAAAAAACATTTAGAATTGAAA............................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.........................................................................................ACGCACGCGTCGGCTGTCCAC............................................................................ 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................CGCACGCGTCGGCTGTCCACC........................................................................... 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................CTCTTCTTTGGCGAATGAATTAT................... 23 0 1 1.00 1 1 0 0 0 0
............................................GACAAAACGGTTGATCCGCGACCTCC.................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................TGTCCACCGCGCGTGTCAGCGGTCT.......................................................... 25 0 1 1.00 1 1 0 0 0 0
....................................GGTCCACCGACAAAACGGTTGAT............................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................CGCGTCTCTTCTTTGGCGAATGAATTAT................... 28 0 1 1.00 1 1 0 0 0 0
.............................................................................GTCAGCGGTCCCACGCACGCG........................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................GTCAGCGGTCTCCCGCGCCT................................................. 20 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................GCGCCTGTCGCGTTTCTTCT................................... 20 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................TCTTTGGCGAATGAATTATAGATAGT............ 26 0 1 1.00 1 1 0 0 0 0
......................................................................CGCGCGTGTCAGCGGTCCCACGCACGCGT....................................................................................... 29 0 1 1.00 1 1 0 0 0 0
....................................................................................................GGCTGTCCACCGCGCGTGTCAGCGGTCT.......................................................... 28 0 1 1.00 1 1 0 0 0 0
................................................................................................................................CCCGCGCCTGTCGCGTTTCTTCTTT................................. 25 1 1 1.00 1 1 0 0 0 0
.................................................................................................GTCGGCTGTCCACCGCGCGTGT................................................................... 22 0 1 1.00 1 1 0 0 0 0
AAACCAACGAAAAAACATTTAGA................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..........................................................................................................CCACCGCGCGTGTCAGCGGTCT.......................................................... 22 0 1 1.00 1 1 0 0 0 0
.......................................................................GCGCGTGTCAGCGGTCCC................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
..............................................................................TCAGCGGTCCCACGCACGCGTC...................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...................................................................................GGTCCCACGCACGCGTCGGC................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...................................................CGGTTGATCCGCGACCTCCCGCGCGT............................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
...................TAGAATTGAAAAAAGGCGGTCCACCG............................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................CCACCGCGCGTGTCAGCGGTCTCCC....................................................... 25 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................TTCTCTTTTTTGGCGAATGAATT..................... 23 2 1 1.00 1 0 1 0 0 0
................................................................................................................................................TTCTTCTTTGGCGAATGAATTATAGAT............... 27 1 1 1.00 1 1 0 0 0 0
..........................................................................CGTGTCAGCGGTCCCACGCACGCG........................................................................................ 24 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................CTTCTTTGGCGAATGAATT..................... 19 0 1 1.00 1 1 0 0 0 0
....................................................................CCCGCGCGTGTCAGCGGTCCCACG.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0
..ACCAACGAAAAAACATTTAGAA.................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
................................................................................................................CGCGTGTCAGCGGTCTCCCGCGCC.................................................. 24 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................CTTCTTTGGCGAATGAAT...................... 18 0 1 1.00 1 1 0 0 0 0
........................................................................................CACGCGCGCGTCGGCTGTCCACC........................................................................... 23 1 1 1.00 1 1 0 0 0 0
..............................................................................TCAGCGGTCCCACGCACGCGTCGGCT.................................................................................. 26 0 1 1.00 1 1 0 0 0 0
................................................................................................CGTCGGCTGTCCACCGCGCGTGT................................................................... 23 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................GAATTATAGATAGTAGGAGGCCGT.. 24 0 1 1.00 1 1 0 0 0 0
..............................................................CGACCTCCCGCGCGTGTCAGCGG..................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...................................................................................................................ATGTCGGCGGTCTCCCGCGCCTGT............................................... 24 2 1 1.00 1 1 0 0 0 0
............................................................................................................................................GCGTTTCTTCTTTGGCGAATGAAT...................... 24 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................................GTTTCTTCTTTGGCGAATGAA....................... 21 1 2 0.50 1 1 0 0 0 0
.................................................................................GGCGTCCCACGCACGCGT....................................................................................... 18 2 3 0.33 1 1 0 0 0 0
........................................................................................................GTCCACGGCGCCTGGCAGCG.............................................................. 20 3 6 0.17 1 0 0 0 0 1
.............................................................................GTCAGCGGTCATGCGCACG.......................................................................................... 19 3 15 0.13 2 2 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_179:11791-11976 + dps_144 TTTGGTTGCTTTTTTGTAAATCTTAACTTTTTTCCGCCAGGTGGCTGTTTTGCCAACTAGGCGCTGGAGGGCGCGCACAGTCGCCAGGGTGCGTGCGCAGCCGACAGGTGGCGCGCACAGTCGCCAGAGGGCGCGGACAGCGCAGAGAAGAAACCGCTTACTTAATATCTATCATCCTCCGGCATA
droPer2 scaffold_234:14186-14371 + TTTGGTTGCTTTTTTGTAAATCTTAACTTTTTTCCGCCAGGTGGCTGTTTTGCCAACTAGGCGCTGGAGGGCGCGCACAGTCGCCAGGGTGCGTGCGCAGCCGACAGGTGGCGCGCACAGTCGCCAGAGGGCGCGGACAGCGCAGAGAAGAAACCGCTTACTTAATATCTATTATCCTCCGGCACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTTGGTTGCTTTTTTGTAAATCTTAACTTTTTTCCGCCAGGTGGCTGTTTTGCCAACTAGGCGCTGGAGGGCGCGCACAGTCGCCAGGGTGCGTGCGCAGCCGACAGGTGGCGCGCACAGTCGCCAGAGGGCGCGGACAGCGCAGAGAAGAAACCGCTTACTTAATATCTATCATCCTCCGGCATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................TGCCAACTAGGCGCTGGAGG....................................................................................................................20117.001701700000000
..................................................TGCCAACTAGGCGCTGGAGGGC..................................................................................................................22116.001601120300000
..................................................TGCCAACTAGGCGCTGGAGGGCGCGC..............................................................................................................26111.00110900002000
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCGG....27111.001101000000100
...............GTAAATCTTAACTTTTTTCCGCCAGG.................................................................................................................................................26110.001001000000000
..................................................TGCCAACTAGGCGCTGGAGGGCGCG...............................................................................................................25110.00100800200000
..................................................TGCCAACTAGGCGCTGGAGGG...................................................................................................................2118.0080800000000
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCGGC...2816.0060510000000
..................................................TGCCAACTAGGCGCTGGAG.....................................................................................................................1916.0060600000000
...............GTAAATCTTAACTTTTTTCCGCCAG..................................................................................................................................................2516.0060600000000
...............GTAAATCTTAACTTTTTTCCG......................................................................................................................................................2114.0040400000000
...........................................................................................................................................................GCTTACTTAATATCTATCATCCT........2314.0040400000000
...............GTAAATCTTAACTTTTTTCCGC.....................................................................................................................................................2214.0040400000000
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCG.....2614.0040400000000
......................................................................................................................................................AAACCGCTTACTTAATATCTATC.............2313.0030300000000
....................TCTTAACTTTTTTCCGCCAGGTGGCTG...........................................................................................................................................2713.0030300000000
.............................................................................................................................................................TTACTTAATATCTATCATCCTCCGG....2513.0030200000100
...............GTAAATCTTAACTTTTTTCCGCCAGGT................................................................................................................................................2712.0020110000000
..................................................TGCCAACTAGGCGCTGGAGGGCGCGCAC............................................................................................................2812.0020200000000
...............GTAAATCTTAACTTTTTTCCGCC....................................................................................................................................................2312.0020200000000
................TAAATCTTAACTTTTTTCCGCCAGG.................................................................................................................................................2512.0020200000000
...................................................GCCAACTAGGCGCTGGAGGGCGCGC..............................................................................................................2512.0020200000000
.............................................................................................TGCGCAGCCGACAGGTGG...........................................................................1812.0020200000000
..................................................TGCCAACTAGGCGCTGGAGGGCGCGCA.............................................................................................................2712.0020200000000
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCC......2512.0020100000100
.................................................TTGCCAACTAGGCGCTGGAGG....................................................................................................................2112.0020200000000
................TAAATCTTAACTTTTTTCCGC.....................................................................................................................................................2112.0020200000000
..................................................TGCCAACTAGGCGCTGGAGGT...................................................................................................................2112.0020200000000
..................................................TGCCAACTAGGCGCTGGAGGGCGC................................................................................................................2412.0020200000000
....................TCTTAACTTTTTTCCGCCAGGTGG..............................................................................................................................................2412.0020200000000
....................................................CCAACTAGGCGCTGGAGG....................................................................................................................1812.0020200000000
..................................................TGCCAACTAGGCGCTGGAGGGCG.................................................................................................................2311.0010100000000
...............................................TTTTGCCAACTAGGCGCTGGAGG....................................................................................................................2311.0010100000000
..................................................................................GCCAGGGTGCGTGCGCAGCCGACAGG..............................................................................2611.0010100000000
.........................................................................................TGCGTGCGCAGCCGACAGGTGG...........................................................................2211.0010100000000
.............TTGTAAATCTTAACTTTTTTCCGCCAGGT................................................................................................................................................2911.0010010000000
..................................................TGCCAACTAGGCGCTGGAGGGT..................................................................................................................2211.0010100000000
......................................................................................................................................................AAACCGCTTACTTAATATCTATCATCC.........2711.0010000000100
...................................................................................CCAGGGTGCGTGCGCAGCCGACAG...............................................................................2411.0010100000000
.......................................................................................................................GTCGCCAGAGGGCGCGGACAG..............................................2111.0010100000000
................................................TTTGCCAACTAGGCGCTGGAGG....................................................................................................................2211.0010000100000
.................AAATCTTAACTTTTTTCCGCCAGG.................................................................................................................................................2411.0010100000000
....................TCTTAACTTTTTTCCGCCAGGTG...............................................................................................................................................2311.0010100000000
...........................................................................CACAGTCGCCAGGGTGCGTGC..........................................................................................2111.0010000100000
.....................CTTAACTTTTTTCCGCCAGGTGT..............................................................................................................................................2311.0010100000000
.................................................TTGCCAACTAGGCGCTGGAGGGT..................................................................................................................2311.0010100000000
...............................................TTTTGCCAACTAGGCGCTGGAG.....................................................................................................................2211.0010100000000
....................................................CCAACTAGGCGCTGGAGGGC..................................................................................................................2011.0010100000000
............................................................................ACAGTCGCCAGGGTGCGTGCGCAGCC....................................................................................2611.0010100000000
.........................................TGGCTGTTTTGCCAACTAGGCG...........................................................................................................................2211.0010100000000
.............................................TGTTTTGCCAACTAGGCGCTGGAG.....................................................................................................................2411.0010100000000
................................................TTTGCCAACTAGGCGCTGGAGGG...................................................................................................................2311.0010100000000
.............................................................................................................................................................TTACTTAATATCTATCATCCTCC......2311.0010100000000
...............GTAAATCTTAACTTTTTTCC.......................................................................................................................................................2011.0010100000000
................................................................................TCGCCAGGGTGCGTGCGCAG......................................................................................2011.0010100000000
......................TTAACTTTTTTCCGCCAGG.................................................................................................................................................1911.0010100000000
...................................................GCCAACTAGGCGCTGGAGGGC..................................................................................................................2111.0010100000000
...................................................GCCAACTAGGCGCTGGAGGGCGCG...............................................................................................................2411.0010100000000
...........................................................................................................................CCAGAGGGCGCGGACAGCGC...........................................2011.0010100000000
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTCCGGCA..2911.0010100000000
.........................................TGGCTGTTTTGCCAACTAGGCGCTGG.......................................................................................................................2611.0010100000000
...............GTAAATCTTAACTTTTTTCCGCCA...................................................................................................................................................2411.0010100000000
.................................................................................................................CGCACAGTCGCCAGAGGG.......................................................1811.0010100000000
...........................................................................................................................................................GCTTACTTAATATCTATCATCCTC.......2411.0010100000000
..................................................TGCCAACTAGGCGCTGGAGGGCGCGA..............................................................................................................2611.0010100000000
.................................................TTGCCAACTAGGCGCTGGAGGGCGC................................................................................................................2511.0010100000000
.................................................................................................CAGCCGACAGGTGGCGCGCA.....................................................................2011.0010100000000
................................................TTTGCCAACTAGGCGCTGGAGGGC..................................................................................................................2411.0010100000000
.................................................TTGCCAACTAGGCGCTGGAGGGC..................................................................................................................2311.0010100000000
.......................................................................................................ACAGGTGGCGCGCACAGTCGC..............................................................2111.0010100000000
............................................................................................................................................................CTTACTTAATATCTATCATCCTC.......2311.0010100000000
...........................................................................................................................................................GCTTACTTAATATCTATCATC..........2111.0010100000000
....................TCTTAACTTTTTTCCGCCAGG.................................................................................................................................................2111.0010100000000
....................................................................................................CCGACAGGTGGCGCGCACAG..................................................................2011.0010100000000
..................................................................................................................................................................TAATATCTATCATCCTCCGGCATA2411.0010100000000
................................................TTTGCCAACTAGGCGCTGGAAA....................................................................................................................2211.0010100000000
droPer2
TTTGGTTGCTTTTTTGTAAATCTTAACTTTTTTCCGCCAGGTGGCTGTTTTGCCAACTAGGCGCTGGAGGGCGCGCACAGTCGCCAGGGTGCGTGCGCAGCCGACAGGTGGCGCGCACAGTCGCCAGAGGGCGCGGACAGCGCAGAGAAGAAACCGCTTACTTAATATCTATTATCCTCCGGCACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/15/2015 at 02:39 PM