ID:

dps_1411

 Coordinate:

4_group1:4113406-4113622 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dpse_GLEANR_16568:3]; CDS [Dpse\GA25198-cds]; CDS [Dpse\GA25198-cds]; exon [dpse_GLEANR_16568:2]; intron [Dpse\GA25198-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCTGCATCAAGTGCGACGGAAGGGAAGAGCTCTGCCCGTGGCTCAGACAGTGCTACGGAAAAGAAGAAGGGTTCCCCCCGTGGCTCGAATCAGAGTGTTCTATCTATTGCTAATGAAAGGAAGAAGAGTTCCCCCCGTGGCTCGAATCAGAGTGTTCTATCTATTGCTAAGGAAAGGAAGAAAAGTTCCCCCCGTGGCTCGAATCAGAGGGTTCAATCTTCAGGTATTGCTAAGGAAAAGAACAGTTCTCCTCGTGGCTCAGACAGTGCCGTAGCAGTTCGGAGTACAAGATCCTCAGTCAGTGCTACCGAGCGAA
**************************************************..(((((((...((((...(((....))).....(((......)))((((((.(((...((.((((....(((((.(((....(((..(((.((((...(((........)))...((((.((...((((......))))..)).)))))))).)))..))))))..)))))...))))))...)))..)))))).))))..)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 GSM343916
embryo
 V112
male body		 M040
female body
..............CGACGGAAGGGAAGAGCTCTG.......................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................ACGGACAAGAAGGAGGGTT................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0
.....................................................................................................................................................AGTGTGTACTATCTATTGC..................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0
............................................................................................AGTGTGTACTATCTATTGC.............................................................................................................................................................................................................. 19 2 2 0.50 1 0 1 0 0
.....................AGGGAAGAGCTCTGCCCGTGG................................................................................................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 1 0
.................CGGAAGGGAAGAGCTCTGCC........................................................................................................................................................................................................................................................................................ 20 0 5 0.20 1 1 0 0 0
.....................AGGGAAGAGCTCTGCCCGTGGC.................................................................................................................................................................................................................................................................................. 22 0 5 0.20 1 1 0 0 0
.........................................................................................................................................................................................................................CCTTCCGGTATTGCTAGGG................................................................................. 19 3 8 0.13 1 0 0 0 1
................................................................................................................................................................................................................................................GAACAGTTGTCCTCGTGCA.......................................................... 19 3 19 0.05 1 0 1 0 0
.......TCAAGTGTGACGGGAGGCA................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

AGGACGTAGTTCACGCTGCCTTCCCTTCTCGAGACGGGCACCGAGTCTGTCACGATGCCTTTTCTTCTTCCCAAGGGGGGCACCGAGCTTAGTCTCACAAGATAGATAACGATTACTTTCCTTCTTCTCAAGGGGGGCACCGAGCTTAGTCTCACAAGATAGATAACGATTCCTTTCCTTCTTTTCAAGGGGGGCACCGAGCTTAGTCTCCCAAGTTAGAAGTCCATAACGATTCCTTTTCTTGTCAAGAGGAGCACCGAGTCTGTCACGGCATCGTCAAGCCTCATGTTCTAGGAGTCAGTCACGATGGCTCGCTT
**************************************************..(((((((...((((...(((....))).....(((......)))((((((.(((...((.((((....(((((.(((....(((..(((.((((...(((........)))...((((.((...((((......))))..)).)))))))).)))..))))))..)))))...))))))...)))..)))))).))))..)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 GSM444067
head
 GSM343916
embryo
 SRR902010
ovaries
..........................................................................................................................................................................................................................................................GGAGCACCGAGTCTGTCACGGCA............................................ 23 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CATCGTCAAGCCTCATGTTCTAGG...................... 24 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................GAGTCAGTCACGATGGCTCGC.. 21 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................................TTTCTTGGCATGAGGAGC.............................................................. 18 2 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................GATTCAGTCACGGTGGCT..... 18 2 3 0.33 1 1 0 0 0 0 0
.................................................................................................CAACATAGATAACGATGACTG....................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................CGTCATCGTCAAGCTGCATGT............................ 21 3 3 0.33 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................................TTTCTTGGCGAGAGGAGC.............................................................. 18 2 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GGCATCGTCAAGAGGCATGT............................ 20 3 5 0.20 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................GGCATGGTCAAGACTCA............................... 17 2 20 0.10 2 0 0 0 0 0 2
..............................................................................................................................................................................................................................................TTCTTGTCATGAAGACCAC............................................................ 19 3 18 0.06 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:4113356-4113672 - dps_1411 TCCTGCATCAAGTGCGACGGAAGGGAAGAGCTCTGCCCGTGGCTCAGACAGTGCTACGGAAAAGAAGAAGGGTTCCCCCCGTGGCTCGAATCAGAGTGTTCTATCTATTGCTAATGAAAGGAAGAAGAGTTCCCCCCGTGGCTCGAATCAGAGTGTTCTATC------TATTGCTAAGGAAAGGAAGAAAAGTTCCCCCCGTGGCTCGAATCAGAGGGTTCAATCTTCAGGTATTGCTAAGGAAAAGAACAGTTCTCCTCGTGGCTCAGACAGTGCCGTAGCAGTTCGGAGTACAAGATCCTCAGTCAGTGCTACCGAGCGAA
droPer2 scaffold_5:1150621-1150943 + ACCTGCATCAAGTGCAACGGAAGGGAAGAGCTCTGCCCGTGGCTCAGACAGTGCTACGGAAAAGAAGAAGAGTTCTCCAAGGGGCTCGAATCAGAGTGCTCTATCTATTGCTAAGCAAAGGAAGAAGAGCTCTCCCAGTGGCTCGAATCAGGCTATCCTATCTTCAGGTATTTCTAAGGAAAGGAAGAAGAGTTCCCCCCGTGGCTCGAATCACAGTGTCCAATCTTCACGTATTTCTAAGGAAAAGAACAGTTCTCCTCGTTGCTCAGACGGTGGCAGAGCAATTCGGAGTCCAAGATCTTCAGTCAGCGCTAGCGAACGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCCTGCATCAAGTGCGACGGAAGGGAAGAGCTCTGCCCGTGGCTCAGACAGTGCTACGGAAAAGAAGAAGGGTTCCCCCCGTGGCTCGAATCAGAGTGTTCTATCTATTGCTAATGAAAGGAAGAAGAGTTCCCCCCGTGGCTCGAATCAGAGTGTTCTATC------TATTGCTAAGGAAAGGAAGAAAAGTTCCCCCCGTGGCTCGAATCAGAGGGTTCAATCTTCAGGTATTGCTAAGGAAAAGAACAGTTCTCCTCGTGGCTCAGACAGTGCCGTAGCAGTTCGGAGTACAAGATCCTCAGTCAGTGCTACCGAGCGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............CGACGGAAGGGAAGAGCTCTG................................................................................................................................................................................................................................................................................................2111.0010000000010
.....................AGGGAAGAGCTCTGCCCGTGG.........................................................................................................................................................................................................................................................................................2150.2010000001000
.................CGGAAGGGAAGAGCTCTGCC..............................................................................................................................................................................................................................................................................................2050.2010000000010
.....................AGGGAAGAGCTCTGCCCGTGGC........................................................................................................................................................................................................................................................................................2250.2010000000010
droPer2
ACCTGCATCAAGTGCAACGGAAGGGAAGAGCTCTGCCCGTGGCTCAGACAGTGCTACGGAAAAGAAGAAGAGTTCTCCAAGGGGCTCGAATCAGAGTGCTCTATCTATTGCTAAGCAAAGGAAGAAGAGCTCTCCCAGTGGCTCGAATCAGGCTATCCTATCTTCAGGTATTTCTAAGGAAAGGAAGAAGAGTTCCCCCCGTGGCTCGAATCACAGTGTCCAATCTTCACGTATTTCTAAGGAAAAGAACAGTTCTCCTCGTTGCTCAGACGGTGGCAGAGCAATTCGGAGTCCAAGATCTTCAGTCAGCGCTAGCGAACGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 12:39 AM