ID:

dps_139

 Coordinate:

Unknown_singleton_870:13428-13518 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.8 -42.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BilboLINELOA-
mature
  1. dps_142  Unknown_singleton_870:229-253 +
  2. dps_139  Unknown_singleton_870:13428-13452 +
star
  1. dps_142  Unknown_singleton_870:285-310 +
  2. dps_139  Unknown_singleton_870:13484-13509 +

Sense Strand Reads

TGTTTATTGCCCAGCTTATGTTACGTTTTTAAGCATGTGATCCATCGAGGTTAGCGGTCCCTCTCCTGGGAGATGTACCGTCTCGATGGTTGTGCACCTTGGGAAATGCGTGCGTCTCGTAGAATGTGCAGGGACTCCTCCCTGGAATTGGTACCGAGGGGTTAGTTTTTGGGAGAATCTTGCGAAGCCTT
***********************************.....((((..((((.....(((((((...(((.(((((((((((((((((.(((.....)))))))))..)).))))))))).))).......)))))))))))..)))).******************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
 M022
male body		 SRR902010
ovaries
 GSM444067
head
 SRR902012
CNS imaginal disc
...........................................................................................................GCGTGCCTTTTGTAGAATG................................................................. 19 3 20 7.30 146 126 0 15 0 0 4 0 0 1
......................................................................................................................................................................TTTTGGGAGAATCTTGCGAAGCCT. 24 0 2 3.50 7 6 0 0 1 0 0 0 0 0
..................................................TTAGCGGTCCCTCTCCTGGGAGATG.................................................................................................................... 25 0 2 3.50 7 4 0 2 0 1 0 0 0 0
......................................................................................................................................................................TTTTGGGAGAATCTTGCGAAGCCTT 25 0 2 2.00 4 3 0 0 1 0 0 0 0 0
........................................TCCATCGAGGTTAGCGGTCCCT................................................................................................................................. 22 0 2 1.50 3 3 0 0 0 0 0 0 0 0
...................................................TAGCGGTCCCTCTCCTGGGAGATG.................................................................................................................... 24 0 2 1.50 3 1 0 0 0 2 0 0 0 0
....................................................................................................................TAGTAGAATGTGCAGGGACTCCTCC.................................................. 25 1 20 1.40 28 0 24 2 1 0 0 1 0 0
........................................TCCATCGAGGTTAGCGGTCCC.................................................................................................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................TCCATCGAGGTTAGCGGTCCCTCTCC............................................................................................................................. 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................TCCATCGAGGATAGCGGTCCCTCTC.............................................................................................................................. 25 1 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................TCCATCGAGGATAGCGGTC.................................................................................................................................... 19 1 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................TCCATCGAGGATAGCGGTCCCTCT............................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................TCCATCGAGGTTAGCGGTCCCTCT............................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................TCCATCGAGGATAGCGGTCCCTCTCCTG........................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................CCATCGAGGTTAGCGGTCCCTCTC.............................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................ATCGAGGTTAGCGGTCCCTCTCCT............................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TGCGTGCGTCTCGTAGAATGTGCAGG........................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TCGTAGAATGTGCAGGGACTCCTCCC................................................. 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
........................................TCCATCGAGGTTAGCGGTCCCTCTCCTG........................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................TCCATCGAGGATAGCGGTCCC.................................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CTTTTGGGAGAATCTTGCGAAGCCT. 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0
...................................................................................................TGGGAAATGCGTGCGTCTCGTAGT.................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................TCCATCGAGGTTAGCGGTCA................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................TGCGTCTCGTAGAATGTGCAGGGACTC...................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................TCCATCGAGGATAGCGGTCCCT................................................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTTGGGAGAATCTTGCGAAGCC.. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................TCCATCGAGGATAGCGGTCA................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................CCATCGAGGATAGCGGTCCCTCTC.............................................................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................GTCTCGATGGTTGTGCACCTTGG......................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................TATGTTACGTTTGTGAGGATGTGA....................................................................................................................................................... 24 3 2 0.50 1 0 0 1 0 0 0 0 0 0
....................................................................................................................TCGTAGAATGTGCAGGGACTCCTCC.................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................ATCGAGGTTAGCGGTCCC.................................................................................................................................. 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TCGTAGAATGTGCAGGG.......................................................... 17 0 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTTTGGGAGAATCTTGCGAACCCT. 24 1 2 0.50 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................TTTTGGGAGAATCTTGCGAAGCC.. 23 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.............................................CGAGGATAGCGGTCCCTCTCCTGGGAAA...................................................................................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGTTGGGAGAATCTTGCGAAGCCTC 25 2 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................TTTTGGGAGAATCTTGCGAAGCCTC 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTTTGGGATAATCTTGCGAAGCCT. 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.................ATGTTACGTTTTTGAGGATGTG........................................................................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TAGTAGAATGTGCAGGGACTCCTCCC................................................. 26 1 19 0.47 9 0 7 2 0 0 0 0 0 0
...........................................................................TACCGTCTCGATGGTTGTGCA............................................................................................... 21 0 11 0.36 4 4 0 0 0 0 0 0 0 0
............................................................................................................AGTGCGTCTGGTTGAATGTGCAGGG.......................................................... 25 3 3 0.33 1 0 0 0 0 1 0 0 0 0
TGTTTATTGCCCAGCTTATGTTACGTT.................................................................................................................................................................... 27 0 16 0.31 5 3 0 0 0 0 0 2 0 0
....TATTGCCCAGCTTATGTTACGTTT................................................................................................................................................................... 24 0 17 0.29 5 4 0 0 0 0 0 1 0 0
....................................................................................................................TGGTAGAATGTGCAGGGACTC...................................................... 21 1 20 0.25 5 0 5 0 0 0 0 0 0 0
....................................................................................................................TGGTAGAATGTGCAGGGACTCC..................................................... 22 1 20 0.25 5 1 2 0 2 0 0 0 0 0
..................................................................................................................................................................TATTTTTTGGGAGAA.............. 15 1 20 0.20 4 0 2 0 0 0 0 2 0 0
...........................................................................TACCGTCTCGATGGTTGTGCAC.............................................................................................. 22 0 11 0.18 2 2 0 0 0 0 0 0 0 0
....................................................................................................................TAGTAGAATGTGCAGGGACTCCTCCCC................................................ 27 2 19 0.16 3 0 3 0 0 0 0 0 0 0
....................................................................................................................TGGTAGAATGTGCAGGGACTCCTC................................................... 24 1 20 0.15 3 0 1 0 2 0 0 0 0 0
....................................................................................................................TGGTAGAATGTGCAGGGACT....................................................... 20 1 20 0.15 3 0 3 0 0 0 0 0 0 0
............................................................................................................................................................................GAGAATCTTGCGAAGCCTT 19 0 14 0.14 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................GAGAATCTTGCGAAGCCT. 18 0 14 0.14 2 2 0 0 0 0 0 0 0 0
.......................................AACCAGCGCGGTTAGCGGT..................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 0 1 0
TGTTTATTGCCCAGCTTATGTTACGT..................................................................................................................................................................... 26 0 16 0.13 2 2 0 0 0 0 0 0 0 0
...........................................................................TTCCGTCTCGATGGTTGTGCAC.............................................................................................. 22 1 16 0.13 2 0 0 0 2 0 0 0 0 0
..............................................................................CGTCTCGATGGTTGTGCAC.............................................................................................. 19 0 17 0.12 2 2 0 0 0 0 0 0 0 0
....TATTGCCCAGCTTATGTTACGTT.................................................................................................................................................................... 23 0 17 0.12 2 2 0 0 0 0 0 0 0 0
....................................................................................................................TAGTAGAATGTGCAGGGACTCCCCC.................................................. 25 2 20 0.10 2 0 2 0 0 0 0 0 0 0
.......................................................................................................................TAGAATGTGCAGGGACTC...................................................... 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0
......................................................................................................................GTAGAATGTGCAGGGACTCC..................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0
........................................................................ATGTACCGTCTCGATGGTTGTG................................................................................................. 22 0 10 0.10 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................TAGAATGTGCAGGGACTCCT.................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.........................................................................TGCACCGTCTCGATAGTTGTGCACC............................................................................................. 25 2 11 0.09 1 0 0 0 1 0 0 0 0 0
...........................................................................TACCGTCTCGATGGTTGTGCACA............................................................................................. 23 1 11 0.09 1 1 0 0 0 0 0 0 0 0
............................................................................ACCGTCTCGATGGTTGTGCA............................................................................................... 20 0 11 0.09 1 1 0 0 0 0 0 0 0 0
............................................................................ACCGTCTCGATGGTTGTGAACC............................................................................................. 22 1 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................TACCGTCTCGATGGTTGTGC................................................................................................ 20 0 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................TACCGTCTCGATGGTTGTGAACCAC........................................................................................... 25 3 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................TACCGTCTCGATGGTTGTGCACC............................................................................................. 23 0 11 0.09 1 1 0 0 0 0 0 0 0 0
.........................................................................TGTACCGTCTCGATGGTTGTGCAC.............................................................................................. 24 0 11 0.09 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTTTGCGAGAATCTTGCGAAGCCT. 24 1 12 0.08 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................TTTTGTGAGAATCTTGCGAAGCCT. 24 1 12 0.08 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTTTTTGAGAATCTTGCGAAGCCTT 25 2 13 0.08 1 1 0 0 0 0 0 0 0 0
.........................................................TCCCTCTCCTGGGAGATGTGCCGTC............................................................................................................. 25 1 13 0.08 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTTTGAGAATCTTGCGAAGCCT. 22 2 13 0.08 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................CGTAGAATGGGCAGGGGCT....................................................... 19 2 16 0.06 1 0 1 0 0 0 0 0 0 0
TGTTTATTGCCCAGCTTATTTTACGTT.................................................................................................................................................................... 27 1 16 0.06 1 0 0 0 0 0 0 1 0 0
..TTTATTGCCCAGCTTATGTTACGTTT................................................................................................................................................................... 26 0 16 0.06 1 1 0 0 0 0 0 0 0 0
..TTTATTGCCCAGCTTATGTTACGTT.................................................................................................................................................................... 25 0 16 0.06 1 1 0 0 0 0 0 0 0 0
.GTTTATTGCCCAGCTTATGTTACGTT.................................................................................................................................................................... 26 0 16 0.06 1 1 0 0 0 0 0 0 0 0
..TTTATTGCCCAGCTTATGTTACG...................................................................................................................................................................... 23 0 16 0.06 1 1 0 0 0 0 0 0 0 0
...TTATTGCCCAGCTTATGTTACGTTT................................................................................................................................................................... 25 0 17 0.06 1 1 0 0 0 0 0 0 0 0
....TATTGCCCAGCTTATGTTACG...................................................................................................................................................................... 21 0 17 0.06 1 1 0 0 0 0 0 0 0 0
....TATTGCCCAGCTTATGTTACGT..................................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0 0 0 0 0 0
...TTATTGCCCAGCTTATGTTAAGTT.................................................................................................................................................................... 24 1 17 0.06 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................TACCGAGGGGTTAGTGTTTCC................... 21 3 17 0.06 1 1 0 0 0 0 0 0 0 0
.......TGCCCAGCTTATGTTACGTTT................................................................................................................................................................... 21 0 17 0.06 1 1 0 0 0 0 0 0 0 0
...............................................................................GTCTCGATGGTTGTGCACC............................................................................................. 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0
TGTTTATTGCCCAGCTTATG........................................................................................................................................................................... 20 0 19 0.05 1 1 0 0 0 0 0 0 0 0
...TTATTGCCCAGCTTCTGTTACGTT.................................................................................................................................................................... 24 1 19 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................................................TAGTAGAATGTGCAGAGACTCCTCCC................................................. 26 2 19 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................................................TAGTAGAATGTGCAGGGACTCCCCCC................................................. 26 2 19 0.05 1 0 1 0 0 0 0 0 0 0
....TATTGCCCAGCTTATGTTA........................................................................................................................................................................ 19 0 19 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CACCGAGGGGTTAGTTTT...................... 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TGGTAGAATGTGCAGGGACTCCC.................................................... 23 2 20 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................................................GTAGAATGTGCAGGGACTCCT.................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................................................TTGTAGAATGTGCAGGGACTC...................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0
...................................................................GTGAGATGAACCGTATCGA......................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
........................................................................................................................AGAATGTGCAGGGACTCCTC................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0
......................................................................................................................GTAGAATGTGCAGGGTCTCC..................................................... 20 1 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................................................................................TAGTAGAATTTGCAGGGACTCCTCC.................................................. 25 2 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................................TTGTAGAATGTGCAGGGACTCC..................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................................................................TGGTAGAATGTGCAGGGACC....................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................................TAGTAGAATGTGCAGGGACTCCCTCCTG............................................... 28 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

ACAAATAACGGGTCGAATACAATGCAAAAATTCGTACACTAGGTAGCTCCAATCGCCAGGGAGAGGACCCTCTACATGGCAGAGCTACCAACACGTGGAACCCTTTACGCACGCAGAGCATCTTACACGTCCCTGAGGAGGGACCTTAACCATGGCTCCCCAATCAAAAACCCTCTTAGAACGCTTCGGAA
********************************************.....((((..((((.....(((((((...(((.(((((((((((((((((.(((.....)))))))))..)).))))))))).))).......)))))))))))..)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 GSM343916
embryo
 M062
head
 V112
male body
ACAAATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 26 0 16 1.50 24 19 4 0 1 0 0 0
...........................................................GGAGAGGACCCTCTACATGGCAGAGCT......................................................................................................... 27 0 6 1.33 8 2 3 3 0 0 0 0
..........................................................GGGAGAGGACCCTCTACATGGCAGAGCT......................................................................................................... 28 0 6 1.17 7 1 5 1 0 0 0 0
...............................................TCCAATCGCCAGGGAGAGGACCCT........................................................................................................................ 24 0 2 1.00 2 2 0 0 0 0 0 0
...........................................................GGAGAGGACCCTCTACATGGCAGAGC.......................................................................................................... 26 0 6 1.00 6 1 3 2 0 0 0 0
..........................................................GGGAGAGGACCCTCTACATGGCAGAGC.......................................................................................................... 27 0 6 1.00 6 0 5 1 0 0 0 0
.CAAATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 25 0 16 0.69 11 9 0 1 1 0 0 0
...........................................................GGAGAGGACCGTCTACATGGCAGAGC.......................................................................................................... 26 1 8 0.63 5 0 3 2 0 0 0 0
...AATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 23 0 17 0.53 9 8 1 0 0 0 0 0
..AAATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 24 0 16 0.50 8 6 2 0 0 0 0 0
.........................................................AGGGAGAGGACCCTCTACATGGCAGAGC.......................................................................................................... 28 0 6 0.50 3 1 2 0 0 0 0 0
.......................................................CCAGGGAAAGGACCCTCTATATGGCAG............................................................................................................. 27 2 4 0.50 2 2 0 0 0 0 0 0
...........................................................................................................................................................CTCCCCAATCAAAAACCCTCTTAG............ 24 0 2 0.50 1 1 0 0 0 0 0 0
........................................................CAGGGAGAGGACCGTCTACATGGCAG............................................................................................................. 26 1 8 0.50 4 0 4 0 0 0 0 0
.....................................................................................................CCTTTACGCACGCAGAGCATCTTAC................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................TCCCCAATCAAAAACCCTCT............... 20 0 2 0.50 1 1 0 0 0 0 0 0
................................................................................................GGAACCCTTTACGCACGCAGAGCAT...................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
....ATAACGGGTCGAATACAATGCAAAAAT................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0
............................................................................................ACGTGGAACCCTTTACGCACGCAGAG......................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
..............................................................GAGGACCCTCTACATGGCAGAGCTAC....................................................................................................... 26 0 7 0.43 3 2 0 1 0 0 0 0
.......................................................................CTACATGGCAGAGCTACCAACACGT............................................................................................... 25 0 10 0.40 4 3 0 0 0 0 1 0
..............................................................GAGGACCGTCTACATGGCAGAGCTACC...................................................................................................... 27 1 9 0.33 3 0 0 3 0 0 0 0
...................................................................CCCTCTACATGGCAGAGCTACCAACACGT............................................................................................... 29 0 6 0.33 2 2 0 0 0 0 0 0
.....................................................................................TACCAACACGTGGAACCCTTTACGCAC............................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................AGAGGACCGTCTACATGGCAGAGC.......................................................................................................... 24 1 9 0.33 3 0 3 0 0 0 0 0
........................................................................TACATGGCAGAGCTACCAACACGT............................................................................................... 24 0 10 0.30 3 1 0 2 0 0 0 0
................................................................GGACCCTCTACATGGCAGAGCTAC....................................................................................................... 24 0 7 0.29 2 2 0 0 0 0 0 0
...............................................................AGGACCCTCTACATGGCAGAGC.......................................................................................................... 22 0 7 0.29 2 1 0 0 1 0 0 0
................................................................GGACCCTCTACATGGCAGAGCTACC...................................................................................................... 25 0 7 0.29 2 1 0 1 0 0 0 0
......................................................................TCTACATGGCAGAGCTACCAACACT................................................................................................ 25 1 11 0.27 3 3 0 0 0 0 0 0
..........................................................GGGAGAGGACCGTCTACATGGCAGAGC.......................................................................................................... 27 1 8 0.25 2 0 2 0 0 0 0 0
.........................................................AGGGAGAGGACCGTCTACATGGCAG............................................................................................................. 25 1 8 0.25 2 0 2 0 0 0 0 0
...........................................................GGAGAGGACCGTCTACATGGCAG............................................................................................................. 23 1 8 0.25 2 0 0 2 0 0 0 0
......................................................GCCAGGGAGAGGACCCTCTAC.................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0
.......................................................................CTATATGGCAGAGCTACCAACACGT............................................................................................... 25 1 10 0.20 2 0 2 0 0 0 0 0
......................................................................TCTACATGGCAGAGCTACCAACACGT............................................................................................... 26 0 10 0.20 2 2 0 0 0 0 0 0
.............................................................................GGCAGAGCTACCAACACGT............................................................................................... 19 0 16 0.19 3 3 0 0 0 0 0 0
ACAAATAACGGGTCGAATACAATGC...................................................................................................................................................................... 25 0 16 0.19 3 3 0 0 0 0 0 0
............................................................................TGGCAGAGCTACCAACACGT............................................................................................... 20 0 11 0.18 2 1 1 0 0 0 0 0
.........................................................AGGGAGAGGACCCTCTACATGGCAGAG........................................................................................................... 27 0 6 0.17 1 1 0 0 0 0 0 0
.........................................................AGGGAGAGGACCCTCTACATGGCAGAGCT......................................................................................................... 29 0 6 0.17 1 0 0 1 0 0 0 0
........................................................CAGGGAGAGGACCCTCTACATGGCAGAGC.......................................................................................................... 29 0 6 0.17 1 0 0 1 0 0 0 0
.........................................................TGGGAGAGGACCCTCTACATGGCAGAGC.......................................................................................................... 28 1 6 0.17 1 0 1 0 0 0 0 0
..........................................................TGGAGAGGACCCTCTACATGGCAGAGC.......................................................................................................... 27 1 6 0.17 1 0 1 0 0 0 0 0
........................................................CAGGGAGAGGACCCTCTACATGGCAGAGCT......................................................................................................... 30 0 6 0.17 1 0 0 1 0 0 0 0
..........................................................GGGAGAGGACCCTCTAAATGGCAGAGC.......................................................................................................... 27 1 6 0.17 1 0 0 1 0 0 0 0
...........................................................GGAGAGGACCCTCTACATGACAGAGCT......................................................................................................... 27 1 6 0.17 1 1 0 0 0 0 0 0
..........................................................GGGAGAGGACCCTCTACATGGCAGAG........................................................................................................... 26 0 6 0.17 1 1 0 0 0 0 0 0
...........................................................GGAGAGGACCCTCTACATGGCAGAGCTA........................................................................................................ 28 0 6 0.17 1 0 1 0 0 0 0 0
.......................................................ACAGGGAGAGGACCCTCTACATGGCAG............................................................................................................. 27 1 6 0.17 1 1 0 0 0 0 0 0
.........................................................TGGGAGAGGACCCTCTACATGGCAGAGCT......................................................................................................... 29 1 6 0.17 1 0 1 0 0 0 0 0
................................................................GGACCCTCTACATGGCAGAGCTA........................................................................................................ 23 0 7 0.14 1 1 0 0 0 0 0 0
............................................................GAAAGGACCCTCTATATGGCAGAGCT......................................................................................................... 26 2 7 0.14 1 1 0 0 0 0 0 0
..............................................................GAGGCCCCTCTACATGGCAGAGCTAT....................................................................................................... 26 2 7 0.14 1 1 0 0 0 0 0 0
..............................................................GAGGACCCTCTACATGGCAGAGCTACC...................................................................................................... 27 0 7 0.14 1 0 0 1 0 0 0 0
..............................................................AAGGACCCTCTATATGGCAGAGCTAC....................................................................................................... 26 2 7 0.14 1 1 0 0 0 0 0 0
...............................................................AGGACCCTCTACATGGCAGAGCT......................................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0 0
....................................................................CCTCTACATGGCAGAGCTACCAACACGT............................................................................................... 28 0 8 0.13 1 1 0 0 0 0 0 0
..................................................................ACCCTCTACATGGCAGAGCTA........................................................................................................ 21 0 8 0.13 1 1 0 0 0 0 0 0
.AAAATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 25 1 16 0.13 2 0 2 0 0 0 0 0
..................................................................ACCCTCTACATGGCAGAGCTATCA..................................................................................................... 24 1 8 0.13 1 1 0 0 0 0 0 0
.........................................................................................................................................................GGCTCCCCAATCAAAAAC.................... 18 0 16 0.13 2 2 0 0 0 0 0 0
.................................................................GACCCTCTACATGGCAGAGCT......................................................................................................... 21 0 8 0.13 1 1 0 0 0 0 0 0
........CGGGTCGAATACAATGCAA.................................................................................................................................................................... 19 0 17 0.12 2 2 0 0 0 0 0 0
......CACGGGTCGAATACAATGCA..................................................................................................................................................................... 20 1 17 0.12 2 2 0 0 0 0 0 0
.....TAACGGGTCGAATACAATGCA..................................................................................................................................................................... 21 0 17 0.12 2 2 0 0 0 0 0 0
....ATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 22 0 17 0.12 2 2 0 0 0 0 0 0
......AACGGGTCGAATACAATGCA..................................................................................................................................................................... 20 0 17 0.12 2 2 0 0 0 0 0 0
.....................................................................CTCTATATGGCAGAGCTACCAACACG................................................................................................ 26 1 9 0.11 1 1 0 0 0 0 0 0
...............................................................AGGACCGTCTACATGGCAGAGCTACC...................................................................................................... 26 1 9 0.11 1 0 1 0 0 0 0 0
...................................................................................................ATCCTGTATGCACGCAGAG......................................................................... 19 3 9 0.11 1 0 0 0 0 1 0 0
....................................................................CCTCTACATGGCAGAGCTACC...................................................................................................... 21 0 10 0.10 1 1 0 0 0 0 0 0
.......................................................................CTATATGGCAGAGCTACCAACACG................................................................................................ 24 1 10 0.10 1 1 0 0 0 0 0 0
......................................................................TCTACATGGCAGAGCTACCAACAC................................................................................................. 24 0 10 0.10 1 1 0 0 0 0 0 0
.......................................................................CTACATGACAGAGCTATCAACACGT............................................................................................... 25 2 10 0.10 1 1 0 0 0 0 0 0
.......................................................................CTACATGGCAGAGCTACCAACAC................................................................................................. 23 0 10 0.10 1 1 0 0 0 0 0 0
....................................................TCGCCAGGGAGAGGACCTTCT...................................................................................................................... 21 1 10 0.10 1 1 0 0 0 0 0 0
.....................................................................GTCTACATGGCAGAGCTACCAACACGT............................................................................................... 27 1 10 0.10 1 1 0 0 0 0 0 0
............................................................................TGGCAGAGCTACCAACACGTG.............................................................................................. 21 0 11 0.09 1 1 0 0 0 0 0 0
........................................................................TACATGGCAGAGCTACCAACACT................................................................................................ 23 1 11 0.09 1 1 0 0 0 0 0 0
......................................................................TCTACATGGCAGAGCTACCAACACTT............................................................................................... 26 1 11 0.09 1 1 0 0 0 0 0 0
...........................................................................ATGGCAGAGCTACCAACACGT............................................................................................... 21 0 11 0.09 1 1 0 0 0 0 0 0
...........................................................GGAGAGGACCCTCTACACGGCAGAGCT......................................................................................................... 27 1 13 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................CTAGGCTCCCCAATCAAAAACTCTCT............... 26 3 14 0.07 1 1 0 0 0 0 0 0
................................................................GGACCCTCTACACGGCAGAGCTAC....................................................................................................... 24 1 14 0.07 1 1 0 0 0 0 0 0
......................................................................................................................................................CATGGCTCCCCAATCAAAAACTCTC................ 25 1 14 0.07 1 1 0 0 0 0 0 0
....................................CACTAGGTTGCTCCAAGCT........................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 1
.......................................................................................................................................................ATGGCTCCCCAATCAAAAAC.................... 20 0 16 0.06 1 0 0 1 0 0 0 0
..AAATAACGGGTCGAATACAATGC...................................................................................................................................................................... 23 0 16 0.06 1 1 0 0 0 0 0 0
........................................................................................................................................................TGGCTCCCCAATCAAAAA..................... 18 0 16 0.06 1 1 0 0 0 0 0 0
.............................................................................GGCAGAGCTACCAACACGTGG............................................................................................. 21 0 16 0.06 1 0 1 0 0 0 0 0
ACAAATAACGGGTCGAATACAATGCT..................................................................................................................................................................... 26 1 16 0.06 1 1 0 0 0 0 0 0
............................................................................AGGCAGAGCTACCAACACGT............................................................................................... 20 1 16 0.06 1 1 0 0 0 0 0 0
..............................CTCGTACACTAGGTAGCTCCA............................................................................................................................................ 21 1 17 0.06 1 1 0 0 0 0 0 0
........CGGGTCGAATACAATGCAAAT.................................................................................................................................................................. 21 1 17 0.06 1 1 0 0 0 0 0 0
..CAATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 24 1 17 0.06 1 1 0 0 0 0 0 0
........CGGGTAGAATACAATGCAAA................................................................................................................................................................... 20 1 17 0.06 1 0 0 0 1 0 0 0
........CGGGTCGAATACAATGCAAAA.................................................................................................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0 0
.ACAATAACGGGTCGAATACAATGCA..................................................................................................................................................................... 25 2 17 0.06 1 1 0 0 0 0 0 0
.................................ATACACTAGGTAGCTCCAAT.......................................................................................................................................... 20 1 17 0.06 1 1 0 0 0 0 0 0
ACAAATAACGGGTCGAATACAAT........................................................................................................................................................................ 23 0 18 0.06 1 1 0 0 0 0 0 0
.................................CTACACTAGGTAGTTCCAATC......................................................................................................................................... 21 2 19 0.05 1 1 0 0 0 0 0 0
AAAAATAACGGGTCGAAT............................................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0
........................................ATGTAGCTCCAATCGCAG..................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_870:13378-13568 + dps_139 TGTTTATTGCCCAGCTTATGTTACG--TTT-TTAAGCATGTGATCCATCGAGGTTAGCGG---------------------TC---CCTCTC-------------CTGG--GAG---ATGTACCGT-CTCGATGGT-----------------------------------------TGTGCACCTTGGGAAATGCGTGCG--TCTCGTAGAATGTGCAGGGACTCCTCCC----------------------------TGGAAT-TGGTACCG--------------------------------AGGGGTTAGTTTTTGGGAGAATCTT--GCGAAGCCTT--
droPer2 scaffold_184:14170-14361 + TGTTTATTGCCCAGCTTATGTTACG--TTTTTTGAGCATGTGATCCATCGAGGTTAGCGG---------------------TC---CCTCTC-------------CTGG--GAG---ATGTACCGT-CTCGATGGT-----------------------------------------TGTGCACCTTGGGAAATGCGTGCG--TCTCGTAGAATGTGCAGGGACTCCTCCC----------------------------TGGAAT-TGGTACCG--------------------------------AGGGGTTAGTTTTTGGGAGAATCTT--GCGAAGCCTA--
droWil2 scf2_1100000003841:1972-1984 + TATTAAGTGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:7635283-7635318 - TGTTTTGGCCCCACCTGATGTTGCT--TTCAAACAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15116:1627750-1627966 + TGTTTACTGCCCATTTTATATTATA--TTTATGTATAAGAGATTTTA-----------------AA-------GATGTAA-TC---TCTTTA-------------CAGG--TAGTTTGTGTG-CTC-CTCGAGG-------------------------------------------ACTGCAGCCTGGGAAAGG--CGTT--TTAAGGAGGATGTCCAGTGACTCTTCAC----------------------------TGGAGA-CTGACC-ATGAGTTGTCATCTTTTTTCAGATAACCTAGTGTGGGGGTGATTTTTGATAAAACTTT--TCTAAGCCTT--
droAna3 scaffold_9494:6190-6379 + TGTCTATTGCCCATTTAAGGTTTCT--GTCACTAAGTAGGTAGTTGAGCGAGCCCTGGTA---------------------AC---C----CTGGCTAT-G----------------------CAT-CACCG-----------------------------GGGTTGTTCCTTCCGATGAGCAACCCGGGAAGTG--TGCG--TTGATAAGGGTCTCCAGGGTTTCCAGGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------CCC-CAAGTAGAGAGAATCTT--TCTTAGGCGG--
droBip1 scf7180000392356:35738-35942 + TGTTTATCGCCCAGCTGAAATATCT--ATCACTCAATAGGTATTTGAGTTGGTTTGGGAGGTAGGG----------ACTATCC---CCCTGT---CTCT-G----------------------CGT-TTCCA-----------------------------GGGTTGATTCTTCTG-ATAGCATCCCGGGAAATG--TGCC--TCTGTGAGAGCCTCCAGGGTTTCTTTGC----------------------------TGGACGTTGCTACAT--------------------------------TTGGTGCACTTGTTGCGAGGACCTT--CTGGAGTCGG--
droKik1 scf7180000301673:11154-11349 + AGTCTATAGCCCGGTGTATTCTACT--AGAGGATATTGGATCTT-------------------------------------------------------------TTGG--GAG---ATGCTTTTC-TCCAGTTGCTAGGTCCTTGTGCTTATTCGCATCGGG-------TACCTC-AGTGCATCCTGGGAAATG--CGTA--TGCATTAGTGCTGTTAGGGCCTCTTCGC----------------------------TGTACT-CTGTAT-GG---------------------------------TTGGC-TGTTTCTATAGCAGCTT--CCGGAGTCTA--
droFic1 scf7180000451444:5939-6142 - CAATTGTTGCCCATTTAAGTCTCTC--CGGAGAGACTAGAGACTTGG-----------------CGTCACGGAGTGGACATTT---CTTCCA-------------TTGG--GG-TGGACGTATCTTCCGCCAGGGG-----------------------------------------TGAGCTCCTGGGGAAGTG--AGTTGATC------------------CCTGTCATCGGAAGTGTAGGTGTTATTACATTTCTTCAGGGC-T-----------------------------------------AGGTTACTTTCTGGTGCAACTTTGGCCATAGCCTTGT
droEle1 scf7180000489457:3618-3831 + TGTTTATGGCCCATTCTATGTTACG--CTCAGACAGAAGCGTTTCCA-----------------GG----------TCGATGC---TTGAACCAGTTCGATTTTTTTGG----------------------------------------------------AAGTCGTTCTACCGG-GAGACTACCCGGAAAGTG--GGAG--TCTAGAAGTAGGCTTAGGGTCTCCTCAT----------------------------G---------ACC-GTGAGCCATCTAGTTTTTTAAGGTATCCCAAGGAAGGGGTTGTTTTGGAGAGGATCTT--CCTAAGCCGA--
droRho1 scf7180000778541:821-1029 + TATGAATGGACCAGTTTATATTACG--GTCTGATAGTAGGAGATTTA-----------------AG----------TTTATTC---CTTCTCCAGTGTG-TCTTCCTGG----------------------------------------------------GGGATGTCCTGTTTG-CAGGCTCCCTGGGAAGTA--AGCG--TCTAGGAGTAGGTTTAGGGATTCTTCAC----------------------------TAGAT--------------CCGTCAGCCTATTGGAGATAGCCCAGGGATACGTCTGTCTTAGAAAGTATTTT--TCTGAGCCTT--
droBia1 scf7180000301513:15698-15901 - TTT--ATGTACCATTTAATATTGCG--GTCTGAAAATAAAAAATCAA-----------------GT----------TTAATTC---CTTCTCCGGCATT-TCTTTCTGG----------------------------------------------------AGGATAACCTGTTTG-TTAGATCCCTGGATAGTG--AGCG--TCTAGAAGTAGGTCCAAGGACTCTTTAC----------------------------TAGAGT-CTGACC-ATGATCCATTAGCTTTCTGAAAATAGCCCAG---------------AGAGAGTACTTT--TGTAAGTCTT--
droTak1 scf7180000415759:48785-48961 + TTTGAATGGACCAGTTTATATTACG--GTCTGATAGTAGGAGACTTA-----------------AG----------TTTATTC---CTTCTCCAGTGTG-TCTTTCTGG----------------------------------------------------GGGATGTCCTGTTTG-CAGGCTCCCTGGGAAGTG--AGCG--TCTAGAAGTAGGTTTAGGGATTCTTCAC----------------------------TAGAGT-CC-----GAGA----------------------------------------GTAGAAAGTATTTT--TCTGAGCCTA--
dm3 chr2R:681995-682014 + TACCAATTGCCCATATTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:21900228-21900260 + TACCAATTGCCCATCTTAAACTCTCCGTTT-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8221:389-421 - TACCAATTGCCCATCTTAAACTCTCCGTTT-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_700:44143-44318 + TGTGTATCGCCCAATTTGGGACCTTTGGGT-CT----------------------------------------------ATGCACACTTCTATGGCGTT-TGTTTGTTGGGAAG---TGATAGCGT----------------------------------------------TTTG-GCTGTTTCCTGGGAAGTG--AGTG--TCTAGAAGTATCTCCAGAGATTCCTCAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCATCTTTGGAGAGTATTTT--TCTAAGTCTG--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGTTTATTGCCCAGCTTATGTTACG--TTT-TTAAGCATGTGATCCATCGAGGTTAGCGG---------------------TC---CCTCTC-------------CTGG--GAG---ATGTACCGT-CTCGATGGT-----------------------------------------TGTGCACCTTGGGAAATGCGTGCG--TCTCGTAGAATGTGCAGGGACTCCTCCC----------------------------TGGAAT-TGGTACCG--------------------------------AGGGGTTAGTTTTTGGGAGAATCTT--GCGAAGCCTT--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................TTTTGGGAGAATCTT--GCGAAGCCT...2423.5070610000000
.....................................................TTAGCGG---------------------TC---CCTCTC-------------CTGG--GAG---ATG.................................................................................................................................................................................................................................2523.5070400102000
............................................................................................................................................................................................................................................................................................................................TTTTGGGAGAATCTT--GCGAAGCCTT--2522.0040310000000
...........................................TCCATCGAGGTTAGCGG---------------------TC---CCT................................................................................................................................................................................................................................................................2221.5030300000000
......................................................TAGCGG---------------------TC---CCTCTC-------------CTGG--GAG---ATG.................................................................................................................................................................................................................................2421.5030100200000
...........................................TCCATCGAGGTTAGCGG---------------------TC---CC.................................................................................................................................................................................................................................................................2121.0020200000000
...........................................TCCATCGAGGTTAGCGG---------------------TC---CCTCTC-------------C...............................................................................................................................................................................................................................................2621.0020200000000
...........................................TCCATCGAGGTTAGCGG---------------------TC---CCTCT..............................................................................................................................................................................................................................................................2420.5010100000000
............................................CCATCGAGGTTAGCGG---------------------TC---CCTCTC-------------................................................................................................................................................................................................................................................2420.5010100000000
..............................................ATCGAGGTTAGCGG---------------------TC---CCTCTC-------------CT..............................................................................................................................................................................................................................................2420.5010100000000
.................................................................................................................................................................................................TGCGTGCG--TCTCGTAGAATGTGCAGG............................................................................................................................2620.5010100000000
.............................................................................................................................................................................................................TCGTAGAATGTGCAGGGACTCCTCCC----------------------------......................................................................................2620.5010000001000
...........................................TCCATCGAGGTTAGCGG---------------------TC---CCTCTC-------------CTG.............................................................................................................................................................................................................................................2820.5010100000000
..........................................................................................................................................................................................TGGGAAATGCGTGCG--TCTCGTAGT.....................................................................................................................................2420.5010000000010
...........................................TCCATCGAGGTTAGCGG---------------------TC---A..................................................................................................................................................................................................................................................................2020.5010100000000
.....................................................................................................................................................................................................TGCG--TCTCGTAGAATGTGCAGGGACTC.......................................................................................................................2720.5010000000010
.............................................................................................................................................................................................................................................................................................................................TTTGGGAGAATCTT--GCGAAGCC....2220.5010100000000
............................................................................................................................GT-CTCGATGGT-----------------------------------------TGTGCACCTTGG............................................................................................................................................................2320.5010100000000
.............................................................................................................................................................................................................TCGTAGAATGTGCAGGGACTCCTCC...................................................................................................................2520.5010100000000
..............................................ATCGAGGTTAGCGG---------------------TC---CC.................................................................................................................................................................................................................................................................1820.5010100000000
.............................................................................................................................................................................................................TCGTAGAATGTGCAGGG...........................................................................................................................1720.5010000000010
............................................................................................................................................................................................................................................................................................................................TTTTGGGAGAATCTT--GCGAAGCC....2320.5010010000000
............................................................................................................................................................................................................................................................................................................................TTTTGGGAGAATCTT--GCGAAGCCTC--2520.5010100000000
........................................................................................................................TACCGT-CTCGATGGT-----------------------------------------TGTGCA..................................................................................................................................................................21110.3640400000000
TGTTTATTGCCCAGCTTATGTTACG--TT............................................................................................................................................................................................................................................................................................................................27160.3150300000200
....TATTGCCCAGCTTATGTTACG--TTT-..........................................................................................................................................................................................................................................................................................................................24170.2950400000100
........................................................................................................................TACCGT-CTCGATGGT-----------------------------------------TGTGCAC.................................................................................................................................................................22110.1820200000000
..................................................................................................................................................................................................................................................................................................................................GAGAATCTT--GCGAAGCCTT--19140.1420200000000
..................................................................................................................................................................................................................................................................................................................................GAGAATCTT--GCGAAGCCT...18140.1420200000000
TGTTTATTGCCCAGCTTATGTTACG--T.............................................................................................................................................................................................................................................................................................................................26160.1320200000000
...........................................................................................................................CGT-CTCGATGGT-----------------------------------------TGTGCAC.................................................................................................................................................................19170.1220200000000
....TATTGCCCAGCTTATGTTACG--TT............................................................................................................................................................................................................................................................................................................................23170.1220200000000
................................................................................................................................................................................................................TAGAATGTGCAGGGACTC.......................................................................................................................18200.1020000000020
...............................................................................................................................................................................................................GTAGAATGTGCAGGGACTCC......................................................................................................................20200.1020200000000
.....................................................................................................................ATGTACCGT-CTCGATGGT-----------------------------------------TGTG....................................................................................................................................................................22100.1010100000000
................................................................................................................................................................................................................TAGAATGTGCAGGGACTCCT.....................................................................................................................20200.1020200000000
........................................................................................................................TACCGT-CTCGATGGT-----------------------------------------TGTGCACA................................................................................................................................................................23110.0910100000000
.........................................................................................................................ACCGT-CTCGATGGT-----------------------------------------TGTGCA..................................................................................................................................................................20110.0910100000000
........................................................................................................................TACCGT-CTCGATGGT-----------------------------------------TGTGC...................................................................................................................................................................20110.0910100000000
........................................................................................................................TACCGT-CTCGATGGT-----------------------------------------TGTGCACC................................................................................................................................................................23110.0910100000000
......................................................................................................................TGTACCGT-CTCGATGGT-----------------------------------------TGTGCAC.................................................................................................................................................................24110.0910100000000
..TTTATTGCCCAGCTTATGTTACG--TTT-..........................................................................................................................................................................................................................................................................................................................26160.0610100000000
..TTTATTGCCCAGCTTATGTTACG--TT............................................................................................................................................................................................................................................................................................................................25160.0610100000000
.GTTTATTGCCCAGCTTATGTTACG--TT............................................................................................................................................................................................................................................................................................................................26160.0610100000000
..TTTATTGCCCAGCTTATGTTACG--..............................................................................................................................................................................................................................................................................................................................23160.0610100000000
...TTATTGCCCAGCTTATGTTACG--TTT-..........................................................................................................................................................................................................................................................................................................................25170.0610100000000
....TATTGCCCAGCTTATGTTACG--..............................................................................................................................................................................................................................................................................................................................21170.0610100000000
....TATTGCCCAGCTTATGTTACG--T.............................................................................................................................................................................................................................................................................................................................22170.0610100000000
.......TGCCCAGCTTATGTTACG--TTT-..........................................................................................................................................................................................................................................................................................................................21170.0610100000000
............................................................................................................................GT-CTCGATGGT-----------------------------------------TGTGCACC................................................................................................................................................................19170.0610100000000
TGTTTATTGCCCAGCTTATG.....................................................................................................................................................................................................................................................................................................................................20190.0510100000000
....TATTGCCCAGCTTATGTTA..................................................................................................................................................................................................................................................................................................................................19190.0510100000000
...............................................................................................................................................................................................................GTAGAATGTGCAGGGACTCCT.....................................................................................................................21200.0510000000100
.................................................................................................................................................................................................................AGAATGTGCAGGGACTCCTC....................................................................................................................20200.0510000001000
droPer2
TGTTTATTGCCCAGCTTATGTTACG--TTTTTTGAGCATGTGATCCATCGAGGTTAGCGG---------------------TC---CCTCTC-------------CTGG--GAG---ATGTACCGT-CTCGATGGT-----------------------------------------TGTGCACCTTGGGAAATGCGTGCG--TCTCGTAGAATGTGCAGGGACTCCTCCC----------------------------TGGAAT-TGGTACCG--------------------------------AGGGGTTAGTTTTTGGGAGAATCTT--GCGAAGCCTA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................TTGGGAAATGCGTGCG--TCTCGTAGA.....................................................................................................................................2511.001000001
........................................TGATCCATCGAGGTTAGCGG---------------------TC---CC.................................................................................................................................................................................................................................................................2420.501010000
........................................................................................TCTC-------------CTGG--GAG---ATGTACCGT-CTCGATG...................................................................................................................................................................................................................27140.071100000
.................................................................................TC---CCTCTC-------------CTGG--GAG---ATGTACCGT-C.........................................................................................................................................................................................................................25190.051010000
....TATTGCCCAGCTTATGTTAC.................................................................................................................................................................................................................................................................................................................................20200.051010000
................................................................................................................................................................................................................TAGAATGTGCAGGGACTCC......................................................................................................................19200.051000001
droWil2
TATTAAGTGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TGTTTTGGCCCCACCTGATGTTGCT--TTCAAACAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TGTTTACTGCCCATTTTATATTATA--TTTATGTATAAGAGATTTTA-----------------AA-------GATGTAA-TC---TCTTTA-------------CAGG--TAGTTTGTGTG-CTC-CTCGAGG-------------------------------------------ACTGCAGCCTGGGAAAGG--CGTT--TTAAGGAGGATGTCCAGTGACTCTTCAC----------------------------TGGAGA-CTGACC-ATGAGTTGTCATCTTTTTTCAGATAACCTAGTGTGGGGGTGATTTTTGATAAAACTTT--TCTAAGCCTT--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TGTCTATTGCCCATTTAAGGTTTCT--GTCACTAAGTAGGTAGTTGAGCGAGCCCTGGTA---------------------AC---C----CTGGCTAT-G----------------------CAT-CACCG-----------------------------GGGTTGTTCCTTCCGATGAGCAACCCGGGAAGTG--TGCG--TTGATAAGGGTCTCCAGGGTTTCCAGGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------CCC-CAAGTAGAGAGAATCTT--TCTTAGGCGG--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................TCCAGGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------CCC-C..............................27201.05210210000
..............................................................................................................................................................................................................................................................................................................................TAGAGAGAATCTT--TCTTAGGCGG--23200.85170017000
......................TCT--GTCACTAAGTAGGTAGTTGAGCG.......................................................................................................................................................................................................................................................................................................26200.65131030000
..........................................................................................................................................................................CTTCCGATGAGCAACCCGGGAAGTG--....................................................................................................................................................25200.357700000
...............................................................................................................................................................................................................................TTCCAGGC----------------------------TTGAGG-TTGTCC-AGC.....................................................................23200.357070000
.......................................................................................................................................................................TTCCTTCCGATGAGCAACCCGGGA..........................................................................................................................................................24200.255500000
.....................................................................................................................................................................TGTTCCTTCCGATGAGCAACCCGG............................................................................................................................................................24200.255050000
...................GTTTCT--GTCACTAAGTAGGTAGTTGA..........................................................................................................................................................................................................................................................................................................26200.204004000
.................................................................................................................................................................................................TG--TGCG--TTGATAAGGGTCTCCAGGG...........................................................................................................................25200.204021010
..............................................................................................................................................................................................................................................................................................................................TAGAGAGAATCTT--TCTTAGGCG...22200.204400000
......................TCT--GTCACTAAGTAGGTAGTTGA..........................................................................................................................................................................................................................................................................................................23200.153300000
................................................................................................................................................................................................................................TCCAGGC----------------------------TTGAGG-TTGTCC-AGC.....................................................................22200.153300000
...........................................................................................................................................................................TTCCGATGAGCAACCCGGGAAGTG--T...................................................................................................................................................25200.153300000
.....................................................................................................................................................................TGTTCCTTCCGATGAGCAACCCGGGAA.........................................................................................................................................................27200.153030000
.....................................................................................................................................................................................................TGCG--TTGATAAGGGTCTCCAGG............................................................................................................................22200.153300000
.............................................................................................................................................................................................................................................................................................................................GTAGAGAGAATCTT--TCTTAGGCGG--24200.153300000
................................TAAGTAGGTAGTTGAGCGAGCCCT.................................................................................................................................................................................................................................................................................................24200.153030000
...............................................................................................................................................................................................................................TTCCAGGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------CC.................................26200.102200000
...............................................................................................................................................................................................................TAAGGGTCTCCAGGGTTTCCAGG...................................................................................................................23200.102200000
.........................................................................................................................................................................CCTTCCGATGAGCAACCCGGG...........................................................................................................................................................21200.102000020
.....................................................................................................................................................................TGTTCCTTCCGATGAGCAACCCGGGAAG........................................................................................................................................................28200.102200000
...........................................................................................................................................................................................................TTGATAAGGGTCTCCAGGGTTTCCAGGC----------------------------......................................................................................28200.102200000
.......................................................................................................................................................................................................................TCCAGGGTTTCCAGGC----------------------------TTGAGG-...............................................................................22200.102101000
................................TAAGTAGGTAGTTGAGCGAGCCCTG................................................................................................................................................................................................................................................................................................25200.102002000
..................................................................................................................................................................................................G--TGCG--TTGATAAGGGTCTCCAGG............................................................................................................................23200.102200000
.......................................................................................................................................................................................................................TCCAGGGTTTCCAGGC----------------------------TTGAGG-TT.............................................................................24200.102020000
.............................CACTAAGTAGGTAGTTGAGCGAGCCCT.................................................................................................................................................................................................................................................................................................27200.102200000
..........................................................................................................................................................................................................................AGGGTTTCCAGGC----------------------------TTGAGG-TTG............................................................................22200.051100000
.......................................................................................................................................................................TTCCTTCCGATGAGCAACCCGGG...........................................................................................................................................................23200.051001000
..............................................................................................................................................................................................................................TTTCCAGGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------C..................................26200.051100000
...................GTTTCT--GTCACTAAGTAGGTAGTTGAGC........................................................................................................................................................................................................................................................................................................28200.051010000
.......................................................................................................................................................................TTCCTTCCGATGAGCAACCCGGGAAG........................................................................................................................................................26200.051010000
.......................CT--GTCACTAAGTAGGTAGTTGAGCGAGCC...................................................................................................................................................................................................................................................................................................29200.051010000
...........................GTCACTAAGTAGGTAGTTGAGCGAGCC...................................................................................................................................................................................................................................................................................................27200.051010000
........................................................................................................................................................................TCCTTCCGATGAGCAACCCGGGAAGT.......................................................................................................................................................26200.051100000
...........................................................................................................................................................................TTCCGATGAGCAACCCGGGAAGTG--TGCG--T.............................................................................................................................................29200.051010000
.............................................................................................................................................................................CCGATGAGCAACCCGGGAA.........................................................................................................................................................19200.051100000
........................T--GTCACTAAGTAGGTAGTTGAGCGAGCC...................................................................................................................................................................................................................................................................................................28200.051010000
....................TTTCT--GTCACTAAGTAGGTAGTTGA..........................................................................................................................................................................................................................................................................................................25200.051010000
.......................................................................................................................................................................................................................TCCAGGGTTTCCAGGC----------------------------TTGAGG-TTGTC..........................................................................27200.051010000
....................................................................................................................................................................TTGTTCCTTCCGATGAGCAACCCGGG...........................................................................................................................................................26200.051010000
........................................................................................................................................................................................................................CCAGGGTTTCCAGGC----------------------------TTGAGG-TTG............................................................................24200.051100000
.............................CACTAAGTAGGTAGTTGAGCGAGC....................................................................................................................................................................................................................................................................................................24200.051010000
................................TAAGTAGGTAGTTGAGCGAGCCCTGGC..............................................................................................................................................................................................................................................................................................27200.051010000
..........................................................................................................................................................................CTTCCGATGAGCAACCCGGGA..........................................................................................................................................................21200.051010000
.........................................................................................................................................................................CCTTCCGATGAGCAACCCGGGA..........................................................................................................................................................22200.051010000
..................................................................................................................................................................................GAGCAACCCGGGAAGTG--TGCG--TTGATA........................................................................................................................................27200.051100000
.....................................................................................................................................................................TGTTCCTTCCGATGAGCAACCCGGGA..........................................................................................................................................................26200.051010000
.......................CT--GTCACTAAGTAGGTAGTTGAG.........................................................................................................................................................................................................................................................................................................23200.051100000
.......................CT--GTCACTAAGTAGGTAGTTGAGCGAG.....................................................................................................................................................................................................................................................................................................27200.051100000
......................................................................................................................................................................GTTCCTTCCGATGAGCAACCCGGGAAG........................................................................................................................................................27200.051100000
..........................................................................................................................................................................CTTCCGATGAGCAACCCGGGAAGTG--TGC.................................................................................................................................................28200.051010000
.................................................................................................................................................................................................................................................................................................................................AGAGAATCTT--TCTTAGGCGG--20200.051010000
..............................................................................................................................................................................................................................TTTCCAGGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------...................................25200.051100000
.................................................................................................................................................................................................TG--TGCG--TTGATAAGGGTCTCCAG.............................................................................................................................23200.051000001
.................................................................................................................................................................................TGAGCAACCCGGGAAGTG--TGC.................................................................................................................................................21200.051100000
....................................TAGGTAGTTGAGCGAGCCCTG................................................................................................................................................................................................................................................................................................21200.051100000
............................TCACTAAGTAGGTAGTTGAGCGAGC....................................................................................................................................................................................................................................................................................................25200.051010000
...........................................................................................................................................................................TTCCGATGAGCAACCCGGGAA.........................................................................................................................................................21200.051010000
................................TAAGTAGGTAGTTGAGCGAGCCCTGGT..............................................................................................................................................................................................................................................................................................27200.051010000
..............................................................................................................................................................................................................................TTTCCAGGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------CC.................................27200.051100000
............................................................................................................................................................................TCCGATGAGCAACCCGGGAAGTG--TGCG--C.............................................................................................................................................28200.051010000
....................................................................................................................................................................................................................................GGC----------------------------TTGAGG-TTGTCC-AGCA---------------------------------CCC-...............................22200.051010000
..........................................................................................................................................................................CTTCCGATGAGCAACCCGGGAAGTG--T...................................................................................................................................................26200.051010000
......................................................................................................................................................................GTTCCTTCCGATGAGCAACCC..............................................................................................................................................................21200.051000010
..........................................................................................................................................................................CTTCCGATGAGCAACCCGGGAAG........................................................................................................................................................23200.051100000
...................GTTTCT--GTCACTAAGTAGGTAGTTGAG.........................................................................................................................................................................................................................................................................................................27200.051010000
..............................................................................................................................................................................................AAGTG--TGCG--TTGATAAGGGTCTCCA..............................................................................................................................25200.051100000
...........................................................................................................................................................................TTCCGATGAGCAACCCGGGAAGTG--TGCG--..............................................................................................................................................28200.051100000
................................................................................................................................................................................ATGAGCAACCCGGGAAGTG--TGCG--T.............................................................................................................................................24200.051001000
droBip1
TGTTTATCGCCCAGCTGAAATATCT--ATCACTCAATAGGTATTTGAGTTGGTTTGGGAGGTAGGG----------ACTATCC---CCCTGT---CTCT-G----------------------CGT-TTCCA-----------------------------GGGTTGATTCTTCTG-ATAGCATCCCGGGAAATG--TGCC--TCTGTGAGAGCCTCCAGGGTTTCTTTGC----------------------------TGGACGTTGCTACAT--------------------------------TTGGTGCACTTGTTGCGAGGACCTT--CTGGAGTCGG--SizeHit CountTotal NormTotal
No Reads
droKik1
AGTCTATAGCCCGGTGTATTCTACT--AGAGGATATTGGATCTT-------------------------------------------------------------TTGG--GAG---ATGCTTTTC-TCCAGTTGCTAGGTCCTTGTGCTTATTCGCATCGGG-------TACCTC-AGTGCATCCTGGGAAATG--CGTA--TGCATTAGTGCTGTTAGGGCCTCTTCGC----------------------------TGTACT-CTGTAT-GG---------------------------------TTGGC-TGTTTCTATAGCAGCTT--CCGGAGTCTA--SizeHit CountTotal NormTotal
No Reads
droFic1
CAATTGTTGCCCATTTAAGTCTCTC--CGGAGAGACTAGAGACTTGG-----------------CGTCACGGAGTGGACATTT---CTTCCA-------------TTGG--GG-TGGACGTATCTTCCGCCAGGGG-----------------------------------------TGAGCTCCTGGGGAAGTG--AGTTGATC------------------CCTGTCATCGGAAGTGTAGGTGTTATTACATTTCTTCAGGGC-T-----------------------------------------AGGTTACTTTCTGGTGCAACTTTGGCCATAGCCTTGTSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTATGGCCCATTCTATGTTACG--CTCAGACAGAAGCGTTTCCA-----------------GG----------TCGATGC---TTGAACCAGTTCGATTTTTTTGG----------------------------------------------------AAGTCGTTCTACCGG-GAGACTACCCGGAAAGTG--GGAG--TCTAGAAGTAGGCTTAGGGTCTCCTCAT----------------------------G---------ACC-GTGAGCCATCTAGTTTTTTAAGGTATCCCAAGGAAGGGGTTGTTTTGGAGAGGATCTT--CCTAAGCCGA--SizeHit CountTotal NormTotal
No Reads
droRho1
TATGAATGGACCAGTTTATATTACG--GTCTGATAGTAGGAGATTTA-----------------AG----------TTTATTC---CTTCTCCAGTGTG-TCTTCCTGG----------------------------------------------------GGGATGTCCTGTTTG-CAGGCTCCCTGGGAAGTA--AGCG--TCTAGGAGTAGGTTTAGGGATTCTTCAC----------------------------TAGAT--------------CCGTCAGCCTATTGGAGATAGCCCAGGGATACGTCTGTCTTAGAAAGTATTTT--TCTGAGCCTT--SizeHit CountTotal NormTotal
No Reads
droBia1
TTT--ATGTACCATTTAATATTGCG--GTCTGAAAATAAAAAATCAA-----------------GT----------TTAATTC---CTTCTCCGGCATT-TCTTTCTGG----------------------------------------------------AGGATAACCTGTTTG-TTAGATCCCTGGATAGTG--AGCG--TCTAGAAGTAGGTCCAAGGACTCTTTAC----------------------------TAGAGT-CTGACC-ATGATCCATTAGCTTTCTGAAAATAGCCCAG---------------AGAGAGTACTTT--TGTAAGTCTT--SizeHit CountTotal NormTotal
No Reads
droTak1
TTTGAATGGACCAGTTTATATTACG--GTCTGATAGTAGGAGACTTA-----------------AG----------TTTATTC---CTTCTCCAGTGTG-TCTTTCTGG----------------------------------------------------GGGATGTCCTGTTTG-CAGGCTCCCTGGGAAGTG--AGCG--TCTAGAAGTAGGTTTAGGGATTCTTCAC----------------------------TAGAGT-CC-----GAGA----------------------------------------GTAGAAAGTATTTT--TCTGAGCCTA--SizeHit CountTotal NormTotal
No Reads
dm3
TACCAATTGCCCATATTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
TACCAATTGCCCATCTTAAACTCTCCGTTT-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
TACCAATTGCCCATCTTAAACTCTC................................................................................................................................................................................................................................................................................................................................25117.001700010080800000000
TACCAATTGCCCATCTTAAACTCTCC...............................................................................................................................................................................................................................................................................................................................2614.00400000010300000000
TACCAATTGCCCATCTTAAACTCTCCGTT............................................................................................................................................................................................................................................................................................................................2914.00400000030100000000
TACCAATTGCCCATCTTAAACTCT.................................................................................................................................................................................................................................................................................................................................2413.00300000020100000000
TACCAATTGCCCATCTTAAACTCTCCGT.............................................................................................................................................................................................................................................................................................................................2813.00300000010200000000
TACCAATTGCCCATCTTAAACTC..................................................................................................................................................................................................................................................................................................................................2312.00200002000000000000
TACCAATTGCCCATCTTA.......................................................................................................................................................................................................................................................................................................................................18201.8537000037000000000000
.ACCAATTGCCCATCTTAAACTCTC................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..CCAATTGCCCATCTTAAACTCTCCGTT............................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
droSec2
TACCAATTGCCCATCTTAAACTCTCCGTTT-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.ACCAATTGCCCATCTTAAACTCTCCGT.............................................................................................................................................................................................................................................................................................................................2740.2511000
droYak3
TGTGTATCGCCCAATTTGGGACCTTTGGGT-CT----------------------------------------------ATGCACACTTCTATGGCGTT-TGTTTGTTGGGAAG---TGATAGCGT----------------------------------------------TTTG-GCTGTTTCCTGGGAAGTG--AGTG--TCTAGAAGTATCTCCAGAGATTCCTCAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCATCTTTGGAGAGTATTTT--TCTAAGTCTG--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................TAGAAGTATCTCCAGAGATTCCTCAC----------------------------......................................................................................26203.75750532200000000
................................................................................................................................................................................................................................TCCTCAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCATC.............................29201.0521000000000021
.......................................................................................................................................................................................................TG--TCTAGAAGTATCTCCAGAGATTCC......................................................................................................................26200.8517017000000000
.............................................................................................................................................................................................................TAGAAGTATCTCCAGAGATTCCTCAC----------------------------TC....................................................................................28200.651307600000000
.................................................................................................................................................................................................TG--AGTG--TCTAGAAGTATCTCCAGAGAT.........................................................................................................................27200.35703000010003
.............................................................................................................................................................................................................TAGAAGTATCTCCAGAGATTCCTCAC----------------------------C.....................................................................................27200.35700700000000
..............................................................................................................................................................................................................AGAAGTATCTCCAGAGATTCCTCA...................................................................................................................24200.30606000000000
..............................................................................................................................................................................................................AGAAGTATCTCCAGAGATTCCTCAC----------------------------T.....................................................................................26200.25505000000000
..............................................................................................................................................................................................................AGAAGTATCTCCAGAGATTCCTCAC----------------------------......................................................................................25200.25505000000000
.......................................................................................................................................................................................................TG--TCTAGAAGTATCTCCAGAGATT........................................................................................................................24200.20404000000000
.............................................................................................................................................................................................................TAGAAGTATCTCCAGAGATTCCTCAC----------------------------TCG...................................................................................29200.20404000000000
....................................................................................................................................................................................................................................CAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCATC.............................25200.15303000000000
.......................................................................................................................................................................................................................TCCAGAGATTCCTCAC----------------------------TCGTGC-TGG............................................................................25200.15303000000000
................................................................................................................................................................................................................................TCCTCAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GC.................................25200.15303000000000
.............................................................................................................................T----------------------------------------------TTTG-GCTGTTTCCTGGGAAGTG--AG..................................................................................................................................................25200.15303000000000
...................................................................................................................................................................................................................................TCAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCA...............................24200.15302000010000
...................................................................................................................................................................................................................................................................TCGTGC-TGGTCC-AGGA---------------------------------GCCATC.............................22200.10201100000000
.............................................................................................................................T----------------------------------------------TTTG-GCTGTTTCCTGGGAAGTG--....................................................................................................................................................23200.10202000000000
...................................................................................................................................................................................TGTTTCCTGGGAAGTG--AGTG--TC............................................................................................................................................22200.05101000000000
.............................................................................................................................................................................TTG-GCTGTTTCCTGGGAAGTG--AGTG--TC............................................................................................................................................27200.05101000000000
...................................................................................................................................................................................................................TATCTCCAGAGATTCCTCAC----------------------------TCGTGC-T..............................................................................27200.05101000000000
..............................................................................................................................................................................TG-GCTGTTTCCTGGGAAGTG--AGTG--..............................................................................................................................................24200.05101000000000
.................................................................................................................................................................................................................AGTATCTCCAGAGATTCCT.....................................................................................................................19200.05101000000000
..............................................................................................................................................................................................................................ATTCCTCAC----------------------------TCGTGC-TGGTCC-AG......................................................................23200.05101000000000
................................................................................................................................................................................................................AAGTATCTCCAGAGATTCCTCAC----------------------------T.....................................................................................24200.05101000000000
.................................................................................................................................................................................................TG--AGTG--TCTAGAAGTATCTCCAGAGATT........................................................................................................................28200.05101000000000
.......................................................................................................................................................................................................TG--TCTAGAAGTATCTCCAGAGATTCCT.....................................................................................................................27200.05100100000000
.......................................................................................................................................................................................TCCTGGGAAGTG--AGTG--TCTAGAAGTA....................................................................................................................................26200.05101000000000
.................................................................................................................................................................................................................AGTATCTCCAGAGATTCCTCAC----------------------------C.....................................................................................23200.05100100000000
......................................................................................................................................................................................................................................................................TGC-TGGTCC-AGGA---------------------------------GCCATCT............................20200.05101000000000
.....................................................................................................................................................................................................................................AC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCAT..............................23200.05101000000000
.........................................................................................................................AGCGT----------------------------------------------TTTG-GCTGTTTCCTGGG...........................................................................................................................................................22200.05101000000000
.................................................................................................................................................................................................TG--AGTG--TCTAGAAGTATCTCCAGAGA..........................................................................................................................26200.05101000000000
...............................................................................................................................................................................................................GAAGTATCTCCAGAGATTCCTCAC----------------------------TC....................................................................................26200.05101000000000
................................................................................................................................................................................................................................TCCTCAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCA...............................27200.05101000000000
...............................................................................................................................................................................................................................TTCCTCAC----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GC.................................26200.05100000010000
...........................................................................................................................................................................................................................GAGATTCCTCAC----------------------------TCGTGC-TGG............................................................................21200.05101000000000
.............................................................................................................................................................................TTG-GCTGTTTCCTGGGAAGTG--AGTG--TT............................................................................................................................................27200.05101000000000
...............................................................................................................................................................................................................GAAGTATCTCCAGAGATTCCTCAC----------------------------TCG...................................................................................27200.05101000000000
..............................................................................................................................................................................................................AGAAGTATCTCCAGAGATTCCTCAC----------------------------TC....................................................................................27200.05101000000000
......................................................................................................................................................................................................................................C----------------------------TCGTGC-TGGTCC-AGGA---------------------------------GCCA...............................21200.05101000000000
.............................................................................................................................................................................................................TAGAAGTATCTCCAGAGATT........................................................................................................................20200.05100100000000
............................................................................................................................................................................................................CTAGAAGTATCTCCAGAGATTCCTCAC----------------------------T.....................................................................................28200.05101000000000

Generated: 05/15/2015 at 02:44 PM