ID:

dps_1422

 Coordinate:

4_group1:4649162-4649452 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.8 -11.4 -11.3

Flybase annnotation

CDS [Dpse\GA25181-cds]; exon [dpse_GLEANR_16535:3]; exon [dpse_GLEANR_16535:4]; CDS [Dpse\GA25181-cds]; intron [Dpse\GA25181-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGTCCTTGAGATTGTTGTCGATGGCCAAGTCAAAAGATGCGGCGGCTTGGTAGGTTCGGCCTCTTGCAAAGGATGCGCTTCTGTCCTGCTGGAATGCGATTCTGTCTGACTGGGATTCCGTCTTGCGTTGGGAAATCGGATACGACTCAGTTTGTGGCAAGGCGTAATGTACATATGTATGTACATAAGTTTCCTGTGAAGGAAGAAAATTTTTTTTTAAATATATTCATAATTATATACTGTTTTACTTACGCGTCTCGAAGCTGAAGCCCAGCGTTTGATTCGGCGGCGCATGGATGTGGGGGTTGCTGACATTATTTCACTAGTCCCTGCTGCATAGGACGAGACGCCACATTGTCGACTCAGCGACACAGCAGCGGCATCAGGAGT
***********************************************************************************************.............(((((((..((((..((........))..)))).....))))))).....***************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M022
male body		 GSM343916
embryo
 SRR902012
CNS imaginal disc
 GSM444067
head
 M062
head
...............................................................................................TGCGATTCTGTCTGACTGGG.................................................................................................................................................................................................................................................................................... 20 0 1 21.00 21 19 1 0 0 0 1 0 0
..............................................................................................ATGCGATTCTGTCTGACTGGG.................................................................................................................................................................................................................................................................................... 21 0 1 11.00 11 11 0 0 0 0 0 0 0
...............................................................................................TGCGATTCTGTCTGACTGGGA................................................................................................................................................................................................................................................................................... 21 0 1 8.00 8 8 0 0 0 0 0 0 0
.........................................................................................................................................CGGATACGACTCAGTTTGTGG......................................................................................................................................................................................................................................... 21 0 1 4.00 4 3 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................CATAATTATATACTGTTTTAC.............................................................................................................................................. 21 0 1 4.00 4 4 0 0 0 0 0 0 0
.....................................................................................CCTGCTGGAATGCGATTCTG.............................................................................................................................................................................................................................................................................................. 20 0 1 4.00 4 0 4 0 0 0 0 0 0
..............................................................................................ATGCGATTCTGTCTGACTGG..................................................................................................................................................................................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................TGCTGCATAGGACGAGACGC........................................ 20 0 1 4.00 4 4 0 0 0 0 0 0 0
...............................................................................................TGCGATTCTGTCTGACTGG..................................................................................................................................................................................................................................................................................... 19 0 1 3.00 3 1 0 2 0 0 0 0 0
.........................................................................................................................................................................................................................................TTATATACTGTTTTACTTAC.......................................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0
.....................................................................................CCTGCTGGAATGCGATTCTGTCC........................................................................................................................................................................................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................CTGTCCTGCTGGAATGCGATT................................................................................................................................................................................................................................................................................................. 21 0 1 3.00 3 0 3 0 0 0 0 0 0
.....................................................................................................TCTGTCTGACTGGGATTCCG.............................................................................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0
....................................................................................TCCTGCTGGAATGCGATTCTG.............................................................................................................................................................................................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TATTCATAATTATATACTGTT.................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................CTGCTGGAATGCGATTCTG.............................................................................................................................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TGGATGTGGGGGTTGCTGACA............................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................GTTGGGAAATCGGATACGAC.................................................................................................................................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0
...................................................................................................ATTCTGTCTGACTGGGATTCC............................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATACTGTTTTACTTACGCGTC..................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TTATATACTGTTTTACTTACG......................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................CGACTCAGTTTGTGGCAAGGC................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................TAGGACGAGACGCCACATTG................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................TCTGTCTGACTGGGATTCC............................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.AGTCCTTGAGATTGTTGTCGT................................................................................................................................................................................................................................................................................................................................................................................. 21 1 3 1.33 4 4 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GATTCGGCGGCGCATGGATG........................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................TTGGGAAATCGGATACGACTC.................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................CTGCTGGAATGCGATTCTGTC............................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CGGCGCATGGATGTGGGGGT.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................ACGACTCAGTTTGTGGCAAGG.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................ACTCAGTTTGTGGCAAGGCG.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................TTCTGTCCTGCTGGAATGCGA................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................CGTCTTGCGTTGGGAAATCGG........................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CGGCGCATGGATGTGGGGGTT................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................GTTGGGAAATCGGATACGACTC.................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................CTGTTTTACTTACGCGTCTCG.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TTTGATTCGGCGGCGCATGG.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................TAGGTTCGGCCTCTTGCAAAG............................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................AAGATGCGGCGGCTTGGTAG................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
AAGTCCTTGAGATTGTTGTCG.................................................................................................................................................................................................................................................................................................................................................................................. 21 0 3 1.00 3 1 1 1 0 0 0 0 0
..............................TCAAAAGATGCGGCGGCTTGG.................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......TTGAGATTGTTGTCGATGGC............................................................................................................................................................................................................................................................................................................................................................................. 20 0 4 1.00 4 4 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................TGCTGCATAGGACGAGACGCC....................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................TGCGGCGGCTTGGTAGGTTCG............................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................TGCGATTCTGTCTGACTGGGAA.................................................................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................AATGCGATTCTGTCTGACTG...................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................CCTGCTGGAATGCGATTCTTTT............................................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................TTGCGTTGGGAAATCGGATACG...................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................TCTGTCTGACTGGGATTCCGT............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................CCGTCTTGCGTTGGGAAATCG............................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................CTTGCGTTGGGAAATCGGAA......................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................AATGCGATTCTGTCTGACTGG..................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................AGTTTGTGGCAAGGCGTAATG............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................CCTCTTGCAAAGGATGCGCTTC..................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................TGGAATGCGATTCTGTCTGAC........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TATATACTGTTTTACTTACG......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CGGCGCATGGATGTGGGGG..................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................CTTCTGTCCTGCTGGAATGCG.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................AATGCGATTCTGTCTGACTGGG.................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................TTCTGTCTGACTGGGATTCC............................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................TAATTATATACTGTTTTACTT............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CTGCTGCATAGGACGAGACGC........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................TGTCCTGCTGGAATGCGATT................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................TCTGTCCTGCTGGAATGCG.................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................CTGACTGGGATTCCGTCTTGCG....................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................CAAAAGATGCGGCGGCTTGG.................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................TTGCGTTGGGAAATCGGATAC....................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................AGTCAAAAGATGCGGCGGCTT...................................................................................................................................................................................................................................................................................................................................................... 21 0 3 0.67 2 0 0 2 0 0 0 0 0
.........AGATTGTTGTCGATGGCCAAG......................................................................................................................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TTTGATTCGGCGGCGCATG............................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0
.GGTCCTTGAGATTGTTGTCG.................................................................................................................................................................................................................................................................................................................................................................................. 20 1 4 0.50 2 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................................................................................................GAAGCCCAGCGTTTGATTCGG........................................................................................................ 21 0 6 0.50 3 3 0 0 0 0 0 0 0
.......TGAGATTGTTGTCGATGGCCA........................................................................................................................................................................................................................................................................................................................................................................... 21 0 4 0.50 2 0 0 2 0 0 0 0 0
................................................................TTGCAAAGGATGCGCTTC..................................................................................................................................................................................................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................TGATTCGGCTACGTATGGATGT.......................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................TGATTCGGCTACGTATGGATGTGG........................................................................................ 24 3 2 0.50 1 0 0 0 0 1 0 0 0
...........................................................................................................................................GATACGACTCAGTTTGTGGCA....................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0
.........AGATTGTTGTCGATGGCCAA.......................................................................................................................................................................................................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................CGTAATGTACATACGTATGGAG.............................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................GTTTGATTCGGCGGCGCATG............................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TGATTCGGCTACGTATGGATGTG......................................................................................... 23 3 2 0.50 1 0 0 0 0 1 0 0 0
.......TGAGATTGTTGTCGATGGCC............................................................................................................................................................................................................................................................................................................................................................................ 20 0 4 0.50 2 0 0 2 0 0 0 0 0
...............................................................CTTGCAAAGGATGCGCTTCTG................................................................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0
...........ATTGTTGTCGATGGCCAAG......................................................................................................................................................................................................................................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0
........GAGATTGTTGTCGATGGCC............................................................................................................................................................................................................................................................................................................................................................................ 19 0 4 0.50 2 0 0 0 2 0 0 0 0
................................................................TTGCAAAGGATACGCTTC..................................................................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 1 0
........................GCCAAGTCAAAAGATGCGG............................................................................................................................................................................................................................................................................................................................................................ 19 0 3 0.33 1 0 0 1 0 0 0 0 0
.........................CCAAGTCAAAAGATGCGGCGG......................................................................................................................................................................................................................................................................................................................................................... 21 0 3 0.33 1 0 0 1 0 0 0 0 0
.....................ATGGCCAAGTCAAAAGATGCG............................................................................................................................................................................................................................................................................................................................................................. 21 0 3 0.33 1 0 1 0 0 0 0 0 0
......................................................................................................................................AATCGGATACGACTCAGTTTC............................................................................................................................................................................................................................................ 21 1 3 0.33 1 1 0 0 0 0 0 0 0
...........................AAGTCAAAAGATGCGGCGGC........................................................................................................................................................................................................................................................................................................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................................ATTCTGTCTGACTGGGATTC................................................................................................................................................................................................................................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0 0
..GTCCTTGAGATTGTTGTCGAT................................................................................................................................................................................................................................................................................................................................................................................ 21 0 3 0.33 1 0 0 1 0 0 0 0 0
.AGTCCTTGAGATTGTTGTCG.................................................................................................................................................................................................................................................................................................................................................................................. 20 0 3 0.33 1 0 0 1 0 0 0 0 0
.AGTCCTTGAGATTGTTGTC................................................................................................................................................................................................................................................................................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0 0
.......TGAGATTGTTGTCGATGGC............................................................................................................................................................................................................................................................................................................................................................................. 19 0 4 0.25 1 1 0 0 0 0 0 0 0
.GGTCCTTGAGATTGTTGTCGA................................................................................................................................................................................................................................................................................................................................................................................. 21 1 4 0.25 1 0 0 1 0 0 0 0 0
.................................................................................................CGATTCTGTCTGACTGGGATC................................................................................................................................................................................................................................................................................. 21 1 4 0.25 1 0 0 1 0 0 0 0 0
...TCCTTGAGATTGTTGTCGATG............................................................................................................................................................................................................................................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0
.......................................................................GGATGCGCTTCTGTCCTGCT............................................................................................................................................................................................................................................................................................................ 20 0 4 0.25 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................CGGCGTCGAATGGATGTG......................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0
......TTGAGATTGTTGTCGATG............................................................................................................................................................................................................................................................................................................................................................................... 18 0 4 0.25 1 0 0 1 0 0 0 0 0
............................................................................CGCTTCTGTCCTGCTGGAAA....................................................................................................................................................................................................................................................................................................... 20 1 4 0.25 1 0 1 0 0 0 0 0 0
........GAGATTGTTGTCGATGGC............................................................................................................................................................................................................................................................................................................................................................................. 18 0 4 0.25 1 1 0 0 0 0 0 0 0
........GAGATTGTTGTCGATGGCCA........................................................................................................................................................................................................................................................................................................................................................................... 20 0 4 0.25 1 0 0 1 0 0 0 0 0
.....CTTGAGATTGTTGTCGATGGCCA........................................................................................................................................................................................................................................................................................................................................................................... 23 0 4 0.25 1 0 0 1 0 0 0 0 0
....................................................................................TCCTGCTGGTATGTGATTTTGT............................................................................................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 1 0 0 0 0 0
............................................................................CGCTTCTGTCCTGCTGGAATT...................................................................................................................................................................................................................................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0 0 0
.........AGATTGTTGTCGATGGCCA........................................................................................................................................................................................................................................................................................................................................................................... 19 0 5 0.20 1 0 0 1 0 0 0 0 0
..........GATGGTTGTCGCTGGGCAAGT........................................................................................................................................................................................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................TGCTTACGCGTCTCGAAGCTG............................................................................................................................ 21 1 6 0.17 1 0 0 1 0 0 0 0 0
............TTGTTGTCGATGGCCAAGTC....................................................................................................................................................................................................................................................................................................................................................................... 20 0 8 0.13 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TTTACTTACGCGTCTCGAAG............................................................................................................................... 20 0 8 0.13 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CGCCACATTGTCGACACAGCG...................... 21 1 8 0.13 1 0 0 1 0 0 0 0 0
..........................................................................TGCGCTTCTGTCCTGCTGGA......................................................................................................................................................................................................................................................................................................... 20 0 9 0.11 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAGCCCAGCGTTTGATTCGG........................................................................................................ 20 0 9 0.11 1 0 0 1 0 0 0 0 0
...........ATTGTTGTCGATGGCCAAGTCG...................................................................................................................................................................................................................................................................................................................................................................... 22 1 10 0.10 1 1 0 0 0 0 0 0 0
..............................................................TCTTGACAAGGATGCGTTTC..................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0 0 0 0 0
.......................................GCGGCGGCTGGGTGGGTT.............................................................................................................................................................................................................................................................................................................................................. 18 2 20 0.10 2 0 0 2 0 0 0 0 0
.....CTTGAGATGGTTGTCGATGGC............................................................................................................................................................................................................................................................................................................................................................................. 21 1 12 0.08 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................CGCGTCTCGAAGCTGAAGCCC...................................................................................................................... 21 0 13 0.08 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................ACTTACGCGTCTCGAAGCTGA........................................................................................................................... 21 0 15 0.07 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TGGATGGGGGGGTTGCTGG.............................................................................. 19 2 15 0.07 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................CGTCTCGAAGCTGAAGCCC...................................................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CGTCTCGAAGCTGAAGCCCA..................................................................................................................... 20 0 17 0.06 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................GTGGAAAGGCGTAATTTAAA......................................................................................................................................................................................................................... 20 3 18 0.06 1 0 1 0 0 0 0 0 0
.........................................................................ATGCGCTTCTGTCCTGCTTTT......................................................................................................................................................................................................................................................................................................... 21 3 19 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................GAAGCTGAAGCCCATCGTTT............................................................................................................... 20 1 19 0.05 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................CCCTGCTGAATAAAACGAG............................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................TCTGTCCTGCTGGCATCCG.................................................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTCAGGAACTCTAACAACAGCTACCGGTTCAGTTTTCTACGCCGCCGAACCATCCAAGCCGGAGAACGTTTCCTACGCGAAGACAGGACGACCTTACGCTAAGACAGACTGACCCTAAGGCAGAACGCAACCCTTTAGCCTATGCTGAGTCAAACACCGTTCCGCATTACATGTATACATACATGTATTCAAAGGACACTTCCTTCTTTTAAAAAAAAATTTATATAAGTATTAATATATGACAAAATGAATGCGCAGAGCTTCGACTTCGGGTCGCAAACTAAGCCGCCGCGTACCTACACCCCCAACGACTGTAATAAAGTGATCAGGGACGACGTATCCTGCTCTGCGGTGTAACAGCTGAGTCGCTGTGTCGTCGCCGTAGTCCTCA
*****************************************************************************************************************************************************************************************************************************************.............(((((((..((((..((........))..)))).....))))))).....*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M062
head
 M022
male body		 GSM343916
embryo
 GSM444067
head
 SRR902010
ovaries
............................................................................GCGAAGACAGGACGACCTTA....................................................................................................................................................................................................................................................................................................... 20 0 2 2.00 4 1 3 0 0 0 0 0 0
...................................................................GTTTCCTACGCGAAGACAGGACG............................................................................................................................................................................................................................................................................................................. 23 0 2 1.50 3 3 0 0 0 0 0 0 0
...........................................................................................................ACTGACCCTAAGGCAGAACGT....................................................................................................................................................................................................................................................................... 21 1 2 1.00 2 0 2 0 0 0 0 0 0
.......................................................................CCTACGCGAAGACAGGACGACC.......................................................................................................................................................................................................................................................................................................... 22 0 4 0.75 3 3 0 0 0 0 0 0 0
....GGAACTCTAACAACAGCTAC............................................................................................................................................................................................................................................................................................................................................................................... 20 0 4 0.50 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGAGTCGCTGGGTCGTCGCC.......... 26 3 2 0.50 1 0 0 0 0 0 1 0 0
...................GCTACCGGTTCAGTTTTCTA................................................................................................................................................................................................................................................................................................................................................................ 20 0 4 0.50 2 0 1 1 0 0 0 0 0
.....................................................................CTCCTACGCGAAGACAGGACGACCT......................................................................................................................................................................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................TTCCTACGCGAAGACAGGACGACCT......................................................................................................................................................................................................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0
........................................................................CTACGCGAAGACAGGACGACC.......................................................................................................................................................................................................................................................................................................... 21 0 4 0.50 2 1 0 0 0 1 0 0 0
...............................................................GAACGTTTCCTACGCGAAGAC................................................................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................CCCTTTAGCCTGTGCTGAGTC................................................................................................................................................................................................................................................ 21 1 2 0.50 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................CGCAGAGCTTCGACTTCGGGTCGCAAACT............................................................................................................. 29 0 3 0.33 1 0 0 0 1 0 0 0 0
.......................................................................CCTACGCGAAGACAGGACGAC........................................................................................................................................................................................................................................................................................................... 21 0 4 0.25 1 0 0 0 0 1 0 0 0
.......................................................................CCTACGCGAAGACAGGACGA............................................................................................................................................................................................................................................................................................................ 20 0 4 0.25 1 0 1 0 0 0 0 0 0
..................................................GATCCATGCCGGACAACGT.................................................................................................................................................................................................................................................................................................................................. 19 3 6 0.17 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................................................................................GTCGCTGTGTCGTCGCCGT........ 19 0 6 0.17 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AGCTTCGACTTCGGGTCGCAAAC.............................................................................................................. 23 0 7 0.14 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CTGCGGTGTAACAGCTGAGTC........................ 21 0 11 0.09 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TAAAAAAGGCATCAGGGACG......................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................................................................................................................TGCGGTGTAACAGCTGAGT......................... 19 0 12 0.08 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................CGGTGTAACAGTTGAGTCG....................... 19 1 13 0.08 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GGGTCGCAAACTAAGCCGC...................................................................................................... 19 0 14 0.07 1 1 0 0 0 0 0 0 0
..................................................................................................................................CCCTTTAGCCTATGCTGATA................................................................................................................................................................................................................................................. 20 2 16 0.06 1 0 0 1 0 0 0 0 0
........................................................................................................................CCGAATGCAACCCTTTGG............................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................TCCCACGCGAAGACAGGACGAC........................................................................................................................................................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:4649112-4649502 - dps_1422 AAGTCCTTGAGATTGTTGTCGATGGCCAAGTCAAAAGATGCGG-CG---------------------GCTTGGTAGGTTCGGC------------------------------------CT---------CTTGCAAAGGATGCGCTTCTGTCCTGCTGGAAT---------------------GCGATTCTGTCTGACTGGGATT---------------------------------------------------------CCGTCTTGCGTTGGGAAATCGG---------------------ATACGACTCAGTTTGTGGCAAGGCGTAATGTACATATGTATGTACATAAGTTTCCTGTGAA-------GGAAGAAAATTT--------TTTTTT-----AAATATATTCATA--------AT----TATATACT------GTTTTACTTACGCGTCTCGAAGCTGAAGCCCAGCGTTTGATTCGGCGGCGCATGGATGTGGGGGTTGCTGACATTATTTCACTAGTCCCTGCTGCATAGGACGAGACGCCACATTGTCGACTCAGCGACACAGCAGCGGCATCAGGAGT
droPer2 scaffold_5:562593-562975 + dpe_1737 AAGTCCTTGAGATTGTTGTCGATGGCCAAGTCAAAAGATGCGG-CG---------------------GCTTGGTAGGTTCGGC------------------------------------CT---------CTTGCAAAGGATGCGCTTCTGTCCTGCTGGAAT---------------------GCCATTCTGTCTGACTGGGATT---------------------------------------------------------CCGTCTTGCGTTGGGAAATCGG---------------------ATACGACTCGGT----GGCAAGGCGTAATGTACATAT----GTACATAAGTTTGCTGTGAT-------GGAAGAAATATT--------TTTTTT-----AAATATATTCATA--------ATTA----TATACT------TTTTTACTTACGCGTCTCGAAGCTGAAGCCCAGCGTTTGATTCGGCGGCGCATGGATGTGGGGGTTGCTGACATTATTTCACTAGTCCCTGCTGCATAGGACGAGACGCCACATTGCCGACTCAGCGACACAGCAGCGGCATCAGGAGT
droWil2 scf2_1100000004585:6712935-6713107 - AAATCTTTCAGATAGTTATCAATGGCCAAGTCAAATGTGGATGATG---------------------GCTTATTTGGATTAGGTTCTCCTCCAGCATAGGCCTTGGACTGTGCTTGAGGTTCTTCGGGTATTGGTATGGAATAGCTCTCAGTTTGTGTGGGAT---------------------AGGCTTGTGTTTGACTAGGAT-------------------------------------------------------------------------------------------------------AGGATTCGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:14571687-14571891 + AAATCCTTGAGATAGTTATCGATAGCCAGGTCGAAGGATGACGCGG---------------ACTCTGGTTTTATCGAATTCGACTCGGGTGTCTCGTATGACTTGTCC------------------------------GGATATGCCTCCGTCTGCGTGGGAT---------------------ATGCCTCGGTCTGGGG-------------------------CATGGGCAATGGCACTGGCTGGGGCTCGGGCTGGGACTCAGGCTCGGGCTCGGGCGCTGG---------------------ATACGATTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:12177205-12177340 - TGCTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTGTGAGCAGTTGAA-AAGAGAAACTCAATTGAAATTTG------AAACATGATCAAACC--GA--TT------TATAC-------TCTCTACTCACGCGTCTCGAAGCTGAAGCCTAGCGTTGGGTCTGGCGGCGTATTGA---------------------------------------------------------------------------------------------
droGri2 scaffold_15252:8268362-8268515 + AAATCCTTTAGATAATTATCGATAGCCAGATCGAAGGAGGAAGACGACGACGGCGGCGGCGATTGTGGTTTAATCGAATTCGATTCGGGTGACTCGTAGGATTTGT------------------------------CGG---------------------GAT---------------------ACGACTCGGTCTGGGTGGGATATGCCTCAGT--------------------------------------------------------------------------------TTGTGGCATG-----------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12943:916464-916617 - AAGTCCTTCAGGTAGTTGTCAATGGCCAGGTCGAAGGTGGAGGATG---------------------GCTTGTCCGGTCCGGGTACGGAGTTGTCGTAAGTCTTTACCGGGGCCGGAGGAG---------GTGGCACGGGATACGATTCCGTTTGCGGGGCAT---------------------ACGACTCCGTGTGGCTGGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396728:2217181-2217380 + AAGTCCTTCAGGTAGTTGTCTATGGCCAGGTCGAAGGTGGAGGATG---------------------GCTTGTCCCGACCGGGAACGGAGTTATCGTAGGTCTTCACCGGGGCAGGAGGCG---------GTGGCACAGGATAGGATTCAGTTTGCGGAGCAT---------------------ACGACTCCGTGTGGTTGGGATAGGACTCCGTGGCGGTGGGAT-------------------------------------------------------------AGGTCTCCTTG------GGGTAAGACTCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302472:1879664-1879851 - AAGTCCTTCAGATAGTTATCTATGGCTAGATCAAAGTTGGACGATG---------------------GCTTGTCCGCTCCGGACTCCAGACTGCCGTAAGACTTGGCCTGCGGCTGT---------------GGGGACTGATAGGATTCCGTGATGCTGGGAT---------------------AGGACTCGGTCTGGCTGGGATAGGACTCTGTGATGCTG-------------------------------------------------------------GGATAGGACTCTTTGTGGCTGG-----------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000449391:845-1032 + AAGTCCTTCAGGTAGTTATCGATGGCCAGATCGAAGGTTGAGGATG---------------------GCTTGTCGGGACCCGATTCGGGTGCTCCATATGGCTTCACCTCCGGCTGGGGCT---------GTGGCACAGGAC------------TCGGCTGAT---------------------AGGACTCGGTCTGGCTGGGATACGATTCCGTGATGCTGGGAT-------------------------------------------------------------AGGAATCCTTG------GGATACGATTCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491186:2179631-2179779 - GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCTCTTTGGA-------AAGG-CAAGATA--------TTTTGGCTATCAGTTTTGACCATTAT--G---TATGTGTAT----ATAACGTCTTCTACTTACGCGTCTCAAAACTAAAGCCCAGCGTTGGATCTGGCGGCGTATTGAGCATGGAGTTGCCGACATT--------------------------------------------------------------------------
droRho1 scf7180000777283:2010-2224 + AAGTCCTTCAGATAGTTATCGATGGCCAGGTCAAAGGTCGAGGATG---------------------GCTTATCAGGGCCGGATTCGGGTCCACCATATGGCTTAACCTCCGGCTGAGGTT---------CCGGTACGGGATAGTTCTCCGTACGGGGTTGATAGGCCTCCGTTTGGCTGGGATATGCCTCCGTTTGACTGGGATATGCCTCCGTGATGCTG-------------------------------------------------------------GGGTACGACTCCTTGTGGCTGG-----------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302408:3629148-3629353 + AAGTCCTTCAGGTAGTTATCAATGGCCAGGTCGAAGGTGGAGGATG---------------------GCTTATCGGGACCCGATTCGGGGCCACCATATGGCTTGACCTGCGGCTGTGGCT---------CCGGCACAGGGTAGGCCTCCGTGCGGGGTTGAT---------------------AGGACTCGGTTTGGCTGGGATATGACTCCGTGATGCTGGGAT-------------------------------------------------------------AAGAGTCCTTGTGGCTGGGATACGACTCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415702:272525-272657 + GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTGTTGG-------AAGG-GAAGGAG--------CA-------TGAGTTATGATTAAAAT--AAAATATA--TAT--GAA----TTGATTTACTTACGCGTCTCGAAGCTAAAGCCAAGCGTTGGATCTGGCGGCGTGTTGAGCATGGAGTTG----------------------------------------------------------------------------------
droEug1 scf7180000409554:223198-223275 + AC-----TGTTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTACGCGTCTCGAAACTAAAGCCCATCGTTGGGTCTGGCGGCGTGTTGAGCATGGAATTGCTGACATT--------------------------------------------------------------------------
dm3 chr2L:9547118-9547257 - AAGTCCTTCAGATAATTATCGATGGCCAGATCGAACGTGGACGATG---------------------GCTTATCGGGTCCAGAATCGGGACCACCATATGGCTTGATCTCCGGTTGG---------------GGTACGGGATAGGCTTCCGTACGCGGTTGAT---------------------AGGACTCAGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:8938422-8938560 - GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTATGGT-------AATAAAAAGGAA--------TTTTGA-----AGTTATATCCAAAAT--A---AATATG----TGTG------CCAGTACTTACGCGTCTCGAAGCTGAAGCTCAGCGTTGGGTCCGGCGGCGTGTTGAGCATGGTGTTGCTGACATT--------------------------------------------------------------------------
droSec2 scaffold_3:4704598-4704736 - GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTATGGA-------AATAAAAATGAA--------TTTTGA-----AGTTATAACCAAAAT--A---AATATG----TGTG------CCAGTACTTACGCGTCTCAAAGCTGAAGCTCAGCGTTGGGTCCGGCGGCGTGTTGAGCATGGAGTTGTTGACATT--------------------------------------------------------------------------
droYak3 2L:11912923-11913062 - GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTGTGCA-------AATA-AAACAAA--------TTTTAT-----AATTATAAGTAAAATGCA---TATA--TAT--GTG------CTGGTACTTACGCGTCTCGAAGCTGAAGCTCAGCGTTGGGTCTGGCGGCGTGTTGAGCATGGAGTTGCTGACATT--------------------------------------------------------------------------
droEre2 scaffold_4929:10152699-10152846 - AAGTCCTTCAGATAATTATCGATGGCCAGGTCAAAGTTGGAGGAGG---------------------GCTTGTCGGCGCCAGCATCGGGACCACCATAAGGCTTGACCTCCGGCTGA---------------GGCACGGGATAGGCCTCCGTACGGGGTTGAT---------------------AGGACTCGGTTTGGCTGGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAGTCCTTGAGATTGTTGTCGATGGCCAAGTCAAAAGATGCGG-CG---------------------GCTTGGTAGGTTCGGC------------------------------------CT---------CTTGCAAAGGATGCGCTTCTGTCCTGCTGGAAT---------------------GCGATTCTGTCTGACTGGGATT---------------------------------------------------------CCGTCTTGCGTTGGGAAATCGG---------------------ATACGACTCAGTTTGTGGCAAGGCGTAATGTACATATGTATGTACATAAGTTTCCTGTGAA-------GGAAGAAAATTT--------TTTTTT-----AAATATATTCATA--------AT----TATATACT------GTTTTACTTACGCGTCTCGAAGCTGAAGCCCAGCGTTTGATTCGGCGGCGCATGGATGTGGGGGTTGCTGACATTATTTCACTAGTCCCTGCTGCATAGGACGAGACGCCACATTGTCGACTCAGCGACACAGCAGCGGCATCAGGAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................T---------------------GCGATTCTGTCTGACTGGG........................................................................................................................................................................................................................................................................................................................................................................................................20121.002100000010191
.................................................................................................................................................................AT---------------------GCGATTCTGTCTGACTGGG........................................................................................................................................................................................................................................................................................................................................................................................................21111.001100000000110
..................................................................................................................................................................T---------------------GCGATTCTGTCTGACTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................2118.0080000000080
..........................................................................................................................................................................................................................................................................................CGG---------------------ATACGACTCAGTTTGTGG...............................................................................................................................................................................................................................................................................2114.0041000000030
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATA--------AT----TATATACT------GTTTTAC..............................................................................................................................................2114.0040000000040
........................................................................................................................................................CCTGCTGGAAT---------------------GCGATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000004000
.................................................................................................................................................................AT---------------------GCGATTCTGTCTGACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000040
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCATAGGACGAGACGC........................................2014.0040000000040
..................................................................................................................................................................T---------------------GCGATTCTGTCTGACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................1913.0030200000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................T----TATATACT------GTTTTACTTAC..........................................................................................................................................2013.0030000000030
........................................................................................................................................................CCTGCTGGAAT---------------------GCGATTCTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000030
....................................................................................................................................................CTGTCCTGCTGGAAT---------------------GCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000003000
.............................................................................................................................................................................................TCTGTCTGACTGGGATT---------------------------------------------------------CCG.........................................................................................................................................................................................................................................................................................................................................2012.0020000000020
.......................................................................................................................................................TCCTGCTGGAAT---------------------GCGATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000001010
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATTCATA--------AT----TATATACT------GTT..................................................................................................................................................2112.0020000000020
.........................................................................................................................................................CTGCTGGAAT---------------------GCGATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGGGGGTTGCTGACA............................................................................2112.0020000000020
................................................................................................................................................................................................................................................................................GTTGGGAAATCGG---------------------ATACGAC..........................................................................................................................................................................................................................................................................................2012.0020000001010
...........................................................................................................................................................................................ATTCTGTCTGACTGGGATT---------------------------------------------------------CC..........................................................................................................................................................................................................................................................................................................................................2112.0020000001010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACT------GTTTTACTTACGCGTC.....................................................................................................................................2112.0020000000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................T----TATATACT------GTTTTACTTACG.........................................................................................................................................2112.0020000000020
.....................................................................................................................................................................................................................................................................................................................CGACTCAGTTTGTGGCAAGGC.........................................................................................................................................................................................................................................................................2112.0020000000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGACGAGACGCCACATTG.................................2012.0020000000020
.............................................................................................................................................................................................TCTGTCTGACTGGGATT---------------------------------------------------------CC..........................................................................................................................................................................................................................................................................................................................................1912.0020000000020
.AGTCCTTGAGATTGTTGTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2131.3340000000040
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGGCGGCGCATGGATG...........................................................................................2011.0010000001000
.................................................................................................................................................................................................................................................................................TTGGGAAATCGG---------------------ATACGACTC........................................................................................................................................................................................................................................................................................2111.0010000001000
.........................................................................................................................................................CTGCTGGAAT---------------------GCGATTCTGTC................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCATGGATGTGGGGGT....................................................................................2011.0010000000010
....................................................................................................................................................................................................................................................................................................................ACGACTCAGTTTGTGGCAAGG..........................................................................................................................................................................................................................................................................2111.0010000000010
.......................................................................................................................................................................................................................................................................................................................ACTCAGTTTGTGGCAAGGCG........................................................................................................................................................................................................................................................................2011.0010000001000
..................................................................................................................................................TTCTGTCCTGCTGGAAT---------------------GCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
........................................................................................................................................................................................................................................................................CGTCTTGCGTTGGGAAATCGG---------------------.................................................................................................................................................................................................................................................................................................2111.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCATGGATGTGGGGGTT...................................................................................2111.0010000000010
................................................................................................................................................................................................................................................................................GTTGGGAAATCGG---------------------ATACGACTC........................................................................................................................................................................................................................................................................................2211.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------GTTTTACTTACGCGTCTCG..................................................................................................................................2111.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTCGGCGGCGCATGG..............................................................................................2011.0010000000010
.........................................................................TAGGTTCGGC------------------------------------CT---------CTTGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
..................................AAGATGCGG-CG---------------------GCTTGGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
AAGTCCTTGAGATTGTTGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2131.0030100001010
..............................TCAAAAGATGCGG-CG---------------------GCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......TTGAGATTGTTGTCGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2041.0040000000040
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCATAGGACGAGACGCC.......................................2111.0010000000010
......................................TGCGG-CG---------------------GCTTGGTAGGTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..................................................................................................................................................................T---------------------GCGATTCTGTCTGACTGGGAA......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
................................................................................................................................................................AAT---------------------GCGATTCTGTCTGACTG..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
............................................................................................................................................................................................................................................................................TTGCGTTGGGAAATCGG---------------------ATACG............................................................................................................................................................................................................................................................................................2211.0010000000010
.............................................................................................................................................................................................TCTGTCTGACTGGGATT---------------------------------------------------------CCGT........................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.......................................................................................................................................................................................................................................................................CCGTCTTGCGTTGGGAAATCG.......................................................................................................................................................................................................................................................................................................................2111.0010000000010
...........................................................................................................................................................................................................................................................................CTTGCGTTGGGAAATCGG---------------------AA...............................................................................................................................................................................................................................................................................................2011.0010000001000
................................................................................................................................................................AAT---------------------GCGATTCTGTCTGACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...........................................................................................................................................................................................................................................................................................................................AGTTTGTGGCAAGGCGTAATG...................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................C------------------------------------CT---------CTTGCAAAGGATGCGCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
.............................................................................................................................................................TGGAAT---------------------GCGATTCTGTCTGAC............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATACT------GTTTTACTTACG.........................................................................................................................................2011.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCATGGATGTGGGGG.....................................................................................1911.0010100000000
.................................................................................................................................................CTTCTGTCCTGCTGGAAT---------------------GCG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
................................................................................................................................................................AAT---------------------GCGATTCTGTCTGACTGGG........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
............................................................................................................................................................................................TTCTGTCTGACTGGGATT---------------------------------------------------------CC..........................................................................................................................................................................................................................................................................................................................................2011.0010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------AT----TATATACT------GTTTTACTT............................................................................................................................................2111.0010000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCATAGGACGAGACGC........................................2111.0010000000010
.....................................................................................................................................................TGTCCTGCTGGAAT---------------------GCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
...................................................................................................................................................TCTGTCCTGCTGGAAT---------------------GCG........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000010
..................................................................................................................................................................................................CTGACTGGGATT---------------------------------------------------------CCGTCTTGCG..................................................................................................................................................................................................................................................................................................................................2211.0010000000010
...............................CAAAAGATGCGG-CG---------------------GCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................................................................................................................................................................................................................................................................TTGCGTTGGGAAATCGG---------------------ATAC.............................................................................................................................................................................................................................................................................................2111.0010000000010
............................AGTCAAAAGATGCGG-CG---------------------GCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.6720200000000
.........AGATTGTTGTCGATGGCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTCGGCGGCGCATG...............................................................................................1920.5010000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCCAGCGTTTGATTCGG........................................................................................................2160.5030000000030
.......TGAGATTGTTGTCGATGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.5020200000000
...................................................................................................................................TTGCAAAGGATGCGCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010001000000
............................................................................................................................................................................................................................................................................................G---------------------ATACGACTCAGTTTGTGGCA.............................................................................................................................................................................................................................................................................2120.5010100000000
.........AGATTGTTGTCGATGGCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTCGGCGGCGCATG...............................................................................................2020.5010000000010
.......TGAGATTGTTGTCGATGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.5020200000000
..................................................................................................................................CTTGCAAAGGATGCGCTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
...........ATTGTTGTCGATGGCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000001000
........GAGATTGTTGTCGATGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.5022000000000
........................GCCAAGTCAAAAGATGCGG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310100000000
.........................CCAAGTCAAAAGATGCGG-CG---------------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310100000000
.....................ATGGCCAAGTCAAAAGATGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000001000
.......................................................................................................................................................................................................................................................................................AATCGG---------------------ATACGACTCAGTTTC..................................................................................................................................................................................................................................................................................2130.3310000000010
...........................AAGTCAAAAGATGCGG-CG---------------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000010
...........................................................................................................................................................................................ATTCTGTCTGACTGGGATT---------------------------------------------------------C...........................................................................................................................................................................................................................................................................................................................................2030.3310000000010
..GTCCTTGAGATTGTTGTCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310100000000
.AGTCCTTGAGATTGTTGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
.AGTCCTTGAGATTGTTGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000010
.......TGAGATTGTTGTCGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000010
.........................................................................................................................................................................................CGATTCTGTCTGACTGGGATC---------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................2140.2510100000000
...TCCTTGAGATTGTTGTCGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000010
..........................................................................................................................................GGATGCGCTTCTGTCCTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
......TTGAGATTGTTGTCGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510100000000
...............................................................................................................................................CGCTTCTGTCCTGCTGGAAA---------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000001000
........GAGATTGTTGTCGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000010
........GAGATTGTTGTCGATGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
.....CTTGAGATTGTTGTCGATGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510100000000
...............................................................................................................................................CGCTTCTGTCCTGCTGGAAT---------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000010
.........AGATTGTTGTCGATGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010100000000
............TTGTTGTCGATGGCCAAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTACGCGTCTCGAAG...............................................................................................................................2080.1310000001000
.............................................................................................................................................TGCGCTTCTGTCCTGCTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAGCGTTTGATTCGG........................................................................................................2090.1110100000000
...........ATTGTTGTCGATGGCCAAGTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTCTCGAAGCTGAAGCCC......................................................................................................................21130.0810100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACGCGTCTCGAAGCTGA...........................................................................................................................21150.0710100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCGAAGCTGAAGCCC......................................................................................................................19170.0610000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCGAAGCTGAAGCCCA.....................................................................................................................20170.0610000001000
............................................................................................................................................ATGCGCTTCTGTCCTGCTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510100000000
droPer2
AAGTCCTTGAGATTGTTGTCGATGGCCAAGTCAAAAGATGCGG-CG---------------------GCTTGGTAGGTTCGGC------------------------------------CT---------CTTGCAAAGGATGCGCTTCTGTCCTGCTGGAAT---------------------GCCATTCTGTCTGACTGGGATT---------------------------------------------------------CCGTCTTGCGTTGGGAAATCGG---------------------ATACGACTCGGT----GGCAAGGCGTAATGTACATAT----GTACATAAGTTTGCTGTGAT-------GGAAGAAATATT--------TTTTTT-----AAATATATTCATA--------ATTA----TATACT------TTTTTACTTACGCGTCTCGAAGCTGAAGCCCAGCGTTTGATTCGGCGGCGCATGGATGTGGGGGTTGCTGACATTATTTCACTAGTCCCTGCTGCATAGGACGAGACGCCACATTGCCGACTCAGCGACACAGCAGCGGCATCAGGAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCATGGATGTGGGGGTTG..................................................................................2112.002000002
..................................AAGATGCGG-CG---------------------GCTTGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................GTCTTGCGTTGGGAAATCG.......................................................................................................................................................................................................................................................................................................................1911.001000001
................................AAAAGATGCGG-CG---------------------GCTTGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGTGGGGGTTGCTGAC.............................................................................2111.001000001
..............................................................................................................................................................................................................................................................................GCGTTGGGAAATCGG---------------------ATACGA...........................................................................................................................................................................................................................................................................................2111.001000001
.....CTTGAGATTGTTGTCGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGGGTTGCTGACATGT.........................................................................2120.501000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCCAGCGTTTGATTCGG........................................................................................................2150.402000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCGACACAGCAGCGGCA........2150.201010000
droWil2
AAATCTTTCAGATAGTTATCAATGGCCAAGTCAAATGTGGATGATG---------------------GCTTATTTGGATTAGGTTCTCCTCCAGCATAGGCCTTGGACTGTGCTTGAGGTTCTTCGGGTATTGGTATGGAATAGCTCTCAGTTTGTGTGGGAT---------------------AGGCTTGTGTTTGACTAGGAT-------------------------------------------------------------------------------------------------------AGGATTCGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAATCCTTGAGATAGTTATCGATAGCCAGGTCGAAGGATGACGCGG---------------ACTCTGGTTTTATCGAATTCGACTCGGGTGTCTCGTATGACTTGTCC------------------------------GGATATGCCTCCGTCTGCGTGGGAT---------------------ATGCCTCGGTCTGGGG-------------------------CATGGGCAATGGCACTGGCTGGGGCTCGGGCTGGGACTCAGGCTCGGGCTCGGGCGCTGG---------------------ATACGATTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TGCTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTGTGAGCAGTTGAA-AAGAGAAACTCAATTGAAATTTG------AAACATGATCAAACC--GA--TT------TATAC-------TCTCTACTCACGCGTCTCGAAGCTGAAGCCTAGCGTTGGGTCTGGCGGCGTATTGA---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAATCCTTTAGATAATTATCGATAGCCAGATCGAAGGAGGAAGACGACGACGGCGGCGGCGATTGTGGTTTAATCGAATTCGATTCGGGTGACTCGTAGGATTTGT------------------------------CGG---------------------GAT---------------------ACGACTCGGTCTGGGTGGGATATGCCTCAGT--------------------------------------------------------------------------------TTGTGGCATG-----------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AAGTCCTTCAGGTAGTTGTCAATGGCCAGGTCGAAGGTGGAGGATG---------------------GCTTGTCCGGTCCGGGTACGGAGTTGTCGTAAGTCTTTACCGGGGCCGGAGGAG---------GTGGCACGGGATACGATTCCGTTTGCGGGGCAT---------------------ACGACTCCGTGTGGCTGGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................ATGGCCAGGTCGAAGGTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000010
droBip1
AAGTCCTTCAGGTAGTTGTCTATGGCCAGGTCGAAGGTGGAGGATG---------------------GCTTGTCCCGACCGGGAACGGAGTTATCGTAGGTCTTCACCGGGGCAGGAGGCG---------GTGGCACAGGATAGGATTCAGTTTGCGGAGCAT---------------------ACGACTCCGTGTGGTTGGGATAGGACTCCGTGGCGGTGGGAT-------------------------------------------------------------AGGTCTCCTTG------GGGTAAGACTCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGTCCTTCAGATAGTTATCTATGGCTAGATCAAAGTTGGACGATG---------------------GCTTGTCCGCTCCGGACTCCAGACTGCCGTAAGACTTGGCCTGCGGCTGT---------------GGGGACTGATAGGATTCCGTGATGCTGGGAT---------------------AGGACTCGGTCTGGCTGGGATAGGACTCTGTGATGCTG-------------------------------------------------------------GGATAGGACTCTTTGTGGCTGG-----------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAGTCCTTCAGGTAGTTATCGATGGCCAGATCGAAGGTTGAGGATG---------------------GCTTGTCGGGACCCGATTCGGGTGCTCCATATGGCTTCACCTCCGGCTGGGGCT---------GTGGCACAGGAC------------TCGGCTGAT---------------------AGGACTCGGTCTGGCTGGGATACGATTCCGTGATGCTGGGAT-------------------------------------------------------------AGGAATCCTTG------GGATACGATTCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCTCTTTGGA-------AAGG-CAAGATA--------TTTTGGCTATCAGTTTTGACCATTAT--G---TATGTGTAT----ATAACGTCTTCTACTTACGCGTCTCAAAACTAAAGCCCAGCGTTGGATCTGGCGGCGTATTGAGCATGGAGTTGCCGACATT--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAGTCCTTCAGATAGTTATCGATGGCCAGGTCAAAGGTCGAGGATG---------------------GCTTATCAGGGCCGGATTCGGGTCCACCATATGGCTTAACCTCCGGCTGAGGTT---------CCGGTACGGGATAGTTCTCCGTACGGGGTTGATAGGCCTCCGTTTGGCTGGGATATGCCTCCGTTTGACTGGGATATGCCTCCGTGATGCTG-------------------------------------------------------------GGGTACGACTCCTTGTGGCTGG-----------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGTCCTTCAGGTAGTTATCAATGGCCAGGTCGAAGGTGGAGGATG---------------------GCTTATCGGGACCCGATTCGGGGCCACCATATGGCTTGACCTGCGGCTGTGGCT---------CCGGCACAGGGTAGGCCTCCGTGCGGGGTTGAT---------------------AGGACTCGGTTTGGCTGGGATATGACTCCGTGATGCTGGGAT-------------------------------------------------------------AAGAGTCCTTGTGGCTGGGATACGACTCCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTGTTGG-------AAGG-GAAGGAG--------CA-------TGAGTTATGATTAAAAT--AAAATATA--TAT--GAA----TTGATTTACTTACGCGTCTCGAAGCTAAAGCCAAGCGTTGGATCTGGCGGCGTGTTGAGCATGGAGTTG----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AC-----TGTTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTACGCGTCTCGAAACTAAAGCCCATCGTTGGGTCTGGCGGCGTGTTGAGCATGGAATTGCTGACATT--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AAGTCCTTCAGATAATTATCGATGGCCAGATCGAACGTGGACGATG---------------------GCTTATCGGGTCCAGAATCGGGACCACCATATGGCTTGATCTCCGGTTGG---------------GGTACGGGATAGGCTTCCGTACGCGGTTGAT---------------------AGGACTCAGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................TGGCCAGATCGAACGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
droSim2
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTATGGT-------AATAAAAAGGAA--------TTTTGA-----AGTTATATCCAAAAT--A---AATATG----TGTG------CCAGTACTTACGCGTCTCGAAGCTGAAGCTCAGCGTTGGGTCCGGCGGCGTGTTGAGCATGGTGTTGCTGACATT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTATGGA-------AATAAAAATGAA--------TTTTGA-----AGTTATAACCAAAAT--A---AATATG----TGTG------CCAGTACTTACGCGTCTCAAAGCTGAAGCTCAGCGTTGGGTCCGGCGGCGTGTTGAGCATGGAGTTGTTGACATT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAAGTCCGCTGTGCA-------AATA-AAACAAA--------TTTTAT-----AATTATAAGTAAAATGCA---TATA--TAT--GTG------CTGGTACTTACGCGTCTCGAAGCTGAAGCTCAGCGTTGGGTCTGGCGGCGTGTTGAGCATGGAGTTGCTGACATT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAGTCCTTCAGATAATTATCGATGGCCAGGTCAAAGTTGGAGGAGG---------------------GCTTGTCGGCGCCAGCATCGGGACCACCATAAGGCTTGACCTCCGGCTGA---------------GGCACGGGATAGGCCTCCGTACGGGGTTGAT---------------------AGGACTCGGTTTGGCTGGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:39 AM