ID:

dps_1408

 Coordinate:

4_group1:4083263-4083499 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.17 -5.0 -4.9

Flybase annnotation

CDS [Dpse\GA25200-cds]; exon [dpse_GLEANR_16571:3]; CDS [Dpse\GA25200-cds]; exon [dpse_GLEANR_16571:4]; intron [Dpse\GA25200-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGCCGAGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACCCCACCACCAACACAGACACCACCACCACCACTTTCAACTCCTCCAACGCACAACACAACAACAACACTGTAAATACAAGTACAAAAACAACAACCGAAAACGAAACCGAAACCACAGAGAACACCACATCAACTACAACCACTACAAAAACCACCTATGAGACCGAGACTGTTGTAGCAGCCGCAGAGTTAGTTCAGACCCAAACAATCCTAACCAATACGATCCTCCAGGCAGCAGAAGCAGCAGAAGAAGAAGCTCAAGTCGTTGAGGCAATCATTCA
**************************************************************************************************************************************************...........................................(((((((...............................))))))).****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902012
CNS imaginal disc
 M059
embryo
 V112
male body		 M062
head
 GSM343916
embryo
 GSM444067
head
.....................................................................................................................................................................................................................ATGAGACCGAGACTGTTGTAGC...................................................................................................... 22 0 1 4.00 4 0 4 0 0 0 0 0
.........................................................................................................................................................................................................................GACCGAGACTGTTGTAGCAGC................................................................................................... 21 0 1 3.00 3 1 2 0 0 0 0 0
.........................GATCAAGAACAAGTCGCAAAT................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................AGCAGAAGAAGAAGCTCAAGTCGT............... 24 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................ACCACCTATGAGACCGAGAC............................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
..GCCGAGTCCTCTGAGGCCGAACA........................................................................................................................................................................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTTGTAGCAGCCGCAGAGTTAGTTCA.................................................................................... 26 0 1 2.00 2 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................ATGAAGCTCAAGTAGTTGA............ 19 2 8 1.38 11 11 0 0 0 0 0 0
....................................................................................................................................................................................................................TATGAGACCGAGACTGTTGTAG....................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................ACAACCGAAAACGAAACCGA........................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.CGCCGAGTCCTCTGAGGCCGAA.......................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GATCCTCCAGGCAGCAGAA......................................... 19 0 1 1.00 1 0 0 0 0 0 0 1
............................................ATTGAGGTAAACCCCACCACC................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................AGTTAGTTCAGACCCAAACAATCCTA.................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...................CGAACAGATCAAGAACAAGTCGC....................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................AACCGAAAACGAAACCGAAACCACAGA.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.................................ACAAGTCGCAAATTGAGGTAAACCCCAC.................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
................................AACAAGTCGCAAATTGAGG.............................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................AACAACAACCGAAAACGAAACCGA........................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.......GTCCCCTGAGGCCGAACA........................................................................................................................................................................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATGAGACCGAGACTGTTGTAGCAGC................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................AACCGAAACCACAGAGAACACCAC......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................CACAACACAACAACAACGCTGTA................................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.................GCCGAACAGATCAAGAACAAGTCGCA...................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.................................ACAAGTCGCAAATTGAGGATA........................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................CCGAAACCACAGAGAACACCA.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................GACCGAGACTGTTGTAGC...................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GAGACCGAGACTGTTGTAGCAGCCGCA............................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................TACGATCCTCCAGGCAGCAGAAGCAGCAG.................................. 29 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................ATGAGACCGAGACTGTTGT......................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................CACAGAACACCACATCAACTACAAC............................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................GACCGAGACTGTTGTAGCA..................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0
.....GAGTCCTCTGAGGCCGAACA........................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTGTAGCAGCCGCAGAGTTAG........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
CCGCCGAGTCCTCTGAGGCC............................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................CAACAACCGAAAACGAAACCGAAACCA...................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.............................AAGAACAAGTCGCAAATTGAG............................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................AAACCACAGAGAACACCACATC...................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
..............GAGGCCGAACAGATCAAGAACAA............................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................TCCAACGCACAACACAACAACAACAC..................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................AAGAAGCTCAAGTCGTTGA............ 19 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GAAGCTCAAGTCGTTGAGGC......... 20 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGACTGTTGTAGCAGCCGCAGAGTTAG........................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................AACGAAACCGAAACCACAGA.................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CAGAAGCAGCAGAAGAAGAA.......................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GATCCTCCAGGCAGCAGA.......................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................ACAACAACCGAAAACGAAACCGAAA......................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
..................................CAAGTCGCAAATTGAGGTAAACCCCAC.................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
............CTGAGGCCGAACAGATCAAGAACAAGT.......................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GACCGAGACTGTTGTAGCAGCCGCAGA............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GAAGCTCAAGTCGTTGAGGCA........ 21 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................ACAGAGAACACCACATCAACTAC................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................TCAACTCCTCCAACGCACAACACAAC............................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
....CGAGTCCTCTGAGGCCGAACAGATCAAG................................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................TATGAGACCGAGACTGTTGTA........................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
.........................................CAAATTGAGGTAAACCCCAC.................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.................GCCGAACAGATCAAGAACAAGTCAC....................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................GCAGAAGCAGCAGAAGAAGAAGCT....................... 24 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................AACTCCTCCAACGCACAACACAACAACAA........................................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0
...................CTAACAGATCAAGAACAAGTC......................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
......AGTCCTCTGAGGCCGAACA........................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACCAGCCGCAGAGTTAGTTCAGACCC............................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0
............CTGAGGCCGAACAGATCAAGAAC.............................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AACCAATACGATCCTCCAGGC................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................CACTACAAAAACCACCTATGAGA...................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................AGACCGAGACTGTTGTAGCAGCC.................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................ATACGATCCTCCAGGCAGCAGAAGCAGC.................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GATCCTCAAGGCAGCAGA.......................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
..GCCGAGTCCTCTGAGGCCGAACAG....................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................CTCCAACGCACAACACAACAACAA........................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................AATACGATCCTCCAGGCAG.............................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................CACCACTTTCAACTCCTCCAACGC....................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................AAACGAAACCGAAACCACAGA.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................GAACAAGTCGCAAATTGAGG.............................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................CAGGCAGCAGAAGCAGCAG.................................. 19 0 2 0.50 1 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................................TAAAAGAAGCTCAAGTAGTTG............. 21 3 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................AGAAGCAGCTGAAGAAGAAG......................... 20 1 8 0.13 1 1 0 0 0 0 0 0
..............................................................................................................................................GACAACAACCGAAAAGGA................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GGCGGCTCAGGAGACTCCGGCTTGTCTAGTTCTTGTTCAGCGTTTAACTCCATTTGGGGTGGTGGTTGTGTCTGTGGTGGTGGTGGTGAAAGTTGAGGAGGTTGCGTGTTGTGTTGTTGTTGTGACATTTATGTTCATGTTTTTGTTGTTGGCTTTTGCTTTGGCTTTGGTGTCTCTTGTGGTGTAGTTGATGTTGGTGATGTTTTTGGTGGATACTCTGGCTCTGACAACATCGTCGGCGTCTCAATCAAGTCTGGGTTTGTTAGGATTGGTTATGCTAGGAGGTCCGTCGTCTTCGTCGTCTTCTTCTTCGAGTTCAGCAACTCCGTTAGTAAGT
******************************************************************************************************...........................................(((((((...............................))))))).************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 GSM343916
embryo
 SRR902012
CNS imaginal disc
........................................CGGTTAACTCGATGTGGGG...................................................................................................................................................................................................................................................................................... 19 3 16 1.31 21 21 0 0 0 0
...............................................CTCCATTTGGGGTGGTGGTTG............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GTCGTCTTCTTCTTCGAGTTC................... 21 0 1 1.00 1 1 0 0 0 0
.............................................................GTGGTTGTGTCTGTGGTGGT................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
............................................................GGTGGTTGTGTCGGTGGTTCTGGT............................................................................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0
........................................................................................AATGTTTGGGAGGTTGCGTGTT................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................................TGGTGTCTCTTGTGGTGTAGT..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..........................................................................TGGTGGTGGTGGTTAAAGTTA.................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 1 0
.............................................................................................................................................................................................................................................................CTGGGTTTGTTAGGATTGGTT............................................................... 21 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................................................................GCCTCAATGAGGTCTGGGTTT............................................................................ 21 3 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................GTTGATGTTGGTGATGTTTTT.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................TTTACTTCGAGTTCATCAACTC........... 22 3 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................CATTGGTGTCTTTTGTAGTGT........................................................................................................................................................ 21 3 6 0.50 3 2 1 0 0 0
.........................................................................................................................................................................................................................CTGGCTCCGACAAGATCGT..................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................................................................CCTCAATGAGGTCTGGGTTT............................................................................ 20 3 9 0.22 2 1 1 0 0 0
......................................................................................................................................................................TTGGTGTCTTTTGTAGTGT........................................................................................................................................................ 19 2 11 0.18 2 2 0 0 0 0
............................................................................................................TTGTGGTATTGTTGTGACGTT................................................................................................................................................................................................................ 21 3 7 0.14 1 0 0 1 0 0
......................................................................................................................................................................................................................................CATAATCGGAGTCTCAATCA....................................................................................... 20 3 7 0.14 1 1 0 0 0 0
...............................................................GGTTGTGTCCGTGGTGGTGGGTG........................................................................................................................................................................................................................................................... 23 3 8 0.13 1 1 0 0 0 0
................................................................................................................................................................................................................................................................GGTTTTTTAGCATTGGTTATA............................................................ 21 3 9 0.11 1 1 0 0 0 0
..................................................................................................................................................................................................TGGTGATGTGATTGGTGGG............................................................................................................................ 19 3 20 0.10 2 2 0 0 0 0
.....................................................................GTCTGGGGTGGTGGTGTTG......................................................................................................................................................................................................................................................... 19 2 15 0.07 1 1 0 0 0 0
....................................................................................................................................................................................................GTGATGTTTCTGGTGGTT........................................................................................................................... 18 2 16 0.06 1 1 0 0 0 0
.................................................................GTGTGTCTGTGGTAGTGGT............................................................................................................................................................................................................................................................. 19 2 20 0.05 1 0 1 0 0 0
.......................................................................................................................................CAGGTTTTTGTTGTGGGCC....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
.......................................................................................................................................................................TGGTGTCTTTTGTAGTGT........................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:4083213-4083549 - dps_1408 CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACC-CC--------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACACAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCGAAAACG---------------AAACCGAAACCACAGAGAACACCACATCAACTACA------------------------------ACCACTACAAA---AA---------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACC---------AATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGCAGAAGAAGAAGCTCAAGTCGTTGAGGCAATCATTCA
droPer2 scaffold_5:1181239-1181575 + dpe_1747 CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACC-CC--------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACACAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCGAAAACG---------------AAACCGAAACCACAGAGAACACCACAACAACTACA------------------------------ACCACTACAAA---AA---------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACC---------AATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGCAGAAGAAGAAGCTCAAGTCGTTGAGGCAATCATTCA
droWil2 scf2_1100000004945:318466-318832 + CCGCTG------AAT---CCGAGGCCGAGCAAATCAAGAACAAGTCGCAAATTGAGGTAAACC-A-----------------AATAGACATCACACCC-T--------------CTAACAACAACG---C---ACACAACAACA----ACAACGACACTGTAAATACGAGTACAAAAACATTAACAACAGA------------------AACAGAAACCACCGAAACAAC---------AACA------------------------------ATAATAACAAC---A---------------ACAGCCACTGAGACCG---AAACCACCATTG---CAGCCGCAGATTTAGTTCAGACCCTAA---CCAA------CACC---------------ACCACCACCACCACCAATACAGTCCCAACAATCCCA---CCACC------TAGCCACACCACTGACA--------------------------------------C-CAACAA---------CACAAACATCACAGATA---------------------------CTT------------------------------TGCCAGGCGAAG-AAGAAGAACAAGTGGTCCAAGCAATTATTGC
droVir3 scaffold_12723:3024851-3025187 + TCGCCGAATCCGAGA---CCGAGGCCGAGCTAATTAAGAACAAGTCGCAAATCGAGGTAAAACAAC--------AACA----ACTAGACACCA----------------------------------------------CAGCAAACAACCAGAACACTGTAAATACGAGTATCACAACAACAACAACAAG------------------AACCACAGCCACTGAGAACACCACAAT------------------------------------------------------------------CACAATCACTGAGACAG---AGACCATTG------CCGCCGCAGAGTTAGTTCAGACCCAAT---CAACCAACACCCAAAATAACAC------------AATAC------CTAACATCACCACCACCAACACCAAGAC---------------------CACCACCGACAATTCCGTTTATCTTCCCACCTCCCAAGCGCAGGACGAAGTGCAAGCC------------GAC----------------------------------------------------------------------------------------------GCCGACGCCGA
droMoj3 scaffold_6500:6843208-6843537 - C----------GAGT---CTGATGCCGAGCAAATTAAGAACAAGTCGCAAATTGAGGTAAAACAA---------------------------------------------------------------CA---ACTAGACAACA----CAAACAACACTGTAAATACGAGTACCACCACAACAACAACAAC------------------AACAAACGCCACTGAGAACAA--CACTGA----------------------------------------------------------------AAAAACCACAGAGACCG---AAACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAC---AAGCCAACTCCCAAAATAACACACTACCACCTAACACAACCGACACAACC------------------------------------------------ACCGACAATTCCGCTTATCTTCCCACCTCCCAAGCGCAGGACGAAGTGCAAGCG------------GATG---------------------------T-------------------------------------CGCCGAAGAA---GAACAAGTGGTTGCCGCTATTAT---
droGri2 scaffold_15126:457846-458182 - CTGTCG------AGT---CCGAGGCCGAGCAAATTAAGAACAAGTCGCAAATCGAGGTAAAAC------------------AAATAGACACCACCACC------------------------------AC---AAACAACAACA----ACAACAATACTGTAAATACGAGTACCACAACAACAACA---GC------------------TACAGAGAACAAC---AACACCAC------AATC------------------------------ACAACAACTGA---AAAAACAACAACAACCACAACCACTGAGACCG---AGACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAACCACAAT------CCAAAATAACAC------------AATACCTAACACAGCCAATACCACAACCAACACCACAACCAATAC----CAC--------AACCACCGACAATTCC----------------------------------------------------------------------------------------------------------------------------------------GTCCAACTTCCCAACACTACTGTCCA
droAna3 scaffold_12916:10083192-10083553 + -----------G------------------AGGCCGAAAAGGGACAACCAATCGAGGTAAAGA-GC--------TTTAC---AACCGACTGCACTACA-C--------------CCAACCA------------CAACAACAATA----AACACCACACTGTAAATACCAGTACAAGAATAACC------GC------------------CACAGAAATCACTGAGAACATTGCACAAAAAATAACCCGAACC------------GAAACTGAAACTGAAACAGA---GACAG--AGACC-ATTACTAGCACTGGGACAGATGAGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------T-CGAAGACGTGAAAGCG------------GAAG-------------------------------------------------C---------CAGTCAAGCCGAG------GAGGAAGTGGTAGCGGCCATCATTCA
droBip1 scf7180000396580:952281-952664 - C----------G------------------AATCCGAGAAAGGACAACCAATCGAGGTAAAG------------CTCTTAACAAATGACTGCACTACA-C--------------CCAACCA------------CAACAACAATA----AACACAACACTGTAAATACCAGTACAACAATAACC------GC------------------CACAGAAATCACTGAGAACATTGCACAAAGAATAACCCGAACCCGTACCAGAACAGATACCATAACAGGGACTGA---GACAGAG---ACTACAACTAGCACTGAGACAG---AGACTGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCTCACGCAGGC---------------------CG--------------------------------------A-CGATGACGTGAAAGCG------------GAAG---------------------------CCGTT---A------CTG-TCCC---------CAGTCAAGCCGAG------GAGGAAGTTGTAGCGGCCATCATTCG
droKik1 scf7180000302412:561656-561982 + T----------G------------------AGGCCGAGAAGGGGCAGCAAATTGAGGTAAAG------------CACACAAGTACAGACAGCACC---------------------------------------------AGCG----AAAACTACACTGTAAATACAACAACAACAACAACC------AC------------------TACCGAAATCACAGAGAACACTGCACACAGAACA------------------------------ATAACAACAGAATTAACAGAAAGAACATGCACAAGCACCAAGACAGAAGCGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCGAAACAACCAACACGATCCTTTCCACCTCCCAAACGCAGGC----------------------A--------------------------------------C-CA--------------------------GAGG---------------------------CCAT----------------------CAGCAGCAGCCAAGCGGAG------GAGGAAGTTGTGGCTGCGATCATCCA
droFic1 scf7180000454117:78601-78981 + T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCAACAC--------------A-------------CA---CAATAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACTAA------------AGCAACAACCGAATTCACAGAGAACACAGCACTAAAAACA------------------------------ATAAGTACAGA---AACCGAAAGAACTTGCACTAGCACTGTGACCG---AGACCGTTGTAG---AAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCCTTCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGCGAAGTGATTGAAG------------------------------------------CAGTGACCAGCATCACC-AC--C-AGCAGCAGCAGCCAAGCCGAG------GAGGAAGTTGTGGCGGCGATCATCAA
droEle1 scf7180000491186:1217562-1217940 + ------------------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACTACA-C--------------ACAACAA------------CAACAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAACACCAACAAACACAAAAACAACAACCGAAATCACAGAAAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---AACCGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAT---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CA---------TTGAAG------------------------------------------CAGTTACCACGACCACT-ACCAC---------TAGCCAAGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAA
droRho1 scf7180000771933:94829-95168 + ------------------------------AGAACGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCACA------------------------------CA---CAGCAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAGA---AC------------------AACCGAAATCACAGAAAACACTGCACTAAAAACA------------------------------ATAAATACAGA---AACAGAAAGAACTTGCACAGGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAATGA---------AG------------------------------------------CAGT-------------TACCAC---------CAGCCAAGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAA
droBia1 scf7180000301500:214326-214736 - T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACA-ACACAGCA--AACACAAGAACAGACTGCACCACA-----------------CAACAACAA----CA---ACACTACAGCA----AAAACTCCACTGTAAATACAAGTACAACAACAACAACAGCAACTA---------AAACCACAACTGAAATCACAGAGAACACTGCACTTAAACAA------------------------------ATAAGTACCGA------------------CACAAGCACTGTGACCG---AGACCTTAGTAGCCGCAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAACGAGGTGATTGAAG-CAG-----CAGCAGCGGCAGTAGAAGCAGCGGCAGCCGCAGCAGT-------------GGCCGCCACCAGCAGCAGCCAGGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAA
droTak1 scf7180000415629:145591-145958 + -----------G------------------AGACCGAGAAGGGACAACAAATTGAGGTAAACA-AC-----AAGCACACAAGAACAGACAGCACCACCAC--------------A-------------CAAGAACACAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAAAAAC---------------CACAACCGAAATCACAGAGAACACTGCACTAGAAAAT------------------------ACT---AAAAGTACAGA---AACAGAA---------ACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CAGCA-----------------------------------G-CAGCGAAGTGATTGAAG------------------------------------------CAGCA---G-CA---GTGTCCAC---------CAGCCAAGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAA
droEug1 scf7180000409461:453745-454105 + ------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACA-ACCAA--AACCACACAAGAACAGACAGCACCACA------------------------------CA---ACACAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACAAC------------------AACCGAAATCACAGAAAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---AACAGAAAGAACATGCACAAGCACAGTGACCG---AGACCGTTCTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAACGAAGTGATTGAA------------GAAG---------------------------CAGT-------------GACCAA---------CAGCCAGGCGGAG------GAGGAAGTTGTGGCGGCTATTATCAA
dm3 chr2L:8428042-8428390 + ------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAACACCACA------------------------------CA---ACACAACAGCA----AAAACATCACTGTAAATACAAGTACAACAACAACAAAA---AC------------------AACCGAAATCACAGAGAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---TACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACAAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCAATCATCAA
droSim2 2l:8154981-8155343 + dsi_13324 G----------------------GCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCACA------------------------------CA---ACACAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACAAAAA---------------CAACCGAAATCACAGAGAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---TACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACAAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCGATCATCAA
droSec2 scaffold_3:3924316-3924678 + dse_1182 G----------------------GCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCACA------------------------------CA---ACACAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACAAAAA---------------CAACCGAAATCACAGAGAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---TACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACAAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCGATCATCAA
droYak3 2L:11065979-11066335 + G----------------------GCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACCGACAGCACTACA------------------------------CA---ACACAACAGCA----AAAACAACACTGTAAATACAAGTACAACAACAACAAAA---AC------------------AACCGAAATCACAGAGAACACTGCACAAAAAACT------------------------------ATAAGTACAGA---AACAGAAAGAACTTGCACAAGCACTGTGACTG---AGACCGTTGTAG---TAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCAATCATCAA
droEre2 scaffold_4929:17336751-17337107 + der_1343 G----------------------GCCACGGAGATCGAGAAAGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACTGACAGCACCACA------------------------------CA---ACACAACAGCA----AAAACCACACTGTAAATACAAGTACAACAACAACAAAA---AC------------------AACTGAAATCACAGAGAACACTGCACTAAAAACT------------------------------ATAAGTACAGA---AACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------AACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCAATCATCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACC-CC--------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACACAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCGAAAACG---------------AAACCGAAACCACAGAGAACACCACATCAACTACA------------------------------ACCACTACAAA---AA---------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACC---------AATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGCAGAAGAAGAAGCTCAAGTCGTTGAGGCAATCATTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................ATGAGACCG---AGACTGTTGTAG---C.............................................................................................................................................................................................................................................................................................................2214.0040000000004
..........................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---CAGC..........................................................................................................................................................................................................................................................................................................2113.0030100000002
...............................GATCAAGAACAAGTCGCAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAGAAGAAGCTCAAGTCGT...............2412.0020200000000
................................................................................................................................................................................................................................................................................................A---------------CCACCTATGAGACCG---AGAC.........................................................................................................................................................................................................................................................................................................................2012.0020200000000
..GCCG------AGTCCTCTGAGGCCGAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
.......................................................................................................................................................................................................................................................................................................................................GTTGTAG---CAGCCGCAGAGTTAGTTCA...........................................................................................................................................................................................................................................................................................2612.0020100001000
.....................................................................................................................................................................................................................................................................................................................TATGAGACCG---AGACTGTTGTAG---..............................................................................................................................................................................................................................................................................................................2211.0010000000001
....................................................................................................................................................................................ACAACCGAAAACG---------------AAACCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.CGCCG------AGTCCTCTGAGGCCGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAA.........................................................................................................1911.0010000010000
..................................................ATTGAGGTAAACC-CC--------ACCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................AGTTAGTTCAGACCCAAA---CAAT------CCTA---------------...................................................................................................................................................................................................................................................2611.0010100000000
.........................CGAACAGATCAAGAACAAGTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
......................................................................................................................................................................................AACCGAAAACG---------------AAACCGAAACCACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......................................ACAAGTCGCAAATTGAGGTAAACC-CC--------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
......................................AACAAGTCGCAAATTGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................AACAACAACCGAAAACG---------------AAACCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................................ATGAGACCG---AGACTGTTGTAG---CAGC..........................................................................................................................................................................................................................................................................................................2511.0010000000001
.................................................................................................................................................................................................................AACCGAAACCACAGAGAACACCAC......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................GCCGAACAGATCAAGAACAAGTCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................CCGAAACCACAGAGAACACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
..........................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---C.............................................................................................................................................................................................................................................................................................................1811.0010000000001
........................................................................................................................................................................................................................................................................................................................GAGACCG---AGACTGTTGTAG---CAGCCGCA......................................................................................................................................................................................................................................................................................................2711.0010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TACGATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGCAG..................................2911.0010000000001
......................................................................................................................................................................................................................................................................................................................ATGAGACCG---AGACTGTTGT...................................................................................................................................................................................................................................................................................................................1911.0010000000001
..........................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---CA............................................................................................................................................................................................................................................................................................................1911.0010000001000
.....G------AGTCCTCTGAGGCCGAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................TTGTAG---CAGCCGCAGAGTTAG...............................................................................................................................................................................................................................................................................................2111.0010100000000
CCGCCG------AGTCCTCTGAGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................CAACAACCGAAAACG---------------AAACCGAAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...................................AAGAACAAGTCGCAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................AAACCACAGAGAACACCACATC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
....................GAGGCCGAACAGATCAAGAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.................................................................................................................TC------CAACGCACA---ACACAAC----------AACAACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGCTCAAGTCGTTGA............1911.0010000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCAAGTCGTTGAGGC.........2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................G---AGACTGTTGTAG---CAGCCGCAGAGTTAG...............................................................................................................................................................................................................................................................................................2811.0010100000000
.............................................................................................................................................................................................AACG---------------AAACCGAAACCACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------GAAG---------------------------C-------------------------------------AGCAGAAGAAGAA..........................2011.0010000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GA..........................................................................................................1811.0010100000000
.................................................................................................................................................................................ACAACAACCGAAAACG---------------AAACCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
........................................CAAGTCGCAAATTGAGGTAAACC-CC--------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
..................CTGAGGCCGAACAGATCAAGAACAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---CAGCCGCAGA....................................................................................................................................................................................................................................................................................................2711.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCAAGTCGTTGAGGCA........2111.0010100000000
...........................................................................................................................................................................................................................ACAGAGAACACCACATCAACTAC.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
.........................................................................................................TCAACTCCTC------CAACGCACA---ACACAAC----------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....CG------AGTCCTCTGAGGCCGAACAGATCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.....................................................................................................................................................................................................................................................................................................................TATGAGACCG---AGACTGTTGTA..................................................................................................................................................................................................................................................................................................................2111.0010000000001
...............................................CAAATTGAGGTAAACC-CC--------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CA--------------------------GAAG---------------------------C-------------------------------------AGCAGAAGAAGAAGCT.......................2411.0010000001000
...........................................................................................................AACTCCTC------CAACGCACA---ACACAAC----------AACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
............AGTCCTCTGAGGCCGAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................CTGAGGCCGAACAGATCAAGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................A---------------ACC---------AATACGATCCTC---------------CAGGC----------------------.................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................CACTACAAA---AA---------------CCACCTATGAGA...................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.........................................................................................................................................................................................................................................................................................................................AGACCG---AGACTGTTGTAG---CAGCC.........................................................................................................................................................................................................................................................................................................2311.0010001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGC....................................2811.0010100000000
..GCCG------AGTCCTCTGAGGCCGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................................................................CTC------CAACGCACA---ACACAAC----------AACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-........................................................................................................................................1911.0010100000000
.................................................................................................CACCACTTTCAACTCCTC------CAACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................AAACG---------------AAACCGAAACCACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................GAACAAGTCGCAAATTGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGCAG..................................1920.5010000010000
droPer2
CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACC-CC--------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACACAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCGAAAACG---------------AAACCGAAACCACAGAGAACACCACAACAACTACA------------------------------ACCACTACAAA---AA---------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACC---------AATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGCAGAAGAAGAAGCTCAAGTCGTTGAGGCAATCATTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................GTTGTAG---CAGCCGCAGAGT..................................................................................................................................................................................................................................................................................................1913.003000003
....CG------AGTCCTCTGAGGCCGAACAGATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
......................................AACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
..........................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---C.............................................................................................................................................................................................................................................................................................................1812.002200000
..............................................................................................................................................................................................................................................................................................................................G---AGACTGTTGTAG---CAGCCGCAGA....................................................................................................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------A......................................2611.001010000
..GCCG------AGTCCTCTGAGGCCGAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................GCAAATTGAGGTAAACC-CC--------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................CACCTATGAGACCG---AGACTGT......................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................GTACAAAAACAACAACCGAAAACG---------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
........................................................................................................................................................CAACACTGTAAATACAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............GTCCTCTGAGGCCGAACAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................CC---------AATACGATCCTC---------------CAGGC----------------------A--------------------------------------G-C.......................................................................................................................................2211.001010000
...............................GATCAAGAACAAGTCGCAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................................................................................................CCTC------CAACGCACA---ACACAAC----------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................TGTTGTAG---CAGCCGCAGAG...................................................................................................................................................................................................................................................................................................1911.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTC---------------CAGGC----------------------A--------------------------------------G-CA--------------------------GAAG---------------------------C-------------------------------------AGCA...................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAGAAGAAGCTCAAGTC.................2211.001010000
....................................................................................................................................................................................................................................................................................ACTACAAA---AA---------------CCACCTATGAGA...................................................................................................................................................................................................................................................................................................................................2211.001001000
..........................................................................................................................................................................................................................................................................................AA---AA---------------CCACCTATGAGACCG---AGACT........................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................AT------CCTA---------------ACC---------AATACGATCCTC---------------CA..........................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................AGACCCAAA---CAAT------CCTA---------------ACC---------AA.....................................................................................................................................................................................................................................2211.001100000
........................................................................................................TTCAACTCCTC------CAACGCACA---ACACAAC----------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.......................................................................................................................................................................................................................................................................................ACAAA---AA---------------CCACCTATGAGAC..................................................................................................................................................................................................................................................................................................................................2011.001010000
..................CTGAGGCCGAACAGATCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................TA---------------ACC---------AATACGATCCTC---------------CAGGC----------------------.................................................................................................................................................................................2211.001010000
...................TGAGGCCGAACAGATCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCAAGTCGTTGAGGC.........1911.001010000
.............GTCCTCTGAGGCCGAACAGATCAAGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..................................................ATTGAGGTAAACC-CC--------ACCACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droWil2
CCGCTG------AAT---CCGAGGCCGAGCAAATCAAGAACAAGTCGCAAATTGAGGTAAACC-A-----------------AATAGACATCACACCC-T--------------CTAACAACAACG---C---ACACAACAACA----ACAACGACACTGTAAATACGAGTACAAAAACATTAACAACAGA------------------AACAGAAACCACCGAAACAAC---------AACA------------------------------ATAATAACAAC---A---------------ACAGCCACTGAGACCG---AAACCACCATTG---CAGCCGCAGATTTAGTTCAGACCCTAA---CCAA------CACC---------------ACCACCACCACCACCAATACAGTCCCAACAATCCCA---CCACC------TAGCCACACCACTGACA--------------------------------------C-CAACAA---------CACAAACATCACAGATA---------------------------CTT------------------------------TGCCAGGCGAAG-AAGAAGAACAAGTGGTCCAAGCAATTATTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..GCTG------AAT---CCGAGGCCGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.50300102
..................................................................................................................................................................................................................................................................................................................GCCACTGAGACCG---AAACCACC.....................................................................................................................................................................................................................................................................................................................2121.00220000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAG-AAGAAGAACAAGTGGT...............2021.00200200
..................................CAAGAACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.00201010
..............................AAATCAAGAACAAGTCGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00200200
...........................................................................................................................................................................................CAGA------------------AACAGAAACCACCGAAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100010
..............................AAATCAAGAACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50101000
.....................................GAACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000
....................................AGAACAAGTCGCAAATTGAGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100001
...................CGAGGCCGAGCAAATCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100100
..................................CAAGAACAAGTCGCAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
...............................AATCAAGAACAAGTCGCAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------TGCCAGGCGAAG-AAGAAGAACAAGT..................2620.50100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AAGAAGAACAAGTGGTCCAA...........2220.50101000
...................................AAGAACAAGTCGCAAATTGAGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100
............................................................................................................................................................................................................................................................................................................................CCG---AAACCACCATTG---CAGCCGCA......................................................................................................................................................................................................................................................................................................2320.50101000
...........................................................................................................................................................................................CAGA------------------AACAGAAACCACCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000
.......................................ACAAGTCGCAAATTGAGGTAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100010
...........................AGCAAATCAAGAACAAGTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100100
...................................AAGAACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100100
..GCTG------AAT---CCGAGGCCGAGCAAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA---------------------------CTT------------------------------TGCCAGGCGAAG-AAGAAGAA.......................2720.50100100
.............................................................CC-A-----------------AATAGACATCACACCC-T--------------CTAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAAG-AAGAAGAACAAGTGGTCC.............2520.50100100
...................................AAGAACAAGTCGCAAATTGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000
.CGCTG------AAT---CCGAGGCCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA---------------------------CTT------------------------------TGCCAGGCGAAG-AAG............................2220.50100001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGGCGAAG-AAGAAGAACAAGT..................2520.50100100
........................................................................................................................ACAACG---C---ACACAACAACA----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010
......................................................................................................................................................................................AACAACAGA------------------AACAGAAACCACCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100010
......................................................................................................................................................AACGACACTGTAAATACGAGTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100
.........................................................................................................................................................................................................................................................................................................................................................GATTTAGTTCAGACCCTAA---CCAA------CA....................................................................................................................................................................................................................................................................2520.50101000
droVir3
TCGCCGAATCCGAGA---CCGAGGCCGAGCTAATTAAGAACAAGTCGCAAATCGAGGTAAAACAAC--------AACA----ACTAGACACCA----------------------------------------------CAGCAAACAACCAGAACACTGTAAATACGAGTATCACAACAACAACAACAAG------------------AACCACAGCCACTGAGAACACCACAAT------------------------------------------------------------------CACAATCACTGAGACAG---AGACCATTG------CCGCCGCAGAGTTAGTTCAGACCCAAT---CAACCAACACCCAAAATAACAC------------AATAC------CTAACATCACCACCACCAACACCAAGAC---------------------CACCACCGACAATTCCGTTTATCTTCCCACCTCCCAAGCGCAGGACGAAGTGCAAGCC------------GAC----------------------------------------------------------------------------------------------GCCGACGCCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................AG---AGACCATTG------CCGCCGCAGA....................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
.......................................ACAAGTCGCAAATCGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000010010000000000000000000000000
.........................................................................................................................................................................................AACAAG------------------AACCACAGCCACTGAGAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................CACAGCCACTGAGAACACC........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AACAAG------------------AACCACAGCCACTGAGAACACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACCTCCCAAGCGCAGGACGAAGTG..............................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CATTG------CCGCCGCAGAGTTAG...............................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CGCCGCAGAGTTAGTTCA...........................................................................................................................................................................................................................................................................................1811.001000000000000000000100000000000000000000000000000000000000000000
...............................AATTAAGAACAAGTCGCAAATCGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CAACAACAAG------------------AACCACAGCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CACTGAGACAG---AGACCAT......................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------CACCACCGACAATTCCGTT...............................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CACTGAGAACACCACAAT------------------------------------------------------------------CA...............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................CGCCGCAGAGTTAGTTCAGACCC......................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
.CGCCGAATCCGAGA---CCGAGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CATTG------CCGCCGCAGAGTTAGTTC............................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AAG------------------AACCACAGCCACTGAGAACACCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................AGACACCA----------------------------------------------CAGCAAACAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAAGCGCAGGACGAAGT...............................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACGAAGTGCAAGCC------------GAC----------------------------------------------------------------------------------------------GCC........2511.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGC.......................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCCAAGCGCAGGAC....................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................CAGAACACTGTAAATACGAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCTCCCAAGCGCAGGA.....................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAAGTGCAAGCC------------GAC----------------------------------------------------------------------------------------------G..........2011.001000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGCAGAGTTAG...............................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGCAGA....................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AG---AGACCATTG------CCGCCGCAGAG...................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGCAGAG...................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGAC---------------------CACCACCGACAG......................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.........................CGAGCTAATTAAGAACAAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCCAAGCGCAGGA.....................................................................................................................................1811.001000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................AAG------------------AACCACAGCCACTGAGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACCACAAT------------------------------------------------------------------CACAATCACTGAGACA.................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AG---AGACCATTG------CCGCCGCAGAGTT.................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ACAG---AGACCATTG------CCGCCGCA......................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CCCAAT---CAACCAACACCC....................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGCGCAGGACGAAGTG..............................................................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AAG------------------AACCACAGCCACTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................ACAAGTCGCAAATCGAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................................................................ACAACAACAACAAG------------------AACCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000000000000000010000000000000000000000000000000000
droMoj3
C----------GAGT---CTGATGCCGAGCAAATTAAGAACAAGTCGCAAATTGAGGTAAAACAA---------------------------------------------------------------CA---ACTAGACAACA----CAAACAACACTGTAAATACGAGTACCACCACAACAACAACAAC------------------AACAAACGCCACTGAGAACAA--CACTGA----------------------------------------------------------------AAAAACCACAGAGACCG---AAACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAC---AAGCCAACTCCCAAAATAACACACTACCACCTAACACAACCGACACAACC------------------------------------------------ACCGACAATTCCGCTTATCTTCCCACCTCCCAAGCGCAGGACGAAGTGCAAGCG------------GATG---------------------------T-------------------------------------CGCCGAAGAA---GAACAAGTGGTTGCCGCTATTAT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAAGTGCAAGCG------------GATG---------------------------T-------------------------------------.......................................2014.004100003
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAAGAA---GAACAAGTGGTTGCCGCT........2811.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCCAAGCGCAGGACGA..................................................................................................................................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGCAAGCG------------GATG---------------------------T-------------------------------------CGCC...................................2111.001000010
...................................AAGAACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACACAACC------------------------------------------------ACCGACAATTCCGCTTATC...........................................................................................................................................................2911.001000010
...............................................................................................................................................................................................................................................................................................................................................................GTTCAGACCCAAC---AAGCCAACC.......................................................................................................................................................................................................................................................................2211.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------GATG---------------------------T-------------------------------------CGCCGAAGAA---GAACAAGT..................2511.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGCGCAGGACGAAGTGCA............................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAAGCG------------GATG---------------------------T-------------------------------------CGCCGA.................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................GTTCAGACCCAAC---AAGCCAACTC......................................................................................................................................................................................................................................................................2311.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATCTTCCCACCTCCCAAGCGCAGGAC....................................................................................................................................2911.001100000
.........................................................................................................................................................................................................................................................................................................................................TG------CAGCCGCAGAGTTAGTTCA...........................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCACCTCCCAAGCGCAGGAC....................................................................................................................................2411.001100000
.....................................................................................................................................................................................................................AACGCCACTGAGAACAA--CACTGA----------------------------------------------------------------AAAA.............................................................................................................................................................................................................................................................................................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG---------------------------T-------------------------------------CGCCGAAGAA---GAACAAGTGGT...............2511.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCCAAGCGCAGGACGAAGTGCA............................................................................................................................2711.001010000
..............................AAATTAAGAACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGTGCAAGCG------------GATG---------------------------T-------------------------------------.......................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................TTG------CAGCCGCAGAGTTAGTTCAG..........................................................................................................................................................................................................................................................................................2311.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAAGTGCAAGCG------------GAT.........................................................................................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAAGTGCAAGCG------------GAT.........................................................................................................1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCCAAGCGCA........................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------GATG---------------------------T-------------------------------------CGCCGAAGAA---GAACAAGT..................2411.001000001
...........................................................................................................................................................................................................................................TGA----------------------------------------------------------------AAAAACCACAGAGAC..................................................................................................................................................................................................................................................................................................................................1811.001000010
............................................................................................................................................................................................................................................................................................................................CCG---AAACAATTG------CAGCCGCAGAGT..................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................CAGACCCAAC---AAGCCAACTC......................................................................................................................................................................................................................................................................2011.001100000
...........GAGT---CTGATGCCGAGCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
................................................................................................................................CA---ACTAGACAACA----CAAACAACACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCACCTCCCAAGCGCA........................................................................................................................................2011.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGAAGTGCAAGCG------------GATG---------------------------T-------------------------------------.......................................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAAGAA---GAACAAGTGGT...............2111.001100000
................................ATTAAGAACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
......................................AACAAGTCGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGTGCAAGCG------------GATG---------------------------T-------------------------------------CGCC...................................2311.001000010
..........................................AGTCGCAAATTGAGGTAAAACAA---------------------------------------------------------------CA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCCAAGCGCAGGAC....................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................ATTG------CAGCCGCAGAGTTAG...............................................................................................................................................................................................................................................................................................1911.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCTCCCAAGCGCAGG......................................................................................................................................2011.001100000
........................................................................................................................................................CAACACTGTAAATACGAGTACCACCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................AGTCGCAAATTGAGGTAAAACAA---------------------------------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCCCACCTCCCAAGCGCAG.......................................................................................................................................2311.001100000
droGri2
CTGTCG------AGT---CCGAGGCCGAGCAAATTAAGAACAAGTCGCAAATCGAGGTAAAAC------------------AAATAGACACCACCACC------------------------------AC---AAACAACAACA----ACAACAATACTGTAAATACGAGTACCACAACAACAACA---GC------------------TACAGAGAACAAC---AACACCAC------AATC------------------------------ACAACAACTGA---AAAAACAACAACAACCACAACCACTGAGACCG---AGACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAACCACAAT------CCAAAATAACAC------------AATACCTAACACAGCCAATACCACAACCAACACCACAACCAATAC----CAC--------AACCACCGACAATTCC----------------------------------------------------------------------------------------------------------------------------------------GTCCAACTTCCCAACACTACTGTCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................ATACTGTAAATACGAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACCAACACCACAACCA.....................................................................................................................................................................................................2111.00110
...........................................................................................................................................................................ACCACAACAACAACA---GC------------------TACAGAGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110
...............................................................................................................................................................................................................................................................................................................................................................GTTCAGACCCAAACCACAAT------C.....................................................................................................................................................................................................................................................................2111.00110
.......................................................................................................................................................................................ACA---GC------------------TACAGAGAACAAC---AACACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
..................................................................................AATAGACACCACCACC------------------------------AC---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.....................................................................................................................................................................................................................................................................................................AACAACAACCACAACCACTGAGACC.................................................................................................................................................................................................................................................................................................................................2511.00110
....................................AGAACAAGTCGCAAATCGAGGTAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101
........................................................................................................................................................................AGTACCACAACAACAACA---GC------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..............................................................................................................................................................................................................................................................................................................CACAACCACTGAGACCG---AGA..........................................................................................................................................................................................................................................................................................................................2011.00101
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAATAC----CAC--------AACCACCGA.........................................................................................................................................................................2311.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATACCACAACCAACACC............................................................................................................................................................................................................2111.00110
droAna3
-----------G------------------AGGCCGAAAAGGGACAACCAATCGAGGTAAAGA-GC--------TTTAC---AACCGACTGCACTACA-C--------------CCAACCA------------CAACAACAATA----AACACCACACTGTAAATACCAGTACAAGAATAACC------GC------------------CACAGAAATCACTGAGAACATTGCACAAAAAATAACCCGAACC------------GAAACTGAAACTGAAACAGA---GACAG--AGACC-ATTACTAGCACTGGGACAGATGAGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------T-CGAAGACGTGAAAGCG------------GAAG-------------------------------------------------C---------CAGTCAAGCCGAG------GAGGAAGTGGTAGCGGCCATCATTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------GAGGAAGTGGTAGCGGCC........1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------------------------------------C---------CAGTCAAGCCGAG------GAGGAAGT..................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTAGCGGCCATC.....1811.001100000
........................................................................................................................................................................................................................................................................................................................GGGACAGATGAGACCGTTGCAG---CAGCC.........................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................CTAGCACTGGGACAGATGAGACC........................................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------GAGGAAGTGGTAGCGGC.........1911.001100000
..................................CGAAAAGGGACAACCAATCGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAG------GAGGAAGTGGT...............1811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGAAAGCG------------GAAG-------------------------------------------------C---------CA...........................................1911.001000001
.......................................AGGGACAACCAATCGAGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droBip1
C----------G------------------AATCCGAGAAAGGACAACCAATCGAGGTAAAG------------CTCTTAACAAATGACTGCACTACA-C--------------CCAACCA------------CAACAACAATA----AACACAACACTGTAAATACCAGTACAACAATAACC------GC------------------CACAGAAATCACTGAGAACATTGCACAAAGAATAACCCGAACCCGTACCAGAACAGATACCATAACAGGGACTGA---GACAGAG---ACTACAACTAGCACTGAGACAG---AGACTGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCTCACGCAGGC---------------------CG--------------------------------------A-CGATGACGTGAAAGCG------------GAAG---------------------------CCGTT---A------CTG-TCCC---------CAGTCAAGCCGAG------GAGGAAGTTGTAGCGGCCATCATTCGSizeHit CountTotal NormTotal
No Reads
droKik1
T----------G------------------AGGCCGAGAAGGGGCAGCAAATTGAGGTAAAG------------CACACAAGTACAGACAGCACC---------------------------------------------AGCG----AAAACTACACTGTAAATACAACAACAACAACAACC------AC------------------TACCGAAATCACAGAGAACACTGCACACAGAACA------------------------------ATAACAACAGAATTAACAGAAAGAACATGCACAAGCACCAAGACAGAAGCGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCGAAACAACCAACACGATCCTTTCCACCTCCCAAACGCAGGC----------------------A--------------------------------------C-CA--------------------------GAGG---------------------------CCAT----------------------CAGCAGCAGCCAAGCGGAG------GAGGAAGTTGTGGCTGCGATCATCCASizeHit CountTotal NormTotal
No Reads
droFic1
T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCAACAC--------------A-------------CA---CAATAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACTAA------------AGCAACAACCGAATTCACAGAGAACACAGCACTAAAAACA------------------------------ATAAGTACAGA---AACCGAAAGAACTTGCACTAGCACTGTGACCG---AGACCGTTGTAG---AAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCCTTCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGCGAAGTGATTGAAG------------------------------------------CAGTGACCAGCATCACC-AC--C-AGCAGCAGCAGCCAAGCCGAG------GAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACTACA-C--------------ACAACAA------------CAACAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAACACCAACAAACACAAAAACAACAACCGAAATCACAGAAAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---AACCGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAT---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CA---------TTGAAG------------------------------------------CAGTTACCACGACCACT-ACCAC---------TAGCCAAGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------AGAACGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCACA------------------------------CA---CAGCAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAGA---AC------------------AACCGAAATCACAGAAAACACTGCACTAAAAACA------------------------------ATAAATACAGA---AACAGAAAGAACTTGCACAGGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAATGA---------AG------------------------------------------CAGT-------------TACCAC---------CAGCCAAGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droBia1
T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACA-ACACAGCA--AACACAAGAACAGACTGCACCACA-----------------CAACAACAA----CA---ACACTACAGCA----AAAACTCCACTGTAAATACAAGTACAACAACAACAACAGCAACTA---------AAACCACAACTGAAATCACAGAGAACACTGCACTTAAACAA------------------------------ATAAGTACCGA------------------CACAAGCACTGTGACCG---AGACCTTAGTAGCCGCAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAACGAGGTGATTGAAG-CAG-----CAGCAGCGGCAGTAGAAGCAGCGGCAGCCGCAGCAGT-------------GGCCGCCACCAGCAGCAGCCAGGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droTak1
-----------G------------------AGACCGAGAAGGGACAACAAATTGAGGTAAACA-AC-----AAGCACACAAGAACAGACAGCACCACCAC--------------A-------------CAAGAACACAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAAAAAC---------------CACAACCGAAATCACAGAGAACACTGCACTAGAAAAT------------------------ACT---AAAAGTACAGA---AACAGAA---------ACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CAGCA-----------------------------------G-CAGCGAAGTGATTGAAG------------------------------------------CAGCA---G-CA---GTGTCCAC---------CAGCCAAGCGGAG------GAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACA-ACCAA--AACCACACAAGAACAGACAGCACCACA------------------------------CA---ACACAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACAAC------------------AACCGAAATCACAGAAAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---AACAGAAAGAACATGCACAAGCACAGTGACCG---AGACCGTTCTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAACGAAGTGATTGAA------------GAAG---------------------------CAGT-------------GACCAA---------CAGCCAGGCGGAG------GAGGAAGTTGTGGCGGCTATTATCAASizeHit CountTotal NormTotal
No Reads
dm3
------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAACACCACA------------------------------CA---ACACAACAGCA----AAAACATCACTGTAAATACAAGTACAACAACAACAAAA---AC------------------AACCGAAATCACAGAGAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---TACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACAAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCAATCATCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.........................................................................................................................................................................................................................................................................................................................................TGTAG---CAGCCGCAGAGTTAGT..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAAGCGGAA------GAGG......................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------.............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GGTAAACA-AC--------CACACAAGAACAGACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................G---AGACCGTTGTAG---CAGCCGCAGAGT..................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGGGACAGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................................................................................................................................................................ACTGTGACCG---AGACCGTTGTAG---CAGCCGC.......................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TAAGTACAGA---TACAGAAAGAACTTGC................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................CATCACTGTAAATACAAGTACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGAT............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................A----AAAACATCACTGTAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCGGAA------GAGGAAGTTGTGCA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGTGATTGAAA------------------------------------------CA...........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGAAGGGACAGCAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CAGTGAAGTGATTGAAA------------------------------------------.............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------.............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CACAAGCACTGTGACCG---AGACCGT......................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CAGACCCAAA---CAAT------CCTA---------------ACCAAAACAA.........................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AC--------CACACAAGAACAGACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CAAAA---AC------------------AACCGAAATCACAGAGAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AATCACAGAGAACACTGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AGA---TACAGAAAGAACTTGCA...............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGAAGGGACAGCAAATTGAGGTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TTCAGACCCAAA---CAAT------CCTA---------------ACCAAAA............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGTGACCG---AGACCGTTGTAG---C.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGATTGAAA------------------------------------------CAGT-------------GACCA.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................CAAGCACTGTGACCG---AGACCGTTGTAG---C.............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TCACTGTAAATACAAGTACAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCA----AAAACATCACTGTAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GACAACACCACA------------------------------CA---ACACAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCCTTCCCACCTCCCAC...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ATTGAGGTAAACA-AC--------CACACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGAGAACACTGCACTAAAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CA...........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAAGCGGAA------GAGGAAGTTGT...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-------------GACCCC---------CAGCCAAGCGGAA------GAGG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................ATCGAGAAGGGACAGCAAATTGAGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCC.......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCGGAA------GAGGAAGTTG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................CAGCA----AAAACATCACTGTAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGAACAGACAACACCACA------------------------------CA---ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCA----AAAACATCACTGTAAATACAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTAGTTCAGACCCAAA---CAAT------CCTA---------------AC.................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AAAACATCACTGTAAATACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGT....................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GCAGAGTTAGTTCAGACCCAAA---C...............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AAGCACTGTGACCG---AGACCGTTGT...................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------------------G-CAGTGAAGTGATTGAA........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCA----AAAACATCACTGTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
G----------------------GCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCACA------------------------------CA---ACACAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACAAAAA---------------CAACCGAAATCACAGAGAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---TACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACAAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCGATCATCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
G----------------------GCCACGGAGATCGAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000200000
.................................................................................................................................................................................................................................................CA------------------------------ATAAGTACAGA---TACAGAAAGAACT...................................................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
...........................................................................................................................................................................................................................................................................................A---TACAGAAAGAACTTGCACAAGCACT.......................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
..........................ACGGAGATCGAGAAGGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
........................CCACGGAGATCGAGAAGGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGGAA------GAGGAAGTTGTGGCAGCG........2711.00100010000000000000
...............................................................................................................................................................................................................................................AACA------------------------------ATAAGTACAGA---TACAGAAAGAACT...................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.............................................................................ACAAGAACAGACAGCACCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CA...........................................2811.00100000001000000000
.................................................................................................................................................................................................................................................................................ATAAGTACAGA---TACAGAAAGAACTT..................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................ACCG---AGACCGTTGTAG---CAGCC.........................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..........................................................................................................................................................................................................................CACAGAGAACACTGCACTAAAAACA------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAA------GAGGAAGTTGTGGCAG..........2211.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAACACGATCCTTCCCACCTCC..................................................................................................................................................................................................................2211.00100100000000000000
...............................................................................................................................................................................................................................................................................................TACAGAAAGAACTTGCACAAGCACTG......................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
G----------------------GCCACGGAGATCGAGAAGGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
................................ATCGAGAAGGGACAGCAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............................GGAGATCGAGAAGGGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................CACGGAGATCGAGAAGGGACAGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
........................................................................................................................................................................................................................ATCACAGAGAACACTGCACTAAA................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..................................................................................................................................................................................................................ACCGAAATCACAGAGAACACT........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
...............................................................................................................................................................................................................................................................................................TACAGAAAGAACTTGCAC..............................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
.......................................................................................................................................................................................................................................................................................ACAGA---TACAGAAAGAACT...................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAA------GAGGAAGTTGTGGC............2111.00100000000000001000
.............................................................................ACAAGAACAGACAGCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...................................................................................................................................................................................................................................................................................AAGTACAGA---TACAGAAAGAA.....................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
.........................CACGGAGATCGAGAAGGGACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCC---------CAGCCAAGCGGT.................................1620.50100000000001000000
droSec2
G----------------------GCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACAGACAGCACCACA------------------------------CA---ACACAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAACAAAAA---------------CAACCGAAATCACAGAGAACACTGCACTAAAAACA------------------------------ATAAGTACAGA---TACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACAAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCGATCATCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGC....................................2611.0010010
......................................................................................................................................................................................................................................................................................................................CTGTGACCG---AGACCGTTGTA..................................................................................................................................................................................................................................................................................................................2011.0010010
G----------------------GCCACGGAGATCGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
G----------------------GCCACGGAGATCGAGAAGGGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA------GAGGAAGTTGTGGCAGCGAT......2311.0011000
................................ATCGAGAAGGGACAGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCC........................................2611.0010010
.....................................................................................................................................................................................................................................................................................................................................CCGTTGTAG---CAGCCGCAGA....................................................................................................................................................................................................................................................................................................1911.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTG..............................................................................................................................2411.0010010
.........................................................................................................................................AACAGCA----AAAACTTCACTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................ACCG---AGACCGTTGTAG---CAG...........................................................................................................................................................................................................................................................................................................1911.0010010
............................................................................CACAAGAACAGACAGCACCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.................................................................................................................................................................................................................................................................................................................................................CAGCCGCAGAGTTAGTTCAGAC........................................................................................................................................................................................................................................................................................2211.0010010
.....................................................................................................................................................................................................................................................................................................................................CCGTTGTAG---CAGCCGCAGAGTTAGT..............................................................................................................................................................................................................................................................................................2511.0010010
...................................................................................................................................................................................................................................................................................................GAAAGAACTTGCACAAGCA.........................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................AGGGACAGCAAATTGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................ACACAAGAACAGACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................................................................................................................................................................................................CCGAAATCACAGAGAACACT........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CA...........................................................................2611.0010010
.....................................GAAGGGACAGCAAATTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.................................................................................................................................................................................................................................................................................ATAAGTACAGA---TACAGAAA........................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCC---------CAGCCAAGCGGAA------GAGGAAG...................2411.0010010
...................................GAGAAGGGACAGCAAATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.............................................................................................................................................................................................................................................AAAACA------------------------------ATAAGTACAGA---TACAGAAAG.......................................................................................................................................................................................................................................................................................................................................................2611.0010010
droYak3
G----------------------GCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACCGACAGCACTACA------------------------------CA---ACACAACAGCA----AAAACAACACTGTAAATACAAGTACAACAACAACAAAA---AC------------------AACCGAAATCACAGAGAACACTGCACAAAAAACT------------------------------ATAAGTACAGA---AACAGAAAGAACTTGCACAAGCACTGTGACTG---AGACCGTTGTAG---TAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------GACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCAATCATCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................GAGATCGAGAAGGGACAGCAAATTGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29116.0016000000000016
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAA------GAGGAAGTTGTGGC............1911.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAA------GAGGAAGTTGTGG.............1811.00101000000000
.............................................................................................................................................................................................................................................................................................................................TG---AGACCGTTGTAG---TAGCCGCAGAG...................................................................................................................................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................................................CAGAGAACACTGCACAAAAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
........................................................................................................................................................................................................................................................................................................................................................AGAGTTAGTTCAGACCCAAA---CA..............................................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................................................................................................................................................TGTAG---TAGCCGCAGAGTTAGTT.............................................................................................................................................................................................................................................................................................2211.00100010000000
...................................GAGAAGGGACAGCAAATTGAGGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCGGAA------GAGGAAGTTGTGGC............2411.00100000010000
.....................................................................................................................................................................................................................................................................................GTACAGA---AACAGAAAGAACTTGC................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAA------GAGGAAGTTGTGGCA...........2011.00100100000000
droEre2
G----------------------GCCACGGAGATCGAGAAAGGACAGCAAATTGAGGTAAACA-AC--------CACACAAGAACTGACAGCACCACA------------------------------CA---ACACAACAGCA----AAAACCACACTGTAAATACAAGTACAACAACAACAAAA---AC------------------AACTGAAATCACAGAGAACACTGCACTAAAAACT------------------------------ATAAGTACAGA---AACAGAAAGAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAAT------CCTA---------------ACCAAAACAACCAACACGATCCTTCCCACCTCCCACACGCAGGC---------------------CA--------------------------------------G-CAGTGAAGTGATTGAAA------------------------------------------CAGT-------------AACCCC---------CAGCCAAGCGGAA------GAGGAAGTTGTGGCAGCAATCATCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................A---------------ACCAAAACAACCAACACGAT...............................................................................................................................................................................................................................2111.0010000010
................................................................................................................................................................................................................................................................................................................CAAGCACTGTGACCG---AGACC........................................................................................................................................................................................................................................................................................................................2011.0010000100
.......................................................................................................................................................................................................................................................................................................................................GTTGTAG---CAGCCGCAGAGTTAGTTC............................................................................................................................................................................................................................................................................................2511.0010000100
.....................................................................................................................................................................................................................................................................................GTACAGA---AACAGAAAGAACTTGCA...............................................................................................................................................................................................................................................................................................................................................2411.0010000010
.......................GCCACGGAGATCGAGAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
G----------------------GCCACGGAGATCGAGAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................AAAACAACCAACACGATCCTTCCC........................................................................................................................................................................................................................2411.0010001000
......................................................................................................................................................................................................................................................................................................................................................GCAGAGTTAGTTCAGACCCAAA---CA..............................................................................................................................................................................................................................................................................2411.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA------------------------------------------CAGT-------------AACCCC---------CAGCCAAG.....................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGATTGAAA------------------------------------------CAGT-------------AACCCC---------C............................................2211.0010000010
........................................................................................................................................................................................................................ATCACAGAGAACACTGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
........................................................................................................................................................................................................................................................................................................................GTGACCG---AGACCGTTGTAG---C.............................................................................................................................................................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC---------------------CA--------------------------------------G-CAGTGAAGTGATT...........................................................................................................................1911.0010000010
........................................................................................................................................................................................AA---AC------------------AACTGAAATCACAGAGAACACTGC......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.......................................................................................................................................................................................................................................................................................................GAACTTGCACAAGCACTGT.....................................................................................................................................................................................................................................................................................................................................1911.0010000010
..........................................................................................................................................................................................................................................................................................................................GACCG---AGACCGTTGTAG---C.............................................................................................................................................................................................................................................................................................................1811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCGGAA------GAGGAAGTTGTGGCA...........2511.0011000000
.........................................GGACAGCAAATTGAGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1411000000
....................................................................................................................................................................................................................................................................................................AAAGAACTTGCACAAGAC.........................................................................................................................................................................................................................................................................................................................................18100.1010001000

Generated: 05/18/2015 at 12:38 AM